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Gene Dmel\Tango2

General Information
Symbol	Dmel\Tango2	Species	D. melanogaster
Name	Transport and Golgi organization 2	Annotation symbol	CG11176
Feature type	protein_coding_gene	FlyBase ID	FBgn0030503
Gene Model Status	Current	Stock availability	2 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	12A8-12A8	Sequence location	X:13,511,022..13,513,240 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Transport and Golgi organization 2 is referred to in FlyBase by the symbol Dmel\Tango2 (CG11176, FBgn0030503). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: Golgi organization; protein secretion. 3 alleles are reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: Protein of unknown function DUF833. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval/adult Malpighian tubules. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult midgut, larval fat body, adult testis. Comments on Affy2 ProbeSet: ProbeSet 1634925_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Tango2. Gene sequence location is X:13511022..13513240.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 12A8-12A8   Limits computationally determined from genome sequence between P{EP}CG1640EP1626 and P{EP}NFATEP1353&P{EP}NFATEP1508
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Tango2 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.39 Low-frequency RNA-Seq exon junction(s) not annotated Gene model reviewed during 5.45 Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Tango2-RA FBtr0073807  NM_132677   1451   283 Tango2-RB FBtr0308644  NM_001258725   1547   340 Tango2-RC FBtr0331722  NM_001272596   1302   283 Tango2-RD FBtr0340395     1622   340
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Tango2-PA   FBpp0073638   31.5   283   6.04     NP_572905   AAF48295 Tango2-PB   FBpp0300867   37.8   340   6.69     NP_001245654   AFH07368 Tango2-PC   FBpp0304111   31.5   283   6.04     NP_001259525   AGB95367 Tango2-PD   FBpp0309341   37.8   340   6.69
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Protein of unknown function DUF833 (IPR008551)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA202432   AE014298 AAF48295   AE014298 AFH07368   AE014298 AGB95367   AI259224   AW941513   AY069312 AAL39457   BF491048   BI362330   BI364012   BI637467   BT089002   CA806668   CK660425   CK661327   CO282109   CO327271   CO327691   CO339656   CO343499   DN154178   EC079661   EC209255   EC235233   EC245410   EC253207   EC260050   EC260251   EL874316   EV594099   GH780542   GH810463   GH849552   GH903872
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VYA8
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | faint & ubiquitous   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | faint & ubiquitous   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
cytosol inferred from direct assay (Bard et al., 2006) Golgi apparatus inferred from direct assay (Bard et al., 2006)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval/adult Malpighian tubules. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult midgut, larval fat body, adult testis. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    59.425 Larval Midgut    391.1 Larval Hindgut    70.3 Larval Malpighian Tubules    1203.3 Larval Fat Body    255.3 Larval Salivary Gland    79.9 Larval Trachea    51.675 Larval Carcass    60.65 Adult Head    19.7 Adult Eye    49.575 Adult Brain    30 Adult Thoracic-Abdominal Ganglion    29.1 Adult Crop    44.1 Adult Midgut    122.7 Adult Hindgut    63.6 Adult Malpighian Tubules    2011.8 Adult Fat Body    41.4 Adult Salivary Gland    46.4 Adult Heart    49.875 Adult VirginFemale Spermatheca    74.6 Adult InseminatedFemale Spermatheca    66.4 Adult Ovary    97.1 Adult Testis    176.1 Adult Male Accessory Gland    35.4 Adult Carcass    33.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    59.425 Larval Midgut    391.1 Larval Hindgut    70.3 Larval Malpighian Tubules  (1203.3) Larval Fat Body    255.3 Larval Salivary Gland    79.9 Larval Trachea    51.675 Larval Carcass    60.65 Adult Head    19.7 Adult Eye    49.575 Adult Brain    30 Adult Thoracic-Abdominal Ganglion    29.1 Adult Crop    44.1 Adult Midgut    122.7 Adult Hindgut    63.6 Adult Malpighian Tubules  (2011.8) Adult Fat Body    41.4 Adult Salivary Gland    46.4 Adult Heart    49.875 Adult VirginFemale Spermatheca    74.6 Adult InseminatedFemale Spermatheca    66.4 Adult Ovary    97.1 Adult Testis    176.1 Adult Male Accessory Gland    35.4 Adult Carcass    33.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    59.425 Larval Midgut    391.1 Larval Hindgut    70.3 Larval Malpighian Tubules  (1203.3) Larval Fat Body    255.3 Larval Salivary Gland    79.9 Larval Trachea    51.675 Larval Carcass    60.65 Adult Head    19.7 Adult Eye    49.575 Adult Brain    30 Adult Thoracic-Abdominal Ganglion    29.1 Adult Crop    44.1 Adult Midgut    122.7 Adult Hindgut    63.6 Adult Malpighian Tubules  (2011.8) Adult Fat Body    41.4 Adult Salivary Gland    46.4 Adult Heart    49.875 Adult VirginFemale Spermatheca    74.6 Adult InseminatedFemale Spermatheca    66.4 Adult Ovary    97.1 Adult Testis    176.1 Adult Male Accessory Gland    35.4 Adult Carcass    33.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    59.425 Larval Midgut    391.1 Larval Hindgut    70.3 Larval Malpighian Tubules    1203.3 Larval Fat Body    255.3 Larval Salivary Gland    79.9 Larval Trachea    51.675 Larval Carcass    60.65 Adult Head    19.7 Adult Eye    49.575 Adult Brain    30 Adult Thoracic-Abdominal Ganglion    29.1 Adult Crop    44.1 Adult Midgut    122.7 Adult Hindgut    63.6 Adult Malpighian Tubules    2011.8 Adult Fat Body    41.4 Adult Salivary Gland    46.4 Adult Heart    49.875 Adult VirginFemale Spermatheca    74.6 Adult InseminatedFemale Spermatheca    66.4 Adult Ovary    97.1 Adult Testis    176.1 Adult Male Accessory Gland    35.4 Adult Carcass    33.6 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    59.425 Larval Midgut    391.1 Larval Hindgut    70.3 Larval Malpighian Tubules    1203.3 Larval Fat Body    255.3 Larval Salivary Gland    79.9 Larval Trachea    51.675 Larval Carcass    60.65 Adult Head    19.7 Adult Eye    49.575 Adult Brain    30 Adult Thoracic-Abdominal Ganglion    29.1 Adult Crop    44.1 Adult Midgut    122.7 Adult Hindgut    63.6 Adult Malpighian Tubules    2011.8 Adult Fat Body    41.4 Adult Salivary Gland    46.4 Adult Heart    49.875 Adult VirginFemale Spermatheca    74.6 Adult InseminatedFemale Spermatheca    66.4 Adult Ovary    97.1 Adult Testis    176.1 Adult Male Accessory Gland    35.4 Adult Carcass    33.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    59.425 Larval Midgut    391.1 Larval Hindgut    70.3 Larval Malpighian Tubules  (1203.3) Larval Fat Body    255.3 Larval Salivary Gland    79.9 Larval Trachea    51.675 Larval Carcass    60.65 Adult Head    19.7 Adult Eye    49.575 Adult Brain    30 Adult Thoracic-Abdominal Ganglion    29.1 Adult Crop    44.1 Adult Midgut    122.7 Adult Hindgut    63.6 Adult Malpighian Tubules  (2011.8) Adult Fat Body    41.4 Adult Salivary Gland    46.4 Adult Heart    49.875 Adult VirginFemale Spermatheca    74.6 Adult InseminatedFemale Spermatheca    66.4 Adult Ovary    97.1 Adult Testis    176.1 Adult Male Accessory Gland    35.4 Adult Carcass    33.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    59.425 Larval Midgut    391.1 Larval Hindgut    70.3 Larval Malpighian Tubules  1203.3 Larval Fat Body    255.3 Larval Salivary Gland    79.9 Larval Trachea    51.675 Larval Carcass    60.65 Adult Head    19.7 Adult Eye    49.575 Adult Brain    30 Adult Thoracic-Abdominal Ganglion    29.1 Adult Crop    44.1 Adult Midgut    122.7 Adult Hindgut    63.6 Adult Malpighian Tubules  (2011.8) Adult Fat Body    41.4 Adult Salivary Gland    46.4 Adult Heart    49.875 Adult VirginFemale Spermatheca    74.6 Adult InseminatedFemale Spermatheca    66.4 Adult Ovary    97.1 Adult Testis    176.1 Adult Male Accessory Gland    35.4 Adult Carcass    33.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    59.425 Larval Midgut    391.1 Larval Hindgut    70.3 Larval Malpighian Tubules    1203.3 Larval Fat Body    255.3 Larval Salivary Gland    79.9 Larval Trachea    51.675 Larval Carcass    60.65 Adult Head    19.7 Adult Eye    49.575 Adult Brain    30 Adult Thoracic-Abdominal Ganglion    29.1 Adult Crop    44.1 Adult Midgut    122.7 Adult Hindgut    63.6 Adult Malpighian Tubules    2011.8 Adult Fat Body    41.4 Adult Salivary Gland    46.4 Adult Heart    49.875 Adult VirginFemale Spermatheca    74.6 Adult InseminatedFemale Spermatheca    66.4 Adult Ovary    97.1 Adult Testis    176.1 Adult Male Accessory Gland    35.4 Adult Carcass    33.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    19.7   NA  Eye    49.575   NA  Brain    30   59.425  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    29.1   NA  Crop    44.1   391.1  Midgut    122.7   70.3  Hindgut    63.6   1203.3  Malpighian Tubules    2011.8   255.3  Fat Body    41.4   79.9  Salivary Gland    no informative data   NA  Heart    49.875   51.675  Trachea    NA   NA  VirginFemale Spermatheca    74.6   NA  InseminatedFemale Spermatheca    66.4   NA  Ovary    97.1   NA  Testis    176.1   NA  Male Accessory Gland    35.4   60.65  Carcass    33.6 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    55 central nervous system, larvae L3    23 central nervous system, pupae P8    13 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    2 head, mated 20-day female    5 head, mated 1-day male    6 head, mated 4-day male    6 head, mated 20-day male    6 salivary gland, larvae L3 wandering    8 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    50 digestive system, 4-day adult    26 digestive system, 20-day adult    25 fat body, larvae L3 wandering    24 fat body, white prepupae    34 fat body, pupae P8    33 carcass, larvae L3 wandering    24 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female    33 ovary, mated 4-day female    38 testis, mated 4-day male    101 accessory gland, mated 4-day male    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (55) central nervous system, larvae L3    23 central nervous system, pupae P8    13 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    2 head, mated 20-day female    5 head, mated 1-day male    6 head, mated 4-day male    6 head, mated 20-day male    6 salivary gland, larvae L3 wandering    8 salivary gland, white prepupae    16 digestive system, larvae L3 wandering  (45) digestive system, 1-day adult  (50) digestive system, 4-day adult  26 digestive system, 20-day adult    25 fat body, larvae L3 wandering    24 fat body, white prepupae  (34) fat body, pupae P8  (33) carcass, larvae L3 wandering    24 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female  (33) ovary, mated 4-day female  (38) testis, mated 4-day male  (101) accessory gland, mated 4-day male    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    55 central nervous system, larvae L3    23 central nervous system, pupae P8    13 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    2 head, mated 20-day female    5 head, mated 1-day male    6 head, mated 4-day male    6 head, mated 20-day male    6 salivary gland, larvae L3 wandering    8 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    50 digestive system, 4-day adult    26 digestive system, 20-day adult    25 fat body, larvae L3 wandering    24 fat body, white prepupae    34 fat body, pupae P8    33 carcass, larvae L3 wandering    24 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female    33 ovary, mated 4-day female    38 testis, mated 4-day male  101 accessory gland, mated 4-day male    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    55 central nervous system, larvae L3    23 central nervous system, pupae P8    13 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    2 head, mated 20-day female    5 head, mated 1-day male    6 head, mated 4-day male    6 head, mated 20-day male    6 salivary gland, larvae L3 wandering    8 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    50 digestive system, 4-day adult    26 digestive system, 20-day adult    25 fat body, larvae L3 wandering    24 fat body, white prepupae    34 fat body, pupae P8    33 carcass, larvae L3 wandering    24 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female    33 ovary, mated 4-day female    38 testis, mated 4-day male    101 accessory gland, mated 4-day male    18 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    55 central nervous system, larvae L3    23 central nervous system, pupae P8    13 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    2 head, mated 20-day female    5 head, mated 1-day male    6 head, mated 4-day male    6 head, mated 20-day male    6 salivary gland, larvae L3 wandering    8 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    50 digestive system, 4-day adult    26 digestive system, 20-day adult    25 fat body, larvae L3 wandering    24 fat body, white prepupae    34 fat body, pupae P8    33 carcass, larvae L3 wandering    24 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female    33 ovary, mated 4-day female    38 testis, mated 4-day male    101 accessory gland, mated 4-day male    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (55) central nervous system, larvae L3    23 central nervous system, pupae P8    13 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    2 head, mated 20-day female    5 head, mated 1-day male    6 head, mated 4-day male    6 head, mated 20-day male    6 salivary gland, larvae L3 wandering    8 salivary gland, white prepupae    16 digestive system, larvae L3 wandering  (45) digestive system, 1-day adult  (50) digestive system, 4-day adult  26 digestive system, 20-day adult    25 fat body, larvae L3 wandering    24 fat body, white prepupae  (34) fat body, pupae P8  (33) carcass, larvae L3 wandering    24 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female  (33) ovary, mated 4-day female  (38) testis, mated 4-day male  (101) accessory gland, mated 4-day male    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    55 central nervous system, larvae L3    23 central nervous system, pupae P8    13 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    2 head, mated 20-day female    5 head, mated 1-day male    6 head, mated 4-day male    6 head, mated 20-day male    6 salivary gland, larvae L3 wandering    8 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    50 digestive system, 4-day adult    26 digestive system, 20-day adult    25 fat body, larvae L3 wandering    24 fat body, white prepupae    34 fat body, pupae P8    33 carcass, larvae L3 wandering    24 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female    33 ovary, mated 4-day female    38 testis, mated 4-day male  101 accessory gland, mated 4-day male    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    55 central nervous system, larvae L3    23 central nervous system, pupae P8    13 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    4 head, mated 1-day female    7 head, mated 4-day female    2 head, mated 20-day female    5 head, mated 1-day male    6 head, mated 4-day male    6 head, mated 20-day male    6 salivary gland, larvae L3 wandering    8 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    50 digestive system, 4-day adult    26 digestive system, 20-day adult    25 fat body, larvae L3 wandering    24 fat body, white prepupae    34 fat body, pupae P8    33 carcass, larvae L3 wandering    24 carcass, 1-day adult    5 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female    33 ovary, mated 4-day female    38 testis, mated 4-day male    101 accessory gland, mated 4-day male    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr    27 embryo 04-06hr    24 embryo 06-08hr    15 embryo 08-10hr    13 embryo 10-12hr    14 embryo 12-14hr    11 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    22 white prepupae new    21 white prepupae 12hr    54 white prepupae 24hr    57 pupae 2d postWPP    48 pupae 3d postWPP    20 pupae 4d postWPP    11 adult male 01day    17 adult male 05day    22 adult male 30day    19 adult female 01day    13 adult female 05day    14 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr  (27) embryo 04-06hr    24 embryo 06-08hr    15 embryo 08-10hr    13 embryo 10-12hr    14 embryo 12-14hr    11 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    22 white prepupae new    21 white prepupae 12hr  (54) white prepupae 24hr  (57) pupae 2d postWPP  (48) pupae 3d postWPP    20 pupae 4d postWPP    11 adult male 01day    17 adult male 05day    22 adult male 30day    19 adult female 01day    13 adult female 05day    14 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr    27 embryo 04-06hr    24 embryo 06-08hr    15 embryo 08-10hr    13 embryo 10-12hr    14 embryo 12-14hr    11 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    22 white prepupae new    21 white prepupae 12hr    54 white prepupae 24hr    57 pupae 2d postWPP    48 pupae 3d postWPP    20 pupae 4d postWPP    11 adult male 01day    17 adult male 05day    22 adult male 30day    19 adult female 01day    13 adult female 05day    14 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr    27 embryo 04-06hr    24 embryo 06-08hr    15 embryo 08-10hr    13 embryo 10-12hr    14 embryo 12-14hr    11 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    22 white prepupae new    21 white prepupae 12hr    54 white prepupae 24hr    57 pupae 2d postWPP    48 pupae 3d postWPP    20 pupae 4d postWPP    11 adult male 01day    17 adult male 05day    22 adult male 30day    19 adult female 01day    13 adult female 05day    14 adult female 30day    15 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr    27 embryo 04-06hr    24 embryo 06-08hr    15 embryo 08-10hr    13 embryo 10-12hr    14 embryo 12-14hr    11 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    22 white prepupae new    21 white prepupae 12hr    54 white prepupae 24hr    57 pupae 2d postWPP    48 pupae 3d postWPP    20 pupae 4d postWPP    11 adult male 01day    17 adult male 05day    22 adult male 30day    19 adult female 01day    13 adult female 05day    14 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr  27 embryo 04-06hr    24 embryo 06-08hr    15 embryo 08-10hr    13 embryo 10-12hr    14 embryo 12-14hr    11 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    22 white prepupae new    21 white prepupae 12hr  (54) white prepupae 24hr  (57) pupae 2d postWPP  (48) pupae 3d postWPP    20 pupae 4d postWPP    11 adult male 01day    17 adult male 05day    22 adult male 30day    19 adult female 01day    13 adult female 05day    14 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr    27 embryo 04-06hr    24 embryo 06-08hr    15 embryo 08-10hr    13 embryo 10-12hr    14 embryo 12-14hr    11 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    22 white prepupae new    21 white prepupae 12hr    54 white prepupae 24hr    57 pupae 2d postWPP    48 pupae 3d postWPP    20 pupae 4d postWPP    11 adult male 01day    17 adult male 05day    22 adult male 30day    19 adult female 01day    13 adult female 05day    14 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    19 embryo 02-04hr    27 embryo 04-06hr    24 embryo 06-08hr    15 embryo 08-10hr    13 embryo 10-12hr    14 embryo 12-14hr    11 embryo 14-16hr    14 embryo 16-18hr    9 embryo 18-20hr    6 embryo 20-22hr    11 embryo 22-24hr    11 larva L1    9 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    22 white prepupae new    21 white prepupae 12hr    54 white prepupae 24hr    57 pupae 2d postWPP    48 pupae 3d postWPP    20 pupae 4d postWPP    11 adult male 01day    17 adult male 05day    22 adult male 30day    19 adult female 01day    13 adult female 05day    14 adult female 30day    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    9 embryonic 1182-4H    12 embryonic GM2    9 embryonic Kc167    15 embryonic S1    13 embryonic S3    7 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    10 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    8 wing disc ML-DmD21    24 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    12 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    12 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    6 ovary fGS/OSS    16 ovary OSC    31 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    9 embryonic 1182-4H    12 embryonic GM2    9 embryonic Kc167    15 embryonic S1    13 embryonic S3    7 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    10 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    8 wing disc ML-DmD21    24 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    12 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    12 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    6 ovary fGS/OSS    16 ovary OSC  (31) ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    9 embryonic 1182-4H    12 embryonic GM2    9 embryonic Kc167    15 embryonic S1    13 embryonic S3    7 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    10 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    8 wing disc ML-DmD21    24 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    12 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    12 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    6 ovary fGS/OSS    16 ovary OSC    31 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    9 embryonic 1182-4H    12 embryonic GM2    9 embryonic Kc167    15 embryonic S1    13 embryonic S3    7 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    10 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    8 wing disc ML-DmD21    24 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    12 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    12 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    6 ovary fGS/OSS    16 ovary OSC    31 ovary OSS    13 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    9 embryonic 1182-4H    12 embryonic GM2    9 embryonic Kc167    15 embryonic S1    13 embryonic S3    7 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    10 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    8 wing disc ML-DmD21    24 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    12 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    12 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    6 ovary fGS/OSS    16 ovary OSC    31 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    9 embryonic 1182-4H    12 embryonic GM2    9 embryonic Kc167    15 embryonic S1    13 embryonic S3    7 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    10 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    8 wing disc ML-DmD21    24 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    12 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    12 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    6 ovary fGS/OSS    16 ovary OSC  31 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    9 embryonic 1182-4H    12 embryonic GM2    9 embryonic Kc167    15 embryonic S1    13 embryonic S3    7 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    10 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    8 wing disc ML-DmD21    24 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    12 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    12 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    6 ovary fGS/OSS    16 ovary OSC    31 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    22 Schneider line 2 Sg4    9 embryonic 1182-4H    12 embryonic GM2    9 embryonic Kc167    15 embryonic S1    13 embryonic S3    7 leg disc CME L1    8 wing disc CME-W2    9 wing disc ML-DmD8    10 wing disc ML-DmD9    12 wing disc ML-DmD16-c3    8 wing disc ML-DmD21    24 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    12 eye-antennal disc ML-DmD11    16 antennal disc ML-DmD20-c5    12 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    6 ovary fGS/OSS    16 ovary OSC    31 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3    36 Cadmium 50 mM 12 hrs, larvae L3    39 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    36 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    41 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    32 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3    30 Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3  (36) Cadmium 50 mM 12 hrs, larvae L3  (39) Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3  (36) Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3  (41) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (32) Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3  (30) Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3    36 Cadmium 50 mM 12 hrs, larvae L3    39 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    36 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    41 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    32 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3    30 Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3    36 Cadmium 50 mM 12 hrs, larvae L3    39 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    36 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    41 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    32 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3    30 Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3    36 Cadmium 50 mM 12 hrs, larvae L3    39 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    36 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    41 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    32 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3    30 Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3  (36) Cadmium 50 mM 12 hrs, larvae L3  (39) Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3  (36) Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3  (41) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  32 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3  30 Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3    36 Cadmium 50 mM 12 hrs, larvae L3    39 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    36 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    41 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    32 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3    30 Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    17 Cadmium 50 mM 6 hrs, larvae L3    36 Cadmium 50 mM 12 hrs, larvae L3    39 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    13 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    36 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    41 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    32 Caffeine 25 mg/ml 48 hrs, 4-day adult    13 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3    30 Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_25 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	BDGP expression data • LD02616 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030503 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG11176-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 Tango2GD7223 Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of Tango2 Class Mutagen Stocks Known lesion Tango2G517 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Tango2 Class Mutagen Stocks Known lesion Tango2GD7223 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Tango2T:SV5\V5 in vitro construct - coding region fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(1)Exel6246 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD7223} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}Tango2G517 NA
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
	There is no information supporting a molecular function term for this gene. (Based on a review of available data on: 2011-06-28)
Terms Based on Experimental Evidence ( 4 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
Golgi organization inferred from mutant phenotype (Bard et al., 2006) protein secretion inferred from mutant phenotype (Bard et al., 2006)
Cellular Component
CV term Evidence References
cytosol inferred from direct assay (Bard et al., 2006) Golgi apparatus inferred from direct assay (Bard et al., 2006)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
Tango2 - 14-3-3ε experimental knowledge based (Guruharsha et al., 2011) Tango2 - 14-3-3ζ experimental knowledge based (Guruharsha et al., 2011) Tango2 - CG2004 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Tango2 - CG3630 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Tango2 - CG8560 experimental knowledge based (Guruharsha et al., 2011) Tango2 - CG8814 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tango2 - CG8830 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Tango2 - Chd64 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Tango2 - Cyp1 experimental knowledge based (Guruharsha et al., 2011) Tango2 - Hmgs anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Tango2 - Hsc70-2 experimental knowledge based (Guruharsha et al., 2011) Tango2 - Nacα anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tango2 - Nlp experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Tango2 - Ntf-2 experimental knowledge based (Guruharsha et al., 2011) Tango2 - PSR experimental knowledge based (Guruharsha et al., 2011) Tango2 - Pglym78 experimental knowledge based (Guruharsha et al., 2011) Tango2 - Sod experimental knowledge based (Guruharsha et al., 2011) Tango2 - Trxr-1 experimental knowledge based (Guruharsha et al., 2011) Tango2 - mtSSB experimental knowledge based (Guruharsha et al., 2011) Tango2 - regucalcin anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tango2 - santa-maria experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Tango2 - smt3 experimental knowledge based (Guruharsha et al., 2011) Tango2 - tsr experimental knowledge based (Guruharsha et al., 2011)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Tango2 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 58696 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0030503 DroID - A comprehensive database of gene and protein interactions. • FBgn0030503 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32319
Orthologs
OrthoDB Orthologs (36) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6BZNNN Dipteran inclusive ortholog search EOG6KD6VS Insect inclusive ortholog search EOG69065Q Arthropod inclusive ortholog search EOG64TMQJ Metazoa inclusive ortholog search EOG62G5C2
Orthologs in Drosophila Species (EOG6BZNNN)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Tango2     Drosophila sechellia   Dsec\GM17622 Y   Drosophila erecta   Dere\GG17797 Y   Drosophila yakuba   Dyak\GE17093 Y   Drosophila ananassae   Dana\GF21807 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA10818 Y   Drosophila persimilis   Dper\GL22571 Y   Drosophila willistoni   Dwil\GK10209 Y   Drosophila virilis   Dvir\GJ19277 Y   Drosophila mojavensis   Dmoj\GI15520 Y   Drosophila grimshawi   Dgri\GH11912 Y
Orthologs in non-Drosophila Dipterans (EOG6KD6VS)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL011962   Anopheles gambiae Malaria mosquito  Agam\AGAP002962   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ016388
Orthologs in non-Dipteran Insects (EOG69065Q)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\Tango2   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG005403   Camponotus floridanus Florida carpenter ant  Cflo\CFLO17087   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL19321   Linepithema humile Argentine ant  Lhum\LH10609   Pogonomyrmex barbatus Red harvester ant  Pbar\PB24151   Solenopsis invicta Red fire ant  Sinv\SINV14052   Acyrthosiphon pisum Pea aphid  Apim\ACYPI003713   Bombyx mori Silkmoth  Bmor\BGIBMGA012902   Pediculus humanus Human body louse  Phum\PHUM200850   Tribolium castaneum Red flour beetle  Tcas\GLEAN_15175
Orthologs in non-Insect Arthropods (EOG64TMQJ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Ixodes scapularis Deer tick  Isca\ISCW019244   Ixodes scapularis Deer tick  Isca\ISCW013902
Orthologs in non-Arthropod Metazoa (EOG62G5C2)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\R186.1   Caenorhabditis elegans Nematode  Cele\Y80D3A.9   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_003139gn   Danio rerio Zebrafish  Drer\DKEY-96L17.2   Xenopus tropicalis Western clawed frog  Xtro\c22orf25   Gallus gallus Domestic chicken  Ggal\C15H22orf25   Mus musculus House mouse  Mmus\D16H22S680E   Rattus norvegicus Norway rat  Rnor\RGD1310348   Homo sapiens Human  Hsap\ENSG00000183597
Human Orthologs (1)
Gene OMIM HGNC Hsap\ENSG00000183597
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila sechellia Dsec\GM17622 Drosophila erecta Dere\GG17797 Drosophila yakuba Dyak\GE17093 Drosophila ananassae Dana\GF21807 Drosophila pseudoobscura pseudoobscura Dpse\GA10818 Drosophila persimilis Dper\GL22571 Drosophila willistoni Dwil\GK10209 Drosophila virilis Dvir\GJ19277 Drosophila mojavensis Dmoj\GI15520 Drosophila grimshawi Dgri\GH11912
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
Bloomington	32580 w* P{EP}Tango2G517
VDRC	v18175 w1118; P{GD7223}v18175/TM3
Genomic Clones ( 1 )
	BACR30C16 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 30 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD02616
Other clones	DPiM_LD02616 IP21164
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT27703 LP02586 LP18982 LP20748 RE46864 RE49033 SD19503
Other clones	9101 44330 65763 214219.3 214219.4 214531.2 CK01.113D.D12 Dmel_neb_015140_0649_1545 EK159540 EK193518 EP02449 EP06560 EP07860 EP16905 ESG014c.E21_A08 IP14341 RP003073862 RP003090432 RP003328525 RP003671471
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0030503 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32319
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Tango2 CG11176 (Bard et al., 2006)
Source for database merge of
Additional comments
Other Comments
	dsRNA directed against this gene has been used in a screen for genes required for constitutive protein secretion. (Bard et al., 2006) dsRNA directed against Tango2 inhibits protein secretion in S2 cells and results in fusion of Golgi membranes with the endoplasmic reticulum in more than 50% of the treated cells. (Bard et al., 2006)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132677 NM_001258725 NM_001272596 RefSeq (Proteins) • NP_572905 NP_001245654 NP_001259525 DDBJ / EMBL / GenBank • AA202432 AAF48295 AAL39457 AFH07368 AGB95367 AW941513 AY069312 Entrez Gene - A searchable database of RefSeq genes. • 32319 UniProtKB/TrEMBL • Q9VYA8
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Protein of unknown function DUF833 (IPR008551) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD02616
Linkouts
	BioGRID - A database of protein and genetic interactions • 58696 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0030503 DroID - A comprehensive database of gene and protein interactions. • FBgn0030503 DRSC - Results from RNAi screens. • FBgn0030503 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030503 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG11176-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0030503 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32319 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32319 modMine - Data generated by the modENCODE project. • FBgn0030503
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	CG11176 (Bard et al., 2006, Pedra et al., 2004, ) TANGO2 (Bard et al., 2006) Tango2
Name Synonym	Transport and Golgi organization 2 (Bard et al., 2006)
Secondary FlyBase IDs
References ( 15 )
Research paper	Bard et al., 2006, Nature 439(7076): 604--607 Functional genomics reveals genes involved in protein secretion and Golgi organization. [FBrf0191232] Pedra et al., 2004, Proc. Natl. Acad. Sci. U.S.A. 101(18): 7034--7039 Genome-wide transcription profile of field- and laboratory-selected dichlorodiphenyltrichloroethane (DDT)-resistant Drosophila. [FBrf0175100]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] Guruharsha et al., 2011, Cell 147(3): Table S3. [FBrf0218395] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Bellen, 2010.10.18, BDGP_2010_1022.GenExel.xml BDGP_2010_1022.GenExel.xml [FBrf0212107] Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase Curators, 2010-, Gene Ontology (GO) annotation review. Gene Ontology (GO) annotation review. [FBrf0216433] FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]