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Gene Dmel\CG15309

General Information
Symbol	Dmel\CG15309	Species	D. melanogaster
Name		Annotation symbol	CG15309
Feature type	protein_coding_gene	FlyBase ID	FBgn0030183
Gene Model Status	Current	Stock availability	7 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	9B4-9B4	Sequence location	X:10,099,325..10,106,407 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG15309 (FBgn0030183). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: imaginal disc-derived wing morphogenesis. 9 alleles are reported. No phenotypic data is available. It has 5 annotated transcripts and 5 annotated polypeptides. Protein features are: Yippee-like protein. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed during late larval stages, during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval midgut, larval Malpighian tubules, larval fat body. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1627228_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG15309. Gene sequence location is X:10099325..10106407.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 9B4-9B4   Limits computationally determined from genome sequence between P{EP}nejEP1149&P{EP}nejEP1179 and P{EP}α-Man-IEP1628&P{EP}α-Man-IEP1307
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG15309 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Low-frequency RNA-Seq exon junction(s) not annotated. Gene model reviewed during 5.46
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG15309-RA FBtr0071487  NM_132381   1622   114 CG15309-RB FBtr0112974  NM_001103466   1924   114 CG15309-RC FBtr0332898  NM_001272465   2606   114 CG15309-RD FBtr0332899  NM_001272466   2877   114 CG15309-RE FBtr0332900  NM_001272467   3058   114
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG15309-PA   FBpp0071416   12.9   114   7.08     NP_572609   AAF46560 CG15309-PB   FBpp0111887   12.9   114   7.08     NP_001096936   ABW09382 CG15309-PC   FBpp0305119   12.9   114   7.08     NP_001259394   AGB95237 CG15309-PD   FBpp0305120   12.9   114   7.08     NP_001259395   AGB95238 CG15309-PE   FBpp0305121   12.9   114   7.08     NP_001259396   AGB95239
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Yippee-like protein (IPR004910)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA141270   AE014298 AAF46560   AE014298 ABW09382   AE014298 AGB95237   AE014298 AGB95238   AE014298 AGB95239   AI113946   AW940364   AY060270 AAL25309   BF489037   BG639260   BI171522   BI171577   BT149873   CA803979   CA805749   CA807347   CO152722   CO182219   CO192471   CO275631   CO283769   CO302358   CO302386   CO307531   CO325717   CO332885   CO342266   EC063494   EC071326   EC074056   EC089011   EC234522   EC245947
UniProtKB/Swiss-Prot	Q9W2X7
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval midgut, larval Malpighian tubules, larval fat body. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    173.9 Larval Midgut    776.9 Larval Hindgut    334.1 Larval Malpighian Tubules    1490.5 Larval Fat Body    894.7 Larval Salivary Gland    120.3 Larval Trachea    112.375 Larval Carcass    333.4 Adult Head    251.7 Adult Eye    477.55 Adult Brain    281.3 Adult Thoracic-Abdominal Ganglion    325.2 Adult Crop    266.7 Adult Midgut    208.4 Adult Hindgut    209 Adult Malpighian Tubules    324.9 Adult Fat Body    318.1 Adult Salivary Gland    241.9 Adult Heart    360.5 Adult VirginFemale Spermatheca    432.4 Adult InseminatedFemale Spermatheca    320.4 Adult Ovary    198.9 Adult Testis    63.1 Adult Male Accessory Gland    226.5 Adult Carcass    234.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    173.9 Larval Midgut  (776.9) Larval Hindgut    334.1 Larval Malpighian Tubules  (1490.5) Larval Fat Body  (894.7) Larval Salivary Gland    120.3 Larval Trachea    112.375 Larval Carcass    333.4 Adult Head    251.7 Adult Eye    477.55 Adult Brain    281.3 Adult Thoracic-Abdominal Ganglion    325.2 Adult Crop    266.7 Adult Midgut    208.4 Adult Hindgut    209 Adult Malpighian Tubules    324.9 Adult Fat Body    318.1 Adult Salivary Gland    241.9 Adult Heart    360.5 Adult VirginFemale Spermatheca    432.4 Adult InseminatedFemale Spermatheca    320.4 Adult Ovary    198.9 Adult Testis    63.1 Adult Male Accessory Gland    226.5 Adult Carcass    234.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    173.9 Larval Midgut    776.9 Larval Hindgut    334.1 Larval Malpighian Tubules  (1490.5) Larval Fat Body    894.7 Larval Salivary Gland    120.3 Larval Trachea    112.375 Larval Carcass    333.4 Adult Head    251.7 Adult Eye    477.55 Adult Brain    281.3 Adult Thoracic-Abdominal Ganglion    325.2 Adult Crop    266.7 Adult Midgut    208.4 Adult Hindgut    209 Adult Malpighian Tubules    324.9 Adult Fat Body    318.1 Adult Salivary Gland    241.9 Adult Heart    360.5 Adult VirginFemale Spermatheca    432.4 Adult InseminatedFemale Spermatheca    320.4 Adult Ovary    198.9 Adult Testis    63.1 Adult Male Accessory Gland    226.5 Adult Carcass    234.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    173.9 Larval Midgut    776.9 Larval Hindgut    334.1 Larval Malpighian Tubules    1490.5 Larval Fat Body    894.7 Larval Salivary Gland    120.3 Larval Trachea    112.375 Larval Carcass    333.4 Adult Head    251.7 Adult Eye    477.55 Adult Brain    281.3 Adult Thoracic-Abdominal Ganglion    325.2 Adult Crop    266.7 Adult Midgut    208.4 Adult Hindgut    209 Adult Malpighian Tubules    324.9 Adult Fat Body    318.1 Adult Salivary Gland    241.9 Adult Heart    360.5 Adult VirginFemale Spermatheca    432.4 Adult InseminatedFemale Spermatheca    320.4 Adult Ovary    198.9 Adult Testis    63.1 Adult Male Accessory Gland    226.5 Adult Carcass    234.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    173.9 Larval Midgut    776.9 Larval Hindgut    334.1 Larval Malpighian Tubules    1490.5 Larval Fat Body    894.7 Larval Salivary Gland    120.3 Larval Trachea    112.375 Larval Carcass    333.4 Adult Head    251.7 Adult Eye    477.55 Adult Brain    281.3 Adult Thoracic-Abdominal Ganglion    325.2 Adult Crop    266.7 Adult Midgut    208.4 Adult Hindgut    209 Adult Malpighian Tubules    324.9 Adult Fat Body    318.1 Adult Salivary Gland    241.9 Adult Heart    360.5 Adult VirginFemale Spermatheca    432.4 Adult InseminatedFemale Spermatheca    320.4 Adult Ovary    198.9 Adult Testis    63.1 Adult Male Accessory Gland    226.5 Adult Carcass    234.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    173.9 Larval Midgut  776.9 Larval Hindgut    334.1 Larval Malpighian Tubules  (1490.5) Larval Fat Body  (894.7) Larval Salivary Gland    120.3 Larval Trachea    112.375 Larval Carcass    333.4 Adult Head    251.7 Adult Eye    477.55 Adult Brain    281.3 Adult Thoracic-Abdominal Ganglion    325.2 Adult Crop    266.7 Adult Midgut    208.4 Adult Hindgut    209 Adult Malpighian Tubules    324.9 Adult Fat Body    318.1 Adult Salivary Gland    241.9 Adult Heart    360.5 Adult VirginFemale Spermatheca    432.4 Adult InseminatedFemale Spermatheca    320.4 Adult Ovary    198.9 Adult Testis    63.1 Adult Male Accessory Gland    226.5 Adult Carcass    234.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    173.9 Larval Midgut    776.9 Larval Hindgut    334.1 Larval Malpighian Tubules  1490.5 Larval Fat Body    894.7 Larval Salivary Gland    120.3 Larval Trachea    112.375 Larval Carcass    333.4 Adult Head    251.7 Adult Eye    477.55 Adult Brain    281.3 Adult Thoracic-Abdominal Ganglion    325.2 Adult Crop    266.7 Adult Midgut    208.4 Adult Hindgut    209 Adult Malpighian Tubules    324.9 Adult Fat Body    318.1 Adult Salivary Gland    241.9 Adult Heart    360.5 Adult VirginFemale Spermatheca    432.4 Adult InseminatedFemale Spermatheca    320.4 Adult Ovary    198.9 Adult Testis    63.1 Adult Male Accessory Gland    226.5 Adult Carcass    234.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    173.9 Larval Midgut    776.9 Larval Hindgut    334.1 Larval Malpighian Tubules    1490.5 Larval Fat Body    894.7 Larval Salivary Gland    120.3 Larval Trachea    112.375 Larval Carcass    333.4 Adult Head    251.7 Adult Eye    477.55 Adult Brain    281.3 Adult Thoracic-Abdominal Ganglion    325.2 Adult Crop    266.7 Adult Midgut    208.4 Adult Hindgut    209 Adult Malpighian Tubules    324.9 Adult Fat Body    318.1 Adult Salivary Gland    241.9 Adult Heart    360.5 Adult VirginFemale Spermatheca    432.4 Adult InseminatedFemale Spermatheca    320.4 Adult Ovary    198.9 Adult Testis    63.1 Adult Male Accessory Gland    226.5 Adult Carcass    234.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    251.7   NA  Eye    477.55   NA  Brain    281.3   173.9  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    325.2   NA  Crop    266.7   776.9  Midgut    208.4   334.1  Hindgut    209   1490.5  Malpighian Tubules    324.9   894.7  Fat Body    318.1   120.3  Salivary Gland    241.9   NA  Heart    360.5   112.375  Trachea    NA   NA  VirginFemale Spermatheca    432.4   NA  InseminatedFemale Spermatheca    320.4   NA  Ovary    198.9   NA  Testis    63.1   NA  Male Accessory Gland    226.5   333.4  Carcass    234.5 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    18 central nervous system, larvae L3    55 central nervous system, pupae P8    41 head, virgin 1-day female    34 head, virgin 4-day female    26 head, virgin 20-day female    10 head, mated 1-day female    29 head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male    31 head, mated 4-day male    25 head, mated 20-day male    20 salivary gland, larvae L3 wandering    27 salivary gland, white prepupae    141 digestive system, larvae L3 wandering    154 digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    10 fat body, larvae L3 wandering    22 fat body, white prepupae    108 fat body, pupae P8    123 carcass, larvae L3 wandering    46 carcass, 1-day adult    19 carcass, 4-day adult    12 carcass, 20-day adult    11 ovary, virgin 4-day female    27 ovary, mated 4-day female    22 testis, mated 4-day male    21 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    18 central nervous system, larvae L3  (55) central nervous system, pupae P8  (41) head, virgin 1-day female  (34) head, virgin 4-day female  26 head, virgin 20-day female    10 head, mated 1-day female  (29) head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male  (31) head, mated 4-day male    25 head, mated 20-day male    20 salivary gland, larvae L3 wandering  (27) salivary gland, white prepupae  (141) digestive system, larvae L3 wandering  (154) digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    10 fat body, larvae L3 wandering    22 fat body, white prepupae  (108) fat body, pupae P8  (123) carcass, larvae L3 wandering  (46) carcass, 1-day adult    19 carcass, 4-day adult    12 carcass, 20-day adult    11 ovary, virgin 4-day female  (27) ovary, mated 4-day female    22 testis, mated 4-day male    21 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    18 central nervous system, larvae L3    55 central nervous system, pupae P8    41 head, virgin 1-day female    34 head, virgin 4-day female    26 head, virgin 20-day female    10 head, mated 1-day female    29 head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male    31 head, mated 4-day male    25 head, mated 20-day male    20 salivary gland, larvae L3 wandering    27 salivary gland, white prepupae  (141) digestive system, larvae L3 wandering  (154) digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    10 fat body, larvae L3 wandering    22 fat body, white prepupae  (108) fat body, pupae P8  (123) carcass, larvae L3 wandering    46 carcass, 1-day adult    19 carcass, 4-day adult    12 carcass, 20-day adult    11 ovary, virgin 4-day female    27 ovary, mated 4-day female    22 testis, mated 4-day male    21 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    18 central nervous system, larvae L3    55 central nervous system, pupae P8    41 head, virgin 1-day female    34 head, virgin 4-day female    26 head, virgin 20-day female    10 head, mated 1-day female    29 head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male    31 head, mated 4-day male    25 head, mated 20-day male    20 salivary gland, larvae L3 wandering    27 salivary gland, white prepupae    141 digestive system, larvae L3 wandering    154 digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    10 fat body, larvae L3 wandering    22 fat body, white prepupae    108 fat body, pupae P8    123 carcass, larvae L3 wandering    46 carcass, 1-day adult    19 carcass, 4-day adult    12 carcass, 20-day adult    11 ovary, virgin 4-day female    27 ovary, mated 4-day female    22 testis, mated 4-day male    21 accessory gland, mated 4-day male    7 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    18 central nervous system, larvae L3    55 central nervous system, pupae P8    41 head, virgin 1-day female    34 head, virgin 4-day female    26 head, virgin 20-day female    10 head, mated 1-day female    29 head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male    31 head, mated 4-day male    25 head, mated 20-day male    20 salivary gland, larvae L3 wandering    27 salivary gland, white prepupae    141 digestive system, larvae L3 wandering    154 digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    10 fat body, larvae L3 wandering    22 fat body, white prepupae    108 fat body, pupae P8    123 carcass, larvae L3 wandering    46 carcass, 1-day adult    19 carcass, 4-day adult    12 carcass, 20-day adult    11 ovary, virgin 4-day female    27 ovary, mated 4-day female    22 testis, mated 4-day male    21 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    18 central nervous system, larvae L3  (55) central nervous system, pupae P8  (41) head, virgin 1-day female  (34) head, virgin 4-day female  26 head, virgin 20-day female    10 head, mated 1-day female  29 head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male  31 head, mated 4-day male    25 head, mated 20-day male    20 salivary gland, larvae L3 wandering  27 salivary gland, white prepupae  (141) digestive system, larvae L3 wandering  (154) digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    10 fat body, larvae L3 wandering    22 fat body, white prepupae  (108) fat body, pupae P8  (123) carcass, larvae L3 wandering  (46) carcass, 1-day adult    19 carcass, 4-day adult    12 carcass, 20-day adult    11 ovary, virgin 4-day female  27 ovary, mated 4-day female    22 testis, mated 4-day male    21 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    18 central nervous system, larvae L3    55 central nervous system, pupae P8    41 head, virgin 1-day female    34 head, virgin 4-day female    26 head, virgin 20-day female    10 head, mated 1-day female    29 head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male    31 head, mated 4-day male    25 head, mated 20-day male    20 salivary gland, larvae L3 wandering    27 salivary gland, white prepupae  141 digestive system, larvae L3 wandering  (154) digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    10 fat body, larvae L3 wandering    22 fat body, white prepupae  108 fat body, pupae P8  123 carcass, larvae L3 wandering    46 carcass, 1-day adult    19 carcass, 4-day adult    12 carcass, 20-day adult    11 ovary, virgin 4-day female    27 ovary, mated 4-day female    22 testis, mated 4-day male    21 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    18 central nervous system, larvae L3    55 central nervous system, pupae P8    41 head, virgin 1-day female    34 head, virgin 4-day female    26 head, virgin 20-day female    10 head, mated 1-day female    29 head, mated 4-day female    20 head, mated 20-day female    12 head, mated 1-day male    31 head, mated 4-day male    25 head, mated 20-day male    20 salivary gland, larvae L3 wandering    27 salivary gland, white prepupae    141 digestive system, larvae L3 wandering    154 digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    10 fat body, larvae L3 wandering    22 fat body, white prepupae    108 fat body, pupae P8    123 carcass, larvae L3 wandering    46 carcass, 1-day adult    19 carcass, 4-day adult    12 carcass, 20-day adult    11 ovary, virgin 4-day female    27 ovary, mated 4-day female    22 testis, mated 4-day male    21 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed during late larval stages, during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    9 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9    52 white prepupae new    55 white prepupae 12hr    53 white prepupae 24hr    32 pupae 2d postWPP    24 pupae 3d postWPP    10 pupae 4d postWPP    10 adult male 01day    9 adult male 05day    7 adult male 30day    5 adult female 01day    7 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    9 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9  (52) white prepupae new  (55) white prepupae 12hr  (53) white prepupae 24hr  (32) pupae 2d postWPP    24 pupae 3d postWPP    10 pupae 4d postWPP    10 adult male 01day    9 adult male 05day    7 adult male 30day    5 adult female 01day    7 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    9 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9    52 white prepupae new    55 white prepupae 12hr    53 white prepupae 24hr    32 pupae 2d postWPP    24 pupae 3d postWPP    10 pupae 4d postWPP    10 adult male 01day    9 adult male 05day    7 adult male 30day    5 adult female 01day    7 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    9 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9    52 white prepupae new    55 white prepupae 12hr    53 white prepupae 24hr    32 pupae 2d postWPP    24 pupae 3d postWPP    10 pupae 4d postWPP    10 adult male 01day    9 adult male 05day    7 adult male 30day    5 adult female 01day    7 adult female 05day    7 adult female 30day    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    9 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9    52 white prepupae new    55 white prepupae 12hr    53 white prepupae 24hr    32 pupae 2d postWPP    24 pupae 3d postWPP    10 pupae 4d postWPP    10 adult male 01day    9 adult male 05day    7 adult male 30day    5 adult female 01day    7 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    9 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9  (52) white prepupae new  (55) white prepupae 12hr  (53) white prepupae 24hr  32 pupae 2d postWPP    24 pupae 3d postWPP    10 pupae 4d postWPP    10 adult male 01day    9 adult male 05day    7 adult male 30day    5 adult female 01day    7 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    9 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9    52 white prepupae new    55 white prepupae 12hr    53 white prepupae 24hr    32 pupae 2d postWPP    24 pupae 3d postWPP    10 pupae 4d postWPP    10 adult male 01day    9 adult male 05day    7 adult male 30day    5 adult female 01day    7 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    5 embryo 02-04hr    2 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    9 embryo 12-14hr    7 embryo 14-16hr    3 embryo 16-18hr    4 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    1 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9    52 white prepupae new    55 white prepupae 12hr    53 white prepupae 24hr    32 pupae 2d postWPP    24 pupae 3d postWPP    10 pupae 4d postWPP    10 adult male 01day    9 adult male 05day    7 adult male 30day    5 adult female 01day    7 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    2 embryonic 1182-4H    8 embryonic GM2    5 embryonic Kc167    7 embryonic S1    5 embryonic S3    1 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    3 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    7 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    6 CNS ML-DmBG1-c1    10 CNS ML-DmBG2-c2    10 tumorous blood cells mbn2    3 ovary fGS/OSS    21 ovary OSC    16 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    2 embryonic 1182-4H    8 embryonic GM2    5 embryonic Kc167    7 embryonic S1    5 embryonic S3    1 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    3 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    7 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    6 CNS ML-DmBG1-c1    10 CNS ML-DmBG2-c2    10 tumorous blood cells mbn2    3 ovary fGS/OSS    21 ovary OSC    16 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    2 embryonic 1182-4H    8 embryonic GM2    5 embryonic Kc167    7 embryonic S1    5 embryonic S3    1 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    3 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    7 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    6 CNS ML-DmBG1-c1    10 CNS ML-DmBG2-c2    10 tumorous blood cells mbn2    3 ovary fGS/OSS    21 ovary OSC    16 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    2 embryonic 1182-4H    8 embryonic GM2    5 embryonic Kc167    7 embryonic S1    5 embryonic S3    1 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    3 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    7 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    6 CNS ML-DmBG1-c1    10 CNS ML-DmBG2-c2    10 tumorous blood cells mbn2    3 ovary fGS/OSS    21 ovary OSC    16 ovary OSS    11 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    2 embryonic 1182-4H    8 embryonic GM2    5 embryonic Kc167    7 embryonic S1    5 embryonic S3    1 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    3 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    7 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    6 CNS ML-DmBG1-c1    10 CNS ML-DmBG2-c2    10 tumorous blood cells mbn2    3 ovary fGS/OSS    21 ovary OSC    16 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    2 embryonic 1182-4H    8 embryonic GM2    5 embryonic Kc167    7 embryonic S1    5 embryonic S3    1 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    3 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    7 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    6 CNS ML-DmBG1-c1    10 CNS ML-DmBG2-c2    10 tumorous blood cells mbn2    3 ovary fGS/OSS    21 ovary OSC    16 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    2 embryonic 1182-4H    8 embryonic GM2    5 embryonic Kc167    7 embryonic S1    5 embryonic S3    1 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    3 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    7 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    6 CNS ML-DmBG1-c1    10 CNS ML-DmBG2-c2    10 tumorous blood cells mbn2    3 ovary fGS/OSS    21 ovary OSC    16 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    2 embryonic 1182-4H    8 embryonic GM2    5 embryonic Kc167    7 embryonic S1    5 embryonic S3    1 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    3 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    10 wing disc ML-DmD21    7 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    4 antennal disc ML-DmD20-c5    6 mixed discs ML-DmD4-c1    6 CNS ML-DmBG1-c1    10 CNS ML-DmBG2-c2    10 tumorous blood cells mbn2    3 ovary fGS/OSS    21 ovary OSC    16 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    16 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    47 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    61 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    30 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    28 Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    16 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3  (47) Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult  (61) Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult  (30) Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (28) Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    16 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    47 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    61 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    30 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    28 Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    16 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    47 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    61 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    30 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    28 Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    16 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    47 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    61 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    30 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    28 Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    16 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3  (47) Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult  (61) Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult  30 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  28 Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    16 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    47 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    61 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    30 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    28 Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    16 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    47 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    61 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    30 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    28 Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_25
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030183 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG15309-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG15309GD8970 Phenotype manifest in Allele
Classical Alleles ( 6 )
For All Classical Alleles Show
Allele of CG15309 Class Mutagen Stocks Known lesion CG15309BG00301 1 -- CG15309CB-5649-3 1 -- CG15309EY23419 P-element activity 1 -- CG15309BG02088 P-element activity 0 -- CG15309GG01605 0 -- CG15309GG01670 0 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG15309 Class Mutagen Stocks Known lesion CG15309GD8970 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG15309HM05209 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG15309KK108714 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8970} NA P{KK108714} NA P{TRiP.HM05209} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{GT1}CG15309BG00301 NA P{GT1}CG15309BG02088 NA P{RS3}CG15309CB-5649-3 NA insertion of mobile activating element P{EPgy2}CG15309EY23419 NA P{Mae-UAS.6.11}CG15309GG01605 NA P{Mae-UAS.6.11}CG15309GG01670 NA
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
	There is no information supporting a cellular component or molecular function term for this gene. (Based on a review of available data before: 2006)
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
imaginal disc-derived wing morphogenesis inferred from mutant phenotype (Carreira et al., 2011)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG15309 - CG2065 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG15309 - CG7033 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG15309 - Hsp23 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) CG15309 - Hsp26 experimental knowledge based (Guruharsha et al., 2011) CG15309 - Tcp-1η anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG15309 - ref(2)P experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG15309 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 58384 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0030183 DroID - A comprehensive database of gene and protein interactions. • FBgn0030183 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31949
Orthologs
OrthoDB Orthologs (49) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6549K8 Dipteran inclusive ortholog search EOG61VKCF Insect inclusive ortholog search EOG62V7D1 Arthropod inclusive ortholog search EOG6FN31D Metazoa inclusive ortholog search EOG6F5575
Orthologs in Drosophila Species (EOG6549K8)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG15309     Drosophila simulans   Dsim\GD24655 Y   Drosophila sechellia   Dsec\GM11334 Y   Drosophila erecta   Dere\GG18944 Y   Drosophila yakuba   Dyak\GE15414 Y   Drosophila ananassae   Dana\GF19108 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA27919 Y   Drosophila persimilis   Dper\GL22456 Y   Drosophila willistoni   Dwil\GK20038 Y   Drosophila virilis   Dvir\GJ19280 Y   Drosophila mojavensis   Dmoj\GI15523 Y   Drosophila grimshawi   Dgri\GH24074 Y
Orthologs in non-Drosophila Dipterans (EOG61VKCF)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL001532   Anopheles gambiae Malaria mosquito  Agam\AGAP011563   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012944
Orthologs in non-Dipteran Insects (EOG62V7D1)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\Ame.3359   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG018549   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH18422   Atta cephalotes Leafcutter ant  Acep\ACEP10529   Camponotus floridanus Florida carpenter ant  Cflo\CFLO14637   Linepithema humile Argentine ant  Lhum\LH17854   Pogonomyrmex barbatus Red harvester ant  Pbar\PB22827   Solenopsis invicta Red fire ant  Sinv\SINV20768   Acyrthosiphon pisum Pea aphid  Apim\ACYPI007733   Bombyx mori Silkmoth  Bmor\BGIBMGA014100   Pediculus humanus Human body louse  Phum\PHUM116830   Tribolium castaneum Red flour beetle  Tcas\TC006713
Orthologs in non-Insect Arthropods (EOG6FN31D)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_111718   Ixodes scapularis Deer tick  Isca\ISCW011105
Orthologs in non-Arthropod Metazoa (EOG6F5575)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\F37A8.5   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_021688gn   Danio rerio Zebrafish  Drer\ypel1   Danio rerio Zebrafish  Drer\ypel3   Danio rerio Zebrafish  Drer\ENSDARG00000077224   Danio rerio Zebrafish  Drer\ENSDARG00000087258   Xenopus tropicalis Western clawed frog  Xtro\ypel2   Xenopus tropicalis Western clawed frog  Xtro\ypel1   Gallus gallus Domestic chicken  Ggal\YPEL2   Gallus gallus Domestic chicken  Ggal\YPEL4   Gallus gallus Domestic chicken  Ggal\YPEL1   Mus musculus House mouse  Mmus\Ypel1   Mus musculus House mouse  Mmus\Ypel3   Mus musculus House mouse  Mmus\Ypel2   Mus musculus House mouse  Mmus\Ypel4   Rattus norvegicus Norway rat  Rnor\Ypel3   Rattus norvegicus Norway rat  Rnor\LOC100360867   Rattus norvegicus Norway rat  Rnor\Ypel4   Homo sapiens Human  Hsap\YPEL1   Homo sapiens Human  Hsap\YPEL2
Human Orthologs (2)
Gene OMIM HGNC Hsap\YPEL1     Hsap\YPEL2
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD24655 Drosophila sechellia Dsec\GM11334 Drosophila erecta Dere\GG18944 Drosophila yakuba Dyak\GE15414 Drosophila ananassae Dana\GF19108 Drosophila pseudoobscura pseudoobscura Dpse\GA27919 Drosophila persimilis Dper\GL22456 Drosophila willistoni Dwil\GK20038 Drosophila virilis Dvir\GJ19280 Drosophila mojavensis Dmoj\GI15523 Drosophila grimshawi Dgri\GH24074
Stocks & Reagents
Stocks Listed in FlyBase ( 7 )
Bloomington	12481 w1118 P{GT1}CG15309BG00301 29530 y1 v1; P{TRiP.HM05209}attP2 23119 y1 w67c23 P{EPgy2}CG15309EY23419
Kyoto	123731 w1118 P{RS3}CG15309CB-5649-3
VDRC	v101370 P{KK108714}VIE-260B v19388 w1118 P{GD8970}v19388 v45446 w1118; P{GD8970}v45446/TM3
Genomic Clones ( 2 )
	BACR18B11 BACR45E21 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 28 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH10478
Other clones	DPiM_GH10478 MIP35161
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT24732 LP01348 RE13320 RE13384
Other clones	55653 55885 55928 70131 149410 CK01.129B.E7 CK01493 EC22283 EC33817 EK118116 EK164407 EK183964 EK184041 EK197319 EK254753 EK305005 EN00307 EP14328 ESG017c.E21.3_B11 ESG0111c.B21_D02 ESG0119c.B21_C04
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0030183 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31949
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG15309 BcDNA:GH10478 (FlyBase, 1996-)
Additional comments	Source for merge of CG15309 BcDNA:GH10478 was a shared cDNA (date:020730). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132381 NM_001103466 NM_001272465 NM_001272466 NM_001272467 RefSeq (Proteins) • NP_572609 NP_001096936 NP_001259394 NP_001259395 NP_001259396 DDBJ / EMBL / GenBank • AAF46560 AAL25309 ABW09382 AGB95237 AGB95238 AGB95239 AI113946 AW940364 AY060270 Entrez Gene - A searchable database of RefSeq genes. • 31949 UniProtKB/Swiss-Prot • Q9W2X7
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Yippee-like protein (IPR004910)
Linkouts
	BioGRID - A database of protein and genetic interactions • 58384 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0030183 DroID - A comprehensive database of gene and protein interactions. • FBgn0030183 DRSC - Results from RNAi screens. • FBgn0030183 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030183 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG15309-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0030183 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31949 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31949 modMine - Data generated by the modENCODE project. • FBgn0030183
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	BcDNA:GH10478   CG15309 (Quinones-Coello, 2007, Levis et al., 2011.12.16, Mensch et al., 2008, Keleman et al., 2009.8.5, Juhász et al., 2007, Perkins et al., 2009, Reis et al., 2010, Carreira et al., 2011)
Name Synonym
Secondary FlyBase IDs
	FBgn0046798
References ( 20 )
Research paper	Carreira et al., 2011, BMC Dev. Biol. 11: 32 Genetic basis of wing morphogenesis in Drosophila: sexual dimorphism and non-allometric effects of shape variation. [FBrf0214273] Reis et al., 2010, PLoS Genet. 6(11): e1001206 A buoyancy-based screen of Drosophila larvae for fat-storage mutants reveals a role for sir2 in coupling fat storage to nutrient availability. [FBrf0212335] Mensch et al., 2008, BMC Dev. Biol. 8: 78 Identifying candidate genes affecting developmental time in Drosophila melanogaster: pervasive pleiotropy and gene-by-environment interaction. [FBrf0205813] Juhász et al., 2007, Cell Death Differ. 14(6): 1181--1190 Gene expression profiling identifies FKBP39 as an inhibitor of autophagy in larval Drosophila fat body. [FBrf0194904]
Supplementary material	Guruharsha et al., 2011, Cell 147(3): Table S3. [FBrf0218395] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Quinones-Coello, 2007, Genetics 175(3): Supplemental Table 1. List of genes associated with protein or enhancer traps. [FBrf0200393]
Personal communication to FlyBase	Levis et al., 2011.12.16, Insertion site data for additional GT1 (BG) lines. Insertion site data for additional GT1 (BG) lines. [FBrf0217018] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Perkins et al., 2009, Update to TRiP stock collection. Update to TRiP stock collection. [FBrf0208864] Bellen, 2007.2.7, batch722.xml batch722.xml [FBrf0191800] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946] FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]
Curated genome annotation	FamiliarityBreedsContempt, 1999.11, [Automatic annotations performed at the Celera Jamboreee.] [Automatic annotations performed at the Celera Jamboreee.] [FBrf0126705]