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Gene Dmel\tomosyn

General Information
Symbol	Dmel\tomosyn	Species	D. melanogaster
Name	tomosyn	Annotation symbol	CG17762
Feature type	protein_coding_gene	FlyBase ID	FBgn0030412
Gene Model Status	Current	Stock availability	8 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	11B6-11B7	Sequence location	X:12,525,653..12,547,377 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene tomosyn is referred to in FlyBase by the symbol Dmel\tomosyn (CG17762, FBgn0030412). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: syntaxin-1 binding. There is experimental evidence that it is involved in the biological process: neurogenesis. 9 alleles are reported. The phenotype of these alleles is annotated with: intersegmental nerve. It has 7 annotated transcripts and 7 annotated polypeptides. Protein features are: Lethal giant larvae homologue 2; Lethal(2) giant larvae protein; Synaptobrevin; WD40 repeat; WD40 repeat, conserved site; WD40 repeat, subgroup; WD40 repeat-like-containing domain; WD40/YVTN repeat-like-containing domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in adult male stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult central nervous system, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1635638_s_at completely aligns to an exonic region common to each of the 6 FlyBase-annotated transcript isoforms of tomosyn. Gene sequence location is X:12525653..12547377.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2012_01	References Chen et al., 2011, Proc. Natl. Acad. Sci. U.S.A. 108(45): 18482--18487 Sequence features BKN21123 HFA19842 HFA19692 HFA19782 HFA19365
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 11B6-11B7   Limits computationally determined from genome sequence between P{EP}CG11138EP1313 and P{EP}EP1632&P{EP}EP1449
Experimentally Determined Cytological Location
Cytogenetic map Notes References 11B-11B   Determined by comparing Celera genomic sequence with sequence from BDGP BAC and P1 clones.   (Lloyd et al., 2000)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\tomosyn for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) tomosyn-RC FBtr0073678  NM_167329   5421   1470 tomosyn-RD FBtr0073679  NM_167330   5421   1470 tomosyn-RF FBtr0300375  NM_001169264   5177   1470 tomosyn-RG FBtr0300376  NM_001169265   5177   1470 tomosyn-RH FBtr0307898     4529   1254 tomosyn-RI FBtr0307899     5217   1470 tomosyn-RJ FBtr0307900     4569   1254
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein tomosyn-PC   FBpp0073511   158.5   1470   7.05     NP_727629   AAF48187 tomosyn-PD   FBpp0073512   159.3   1470   7.34     NP_727630   AAF48189 tomosyn-PF   FBpp0289604   158.5   1470   7.05     NP_001162735   ACZ95270 tomosyn-PG   FBpp0289605   159.3   1470   7.34     NP_001162736   ACZ95271 tomosyn-PH   FBpp0300332   136.5   1254   6.85       tomosyn-PI   FBpp0300333   158.5   1470   7.05       tomosyn-PJ   FBpp0300334   136.5   1254   6.85
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • WD40/YVTN repeat-like-containing domain (IPR015943) Lethal(2) giant larvae protein (IPR000664) Synaptobrevin (IPR001388) WD40 repeat (IPR001680) WD40 repeat-like-containing domain (IPR011046) Lethal giant larvae homologue 2 (IPR013577) WD40 repeat, conserved site (IPR019775) WD40 repeat, subgroup (IPR019781)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA567498   AA567527   AA697715   AA698625   AA816959   AA817290   AE014298 AAF48187   AE014298 AAF48189   AE014298 ACZ95270   AE014298 ACZ95271   AI062251   AI062909   AI107041   AI292558   AI292615   AI292633   AI387821   AI512899   AI513526   AI531440   AI542520   AQ025417   AQ025501   AW941811   AW942615   AW943757   AY075341   AY094794 AAM11147   AY094913 AAM11266   BG637647   BG638313   BG639944   BI566470   BI571287   BI571352   BI571651   BI576721   BI581796   BI582920   BI583235   BI583241   BI590963   BI592695   BI612452   BI612963   BP557644   BP557645   BT003569 AAO39573   BT021357   CK134855   CO177394   CO188439   CO270641   CO274568   CO274694   CO280763   CO295248   CO298342   CO304032   CO304159   CO310788   CO312196   CO314564   CO314982   CO326609   CO342474   CO343688   CO343705   CZ482089   CZ488417   EC057028   EC060628   EC064161   EC065147   EC065771   EC073333   EC076555   EC087582   EC200087   EC202235   EC202236   EC202929   EC202990   EC209752   EC211052   EC213642   EC218483   EC231802   EC234423   EC236891   EC237605   EC246985   EC252811   EC254851   EC257574   GH944836   GH959596   GH960717   GH968140   GH980855   GH982918
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q86NY8 Q8SX12 Q8SX79 Q9VYK4 Q9VYK5 Q9VYK6
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0030412    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0030412 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in adult male stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0030412 expression level Developmental Stage   Expression Level embryo 00-02hr    1080 embryo 02-04hr    113 embryo 04-06hr    46 embryo 06-08hr    63 embryo 08-10hr    93 embryo 10-12hr    223 embryo 12-14hr    354 embryo 14-16hr    573 embryo 16-18hr    842 embryo 18-20hr    1198 embryo 20-22hr    1359 embryo 22-24hr    1458 larva L1    1572 larva L2    677 larva L3 12hr old    419 larva L3 puffstage 1-2    448 larva L3 puffstage 3-6    759 larva L3 puffstage 7-9    934 white prepupae new    1294 white prepupae 12hr    1100 white prepupae 24hr    955 pupae 2d postWPP    1228 pupae 3d postWPP    1655 pupae 4d postWPP    1311 adult male 01day    1220 adult male 05day    1314 adult male 30day    1403 adult female 01day    1132 adult female 05day    1154 adult female 30day    1100 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1080) embryo 02-04hr  (113) embryo 04-06hr    46 embryo 06-08hr    63 embryo 08-10hr    93 embryo 10-12hr  (223) embryo 12-14hr  (354) embryo 14-16hr  (573) embryo 16-18hr  (842) embryo 18-20hr  (1198) embryo 20-22hr  (1359) embryo 22-24hr  (1458) larva L1  (1572) larva L2  (677) larva L3 12hr old  (419) larva L3 puffstage 1-2  (448) larva L3 puffstage 3-6  (759) larva L3 puffstage 7-9  (934) white prepupae new  (1294) white prepupae 12hr  (1100) white prepupae 24hr  (955) pupae 2d postWPP  (1228) pupae 3d postWPP  (1655) pupae 4d postWPP  (1311) adult male 01day  (1220) adult male 05day  (1314) adult male 30day  (1403) adult female 01day  (1132) adult female 05day  (1154) adult female 30day  (1100) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1080 embryo 02-04hr    113 embryo 04-06hr    46 embryo 06-08hr    63 embryo 08-10hr    93 embryo 10-12hr    223 embryo 12-14hr    354 embryo 14-16hr    573 embryo 16-18hr    842 embryo 18-20hr    1198 embryo 20-22hr    1359 embryo 22-24hr  1458 larva L1  (1572) larva L2    677 larva L3 12hr old    419 larva L3 puffstage 1-2    448 larva L3 puffstage 3-6    759 larva L3 puffstage 7-9    934 white prepupae new    1294 white prepupae 12hr    1100 white prepupae 24hr    955 pupae 2d postWPP    1228 pupae 3d postWPP  (1655) pupae 4d postWPP    1311 adult male 01day    1220 adult male 05day    1314 adult male 30day  1403 adult female 01day    1132 adult female 05day    1154 adult female 30day    1100 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1080 embryo 02-04hr    113 embryo 04-06hr    46 embryo 06-08hr    63 embryo 08-10hr    93 embryo 10-12hr    223 embryo 12-14hr    354 embryo 14-16hr    573 embryo 16-18hr    842 embryo 18-20hr    1198 embryo 20-22hr    1359 embryo 22-24hr    1458 larva L1    1572 larva L2    677 larva L3 12hr old    419 larva L3 puffstage 1-2    448 larva L3 puffstage 3-6    759 larva L3 puffstage 7-9    934 white prepupae new    1294 white prepupae 12hr    1100 white prepupae 24hr    955 pupae 2d postWPP    1228 pupae 3d postWPP    1655 pupae 4d postWPP    1311 adult male 01day    1220 adult male 05day    1314 adult male 30day    1403 adult female 01day    1132 adult female 05day    1154 adult female 30day    1100 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1080 embryo 02-04hr    113 embryo 04-06hr    46 embryo 06-08hr    63 embryo 08-10hr    93 embryo 10-12hr    223 embryo 12-14hr    354 embryo 14-16hr    573 embryo 16-18hr    842 embryo 18-20hr    1198 embryo 20-22hr    1359 embryo 22-24hr    1458 larva L1    1572 larva L2    677 larva L3 12hr old    419 larva L3 puffstage 1-2    448 larva L3 puffstage 3-6    759 larva L3 puffstage 7-9    934 white prepupae new    1294 white prepupae 12hr    1100 white prepupae 24hr    955 pupae 2d postWPP    1228 pupae 3d postWPP    1655 pupae 4d postWPP    1311 adult male 01day    1220 adult male 05day    1314 adult male 30day    1403 adult female 01day    1132 adult female 05day    1154 adult female 30day    1100 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0030412 expression level Developmental Stage   Expression Level embryo 00-02hr    1080 embryo 02-04hr    113 embryo 04-06hr    46 embryo 06-08hr    63 embryo 08-10hr    93 embryo 10-12hr    223 embryo 12-14hr    354 embryo 14-16hr    573 embryo 16-18hr    842 embryo 18-20hr    1198 embryo 20-22hr    1359 embryo 22-24hr    1458 larva L1    1572 larva L2    677 larva L3 12hr old    419 larva L3 puffstage 1-2    448 larva L3 puffstage 3-6    759 larva L3 puffstage 7-9    934 white prepupae new    1294 white prepupae 12hr    1100 white prepupae 24hr    955 pupae 2d postWPP    1228 pupae 3d postWPP    1655 pupae 4d postWPP    1311 adult male 01day    1220 adult male 05day    1314 adult male 30day    1403 adult female 01day    1132 adult female 05day    1154 adult female 30day    1100 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1080) embryo 02-04hr  113 embryo 04-06hr    46 embryo 06-08hr    63 embryo 08-10hr    93 embryo 10-12hr  (223) embryo 12-14hr  (354) embryo 14-16hr  (573) embryo 16-18hr  (842) embryo 18-20hr  (1198) embryo 20-22hr  (1359) embryo 22-24hr  (1458) larva L1  (1572) larva L2  (677) larva L3 12hr old  (419) larva L3 puffstage 1-2  (448) larva L3 puffstage 3-6  (759) larva L3 puffstage 7-9  (934) white prepupae new  (1294) white prepupae 12hr  (1100) white prepupae 24hr  (955) pupae 2d postWPP  (1228) pupae 3d postWPP  (1655) pupae 4d postWPP  (1311) adult male 01day  (1220) adult male 05day  (1314) adult male 30day  (1403) adult female 01day  (1132) adult female 05day  (1154) adult female 30day  (1100) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1080 embryo 02-04hr    113 embryo 04-06hr    46 embryo 06-08hr    63 embryo 08-10hr    93 embryo 10-12hr    223 embryo 12-14hr    354 embryo 14-16hr    573 embryo 16-18hr    842 embryo 18-20hr    1198 embryo 20-22hr    1359 embryo 22-24hr  1458 larva L1  1572 larva L2    677 larva L3 12hr old    419 larva L3 puffstage 1-2    448 larva L3 puffstage 3-6    759 larva L3 puffstage 7-9    934 white prepupae new    1294 white prepupae 12hr    1100 white prepupae 24hr    955 pupae 2d postWPP    1228 pupae 3d postWPP  1655 pupae 4d postWPP    1311 adult male 01day    1220 adult male 05day    1314 adult male 30day  1403 adult female 01day    1132 adult female 05day    1154 adult female 30day    1100 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1080 embryo 02-04hr    113 embryo 04-06hr    46 embryo 06-08hr    63 embryo 08-10hr    93 embryo 10-12hr    223 embryo 12-14hr    354 embryo 14-16hr    573 embryo 16-18hr    842 embryo 18-20hr    1198 embryo 20-22hr    1359 embryo 22-24hr    1458 larva L1    1572 larva L2    677 larva L3 12hr old    419 larva L3 puffstage 1-2    448 larva L3 puffstage 3-6    759 larva L3 puffstage 7-9    934 white prepupae new    1294 white prepupae 12hr    1100 white prepupae 24hr    955 pupae 2d postWPP    1228 pupae 3d postWPP    1655 pupae 4d postWPP    1311 adult male 01day    1220 adult male 05day    1314 adult male 30day    1403 adult female 01day    1132 adult female 05day    1154 adult female 30day    1100 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1080 embryo 02-04hr    113 embryo 04-06hr    46 embryo 06-08hr    63 embryo 08-10hr    93 embryo 10-12hr    223 embryo 12-14hr    354 embryo 14-16hr    573 embryo 16-18hr    842 embryo 18-20hr    1198 embryo 20-22hr    1359 embryo 22-24hr    1458 larva L1    1572 larva L2    677 larva L3 12hr old    419 larva L3 puffstage 1-2    448 larva L3 puffstage 3-6    759 larva L3 puffstage 7-9    934 white prepupae new    1294 white prepupae 12hr    1100 white prepupae 24hr    955 pupae 2d postWPP    1228 pupae 3d postWPP    1655 pupae 4d postWPP    1311 adult male 01day    1220 adult male 05day    1314 adult male 30day    1403 adult female 01day    1132 adult female 05day    1154 adult female 30day    1100 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0030412    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0030412 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult central nervous system, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0030412 expression level Tissue   Expression Level Larval Central Nervous System    358.375 Larval Midgut    143.2 Larval Hindgut    168.4 Larval Malpighian Tubules    283.2 Larval Fat Body    233.3 Larval Salivary Gland    190.5 Larval Trachea    304.475 Larval Carcass    221.75 Adult Head    324.7 Adult Eye    428.225 Adult Brain    1683.5 Adult Thoracic-Abdominal Ganglion    1393.6 Adult Crop    140.8 Adult Midgut    133.4 Adult Hindgut    140.8 Adult Malpighian Tubules    161.5 Adult Fat Body    153.3 Adult Salivary Gland    200.5 Adult Heart    148.2 Adult VirginFemale Spermatheca    173.2 Adult InseminatedFemale Spermatheca    227.3 Adult Ovary    248.7 Adult Testis    32.7 Adult Male Accessory Gland    735.3 Adult Carcass    109.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    358.375 Larval Midgut    143.2 Larval Hindgut    168.4 Larval Malpighian Tubules    283.2 Larval Fat Body    233.3 Larval Salivary Gland    190.5 Larval Trachea    304.475 Larval Carcass    221.75 Adult Head    324.7 Adult Eye    428.225 Adult Brain  (1683.5) Adult Thoracic-Abdominal Ganglion  (1393.6) Adult Crop    140.8 Adult Midgut    133.4 Adult Hindgut    140.8 Adult Malpighian Tubules    161.5 Adult Fat Body    153.3 Adult Salivary Gland    200.5 Adult Heart    148.2 Adult VirginFemale Spermatheca    173.2 Adult InseminatedFemale Spermatheca    227.3 Adult Ovary    248.7 Adult Testis    32.7 Adult Male Accessory Gland  (735.3) Adult Carcass    109.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    358.375 Larval Midgut    143.2 Larval Hindgut    168.4 Larval Malpighian Tubules    283.2 Larval Fat Body    233.3 Larval Salivary Gland    190.5 Larval Trachea    304.475 Larval Carcass    221.75 Adult Head    324.7 Adult Eye    428.225 Adult Brain  (1683.5) Adult Thoracic-Abdominal Ganglion  (1393.6) Adult Crop    140.8 Adult Midgut    133.4 Adult Hindgut    140.8 Adult Malpighian Tubules    161.5 Adult Fat Body    153.3 Adult Salivary Gland    200.5 Adult Heart    148.2 Adult VirginFemale Spermatheca    173.2 Adult InseminatedFemale Spermatheca    227.3 Adult Ovary    248.7 Adult Testis    32.7 Adult Male Accessory Gland    735.3 Adult Carcass    109.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    358.375 Larval Midgut    143.2 Larval Hindgut    168.4 Larval Malpighian Tubules    283.2 Larval Fat Body    233.3 Larval Salivary Gland    190.5 Larval Trachea    304.475 Larval Carcass    221.75 Adult Head    324.7 Adult Eye    428.225 Adult Brain    1683.5 Adult Thoracic-Abdominal Ganglion    1393.6 Adult Crop    140.8 Adult Midgut    133.4 Adult Hindgut    140.8 Adult Malpighian Tubules    161.5 Adult Fat Body    153.3 Adult Salivary Gland    200.5 Adult Heart    148.2 Adult VirginFemale Spermatheca    173.2 Adult InseminatedFemale Spermatheca    227.3 Adult Ovary    248.7 Adult Testis    32.7 Adult Male Accessory Gland    735.3 Adult Carcass    109.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0030412 expression level Tissue   Expression Level Larval Central Nervous System    358.375 Larval Midgut    143.2 Larval Hindgut    168.4 Larval Malpighian Tubules    283.2 Larval Fat Body    233.3 Larval Salivary Gland    190.5 Larval Trachea    304.475 Larval Carcass    221.75 Adult Head    324.7 Adult Eye    428.225 Adult Brain    1683.5 Adult Thoracic-Abdominal Ganglion    1393.6 Adult Crop    140.8 Adult Midgut    133.4 Adult Hindgut    140.8 Adult Malpighian Tubules    161.5 Adult Fat Body    153.3 Adult Salivary Gland    200.5 Adult Heart    148.2 Adult VirginFemale Spermatheca    173.2 Adult InseminatedFemale Spermatheca    227.3 Adult Ovary    248.7 Adult Testis    32.7 Adult Male Accessory Gland    735.3 Adult Carcass    109.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    358.375 Larval Midgut    143.2 Larval Hindgut    168.4 Larval Malpighian Tubules    283.2 Larval Fat Body    233.3 Larval Salivary Gland    190.5 Larval Trachea    304.475 Larval Carcass    221.75 Adult Head    324.7 Adult Eye    428.225 Adult Brain  (1683.5) Adult Thoracic-Abdominal Ganglion  (1393.6) Adult Crop    140.8 Adult Midgut    133.4 Adult Hindgut    140.8 Adult Malpighian Tubules    161.5 Adult Fat Body    153.3 Adult Salivary Gland    200.5 Adult Heart    148.2 Adult VirginFemale Spermatheca    173.2 Adult InseminatedFemale Spermatheca    227.3 Adult Ovary    248.7 Adult Testis    32.7 Adult Male Accessory Gland  735.3 Adult Carcass    109.1 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    358.375 Larval Midgut    143.2 Larval Hindgut    168.4 Larval Malpighian Tubules    283.2 Larval Fat Body    233.3 Larval Salivary Gland    190.5 Larval Trachea    304.475 Larval Carcass    221.75 Adult Head    324.7 Adult Eye    428.225 Adult Brain  1683.5 Adult Thoracic-Abdominal Ganglion  1393.6 Adult Crop    140.8 Adult Midgut    133.4 Adult Hindgut    140.8 Adult Malpighian Tubules    161.5 Adult Fat Body    153.3 Adult Salivary Gland    200.5 Adult Heart    148.2 Adult VirginFemale Spermatheca    173.2 Adult InseminatedFemale Spermatheca    227.3 Adult Ovary    248.7 Adult Testis    32.7 Adult Male Accessory Gland    735.3 Adult Carcass    109.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    358.375 Larval Midgut    143.2 Larval Hindgut    168.4 Larval Malpighian Tubules    283.2 Larval Fat Body    233.3 Larval Salivary Gland    190.5 Larval Trachea    304.475 Larval Carcass    221.75 Adult Head    324.7 Adult Eye    428.225 Adult Brain    1683.5 Adult Thoracic-Abdominal Ganglion    1393.6 Adult Crop    140.8 Adult Midgut    133.4 Adult Hindgut    140.8 Adult Malpighian Tubules    161.5 Adult Fat Body    153.3 Adult Salivary Gland    200.5 Adult Heart    148.2 Adult VirginFemale Spermatheca    173.2 Adult InseminatedFemale Spermatheca    227.3 Adult Ovary    248.7 Adult Testis    32.7 Adult Male Accessory Gland    735.3 Adult Carcass    109.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    324.7   NA  Eye    428.225   NA  Brain    1683.5   358.375  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    1393.6   NA  Crop    140.8   143.2  Midgut    133.4   168.4  Hindgut    140.8   283.2  Malpighian Tubules    161.5   233.3  Fat Body    153.3   190.5  Salivary Gland    200.5   NA  Heart    148.2   304.475  Trachea    NA   NA  VirginFemale Spermatheca    173.2   NA  InseminatedFemale Spermatheca    227.3   NA  Ovary    248.7   NA  Testis    32.7   NA  Male Accessory Gland    735.3   221.75  Carcass    109.1 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_10
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030412 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG17762-RB
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL41407 tomosynGD8641 semi-lethal | pupal stage, with Scer\GAL4pnr-MD237 tomosynGD8641 Other Phenotypes Allele neuroanatomy defective | larval stage, with Scer\GAL41407 tomosynGD8641 neuroanatomy defective | larval stage, with Scer\GAL4elav-C155 tomosynEP1359 tomosynEP1562 Phenotype manifest in Allele anterior fascicle & synapse, with Scer\GAL4elav-C155 tomosynEP1359 embryonic/larval neuroblast | larval stage, with Scer\GAL41407 tomosynGD8641 ganglion mother cell | larval stage, with Scer\GAL41407 tomosynGD8641 intersegmental nerve, with Scer\GAL4elav-C155 tomosynEP1359 tomosynEP1562
Classical Alleles ( 6 )
For All Classical Alleles Show
Allele of tomosyn Class Mutagen Stocks Known lesion tomosyne04338 piggyBac transposase 1 -- tomosynEP1359 P-element activity 1 Yes tomosynEP1562 P-element activity 1 Yes tomosynEY00140 1 -- tomosynf05789 piggyBac transposase 1 -- tomosynG0294 P-element activity 0 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of tomosyn Class Mutagen Stocks Known lesion tomosynGD8641 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes tomosynJF03414 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes tomosynGD9460 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8641} NA P{GD9460} NA P{TRiP.JF03414} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{RB}tomosyne04338 NA PBac{WH}tomosynf05789 NA insertion of mobile activating element P{EP}tomosynEP1359 NA P{EP}tomosynEP1562 NA P{EPgy2}tomosynEY00140 NA insertion of enhancer trap P{lacW}tomosynG0294 No
Gene Ontology: Function, Process & Cellular Component ( 9 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
neurogenesis inferred from mutant phenotype (Neumüller et al., 2011)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 8 terms )
Molecular Function
CV term Evidence References
syntaxin-1 binding inferred from sequence or structural similarity with EMBL:AF118889 (FlyBase, 1992-)
Biological Process
CV term Evidence References
establishment or maintenance of cell polarity non-traceable author statement (Humbert et al., 2003) neurotransmitter secretion non-traceable author statement (Lloyd et al., 2000) synaptic vesicle exocytosis inferred from sequence or structural similarity (Littleton, 2000) synaptic vesicle priming non-traceable author statement (Lloyd et al., 2000) vesicle-mediated transport inferred from electronic annotation with InterPro:IPR001388 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
integral to membrane inferred from electronic annotation with InterPro:IPR001388 (FlyBase Curators et al., 2004-) synaptic vesicle non-traceable author statement (Lloyd et al., 2000)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions tomosyn allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0030412 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32217
Orthologs
Genome-wide drosophilid orthologs	Dana\GF21382 Dere\GG17733 Dgri\GH12594 Dmoj\GI16223 Dper\GL13139 Dpse\GA22963 Dsec\GM11577 Dvir\GJ15915 Dwil\GK25516 Dyak\GE17022
Curated drosophilid orthologs	Dpse\GA14653   Drep\tomosyn
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL006948-PA Aedes aegypti (mosquito) AGAP000009-PA Anopheles gambiae (mosquito) XP_391820.3 Apis mellifera (honey bee) XP_001952670.1 Acyrthosiphon pisum (pea aphid) At5g05570.1 Arabidopsis thaliana (wall cress) 109054 Branchiostoma floridae (lancelet) ENSBTAP00000002496 Bos taurus (bovine) CN05880 Caenorhabditis brenneri (small nematode) CBP03577 Caenorhabditis briggsae (nematode) CE34348 Caenorhabditis elegans (worm) ENSCAFP00000000510 Canis familiaris (dog) ENSCINP00000025699 Ciona intestinalis (sea squirt) JA09714 Caenorhabditis japonica (nematode) cn05057 Cryptococcus neoformans (yeast-like fungus) ENSCPOP00000011710 Cavia porcellus (guinea pig) RP40610 Caenorhabditis remanei (nematode) ENSCSAVP00000017822 Ciona savignyi (sedentary tunicate) 91323 Capitella spl (polychaete worm) DDB0188631 Dictyostelium discoideum (amoeba) 41708 Daphnia pulex (daphnia) ENSDARP00000089501 Danio rerio (zebra fish) ENSECAP00000000396 Equus caballus (horse) ENSGACP00000015360 Gymnopilus aculeatus (mushroom) ENSGALP00000024055 Gallus gallus (chicken) 90752 Hypsipyla robusta (cedar shoot borer) ENSP00000321826 Homo sapiens (human) ISCW010700-PA Ixodes scapularis (deer tick) KLLA0E06425g Kluyveromyces lactis (yeast) 154747 Lottia gigantea (owl limpet) 22689 Monocosta brevicollis (choanoflagellate) ENSMODP00000021045 Monodelphis domestica (gray opossum) ENSMMUP00000022479 Macaca mulatta (rhesus monkey) ENSMUSP00000101195 Mus musculus (house mouse) 248457 Nematostella vectensis (starlet anemone) XP_001600901.1 Nasonia vitripennis (wasp) ENSOANP00000019492 Ornithorynchus anatinus (platypus) ENSORLP00000025337 Oryzias latipes (japanese killifish) LOC_Os04g47700.1 Oryza sativa (asian rice) 160319 Physcomitrella patens (moss) ENSPPYP00000019124 Pongo pygmaeus (orangutan) 75593 Phytophthora ramorum (sudden oak death pathogen) 141257 Phytophthora sojae (root rot pathogen) 227015 Populus trichocarpa (black cottonwood) 765583 Populus trichocarpa (black cottonwood) ENSPTRP00000031893 Pan troglodytes (chimpanzee) ENSRNOP00000049322 Rattus norvegicus (norway rat) 5057692 Sorghum bicolor (sorghum) YPR032W Saccharomyces cerevisiae (budding yeast) Smp_128490 Schistosoma mansoni (trematode parasite) 25442 Trichoplax adhaerens (metazoa) XP_968585.2 Tribolium castaneum (red flour beetle) ENSTNIP00000015218 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000007380 Takifugu rubripes (pufferfish Takifugu) YALI0D19096g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV15207 LH14196 ISCW010700 FBgn0234508 FBgn0227475 FBgn0203102 FBgn0166520 JGI_V11_41708 FBgn0244365 FBgn0150745 FBgn0138972 FBgn0120073 FBgn0109955 FBgn0098384 BGIBMGA011340 BGIBMGA011339 ACYPI000767 GB11085 AGAP000009 AAEL006948 PB20946 PHUM212560 GLEAN_01102
Stocks & Reagents
Stocks Listed in FlyBase ( 8 )
Bloomington	11357 w1118 P{EP}tomosynEP1359 31980 y1 v1; P{TRiP.JF03414}attP2 15002 y1 w67c23 P{EPgy2}tomosynEY00140
Harvard	- PBac{RB}tomosyne04338 - PBac{WH}tomosynf05789
Kyoto	122043 w1118 P{EP}tomosynEP1562
VDRC	v43629 w1118; P{GD8641}v43629 v43630 w1118; P{GD8641}v43630/CyO
Genomic Clones ( 3 )
	BACR23O09 BACR39P03 BACR48G08 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 80 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH15485 LD21875 LD44990 LP14866 RH19475
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH01394 GH02280 GH06328 GH15558 GH15578 GH18483 GH26650 HL01401 HL03031 HL05354 RH06129 RH06209 RH06916 RH10457 RH21344 RH21778 RH21784 RH33342 RH36021 RH41324 RH41988 SD02480 SD08866 SD09084
Other clones	13345 29838 41423 48474 54357 55786 71439 79087 99921 101548 102424 103458 106018 118003 119034 120548 124175 214277.14 214281.13 214415.8 CK01.17B.F12 CK01.65C.B4 CK01.128C.D1 EK040206 EK053338 EK099613 EK114507 EK115140 EK154813 EK172814 EK209042 EK222523 EK228044 EK237027 EK238648 EK243463 EK244016 EP04312 EP14960 EP17831 EP17853 FGM310D10 HL01351 LD22521 RH04658 RP004215673 RP004235759 RP004237610 RP004459152 RP004543767 RP004555687
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0030412 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32217
Antibody Information
	polyclonal (Chen et al., 2011)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: tomosyn CG17762 (Verstreken and Bellen, 2000.9.4)
Source for database merge of	Source for merge of: tomosyn BcDNA:RH19475 (FlyBase, 1996-) Source for merge of: tomosyn CG2205 (FlyBase, 1996-) Source for merge of: tomosyn CG11056 (FlyBase Genome Annotators, 2002-2003)
Additional comments	mir-970 is located within tomosyn. (Stark et al., 2007) Annotations CG17762 and CG11056, CG2205 merged as CG17762 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003) Source for merge of tomosyn BcDNA:RH19475 was a shared cDNA (date:030728). (FlyBase, 1996-) Source for merge of tomosyn CG2205 was a shared cDNA (date:010720). (FlyBase, 1996-)
Other Comments
	dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology. (Kiger et al., 2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_167329 NM_167330 NM_001169264 NM_001169265 RefSeq (Proteins) • NP_727629 NP_727630 NP_001162735 NP_001162736 DDBJ / EMBL / GenBank • AA816959 AAF48187 AAF48188 AAF48189 AAF48190 AAM11147 AAM11266 AAO39573 ACZ95270 ACZ95271 AI292558 AI512899 AQ025417 AQ025501 AW941811 AW942615 AW943757 AY075341 AY094794 AY094913 BI581796 BT003569 CZ482089 CZ488417 Entrez Gene - A searchable database of RefSeq genes. • 32217 UniProtKB/TrEMBL • Q8SX12 Q8SX79 Q9VYK4 Q9VYK5 Q9VYK6 Q86NY8
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • WD40/YVTN repeat-like-containing domain (IPR015943) Lethal(2) giant larvae protein (IPR000664) Synaptobrevin (IPR001388) WD40 repeat (IPR001680) WD40 repeat-like-containing domain (IPR011046) Lethal giant larvae homologue 2 (IPR013577) WD40 repeat, conserved site (IPR019775) WD40 repeat, subgroup (IPR019781)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0030412 DRSC - Results from RNAi screens. • FBgn0030412 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030412 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG17762-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0030412 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32217 InParanoid A subset of ortholog calls from InParanoid. • AAEL006948-PA Aedes aegypti (mosquito) AGAP000009-PA Anopheles gambiae (mosquito) XP_391820.3 Apis mellifera (honey bee) XP_001952670.1 Acyrthosiphon pisum (pea aphid) At5g05570.1 Arabidopsis thaliana (wall cress) 109054 Branchiostoma floridae (lancelet) ENSBTAP00000002496 Bos taurus (bovine) CN05880 Caenorhabditis brenneri (small nematode) CBP03577 Caenorhabditis briggsae (nematode) CE34348 Caenorhabditis elegans (worm) ENSCAFP00000000510 Canis familiaris (dog) ENSCINP00000025699 Ciona intestinalis (sea squirt) JA09714 Caenorhabditis japonica (nematode) cn05057 Cryptococcus neoformans (yeast-like fungus) ENSCPOP00000011710 Cavia porcellus (guinea pig) RP40610 Caenorhabditis remanei (nematode) ENSCSAVP00000017822 Ciona savignyi (sedentary tunicate) 91323 Capitella spl (polychaete worm) DDB0188631 Dictyostelium discoideum (amoeba) 41708 Daphnia pulex (daphnia) ENSDARP00000089501 Danio rerio (zebra fish) ENSECAP00000000396 Equus caballus (horse) ENSGACP00000015360 Gymnopilus aculeatus (mushroom) ENSGALP00000024055 Gallus gallus (chicken) 90752 Hypsipyla robusta (cedar shoot borer) ENSP00000321826 Homo sapiens (human) ISCW010700-PA Ixodes scapularis (deer tick) KLLA0E06425g Kluyveromyces lactis (yeast) 154747 Lottia gigantea (owl limpet) 22689 Monocosta brevicollis (choanoflagellate) ENSMODP00000021045 Monodelphis domestica (gray opossum) ENSMMUP00000022479 Macaca mulatta (rhesus monkey) ENSMUSP00000101195 Mus musculus (house mouse) 248457 Nematostella vectensis (starlet anemone) XP_001600901.1 Nasonia vitripennis (wasp) ENSOANP00000019492 Ornithorynchus anatinus (platypus) ENSORLP00000025337 Oryzias latipes (japanese killifish) LOC_Os04g47700.1 Oryza sativa (asian rice) 160319 Physcomitrella patens (moss) ENSPPYP00000019124 Pongo pygmaeus (orangutan) 75593 Phytophthora ramorum (sudden oak death pathogen) 141257 Phytophthora sojae (root rot pathogen) 227015 Populus trichocarpa (black cottonwood) 765583 Populus trichocarpa (black cottonwood) ENSPTRP00000031893 Pan troglodytes (chimpanzee) ENSRNOP00000049322 Rattus norvegicus (norway rat) 5057692 Sorghum bicolor (sorghum) YPR032W Saccharomyces cerevisiae (budding yeast) Smp_128490 Schistosoma mansoni (trematode parasite) 25442 Trichoplax adhaerens (metazoa) XP_968585.2 Tribolium castaneum (red flour beetle) ENSTNIP00000015218 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000007380 Takifugu rubripes (pufferfish Takifugu) YALI0D19096g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32217 modMine - Data generated by the modENCODE project. • FBgn0030412 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV15207 LH14196 ISCW010700 FBgn0234508 FBgn0227475 FBgn0203102 FBgn0166520 JGI_V11_41708 FBgn0244365 FBgn0150745 FBgn0138972 FBgn0120073 FBgn0109955 FBgn0098384 BGIBMGA011340 BGIBMGA011339 ACYPI000767 GB11085 AGAP000009 AAEL006948 PB20946 PHUM212560 GLEAN_01102
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	BcDNA:RH19475   CG2205 (Peter et al., 2002, ) CG11056 (Gonzalez et al., 2002, ) CG17762 (Whitfield et al., 2002, Robertson, 2001.5.6, Kraut et al., 2001, Kraut et al., 2001, Perkins et al., 2009) Tomosyn (Kraut et al., 2001, Kraut et al., 2001) tomosyn (Cho et al., 2005, Mack et al., 2006)
Name Synonym	tomosyn (Parrish et al., 2007, Stark et al., 2007)
Secondary FlyBase IDs
	FBgn0030413 FBgn0030414 FBgn0062437
References ( 37 )
Generate a list of	All references relating to this gene ( 37 )
List References by type	Research paper  ( 12 ) Supplementary material  ( 8 ) Review  ( 2 ) Personal communication to FlyBase  ( 5 ) FlyBase analysis  ( 4 ) Letter  ( 1 ) Computer file  ( 3 ) Automatic genome annotation  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 1 )
	Chen et al., 2011, Proc. Natl. Acad. Sci. U.S.A. 108(45): 18482--18487 Tomosyn-dependent regulation of synaptic transmission is required for a late phase of associative odor memory. [FBrf0216684] Show all research papers ...
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	All reviews listed in FlyBase were published before 2010 Show reviews ...