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Gene Dmel\CG3040

General Information
Symbol	Dmel\CG3040	Species	D. melanogaster
Name		Annotation symbol	CG3040
Feature type	protein_coding_gene	FlyBase ID	FBgn0029925
Gene Model Status	Current	Stock availability	2 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	6E4-6E4	Sequence location	X:6,866,357..6,867,443 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG3040 (FBgn0029925). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. The phenotype of this allele is annotated with: trichogen cell. It has one annotated transcript and one annotated polypeptide. Protein features are: Leucine-rich repeat; Leucine-rich repeat, typical subtype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-18 hour embryonic stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1626579_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG3040. Gene sequence location is X:6866357..6867443.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN22132
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 6E4-6E4   Limits computationally determined from genome sequence between P{EP}EP1338 and P{EP}inx7EP1641
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG3040 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.43
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG3040-RA FBtr0071038  NM_132144   1087   238
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG3040-PA   FBpp0070997   26.9   238   8.20     NP_572372   AAF46224
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Leucine-rich repeat (IPR001611) Leucine-rich repeat, typical subtype (IPR003591)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA567119   AA567124   AE014298 AAF46224   AW941116   AY060823 AAL28371   AY232138   BI617345   CO262440   CO265228   CO291341   CO330325   EC081869   EC084275   EC196553   EC216300
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9W3T9
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0029925    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0029925 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-18 hour embryonic stages, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0029925 expression level Developmental Stage   Expression Level embryo 00-02hr    2282 embryo 02-04hr    736 embryo 04-06hr    1403 embryo 06-08hr    1578 embryo 08-10hr    1706 embryo 10-12hr    2104 embryo 12-14hr    1402 embryo 14-16hr    1250 embryo 16-18hr    1314 embryo 18-20hr    1388 embryo 20-22hr    1097 embryo 22-24hr    1221 larva L1    1074 larva L2    1174 larva L3 12hr old    868 larva L3 puffstage 1-2    745 larva L3 puffstage 3-6    1038 larva L3 puffstage 7-9    1352 white prepupae new    1291 white prepupae 12hr    1154 white prepupae 24hr    1200 pupae 2d postWPP    1265 pupae 3d postWPP    1067 pupae 4d postWPP    1064 adult male 01day    1206 adult male 05day    1395 adult male 30day    1448 adult female 01day    1012 adult female 05day    1477 adult female 30day    1691 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2282) embryo 02-04hr  (736) embryo 04-06hr  (1403) embryo 06-08hr  (1578) embryo 08-10hr  (1706) embryo 10-12hr  (2104) embryo 12-14hr  (1402) embryo 14-16hr  (1250) embryo 16-18hr  (1314) embryo 18-20hr  (1388) embryo 20-22hr  (1097) embryo 22-24hr  (1221) larva L1  (1074) larva L2  (1174) larva L3 12hr old  (868) larva L3 puffstage 1-2  (745) larva L3 puffstage 3-6  (1038) larva L3 puffstage 7-9  (1352) white prepupae new  (1291) white prepupae 12hr  (1154) white prepupae 24hr  (1200) pupae 2d postWPP  (1265) pupae 3d postWPP  (1067) pupae 4d postWPP  (1064) adult male 01day  (1206) adult male 05day  (1395) adult male 30day  (1448) adult female 01day  (1012) adult female 05day  (1477) adult female 30day  (1691) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2282) embryo 02-04hr    736 embryo 04-06hr  1403 embryo 06-08hr  (1578) embryo 08-10hr  (1706) embryo 10-12hr  (2104) embryo 12-14hr  1402 embryo 14-16hr    1250 embryo 16-18hr    1314 embryo 18-20hr    1388 embryo 20-22hr    1097 embryo 22-24hr    1221 larva L1    1074 larva L2    1174 larva L3 12hr old    868 larva L3 puffstage 1-2    745 larva L3 puffstage 3-6    1038 larva L3 puffstage 7-9    1352 white prepupae new    1291 white prepupae 12hr    1154 white prepupae 24hr    1200 pupae 2d postWPP    1265 pupae 3d postWPP    1067 pupae 4d postWPP    1064 adult male 01day    1206 adult male 05day    1395 adult male 30day  1448 adult female 01day    1012 adult female 05day  1477 adult female 30day  (1691) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2282 embryo 02-04hr    736 embryo 04-06hr    1403 embryo 06-08hr    1578 embryo 08-10hr    1706 embryo 10-12hr    2104 embryo 12-14hr    1402 embryo 14-16hr    1250 embryo 16-18hr    1314 embryo 18-20hr    1388 embryo 20-22hr    1097 embryo 22-24hr    1221 larva L1    1074 larva L2    1174 larva L3 12hr old    868 larva L3 puffstage 1-2    745 larva L3 puffstage 3-6    1038 larva L3 puffstage 7-9    1352 white prepupae new    1291 white prepupae 12hr    1154 white prepupae 24hr    1200 pupae 2d postWPP    1265 pupae 3d postWPP    1067 pupae 4d postWPP    1064 adult male 01day    1206 adult male 05day    1395 adult male 30day    1448 adult female 01day    1012 adult female 05day    1477 adult female 30day    1691 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2282 embryo 02-04hr    736 embryo 04-06hr    1403 embryo 06-08hr    1578 embryo 08-10hr    1706 embryo 10-12hr    2104 embryo 12-14hr    1402 embryo 14-16hr    1250 embryo 16-18hr    1314 embryo 18-20hr    1388 embryo 20-22hr    1097 embryo 22-24hr    1221 larva L1    1074 larva L2    1174 larva L3 12hr old    868 larva L3 puffstage 1-2    745 larva L3 puffstage 3-6    1038 larva L3 puffstage 7-9    1352 white prepupae new    1291 white prepupae 12hr    1154 white prepupae 24hr    1200 pupae 2d postWPP    1265 pupae 3d postWPP    1067 pupae 4d postWPP    1064 adult male 01day    1206 adult male 05day    1395 adult male 30day    1448 adult female 01day    1012 adult female 05day    1477 adult female 30day    1691 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0029925 expression level Developmental Stage   Expression Level embryo 00-02hr    2282 embryo 02-04hr    736 embryo 04-06hr    1403 embryo 06-08hr    1578 embryo 08-10hr    1706 embryo 10-12hr    2104 embryo 12-14hr    1402 embryo 14-16hr    1250 embryo 16-18hr    1314 embryo 18-20hr    1388 embryo 20-22hr    1097 embryo 22-24hr    1221 larva L1    1074 larva L2    1174 larva L3 12hr old    868 larva L3 puffstage 1-2    745 larva L3 puffstage 3-6    1038 larva L3 puffstage 7-9    1352 white prepupae new    1291 white prepupae 12hr    1154 white prepupae 24hr    1200 pupae 2d postWPP    1265 pupae 3d postWPP    1067 pupae 4d postWPP    1064 adult male 01day    1206 adult male 05day    1395 adult male 30day    1448 adult female 01day    1012 adult female 05day    1477 adult female 30day    1691 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2282) embryo 02-04hr  (736) embryo 04-06hr  (1403) embryo 06-08hr  (1578) embryo 08-10hr  (1706) embryo 10-12hr  (2104) embryo 12-14hr  (1402) embryo 14-16hr  (1250) embryo 16-18hr  (1314) embryo 18-20hr  (1388) embryo 20-22hr  (1097) embryo 22-24hr  (1221) larva L1  (1074) larva L2  (1174) larva L3 12hr old  (868) larva L3 puffstage 1-2  (745) larva L3 puffstage 3-6  (1038) larva L3 puffstage 7-9  (1352) white prepupae new  (1291) white prepupae 12hr  (1154) white prepupae 24hr  (1200) pupae 2d postWPP  (1265) pupae 3d postWPP  (1067) pupae 4d postWPP  (1064) adult male 01day  (1206) adult male 05day  (1395) adult male 30day  (1448) adult female 01day  (1012) adult female 05day  (1477) adult female 30day  (1691) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  2282 embryo 02-04hr    736 embryo 04-06hr  1403 embryo 06-08hr  1578 embryo 08-10hr  1706 embryo 10-12hr  2104 embryo 12-14hr  1402 embryo 14-16hr    1250 embryo 16-18hr    1314 embryo 18-20hr    1388 embryo 20-22hr    1097 embryo 22-24hr    1221 larva L1    1074 larva L2    1174 larva L3 12hr old    868 larva L3 puffstage 1-2    745 larva L3 puffstage 3-6    1038 larva L3 puffstage 7-9    1352 white prepupae new    1291 white prepupae 12hr    1154 white prepupae 24hr    1200 pupae 2d postWPP    1265 pupae 3d postWPP    1067 pupae 4d postWPP    1064 adult male 01day    1206 adult male 05day    1395 adult male 30day  1448 adult female 01day    1012 adult female 05day  1477 adult female 30day  1691 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2282 embryo 02-04hr    736 embryo 04-06hr    1403 embryo 06-08hr    1578 embryo 08-10hr    1706 embryo 10-12hr    2104 embryo 12-14hr    1402 embryo 14-16hr    1250 embryo 16-18hr    1314 embryo 18-20hr    1388 embryo 20-22hr    1097 embryo 22-24hr    1221 larva L1    1074 larva L2    1174 larva L3 12hr old    868 larva L3 puffstage 1-2    745 larva L3 puffstage 3-6    1038 larva L3 puffstage 7-9    1352 white prepupae new    1291 white prepupae 12hr    1154 white prepupae 24hr    1200 pupae 2d postWPP    1265 pupae 3d postWPP    1067 pupae 4d postWPP    1064 adult male 01day    1206 adult male 05day    1395 adult male 30day    1448 adult female 01day    1012 adult female 05day    1477 adult female 30day    1691 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2282 embryo 02-04hr    736 embryo 04-06hr    1403 embryo 06-08hr    1578 embryo 08-10hr    1706 embryo 10-12hr    2104 embryo 12-14hr    1402 embryo 14-16hr    1250 embryo 16-18hr    1314 embryo 18-20hr    1388 embryo 20-22hr    1097 embryo 22-24hr    1221 larva L1    1074 larva L2    1174 larva L3 12hr old    868 larva L3 puffstage 1-2    745 larva L3 puffstage 3-6    1038 larva L3 puffstage 7-9    1352 white prepupae new    1291 white prepupae 12hr    1154 white prepupae 24hr    1200 pupae 2d postWPP    1265 pupae 3d postWPP    1067 pupae 4d postWPP    1064 adult male 01day    1206 adult male 05day    1395 adult male 30day    1448 adult female 01day    1012 adult female 05day    1477 adult female 30day    1691 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0029925    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0029925 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0029925 expression level Tissue   Expression Level Larval Central Nervous System    138.65 Larval Midgut    128.5 Larval Hindgut    121.8 Larval Malpighian Tubules    231.9 Larval Fat Body    109.3 Larval Salivary Gland    130.3 Larval Trachea    114.225 Larval Carcass    98.425 Adult Head    140.1 Adult Eye    344.3 Adult Brain    195 Adult Thoracic-Abdominal Ganglion    226.5 Adult Crop    122.7 Adult Midgut    104.8 Adult Hindgut    137.8 Adult Malpighian Tubules    182.1 Adult Fat Body    103 Adult Salivary Gland    204 Adult Heart    145.15 Adult VirginFemale Spermatheca    145.1 Adult InseminatedFemale Spermatheca    165.6 Adult Ovary    173.6 Adult Testis    89.3 Adult Male Accessory Gland    186.4 Adult Carcass    118.9 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    138.65 Larval Midgut    128.5 Larval Hindgut    121.8 Larval Malpighian Tubules    231.9 Larval Fat Body    109.3 Larval Salivary Gland    130.3 Larval Trachea    114.225 Larval Carcass    98.425 Adult Head    140.1 Adult Eye    344.3 Adult Brain    195 Adult Thoracic-Abdominal Ganglion    226.5 Adult Crop    122.7 Adult Midgut    104.8 Adult Hindgut    137.8 Adult Malpighian Tubules    182.1 Adult Fat Body    103 Adult Salivary Gland    204 Adult Heart    145.15 Adult VirginFemale Spermatheca    145.1 Adult InseminatedFemale Spermatheca    165.6 Adult Ovary    173.6 Adult Testis    89.3 Adult Male Accessory Gland    186.4 Adult Carcass    118.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    138.65 Larval Midgut    128.5 Larval Hindgut    121.8 Larval Malpighian Tubules    231.9 Larval Fat Body    109.3 Larval Salivary Gland    130.3 Larval Trachea    114.225 Larval Carcass    98.425 Adult Head    140.1 Adult Eye    344.3 Adult Brain    195 Adult Thoracic-Abdominal Ganglion    226.5 Adult Crop    122.7 Adult Midgut    104.8 Adult Hindgut    137.8 Adult Malpighian Tubules    182.1 Adult Fat Body    103 Adult Salivary Gland    204 Adult Heart    145.15 Adult VirginFemale Spermatheca    145.1 Adult InseminatedFemale Spermatheca    165.6 Adult Ovary    173.6 Adult Testis    89.3 Adult Male Accessory Gland    186.4 Adult Carcass    118.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    138.65 Larval Midgut    128.5 Larval Hindgut    121.8 Larval Malpighian Tubules    231.9 Larval Fat Body    109.3 Larval Salivary Gland    130.3 Larval Trachea    114.225 Larval Carcass    98.425 Adult Head    140.1 Adult Eye    344.3 Adult Brain    195 Adult Thoracic-Abdominal Ganglion    226.5 Adult Crop    122.7 Adult Midgut    104.8 Adult Hindgut    137.8 Adult Malpighian Tubules    182.1 Adult Fat Body    103 Adult Salivary Gland    204 Adult Heart    145.15 Adult VirginFemale Spermatheca    145.1 Adult InseminatedFemale Spermatheca    165.6 Adult Ovary    173.6 Adult Testis    89.3 Adult Male Accessory Gland    186.4 Adult Carcass    118.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0029925 expression level Tissue   Expression Level Larval Central Nervous System    138.65 Larval Midgut    128.5 Larval Hindgut    121.8 Larval Malpighian Tubules    231.9 Larval Fat Body    109.3 Larval Salivary Gland    130.3 Larval Trachea    114.225 Larval Carcass    98.425 Adult Head    140.1 Adult Eye    344.3 Adult Brain    195 Adult Thoracic-Abdominal Ganglion    226.5 Adult Crop    122.7 Adult Midgut    104.8 Adult Hindgut    137.8 Adult Malpighian Tubules    182.1 Adult Fat Body    103 Adult Salivary Gland    204 Adult Heart    145.15 Adult VirginFemale Spermatheca    145.1 Adult InseminatedFemale Spermatheca    165.6 Adult Ovary    173.6 Adult Testis    89.3 Adult Male Accessory Gland    186.4 Adult Carcass    118.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    138.65 Larval Midgut    128.5 Larval Hindgut    121.8 Larval Malpighian Tubules    231.9 Larval Fat Body    109.3 Larval Salivary Gland    130.3 Larval Trachea    114.225 Larval Carcass    98.425 Adult Head    140.1 Adult Eye    344.3 Adult Brain    195 Adult Thoracic-Abdominal Ganglion    226.5 Adult Crop    122.7 Adult Midgut    104.8 Adult Hindgut    137.8 Adult Malpighian Tubules    182.1 Adult Fat Body    103 Adult Salivary Gland    204 Adult Heart    145.15 Adult VirginFemale Spermatheca    145.1 Adult InseminatedFemale Spermatheca    165.6 Adult Ovary    173.6 Adult Testis    89.3 Adult Male Accessory Gland    186.4 Adult Carcass    118.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    138.65 Larval Midgut    128.5 Larval Hindgut    121.8 Larval Malpighian Tubules    231.9 Larval Fat Body    109.3 Larval Salivary Gland    130.3 Larval Trachea    114.225 Larval Carcass    98.425 Adult Head    140.1 Adult Eye    344.3 Adult Brain    195 Adult Thoracic-Abdominal Ganglion    226.5 Adult Crop    122.7 Adult Midgut    104.8 Adult Hindgut    137.8 Adult Malpighian Tubules    182.1 Adult Fat Body    103 Adult Salivary Gland    204 Adult Heart    145.15 Adult VirginFemale Spermatheca    145.1 Adult InseminatedFemale Spermatheca    165.6 Adult Ovary    173.6 Adult Testis    89.3 Adult Male Accessory Gland    186.4 Adult Carcass    118.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    138.65 Larval Midgut    128.5 Larval Hindgut    121.8 Larval Malpighian Tubules    231.9 Larval Fat Body    109.3 Larval Salivary Gland    130.3 Larval Trachea    114.225 Larval Carcass    98.425 Adult Head    140.1 Adult Eye    344.3 Adult Brain    195 Adult Thoracic-Abdominal Ganglion    226.5 Adult Crop    122.7 Adult Midgut    104.8 Adult Hindgut    137.8 Adult Malpighian Tubules    182.1 Adult Fat Body    103 Adult Salivary Gland    204 Adult Heart    145.15 Adult VirginFemale Spermatheca    145.1 Adult InseminatedFemale Spermatheca    165.6 Adult Ovary    173.6 Adult Testis    89.3 Adult Male Accessory Gland    186.4 Adult Carcass    118.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    140.1   NA  Eye    344.3   NA  Brain    195   138.65  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    226.5   NA  Crop    122.7   128.5  Midgut    104.8   121.8  Hindgut    137.8   231.9  Malpighian Tubules    182.1   109.3  Fat Body    103   130.3  Salivary Gland    204   NA  Heart    145.15   114.225  Trachea    NA   NA  VirginFemale Spermatheca    145.1   NA  InseminatedFemale Spermatheca    165.6   NA  Ovary    173.6   NA  Testis    89.3   NA  Male Accessory Gland    186.4   98.425  Carcass    118.9 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_27
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0029925 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3040-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele semi-lethal | pupal stage, with Scer\GAL4pnr-MD237 CG3040GD8858 Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 CG3040GD8858 Phenotype manifest in Allele trichogen cell, with Scer\GAL4pnr-MD237 CG3040GD8858
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG3040 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG3040 Class Mutagen Stocks Known lesion CG3040GD8858 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8858} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG3040 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0029925 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31642
Orthologs
Genome-wide drosophilid orthologs	Dana\GF20868 Dere\GG17646 Dgri\GH12826 Dmoj\GI14698 Dper\GL13411 Dpse\GA15818 Dsec\GM17488 Dsim\GD16172 Dvir\GJ16607 Dwil\GK10093 Dyak\GE17554
Curated drosophilid orthologs	Dpse\GA15818   Dyak\GE17554
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL006068-PA Aedes aegypti (mosquito) AGAP001491-PA Anopheles gambiae (mosquito) XP_001121818.1 Apis mellifera (honey bee) At5g07910.1 Arabidopsis thaliana (wall cress) 21322 Batrachochytrium dendrobatidis (chytrid fungus) 277364 Branchiostoma floridae (lancelet) 289666 Branchiostoma floridae (lancelet) XP_001893093.1 Brugia malayi (roundworm nematode) BGIBMGA007706-PA Bombyx mori (silk worm) ENSBTAP00000042745 Bos taurus (bovine) ENSBTAP00000042757 Bos taurus (bovine) ENSCAFP00000016379 Canis familiaris (dog) ENSCINP00000024085 Ciona intestinalis (sea squirt) JA08344 Caenorhabditis japonica (nematode) CPIJ015500 Culex pipens (mosquito) ENSCPOP00000003289 Cavia porcellus (guinea pig) 100208 Chlamidomonas reinhardtii (green alga) 167893 Capitella spl (polychaete worm) 303579 Daphnia pulex (daphnia) ENSDARP00000064514 Danio rerio (zebra fish) ENSECAP00000017154 Equus caballus (horse) XP_001913672 Entamoeba histolytica (anaerobic protozoan) XP_655954 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000005109 Gymnopilus aculeatus (mushroom) ENSGALP00000031997 Gallus gallus (chicken) GL50803_12800 Giardia lamblia (flagellated protozoan) 63476 Hypsipyla robusta (cedar shoot borer) ENSP00000326817 Homo sapiens (human) ISCW021938-PA Ixodes scapularis (deer tick) 197802 Lottia gigantea (owl limpet) ENSMODP00000022296 Monodelphis domestica (gray opossum) ENSMMUP00000002062 Macaca mulatta (rhesus monkey) ENSMUSP00000028742 Mus musculus (house mouse) 172905 Nematostella vectensis (starlet anemone) XP_001601190.1 Nasonia vitripennis (wasp) ENSOANP00000008127 Ornithorynchus anatinus (platypus) ENSORLP00000012591 Oryzias latipes (japanese killifish) LOC_Os03g11360.2 Oryza sativa (asian rice) 31679 Ostreococcus tauri (green alga) PHUM003940-PA Pediculus humanus (human body louse) PP15544 Pristionchus pacificus (nematode) 149714 Physcomitrella patens (moss) ENSPPYP00000007249 Pongo pygmaeus (orangutan) 79473 Phytophthora ramorum (sudden oak death pathogen) 140889 Phytophthora sojae (root rot pathogen) 835084 Populus trichocarpa (black cottonwood) ENSPTRP00000011913 Pan troglodytes (chimpanzee) ENSRNOP00000050922 Rattus norvegicus (norway rat) XP_782986.2 Strongylocentrotus purpuratus (purple sea urchin) 51807 Trichoplax adhaerens (metazoa) XP_973486.1 Tribolium castaneum (red flour beetle) ENSTNIP00000005152 Tetraodon nigroviridis (green spotted pufferfish) 9693 Thalassiosira pseudonana (marine diatom) ENSTRUP00000026026 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000000098 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB13929 NV14566 LH21644 ISCW021938 FBgn0068342 FBgn0212108 FBgn0203791 FBgn0187802 FBgn0172397 JGI_V11_303579 FBgn0075835 FBgn0151017 FBgn0137449 FBgn0120305 FBgn0109868 FBgn0097874 CPIJ015500 BGIBMGA007706 ACYPI003617 GB16665 AGAP001491 AAEL006068 PHUM491020 GLEAN_04931
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
VDRC	v19219 w1118; P{GD8858}v19219 v19220 w1118; P{GD8858}v19220
Genomic Clones ( 2 )
	BACR04D11 BACR17C09 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 11 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM01152
Other clones	yak-ad_CG3040
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GM01140 RH47648
Other clones	32419 192163 CK01.101B.C12 EK077744 EK085344 EK141956 EK294961
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0029925 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31642
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132144 RefSeq (Proteins) • NP_572372 DDBJ / EMBL / GenBank • AA567124 AAF46224 AAL28371 AW941116 AY060823 Entrez Gene - A searchable database of RefSeq genes. • 31642 UniProtKB/TrEMBL • Q9W3T9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Leucine-rich repeat (IPR001611) Leucine-rich repeat, typical subtype (IPR003591)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0029925 DRSC - Results from RNAi screens. • FBgn0029925 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0029925 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3040-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0029925 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31642 InParanoid A subset of ortholog calls from InParanoid. • AAEL006068-PA Aedes aegypti (mosquito) AGAP001491-PA Anopheles gambiae (mosquito) XP_001121818.1 Apis mellifera (honey bee) At5g07910.1 Arabidopsis thaliana (wall cress) 21322 Batrachochytrium dendrobatidis (chytrid fungus) 277364 Branchiostoma floridae (lancelet) 289666 Branchiostoma floridae (lancelet) XP_001893093.1 Brugia malayi (roundworm nematode) BGIBMGA007706-PA Bombyx mori (silk worm) ENSBTAP00000042745 Bos taurus (bovine) ENSBTAP00000042757 Bos taurus (bovine) ENSCAFP00000016379 Canis familiaris (dog) ENSCINP00000024085 Ciona intestinalis (sea squirt) JA08344 Caenorhabditis japonica (nematode) CPIJ015500 Culex pipens (mosquito) ENSCPOP00000003289 Cavia porcellus (guinea pig) 100208 Chlamidomonas reinhardtii (green alga) 167893 Capitella spl (polychaete worm) 303579 Daphnia pulex (daphnia) ENSDARP00000064514 Danio rerio (zebra fish) ENSECAP00000017154 Equus caballus (horse) XP_001913672 Entamoeba histolytica (anaerobic protozoan) XP_655954 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000005109 Gymnopilus aculeatus (mushroom) ENSGALP00000031997 Gallus gallus (chicken) GL50803_12800 Giardia lamblia (flagellated protozoan) 63476 Hypsipyla robusta (cedar shoot borer) ENSP00000326817 Homo sapiens (human) ISCW021938-PA Ixodes scapularis (deer tick) 197802 Lottia gigantea (owl limpet) ENSMODP00000022296 Monodelphis domestica (gray opossum) ENSMMUP00000002062 Macaca mulatta (rhesus monkey) ENSMUSP00000028742 Mus musculus (house mouse) 172905 Nematostella vectensis (starlet anemone) XP_001601190.1 Nasonia vitripennis (wasp) ENSOANP00000008127 Ornithorynchus anatinus (platypus) ENSORLP00000012591 Oryzias latipes (japanese killifish) LOC_Os03g11360.2 Oryza sativa (asian rice) 31679 Ostreococcus tauri (green alga) PHUM003940-PA Pediculus humanus (human body louse) PP15544 Pristionchus pacificus (nematode) 149714 Physcomitrella patens (moss) ENSPPYP00000007249 Pongo pygmaeus (orangutan) 79473 Phytophthora ramorum (sudden oak death pathogen) 140889 Phytophthora sojae (root rot pathogen) 835084 Populus trichocarpa (black cottonwood) ENSPTRP00000011913 Pan troglodytes (chimpanzee) ENSRNOP00000050922 Rattus norvegicus (norway rat) XP_782986.2 Strongylocentrotus purpuratus (purple sea urchin) 51807 Trichoplax adhaerens (metazoa) XP_973486.1 Tribolium castaneum (red flour beetle) ENSTNIP00000005152 Tetraodon nigroviridis (green spotted pufferfish) 9693 Thalassiosira pseudonana (marine diatom) ENSTRUP00000026026 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000000098 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31642 modMine - Data generated by the modENCODE project. • FBgn0029925 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB13929 NV14566 LH21644 ISCW021938 FBgn0068342 FBgn0212108 FBgn0203791 FBgn0187802 FBgn0172397 JGI_V11_303579 FBgn0075835 FBgn0151017 FBgn0137449 FBgn0120305 FBgn0109868 FBgn0097874 CPIJ015500 BGIBMGA007706 ACYPI003617 GB16665 AGAP001491 AAEL006068 PHUM491020 GLEAN_04931
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	CG3040   CT9706 (Hynes and Zhao, 2000)
Name Synonym
Secondary FlyBase IDs
References ( 9 )
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Hynes and Zhao, 2000, J. Cell Biol. 150(2): Table S7. LRR repeat-containing proteins. [FBrf0132111]
Personal communication to FlyBase	Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Robertson, 2001.5.6, FlyBase error report on Sun May 06 00:40:30 2001. FlyBase error report on Sun May 06 00:40:30 2001. [FBrf0136023]
FlyBase analysis	FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]