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Gene Dmel\CG10990

General Information
Symbol	Dmel\CG10990	Species	D. melanogaster
Name		Annotation symbol	CG10990
Feature type	protein_coding_gene	FlyBase ID	FBgn0030520
Gene Model Status	Current	Stock availability	14 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	12B4-12B10	Sequence location	X:13,639,610..13,649,421 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG10990 (FBgn0030520). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: binding. The biological processes in which it is involved are not known. 19 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Armadillo-type fold; Initiation factor eIF-4 gamma, MA3. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-06 and 18-24 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult eye, larval central nervous system, larval trachea. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult central nervous system, adult crop, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval/adult salivary gland, adult female reproductive system, adult male accessory gland, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1640020_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG10990. Gene sequence location is X:13639610..13649421.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10	References Knowles-Barley, 2011.8.24, BrainTrap expression curation.
FB2012_01	References Magwire et al., 2010, PLoS Genet. 6(7): e1001037 Sequence features BKN20585 BKN46369 HFA19360
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 12B4-12B10   Limits computationally determined from genome sequence between P{EP}gEP514 and P{EP}EP1354&P{EP}EP790
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG10990 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	DGC clone appears problematic: chimeric (GM16979)
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG10990-RA FBtr0073840  NM_132690   2350   509 CG10990-RB FBtr0112981  NM_001103507   3207   509
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG10990-PA   FBpp0073671   56.4   509   5.85     NP_572918   AAF48312 CG10990-PB   FBpp0111894   56.4   509   5.85     NP_001096977   ABW09411
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Initiation factor eIF-4 gamma, MA3 (IPR003891) Armadillo-type fold (IPR016024)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA201380   AA202150   AA202455   AA246240   AA246391   AA264227   AA264467   AA264756   AA391041   AA391118   AA391291   AA392971   AA392972   AA439768   AA439775   AA439892   AA440170   AA441276   AA441551   AA536525   AA696419   AA699265   AA803171   AA816486   AA817137   AA820151   AA820179   AA820213   AA820345   AA820645   AA820988   AA941345   AA941407   AA941543   AA941593   AA948778   AA949034   AA949145   AA949381   AA950331   AA950718   AA950763   AA950782   AA950994   AA952176   AA952256   AA952274   AA979164   AE014298 AAF48312   AE014298 ABW09411   AI293874   AI294892   AI295008   AI295752   AI296182   AI389335   AI402347   AI402861   AI405606   AI456283   AI456384   AI456554   AI456974   AI511928   AI511988   AI512038   AI512136   AI512165   AI512202   AI513034   AI514431   AI516165   AI516404   AI516568   AI516644   AI516905   AI518359   AI518425   AI518502   AI518541   AI519061   AI519481   AI520276   AI520354   AI531237   AI532323   AI533588   AI534477   AI534519   AI534731   AI534918   AI534938   AI543502   AI546157   AI546161   AI546191   AI546363   AY061174   AZ933354   BF499827   BF500329   BF503469   BG637312   BG638371   BI164535   BI164613   BI165284   BI166272   BI166859   BI167666   BI168205   BI169976   BI170147   BI171623   BI172568   BI173868   BI213892   BI215471   BI215606   BI216797   BI230355   BI232812   BI239452   BI243758   BI351953   BI361705   BI370803   BI372943   BI375602   BI483386   BI485453   BI485454   BI575113   BI576795   BI577232   BI577323   BI578361   BI583219   BI623060   BI630651   BI632242   BI638608   BI641212   BP540405   BP543323   BP543324   BP543703   BP543704   BP544282   BP544283   BP544340   BP544341   BP545979   BP546151   BP546737   BP547427   BP548206   BP550170   BP550171   BP554719   BP554720   BP556607   BP556608   BP557124   BP557125   BP557245   BP558655   BP558656   BQ102647   BQ103434   BT023835   CK131641   CK132237   CK132353   CK605373   CK605374   CK659620   CK662510   CO154473   CO155773   CO180219   CO186414   CO186466   CO186757   CO189383   CO262193   CO266375   CO269075   CO275406   CO275461   CO276246   CO279795   CO280887   CO283553   CO288228   CO288243   CO290093   CO290300   CO290693   CO296518   CO300902   CO304493   CO306798   CO309716   CO310768   CO313322   CO313940   CO315983   CO316040   CO322880   CO332525   CO335924   CO336942   CO336955   CO345452   CZ471689   CZ473689   CZ475245   CZ481607   CZ482155   CZ482156   CZ488753   EC057072   EC057349   EC070128   EC070295   EC071511   EC076105   EC084844   EC085119   EC088600   EC196580   EC200546   EC202656   EC203967   EC205980   EC209750   EC211280   EC213076   EC213308   EC214111   EC216620   EC218140   EC220380   EC220847   EC221787   EC225759   EC230794   EC232714   EC232791   EC242030   EC243101   EC244055   EC249789   EC256442   EC262967   EC265583   EC266052   EC266933   ES695812   EV585097   GH738869   GH739819   GH742036   GH742975   GH743117   GH744020   GH745061   GH746269   GH761501   GH762475   GH762877   GH763855   GH764836   GH765948   GH766472   GH769297   GO254345   GO254361   GO254412   GO254436
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VY91
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0030520    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0030520 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-06 and 18-24 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0030520 expression level Developmental Stage   Expression Level embryo 00-02hr    12946 embryo 02-04hr    20884 embryo 04-06hr    19292 embryo 06-08hr    8592 embryo 08-10hr    9279 embryo 10-12hr    9771 embryo 12-14hr    5963 embryo 14-16hr    6379 embryo 16-18hr    4896 embryo 18-20hr    4028 embryo 20-22hr    11052 embryo 22-24hr    9081 larva L1    2967 larva L2    1463 larva L3 12hr old    2844 larva L3 puffstage 1-2    4362 larva L3 puffstage 3-6    6235 larva L3 puffstage 7-9    5290 white prepupae new    5243 white prepupae 12hr    6672 white prepupae 24hr    9016 pupae 2d postWPP    6807 pupae 3d postWPP    5553 pupae 4d postWPP    2607 adult male 01day    2444 adult male 05day    2814 adult male 30day    2885 adult female 01day    6969 adult female 05day    7965 adult female 30day    8004 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (12946) embryo 02-04hr  (20884) embryo 04-06hr  (19292) embryo 06-08hr  (8592) embryo 08-10hr  (9279) embryo 10-12hr  (9771) embryo 12-14hr  (5963) embryo 14-16hr  (6379) embryo 16-18hr  (4896) embryo 18-20hr  (4028) embryo 20-22hr  (11052) embryo 22-24hr  (9081) larva L1  (2967) larva L2  (1463) larva L3 12hr old  (2844) larva L3 puffstage 1-2  (4362) larva L3 puffstage 3-6  (6235) larva L3 puffstage 7-9  (5290) white prepupae new  (5243) white prepupae 12hr  (6672) white prepupae 24hr  (9016) pupae 2d postWPP  (6807) pupae 3d postWPP  (5553) pupae 4d postWPP  (2607) adult male 01day  (2444) adult male 05day  (2814) adult male 30day  (2885) adult female 01day  (6969) adult female 05day  (7965) adult female 30day  (8004) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (12946) embryo 02-04hr  (20884) embryo 04-06hr  (19292) embryo 06-08hr  (8592) embryo 08-10hr  (9279) embryo 10-12hr  (9771) embryo 12-14hr  (5963) embryo 14-16hr  (6379) embryo 16-18hr  (4896) embryo 18-20hr  (4028) embryo 20-22hr  (11052) embryo 22-24hr  (9081) larva L1  (2967) larva L2  1463 larva L3 12hr old  (2844) larva L3 puffstage 1-2  (4362) larva L3 puffstage 3-6  (6235) larva L3 puffstage 7-9  (5290) white prepupae new  (5243) white prepupae 12hr  (6672) white prepupae 24hr  (9016) pupae 2d postWPP  (6807) pupae 3d postWPP  (5553) pupae 4d postWPP  (2607) adult male 01day  (2444) adult male 05day  (2814) adult male 30day  (2885) adult female 01day  (6969) adult female 05day  (7965) adult female 30day  (8004) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (12946) embryo 02-04hr  (20884) embryo 04-06hr  (19292) embryo 06-08hr    8592 embryo 08-10hr    9279 embryo 10-12hr    9771 embryo 12-14hr    5963 embryo 14-16hr    6379 embryo 16-18hr    4896 embryo 18-20hr    4028 embryo 20-22hr  (11052) embryo 22-24hr    9081 larva L1    2967 larva L2    1463 larva L3 12hr old    2844 larva L3 puffstage 1-2    4362 larva L3 puffstage 3-6    6235 larva L3 puffstage 7-9    5290 white prepupae new    5243 white prepupae 12hr    6672 white prepupae 24hr    9016 pupae 2d postWPP    6807 pupae 3d postWPP    5553 pupae 4d postWPP    2607 adult male 01day    2444 adult male 05day    2814 adult male 30day    2885 adult female 01day    6969 adult female 05day    7965 adult female 30day    8004 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    12946 embryo 02-04hr    20884 embryo 04-06hr    19292 embryo 06-08hr    8592 embryo 08-10hr    9279 embryo 10-12hr    9771 embryo 12-14hr    5963 embryo 14-16hr    6379 embryo 16-18hr    4896 embryo 18-20hr    4028 embryo 20-22hr    11052 embryo 22-24hr    9081 larva L1    2967 larva L2    1463 larva L3 12hr old    2844 larva L3 puffstage 1-2    4362 larva L3 puffstage 3-6    6235 larva L3 puffstage 7-9    5290 white prepupae new    5243 white prepupae 12hr    6672 white prepupae 24hr    9016 pupae 2d postWPP    6807 pupae 3d postWPP    5553 pupae 4d postWPP    2607 adult male 01day    2444 adult male 05day    2814 adult male 30day    2885 adult female 01day    6969 adult female 05day    7965 adult female 30day    8004 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0030520 expression level Developmental Stage   Expression Level embryo 00-02hr    12946 embryo 02-04hr    20884 embryo 04-06hr    19292 embryo 06-08hr    8592 embryo 08-10hr    9279 embryo 10-12hr    9771 embryo 12-14hr    5963 embryo 14-16hr    6379 embryo 16-18hr    4896 embryo 18-20hr    4028 embryo 20-22hr    11052 embryo 22-24hr    9081 larva L1    2967 larva L2    1463 larva L3 12hr old    2844 larva L3 puffstage 1-2    4362 larva L3 puffstage 3-6    6235 larva L3 puffstage 7-9    5290 white prepupae new    5243 white prepupae 12hr    6672 white prepupae 24hr    9016 pupae 2d postWPP    6807 pupae 3d postWPP    5553 pupae 4d postWPP    2607 adult male 01day    2444 adult male 05day    2814 adult male 30day    2885 adult female 01day    6969 adult female 05day    7965 adult female 30day    8004 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (12946) embryo 02-04hr  (20884) embryo 04-06hr  (19292) embryo 06-08hr  (8592) embryo 08-10hr  (9279) embryo 10-12hr  (9771) embryo 12-14hr  (5963) embryo 14-16hr  (6379) embryo 16-18hr  (4896) embryo 18-20hr  (4028) embryo 20-22hr  (11052) embryo 22-24hr  (9081) larva L1  (2967) larva L2  (1463) larva L3 12hr old  (2844) larva L3 puffstage 1-2  (4362) larva L3 puffstage 3-6  (6235) larva L3 puffstage 7-9  (5290) white prepupae new  (5243) white prepupae 12hr  (6672) white prepupae 24hr  (9016) pupae 2d postWPP  (6807) pupae 3d postWPP  (5553) pupae 4d postWPP  (2607) adult male 01day  (2444) adult male 05day  (2814) adult male 30day  (2885) adult female 01day  (6969) adult female 05day  (7965) adult female 30day  (8004) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (12946) embryo 02-04hr  (20884) embryo 04-06hr  (19292) embryo 06-08hr  (8592) embryo 08-10hr  (9279) embryo 10-12hr  (9771) embryo 12-14hr  (5963) embryo 14-16hr  (6379) embryo 16-18hr  (4896) embryo 18-20hr  (4028) embryo 20-22hr  (11052) embryo 22-24hr  (9081) larva L1  (2967) larva L2  1463 larva L3 12hr old  (2844) larva L3 puffstage 1-2  (4362) larva L3 puffstage 3-6  (6235) larva L3 puffstage 7-9  (5290) white prepupae new  (5243) white prepupae 12hr  (6672) white prepupae 24hr  (9016) pupae 2d postWPP  (6807) pupae 3d postWPP  (5553) pupae 4d postWPP  (2607) adult male 01day  2444 adult male 05day  (2814) adult male 30day  (2885) adult female 01day  (6969) adult female 05day  (7965) adult female 30day  (8004) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  12946 embryo 02-04hr  (20884) embryo 04-06hr  19292 embryo 06-08hr    8592 embryo 08-10hr    9279 embryo 10-12hr    9771 embryo 12-14hr    5963 embryo 14-16hr    6379 embryo 16-18hr    4896 embryo 18-20hr    4028 embryo 20-22hr  11052 embryo 22-24hr    9081 larva L1    2967 larva L2    1463 larva L3 12hr old    2844 larva L3 puffstage 1-2    4362 larva L3 puffstage 3-6    6235 larva L3 puffstage 7-9    5290 white prepupae new    5243 white prepupae 12hr    6672 white prepupae 24hr    9016 pupae 2d postWPP    6807 pupae 3d postWPP    5553 pupae 4d postWPP    2607 adult male 01day    2444 adult male 05day    2814 adult male 30day    2885 adult female 01day    6969 adult female 05day    7965 adult female 30day    8004 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    12946 embryo 02-04hr    20884 embryo 04-06hr    19292 embryo 06-08hr    8592 embryo 08-10hr    9279 embryo 10-12hr    9771 embryo 12-14hr    5963 embryo 14-16hr    6379 embryo 16-18hr    4896 embryo 18-20hr    4028 embryo 20-22hr    11052 embryo 22-24hr    9081 larva L1    2967 larva L2    1463 larva L3 12hr old    2844 larva L3 puffstage 1-2    4362 larva L3 puffstage 3-6    6235 larva L3 puffstage 7-9    5290 white prepupae new    5243 white prepupae 12hr    6672 white prepupae 24hr    9016 pupae 2d postWPP    6807 pupae 3d postWPP    5553 pupae 4d postWPP    2607 adult male 01day    2444 adult male 05day    2814 adult male 30day    2885 adult female 01day    6969 adult female 05day    7965 adult female 30day    8004 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0030520    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0030520 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: adult eye, larval central nervous system, larval trachea. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult central nervous system, adult crop, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval/adult salivary gland, adult female reproductive system, adult male accessory gland, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0030520 expression level Tissue   Expression Level Larval Central Nervous System    769.15 Larval Midgut    96.5 Larval Hindgut    364.4 Larval Malpighian Tubules    101.8 Larval Fat Body    215.2 Larval Salivary Gland    198.4 Larval Trachea    743.125 Larval Carcass    245.5 Adult Head    158.9 Adult Eye    678 Adult Brain    380.5 Adult Thoracic-Abdominal Ganglion    380.1 Adult Crop    287.3 Adult Midgut    86.7 Adult Hindgut    195.7 Adult Malpighian Tubules    150.8 Adult Fat Body    64.5 Adult Salivary Gland    329.7 Adult Heart    164.05 Adult VirginFemale Spermatheca    216.5 Adult InseminatedFemale Spermatheca    134.4 Adult Ovary    319.2 Adult Testis    74.2 Adult Male Accessory Gland    323.6 Adult Carcass    94.2 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (769.15) Larval Midgut    96.5 Larval Hindgut    364.4 Larval Malpighian Tubules    101.8 Larval Fat Body    215.2 Larval Salivary Gland    198.4 Larval Trachea  (743.125) Larval Carcass    245.5 Adult Head    158.9 Adult Eye  (678) Adult Brain    380.5 Adult Thoracic-Abdominal Ganglion    380.1 Adult Crop    287.3 Adult Midgut    86.7 Adult Hindgut    195.7 Adult Malpighian Tubules    150.8 Adult Fat Body    64.5 Adult Salivary Gland    329.7 Adult Heart    164.05 Adult VirginFemale Spermatheca    216.5 Adult InseminatedFemale Spermatheca    134.4 Adult Ovary    319.2 Adult Testis    74.2 Adult Male Accessory Gland    323.6 Adult Carcass    94.2 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    769.15 Larval Midgut    96.5 Larval Hindgut    364.4 Larval Malpighian Tubules    101.8 Larval Fat Body    215.2 Larval Salivary Gland    198.4 Larval Trachea    743.125 Larval Carcass    245.5 Adult Head    158.9 Adult Eye    678 Adult Brain    380.5 Adult Thoracic-Abdominal Ganglion    380.1 Adult Crop    287.3 Adult Midgut    86.7 Adult Hindgut    195.7 Adult Malpighian Tubules    150.8 Adult Fat Body    64.5 Adult Salivary Gland    329.7 Adult Heart    164.05 Adult VirginFemale Spermatheca    216.5 Adult InseminatedFemale Spermatheca    134.4 Adult Ovary    319.2 Adult Testis    74.2 Adult Male Accessory Gland    323.6 Adult Carcass    94.2 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    769.15 Larval Midgut    96.5 Larval Hindgut    364.4 Larval Malpighian Tubules    101.8 Larval Fat Body    215.2 Larval Salivary Gland    198.4 Larval Trachea    743.125 Larval Carcass    245.5 Adult Head    158.9 Adult Eye    678 Adult Brain    380.5 Adult Thoracic-Abdominal Ganglion    380.1 Adult Crop    287.3 Adult Midgut    86.7 Adult Hindgut    195.7 Adult Malpighian Tubules    150.8 Adult Fat Body    64.5 Adult Salivary Gland    329.7 Adult Heart    164.05 Adult VirginFemale Spermatheca    216.5 Adult InseminatedFemale Spermatheca    134.4 Adult Ovary    319.2 Adult Testis    74.2 Adult Male Accessory Gland    323.6 Adult Carcass    94.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0030520 expression level Tissue   Expression Level Larval Central Nervous System    769.15 Larval Midgut    96.5 Larval Hindgut    364.4 Larval Malpighian Tubules    101.8 Larval Fat Body    215.2 Larval Salivary Gland    198.4 Larval Trachea    743.125 Larval Carcass    245.5 Adult Head    158.9 Adult Eye    678 Adult Brain    380.5 Adult Thoracic-Abdominal Ganglion    380.1 Adult Crop    287.3 Adult Midgut    86.7 Adult Hindgut    195.7 Adult Malpighian Tubules    150.8 Adult Fat Body    64.5 Adult Salivary Gland    329.7 Adult Heart    164.05 Adult VirginFemale Spermatheca    216.5 Adult InseminatedFemale Spermatheca    134.4 Adult Ovary    319.2 Adult Testis    74.2 Adult Male Accessory Gland    323.6 Adult Carcass    94.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  769.15 Larval Midgut    96.5 Larval Hindgut    364.4 Larval Malpighian Tubules    101.8 Larval Fat Body    215.2 Larval Salivary Gland    198.4 Larval Trachea  743.125 Larval Carcass    245.5 Adult Head    158.9 Adult Eye  678 Adult Brain    380.5 Adult Thoracic-Abdominal Ganglion    380.1 Adult Crop    287.3 Adult Midgut    86.7 Adult Hindgut    195.7 Adult Malpighian Tubules    150.8 Adult Fat Body    64.5 Adult Salivary Gland    329.7 Adult Heart    164.05 Adult VirginFemale Spermatheca    216.5 Adult InseminatedFemale Spermatheca    134.4 Adult Ovary    319.2 Adult Testis    74.2 Adult Male Accessory Gland    323.6 Adult Carcass    94.2 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    769.15 Larval Midgut    96.5 Larval Hindgut    364.4 Larval Malpighian Tubules    101.8 Larval Fat Body    215.2 Larval Salivary Gland    198.4 Larval Trachea    743.125 Larval Carcass    245.5 Adult Head    158.9 Adult Eye    678 Adult Brain    380.5 Adult Thoracic-Abdominal Ganglion    380.1 Adult Crop    287.3 Adult Midgut    86.7 Adult Hindgut    195.7 Adult Malpighian Tubules    150.8 Adult Fat Body    64.5 Adult Salivary Gland    329.7 Adult Heart    164.05 Adult VirginFemale Spermatheca    216.5 Adult InseminatedFemale Spermatheca    134.4 Adult Ovary    319.2 Adult Testis    74.2 Adult Male Accessory Gland    323.6 Adult Carcass    94.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    769.15 Larval Midgut    96.5 Larval Hindgut    364.4 Larval Malpighian Tubules    101.8 Larval Fat Body    215.2 Larval Salivary Gland    198.4 Larval Trachea    743.125 Larval Carcass    245.5 Adult Head    158.9 Adult Eye    678 Adult Brain    380.5 Adult Thoracic-Abdominal Ganglion    380.1 Adult Crop    287.3 Adult Midgut    86.7 Adult Hindgut    195.7 Adult Malpighian Tubules    150.8 Adult Fat Body    64.5 Adult Salivary Gland    329.7 Adult Heart    164.05 Adult VirginFemale Spermatheca    216.5 Adult InseminatedFemale Spermatheca    134.4 Adult Ovary    319.2 Adult Testis    74.2 Adult Male Accessory Gland    323.6 Adult Carcass    94.2 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    158.9   NA  Eye    678   NA  Brain    380.5   769.15  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    380.1   NA  Crop    287.3   96.5  Midgut    86.7   364.4  Hindgut    195.7   101.8  Malpighian Tubules    150.8   215.2  Fat Body    64.5   198.4  Salivary Gland    329.7   NA  Heart    164.05   743.125  Trachea    NA   NA  VirginFemale Spermatheca    216.5   NA  InseminatedFemale Spermatheca    134.4   NA  Ovary    319.2   NA  Testis    74.2   NA  Male Accessory Gland    323.6   245.5  Carcass    94.2 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_05
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030520 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG10990-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG10990GD7160 Phenotype manifest in Allele
Classical Alleles ( 17 )
For All Classical Alleles Show
Allele of CG10990 Class Mutagen Stocks Known lesion CG10990BG00494 P-element activity 1 -- CG10990CB-5619-3 1 -- CG10990CB-6515-3 1 -- CG10990CB-6903-3 1 -- CG10990d00598 P-element activity 1 -- CG10990d04016 P-element activity 1 -- CG10990e03856 piggyBac transposase 1 -- CG10990e04394 piggyBac transposase 1 -- CG10990f06108 piggyBac transposase 1 -- CG10990NP0636 1 -- CG10990UM-8205-3 1 -- CG10990CB02351 0 -- CG10990CPTI004527 piggyBac transposase 0 Yes CG10990d06520 0 -- CG10990d06611 P-element activity 0 -- CG10990G93 P-element activity 0 Yes CG10990GG01675 0 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG10990 Class Mutagen Stocks Known lesion CG10990GD7160 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG10990GLV21077 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(1)Exel6247 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD7160} NA P{TRiP.GLV21077} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{Mae-UAS.6.11}CG10990GG01675 NA P{XP}CG10990d00598 NA P{XP}CG10990d04016 NA P{XP}CG10990d06520 NA P{XP}CG10990d06611 NA miscellaneous insertions P{GT1}CG10990BG00494 NA P{PTT-GB}CG10990CB02351 NA P{PTT-GB}CG10990G93 NA P{RS3}CG10990CB-5619-3 NA P{RS3}CG10990CB-6515-3 NA P{RS3}CG10990CB-6903-3 NA P{RS3}CG10990UM-8205-3 NA PBac{810.P.FSVS-2}CG10990CPTI004527 NA PBac{RB}CG10990e03856 NA PBac{RB}CG10990e04394 NA PBac{WH}CG10990f06108 NA insertion of enhancer trap binary system P{GawB}CG10990NP0636 No
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
binding inferred from electronic annotation with InterPro:IPR016024 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG10990 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 58710 DroID - A comprehensive database of gene and protein interactions. • FBgn0030520 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32337
Orthologs
Genome-wide drosophilid orthologs	Dana\GF22345 Dere\GG19488 Dgri\GH11920 Dmoj\GI14659 Dper\GL19848 Dpse\GA27356 Dsec\GM17592 Dsim\GD24516 Dvir\GJ19313 Dwil\GK16207 Dyak\GE16141
Curated drosophilid orthologs	Dmir\CG10990 (Thornton, 2005.12.20)
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL005832-PA Aedes aegypti (mosquito) AGAP000378-PA Anopheles gambiae (mosquito) XP_001946425.1 Acyrthosiphon pisum (pea aphid) 59444 Branchiostoma floridae (lancelet) ENSBTAP00000025886 Bos taurus (bovine) ENSCAFP00000015916 Canis familiaris (dog) ENSCINP00000024343 Ciona intestinalis (sea squirt) CPIJ015786 Culex pipens (mosquito) ENSCPOP00000007160 Cavia porcellus (guinea pig) ENSCSAVP00000008424 Ciona savignyi (sedentary tunicate) 170810 Capitella spl (polychaete worm) 306119 Daphnia pulex (daphnia) ENSDARP00000002420 Danio rerio (zebra fish) ENSECAP00000018369 Equus caballus (horse) ENSGACP00000023265 Gymnopilus aculeatus (mushroom) ENSGALP00000014143 Gallus gallus (chicken) 91647 Hypsipyla robusta (cedar shoot borer) ENSP00000280154 Homo sapiens (human) ISCW018158-PA Ixodes scapularis (deer tick) 114600 Lottia gigantea (owl limpet) 8187 Monocosta brevicollis (choanoflagellate) ENSMODP00000013027 Monodelphis domestica (gray opossum) ENSMMUP00000022630 Macaca mulatta (rhesus monkey) ENSMUSP00000073975 Mus musculus (house mouse) 233387 Nematostella vectensis (starlet anemone) ENSOANP00000002546 Ornithorynchus anatinus (platypus) ENSORLP00000008059 Oryzias latipes (japanese killifish) 32879 Ostreococcus tauri (green alga) PHUM007272-PA Pediculus humanus (human body louse) 128768 Physcomitrella patens (moss) ENSPPYP00000003086 Pongo pygmaeus (orangutan) 138394 Phytophthora sojae (root rot pathogen) ENSPTRP00000005185 Pan troglodytes (chimpanzee) ENSRNOP00000020155 Rattus norvegicus (norway rat) 5058337 Sorghum bicolor (sorghum) Smp_072110.1 Schistosoma mansoni (trematode parasite) XP_001175867.1 Strongylocentrotus purpuratus (purple sea urchin) 64126 Trichoplax adhaerens (metazoa) XP_973518.1 Tribolium castaneum (red flour beetle) ENSTNIP00000021210 Tetraodon nigroviridis (green spotted pufferfish) 264946 Thalassiosira pseudonana (marine diatom) ENSTRUP00000004796 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000054013 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • ISCW018838 ISCW018158 FBgn0233686 FBgn0218209 FBgn0206457 FBgn0195851 FBgn0172500 FBgn0172501 JGI_V11_306119 FBgn0248723 FBgn0157446 FBgn0137410 FBgn0119399 FBgn0111691 FBgn0099342 CPIJ015786 BGIBMGA014051 BGIBMGA012211 ACYPI003626 AGAP000378 AAEL005832 PHUM173160 GLEAN_04932
Stocks & Reagents
Stocks Listed in FlyBase ( 14 )
Bloomington	12491 w1118 P{GT1}CG10990BG00494
Harvard	- P{XP}CG10990d00598 - P{XP}CG10990d04016 - PBac{RB}CG10990e03856 - PBac{RB}CG10990e04394 - PBac{WH}CG10990f06108
Kyoto	123717 w1118 P{RS3}CG10990CB-5619-3 124134 w1118 P{RS3}CG10990CB-6515-3 124413 w1118 P{RS3}CG10990UM-8205-3 124260 w1118 P{RS3}CG10990CB-6903-3 / FM7h
VDRC	v16160 w1118; P{GD7160}v16160 v16162 w1118; P{GD7160}v16162/TM3
	More stocks available...
Genomic Clones ( 1 )
	BACR11H20 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 258 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD14406 LD21074
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT14587 AT15177 AT19462 GH20475 GH21540 GH22184 GH25674 GH27502 GM07647 GM10340 GM16979 HL08058 LD02275 LD04350 LD05526 LD06031 LD07884 LD08490 LD08924 LD09911 LD10077 LD10201 LD12140 LD14422 LD14432 LD14574 LD16528 LD17170 LD22301 LD23657 LD23710 LD23915 LD24472 LD24955 LD25442 LD25536 LD25731 LD25805 LD27407 LD27776 LD27931 LD28254 LD28854 LD29261 LD29366 LD29388 LD30819 LD30875 LD30907 LD31196 LD33449 LD36175 LD36389 LD37160 LD37848 LD37928 LD38040 LD38083 LD38304 LD39089 LD40384 LD40488 LD40937 LD41935 LD42471 LD42579 LD43579 LD43664 LD43872 LD43913 LD43963 LD45250 LD46254 LD46259 LD47214 LD47923 LP07123 LP08375 LP08517 LP09472 LP10016 LP12547 LP13608 LP13814 LP17508 LP22786 RE04234 RE04321 RE05143 RE07087 RE08093 RE10152 RE11305 RE13438 RE15094 RE16992 RE19530 RE22165 RE28935 RE35938 RE46037 RE60143 RE63454 RE66275 RE68776 RE68777 RE70884 RE70985 RE72227 RH21760 RH27980 RH33433 RH55128 RH59933 SD01204 SD01228 SD02186 SD03790 SD05474 SD07325 SD07406 SD07735 SD10284 SD15240 SD20942 SD24429 SD25946
Other clones	11180 14763 14801 28011 29801 33564 42013 46781 53831 62135 80800 84295 99819 106686 108368 121900 160384 160541 214439.10 276835 523731 525562 561999 562013 CK01.18B.G11 CK01.21A.A8 CK01.54B.H7 CK01.86A.C6 CK01.86A.F3 CK01.93C.B12 CK01.94C.A4 CK01.100A.A2 CK01.122D.D5 CK01.146A.D11 CK01.147A.B2 Dmel_dig_000784_0632_3687 EC01241 EK019436 EK020028 EK022804 EK044132 EK068022 EK068043 EK073038 EK073634 EK074806 EK084625 EK093515 EK117519 EK117640 EK120137 EK136037 EK146204 EK155344 EK163640 EK179627 EK189124 EK213854 EK218949 EK222452 EK232127 EK234336 EK244847 EK252422 EK263258 EK263429 EK303747 EN04210 EN06722 EN11507 EN13526 EN13540 EP22060 FGA004B01 FGC019H03 FGC021H10 FGC025A08 FGC025D02 FGH101E10 FGH103D04 FGH109E12 FGH116H01 FGH125B05 FGM105F08 FGM231D04 FGM304E04 FGM307D12 FGM308B11 FGM316C11 LD01913 LD02182 LD12139 LD14777 LD16154 LD23620 LD36611 LD42262 LD43507 RC0-DP0007-150700-011-D09 RE06344 RE08791 RE11514 RE21878 RE24069 RE41490 RE57552 RP01103 RP01138 RP01295 RP01390 RP01492 RP01525 RP001007994 RP001012142 RP001012753 RP001013952 RP001024076 RP001041358 RP001046725 RP001046926 RP001049543 RP001049882 RP001050110 RP001054557 RP001055319 RP001056674 UT01880 UUGC0022 UUGC0839
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0030520 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32337
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	Expression is enriched in embryonic gonads. (Shigenobu et al., 2006)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132690 NM_001103507 RefSeq (Proteins) • NP_572918 NP_001096977 DDBJ / EMBL / GenBank • AAF48312 ABW09411 AZ933354 CZ471689 CZ473689 CZ475245 CZ481607 CZ482155 CZ482156 CZ488753 Entrez Gene - A searchable database of RefSeq genes. • 32337 UniProtKB/TrEMBL • Q9VY91
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Initiation factor eIF-4 gamma, MA3 (IPR003891) Armadillo-type fold (IPR016024)
Linkouts
	BioGRID - A database of protein and genetic interactions • 58710 DroID - A comprehensive database of gene and protein interactions. • FBgn0030520 DRSC - Results from RNAi screens. • FBgn0030520 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030520 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG10990-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0030520 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32337 InParanoid A subset of ortholog calls from InParanoid. • AAEL005832-PA Aedes aegypti (mosquito) AGAP000378-PA Anopheles gambiae (mosquito) XP_001946425.1 Acyrthosiphon pisum (pea aphid) 59444 Branchiostoma floridae (lancelet) ENSBTAP00000025886 Bos taurus (bovine) ENSCAFP00000015916 Canis familiaris (dog) ENSCINP00000024343 Ciona intestinalis (sea squirt) CPIJ015786 Culex pipens (mosquito) ENSCPOP00000007160 Cavia porcellus (guinea pig) ENSCSAVP00000008424 Ciona savignyi (sedentary tunicate) 170810 Capitella spl (polychaete worm) 306119 Daphnia pulex (daphnia) ENSDARP00000002420 Danio rerio (zebra fish) ENSECAP00000018369 Equus caballus (horse) ENSGACP00000023265 Gymnopilus aculeatus (mushroom) ENSGALP00000014143 Gallus gallus (chicken) 91647 Hypsipyla robusta (cedar shoot borer) ENSP00000280154 Homo sapiens (human) ISCW018158-PA Ixodes scapularis (deer tick) 114600 Lottia gigantea (owl limpet) 8187 Monocosta brevicollis (choanoflagellate) ENSMODP00000013027 Monodelphis domestica (gray opossum) ENSMMUP00000022630 Macaca mulatta (rhesus monkey) ENSMUSP00000073975 Mus musculus (house mouse) 233387 Nematostella vectensis (starlet anemone) ENSOANP00000002546 Ornithorynchus anatinus (platypus) ENSORLP00000008059 Oryzias latipes (japanese killifish) 32879 Ostreococcus tauri (green alga) PHUM007272-PA Pediculus humanus (human body louse) 128768 Physcomitrella patens (moss) ENSPPYP00000003086 Pongo pygmaeus (orangutan) 138394 Phytophthora sojae (root rot pathogen) ENSPTRP00000005185 Pan troglodytes (chimpanzee) ENSRNOP00000020155 Rattus norvegicus (norway rat) 5058337 Sorghum bicolor (sorghum) Smp_072110.1 Schistosoma mansoni (trematode parasite) XP_001175867.1 Strongylocentrotus purpuratus (purple sea urchin) 64126 Trichoplax adhaerens (metazoa) XP_973518.1 Tribolium castaneum (red flour beetle) ENSTNIP00000021210 Tetraodon nigroviridis (green spotted pufferfish) 264946 Thalassiosira pseudonana (marine diatom) ENSTRUP00000004796 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000054013 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32337 modMine - Data generated by the modENCODE project. • FBgn0030520 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • ISCW018838 ISCW018158 FBgn0233686 FBgn0218209 FBgn0206457 FBgn0195851 FBgn0172500 FBgn0172501 JGI_V11_306119 FBgn0248723 FBgn0157446 FBgn0137410 FBgn0119399 FBgn0111691 FBgn0099342 CPIJ015786 BGIBMGA014051 BGIBMGA012211 ACYPI003626 AGAP000378 AAEL005832 PHUM173160 GLEAN_04932
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG10990 (Mohit et al., 2006, Shigenobu et al., 2006, Buszczak et al., 2007, Quinones-Coello, 2007, Jordan et al., 2007, Ni et al., 2011.7.19, Magwire et al., 2010)
Name Synonym
Secondary FlyBase IDs
References ( 25 )
Generate a list of	All references relating to this gene ( 25 )
List References by type	Research paper  ( 8 ) Supplementary material  ( 4 ) Personal communication to FlyBase  ( 6 ) FlyBase analysis  ( 2 ) Computer file  ( 3 ) DNA/RNA sequence record  ( 1 )
Recent research papers ( 2 )
	Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812] Magwire et al., 2010, PLoS Genet. 6(7): e1001037 Quantitative and molecular genetic analyses of mutations increasing Drosophila life span. [FBrf0211465] Show all research papers ...