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Gene Dmel\CG12726

General Information
Symbol	Dmel\CG12726	Species	D. melanogaster
Name		Annotation symbol
Feature type	protein_coding_gene	FlyBase ID	FBgn0030487
Gene Model Status	Withdrawn	Stock availability	None publicly available
Genomic Location
Chromosome (arm)		Recombination map
Cytogenetic map	11F8-11F8	Sequence location
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG12726 (FBgn0030487).The gene previously had a gene model which is not supported by current evidence. It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: chitin binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: chitin metabolic process. No alleles are reported. It has no annotated transcripts. Protein features are: Chitin binding domain. Gene has not been localized to the genome sequence.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 11F8-11F8   Limits computationally determined from genome sequence between P{EP}CG1640EP1626 and P{EP}NFATEP1353&P{EP}NFATEP1508
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt)
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence   Name
Mapped Features
Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
Expression Clusters
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030487 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG12726-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG12726 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG12726 Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Disrupted in	Df(1)Exel6246 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
chitin binding inferred from electronic annotation with InterPro:IPR002557 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
chitin metabolic process inferred from electronic annotation with InterPro:IPR002557 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
extracellular region inferred from electronic annotation with InterPro:IPR002557 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG12726 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0030487
Orthologs
Genome-wide drosophilid orthologs	Dana\GF24589 Dmoj\GI14785
Curated drosophilid orthologs
Linkouts
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 0 )
cDNA Clones ( 0 )
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	Original annotation in this location (CG12726) utilized wrong ORF; current ORF (CG34324) supported by conservation across Drosophila species. (FlyBase Genome Annotators, 2007)
Other Comments
	Annotation (CG12726) eliminated in release 5.2 of the genome annotation. (FlyBase Genome Annotators, 2007)
External Crossreferences & Linkouts
Sequence Crossreferences
	UniProtKB/TrEMBL • Q9VYC9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Chitin binding domain (IPR002557)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0030487 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030487 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG12726-RA
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG12726 (Lawniczak and Begun, 2004)
Name Synonym
Secondary FlyBase IDs
References ( 7 )
Research paper	Lawniczak and Begun, 2004, Genome 47(5): 900--910 A genome-wide analysis of courting and mating responses in Drosophila melanogaster females. [FBrf0180322]
Supplementary material	Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
FlyBase analysis	FlyBase Genome Annotators, 2007, Changes affecting gene model number or type in release 5.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 5.2 of the annotated D.melanogaster genome. [FBrf0199252] FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]