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Gene Dmel\CG14408

General Information
Symbol	Dmel\CG14408	Species	D. melanogaster
Name		Annotation symbol	CG14408
Feature type	protein_coding_gene	FlyBase ID	FBgn0030581
Gene Model Status	Current	Stock availability	None publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	12F5-12F5	Sequence location	X:14,721,091..14,726,090 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG14408 (FBgn0030581). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: SH3 domain binding. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: SH3-binding 5. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult central nervous system, adult ovary, adult male accessory gland. Gene sequence location is X:14721091..14726090.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01	Sequence features HFA19595 BKN31858
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 12F5-12F5   Limits computationally determined from genome sequence between P{EP}EP334&P{EP}EP977 and P{EP}hiwEP1305
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG14408 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Atypical cDNA: retained intron (GH19670). DGC clone appears problematic (GH19670): unspliced intron
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG14408-RA FBtr0073990  NM_132743   2985   659 CG14408-RC FBtr0100150  NM_001038755   3127   175 CG14408-RD FBtr0114621  NM_001144725   2476   636 CG14408-RE FBtr0305580     3060   684
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG14408-PA   FBpp0073807   71.0   659   5.61     NP_572971   AAF48389 CG14408-PC   FBpp0099500   19.3   175   8.46     NP_001033844   ABC67183 CG14408-PD   FBpp0113113   67.8   636   6.47     NP_001138197   ACL82929 CG14408-PE   FBpp0294031   74.0   684   5.99
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • SH3-binding 5 (IPR007940)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA439378   AA801520   AA821048   AE014298 AAF48389   AE014298 ABC67183   AE014298 ACL82929   AI113470   AI388694   AI534893   AI534980   AJ570716   AJ570717   AJ570718   AJ570719   AJ570720   AJ570721   AJ570723   AJ570724   AJ570725   AJ570726   AJ570727   AJ570728   AJ570729   AJ570730   AJ570731   AJ570732   AJ570734   AJ570735   AJ570736   AJ570737   AJ570738   AJ570739   AJ570740   AW940749   AW944175   AY050226 AAK84925   AY060745 AAL28293   BG633662   BG639479   BI614663   BI616493   BI620341   BI620826   BI631937   BI636214   BP543569   BP543570   CO186741   CO275681   CO277661   CO291561   CO304853   CO321028   CO328173   CO328641   CO331623   CO336069   EC063499   EC083624   EC088792   EC226144   EC228083   EC233174   EC240784   EC265043
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8IR46 Q961T1 Q9VY16 B7Z0Y5 Q2PE01
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0030581    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0030581 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0030581 expression level Developmental Stage   Expression Level embryo 00-02hr    1480 embryo 02-04hr    305 embryo 04-06hr    62 embryo 06-08hr    47 embryo 08-10hr    65 embryo 10-12hr    188 embryo 12-14hr    255 embryo 14-16hr    557 embryo 16-18hr    763 embryo 18-20hr    962 embryo 20-22hr    878 embryo 22-24hr    843 larva L1    732 larva L2    414 larva L3 12hr old    330 larva L3 puffstage 1-2    175 larva L3 puffstage 3-6    294 larva L3 puffstage 7-9    248 white prepupae new    248 white prepupae 12hr    379 white prepupae 24hr    448 pupae 2d postWPP    666 pupae 3d postWPP    803 pupae 4d postWPP    679 adult male 01day    818 adult male 05day    880 adult male 30day    772 adult female 01day    842 adult female 05day    1008 adult female 30day    1032 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1480) embryo 02-04hr  (305) embryo 04-06hr    62 embryo 06-08hr    47 embryo 08-10hr    65 embryo 10-12hr  (188) embryo 12-14hr  (255) embryo 14-16hr  (557) embryo 16-18hr  (763) embryo 18-20hr  (962) embryo 20-22hr  (878) embryo 22-24hr  (843) larva L1  (732) larva L2  (414) larva L3 12hr old  (330) larva L3 puffstage 1-2  (175) larva L3 puffstage 3-6  (294) larva L3 puffstage 7-9  (248) white prepupae new  (248) white prepupae 12hr  (379) white prepupae 24hr  (448) pupae 2d postWPP  (666) pupae 3d postWPP  (803) pupae 4d postWPP  (679) adult male 01day  (818) adult male 05day  (880) adult male 30day  (772) adult female 01day  (842) adult female 05day  (1008) adult female 30day  (1032) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  1480 embryo 02-04hr    305 embryo 04-06hr    62 embryo 06-08hr    47 embryo 08-10hr    65 embryo 10-12hr    188 embryo 12-14hr    255 embryo 14-16hr    557 embryo 16-18hr    763 embryo 18-20hr    962 embryo 20-22hr    878 embryo 22-24hr    843 larva L1    732 larva L2    414 larva L3 12hr old    330 larva L3 puffstage 1-2    175 larva L3 puffstage 3-6    294 larva L3 puffstage 7-9    248 white prepupae new    248 white prepupae 12hr    379 white prepupae 24hr    448 pupae 2d postWPP    666 pupae 3d postWPP    803 pupae 4d postWPP    679 adult male 01day    818 adult male 05day    880 adult male 30day    772 adult female 01day    842 adult female 05day    1008 adult female 30day    1032 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1480 embryo 02-04hr    305 embryo 04-06hr    62 embryo 06-08hr    47 embryo 08-10hr    65 embryo 10-12hr    188 embryo 12-14hr    255 embryo 14-16hr    557 embryo 16-18hr    763 embryo 18-20hr    962 embryo 20-22hr    878 embryo 22-24hr    843 larva L1    732 larva L2    414 larva L3 12hr old    330 larva L3 puffstage 1-2    175 larva L3 puffstage 3-6    294 larva L3 puffstage 7-9    248 white prepupae new    248 white prepupae 12hr    379 white prepupae 24hr    448 pupae 2d postWPP    666 pupae 3d postWPP    803 pupae 4d postWPP    679 adult male 01day    818 adult male 05day    880 adult male 30day    772 adult female 01day    842 adult female 05day    1008 adult female 30day    1032 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1480 embryo 02-04hr    305 embryo 04-06hr    62 embryo 06-08hr    47 embryo 08-10hr    65 embryo 10-12hr    188 embryo 12-14hr    255 embryo 14-16hr    557 embryo 16-18hr    763 embryo 18-20hr    962 embryo 20-22hr    878 embryo 22-24hr    843 larva L1    732 larva L2    414 larva L3 12hr old    330 larva L3 puffstage 1-2    175 larva L3 puffstage 3-6    294 larva L3 puffstage 7-9    248 white prepupae new    248 white prepupae 12hr    379 white prepupae 24hr    448 pupae 2d postWPP    666 pupae 3d postWPP    803 pupae 4d postWPP    679 adult male 01day    818 adult male 05day    880 adult male 30day    772 adult female 01day    842 adult female 05day    1008 adult female 30day    1032 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0030581 expression level Developmental Stage   Expression Level embryo 00-02hr    1480 embryo 02-04hr    305 embryo 04-06hr    62 embryo 06-08hr    47 embryo 08-10hr    65 embryo 10-12hr    188 embryo 12-14hr    255 embryo 14-16hr    557 embryo 16-18hr    763 embryo 18-20hr    962 embryo 20-22hr    878 embryo 22-24hr    843 larva L1    732 larva L2    414 larva L3 12hr old    330 larva L3 puffstage 1-2    175 larva L3 puffstage 3-6    294 larva L3 puffstage 7-9    248 white prepupae new    248 white prepupae 12hr    379 white prepupae 24hr    448 pupae 2d postWPP    666 pupae 3d postWPP    803 pupae 4d postWPP    679 adult male 01day    818 adult male 05day    880 adult male 30day    772 adult female 01day    842 adult female 05day    1008 adult female 30day    1032 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1480) embryo 02-04hr  (305) embryo 04-06hr    62 embryo 06-08hr    47 embryo 08-10hr    65 embryo 10-12hr  (188) embryo 12-14hr  (255) embryo 14-16hr  (557) embryo 16-18hr  (763) embryo 18-20hr  (962) embryo 20-22hr  (878) embryo 22-24hr  (843) larva L1  (732) larva L2  (414) larva L3 12hr old  (330) larva L3 puffstage 1-2  (175) larva L3 puffstage 3-6  (294) larva L3 puffstage 7-9  (248) white prepupae new  (248) white prepupae 12hr  (379) white prepupae 24hr  (448) pupae 2d postWPP  (666) pupae 3d postWPP  (803) pupae 4d postWPP  (679) adult male 01day  (818) adult male 05day  (880) adult male 30day  (772) adult female 01day  (842) adult female 05day  (1008) adult female 30day  (1032) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  1480 embryo 02-04hr    305 embryo 04-06hr    62 embryo 06-08hr    47 embryo 08-10hr    65 embryo 10-12hr    188 embryo 12-14hr    255 embryo 14-16hr    557 embryo 16-18hr    763 embryo 18-20hr    962 embryo 20-22hr    878 embryo 22-24hr    843 larva L1    732 larva L2    414 larva L3 12hr old    330 larva L3 puffstage 1-2    175 larva L3 puffstage 3-6    294 larva L3 puffstage 7-9    248 white prepupae new    248 white prepupae 12hr    379 white prepupae 24hr    448 pupae 2d postWPP    666 pupae 3d postWPP    803 pupae 4d postWPP    679 adult male 01day    818 adult male 05day    880 adult male 30day    772 adult female 01day    842 adult female 05day    1008 adult female 30day    1032 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1480 embryo 02-04hr    305 embryo 04-06hr    62 embryo 06-08hr    47 embryo 08-10hr    65 embryo 10-12hr    188 embryo 12-14hr    255 embryo 14-16hr    557 embryo 16-18hr    763 embryo 18-20hr    962 embryo 20-22hr    878 embryo 22-24hr    843 larva L1    732 larva L2    414 larva L3 12hr old    330 larva L3 puffstage 1-2    175 larva L3 puffstage 3-6    294 larva L3 puffstage 7-9    248 white prepupae new    248 white prepupae 12hr    379 white prepupae 24hr    448 pupae 2d postWPP    666 pupae 3d postWPP    803 pupae 4d postWPP    679 adult male 01day    818 adult male 05day    880 adult male 30day    772 adult female 01day    842 adult female 05day    1008 adult female 30day    1032 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1480 embryo 02-04hr    305 embryo 04-06hr    62 embryo 06-08hr    47 embryo 08-10hr    65 embryo 10-12hr    188 embryo 12-14hr    255 embryo 14-16hr    557 embryo 16-18hr    763 embryo 18-20hr    962 embryo 20-22hr    878 embryo 22-24hr    843 larva L1    732 larva L2    414 larva L3 12hr old    330 larva L3 puffstage 1-2    175 larva L3 puffstage 3-6    294 larva L3 puffstage 7-9    248 white prepupae new    248 white prepupae 12hr    379 white prepupae 24hr    448 pupae 2d postWPP    666 pupae 3d postWPP    803 pupae 4d postWPP    679 adult male 01day    818 adult male 05day    880 adult male 30day    772 adult female 01day    842 adult female 05day    1008 adult female 30day    1032 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0030581    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0030581 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult central nervous system, adult ovary, adult male accessory gland. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Heatmap Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea no informative data Larval Carcass no informative data Adult Head no informative data Adult Eye no informative data Adult Brain no informative data Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules     Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary no informative data Adult Testis     Adult Male Accessory Gland no informative data Adult Carcass no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_10
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030581 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG14408-RA;CG14408-RA;CG14408-RB FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG14408 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG14408 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG14408 Class Mutagen Stocks Known lesion CG14408GD8316 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(1)Exel6248 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8316} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}EP334 NA P{EP}EP977 NA P{EP}EP1608 NA P{EP}rutEP399 NA P{EP}rutEP1381 NA P{EP}rutEP1579 NA P{EP}rutEP1603 NA miscellaneous insertions P{GT1}BG02745BG02745 NA
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
SH3 domain binding inferred from sequence or structural similarity with EMBL:AB016835 (FlyBase, 1992-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG14408 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 58766 DroID - A comprehensive database of gene and protein interactions. • FBgn0030581 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32407
Orthologs
Genome-wide drosophilid orthologs	Dana\GF21572 Dere\GG19447 Dgri\GH12516 Dmoj\GI14868 Dper\GL20152 Dpse\GA26629 Dsec\GM12037 Dsim\GD15837 Dvir\GJ19532 Dwil\GK25419 Dyak\GE16100
Curated drosophilid orthologs	Dpse\GA12960   Dsim\GD15836
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL009014-PA Aedes aegypti (mosquito) AGAP000726-PA Anopheles gambiae (mosquito) XP_394025.3 Apis mellifera (honey bee) XP_001897058.1 Brugia malayi (roundworm nematode) CN06280 Caenorhabditis brenneri (small nematode) CBP27908 Caenorhabditis briggsae (nematode) CPIJ018865 Culex pipens (mosquito) 190408 Hypsipyla robusta (cedar shoot borer) ISCW006990-PA Ixodes scapularis (deer tick) ENSMMUP00000008759 Macaca mulatta (rhesus monkey) PHUM006628-PA Pediculus humanus (human body louse) ENSRNOP00000057813 Rattus norvegicus (norway rat) XP_974154.1 Tribolium castaneum (red flour beetle) ENSXETP00000043899 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV12214 LH16920 ISCW006990 FBgn0233648 FBgn0233647 FBgn0227378 FBgn0206675 FBgn0206673 FBgn0187494 FBgn0068698 FBgn0166978 FBgn0166977 FBgn0248002 FBgn0157748 FBgn0157747 FBgn0137619 FBgn0119995 FBgn0111650 FBgn0111649 FBgn0098572 FBgn0098571 CPIJ018865 BGIBMGA014156 GB17970 GB13029 AGAP000726 AAEL015075 AAEL012814 AAEL009014 PB20172 PHUM089290 GLEAN_10166
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 1 )
	BACR30H22 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 32 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH19670 SD01287
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH09782 HL06515 LD13933 RH44107 RH46455 RH51463 RH52063 RH61624 SD17828
Other clones	14962 17751 70175 123646 145637 273336 556957 CK01.25C.F8 EK022656 EK118253 EK125731 EK197637 EK246544 EK290159 EK291047 EK300729 EN11747 EP08705 FGC021B10 GM05493 SD01159
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0030581 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32407
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132743 NM_001038755 NM_001144725 RefSeq (Proteins) • NP_572971 NP_001033844 NP_001138197 DDBJ / EMBL / GenBank • AAF48389 AAF48389.3 AAK84925 AAL28293 AAN09341 AAN09341.1 ABC67183 ACL82929 AI388694 AI534980 AJ570716 AJ570717 AJ570718 AJ570719 AJ570720 AJ570721 AJ570723 AJ570724 AJ570725 AJ570726 AJ570727 AJ570728 AJ570729 AJ570730 AJ570731 AJ570732 AJ570734 AJ570735 AJ570736 AJ570737 AJ570738 AJ570739 AJ570740 AW940749 AW944175 AY050226 AY060745 Entrez Gene - A searchable database of RefSeq genes. • 32407 UniProtKB/TrEMBL • B7Z0Y5 Q2PE01 Q8IR46 Q9VY16 Q961T1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • SH3-binding 5 (IPR007940)
Linkouts
	BioGRID - A database of protein and genetic interactions • 58766 DroID - A comprehensive database of gene and protein interactions. • FBgn0030581 DRSC - Results from RNAi screens. • FBgn0030581 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030581 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG14408-RA;CG14408-RA;CG14408-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0030581 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32407 InParanoid A subset of ortholog calls from InParanoid. • AAEL009014-PA Aedes aegypti (mosquito) AGAP000726-PA Anopheles gambiae (mosquito) XP_394025.3 Apis mellifera (honey bee) XP_001897058.1 Brugia malayi (roundworm nematode) CN06280 Caenorhabditis brenneri (small nematode) CBP27908 Caenorhabditis briggsae (nematode) CPIJ018865 Culex pipens (mosquito) 190408 Hypsipyla robusta (cedar shoot borer) ISCW006990-PA Ixodes scapularis (deer tick) ENSMMUP00000008759 Macaca mulatta (rhesus monkey) PHUM006628-PA Pediculus humanus (human body louse) ENSRNOP00000057813 Rattus norvegicus (norway rat) XP_974154.1 Tribolium castaneum (red flour beetle) ENSXETP00000043899 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32407 modMine - Data generated by the modENCODE project. • FBgn0030581 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV12214 LH16920 ISCW006990 FBgn0233648 FBgn0233647 FBgn0227378 FBgn0206675 FBgn0206673 FBgn0187494 FBgn0068698 FBgn0166978 FBgn0166977 FBgn0248002 FBgn0157748 FBgn0157747 FBgn0137619 FBgn0119995 FBgn0111650 FBgn0111649 FBgn0098572 FBgn0098571 CPIJ018865 BGIBMGA014156 GB17970 GB13029 AGAP000726 AAEL015075 AAEL012814 AAEL009014 PB20172 PHUM089290 GLEAN_10166
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG14408 (Legube et al., 2006, Sambandan et al., 2006)
Name Synonym
Secondary FlyBase IDs
References ( 12 )
Research paper	Bjorklund et al., 2006, Nature 439(7079): 1009--1013 Identification of pathways regulating cell size and cell-cycle progression by RNAi. [FBrf0191233] Legube et al., 2006, Genes Dev. 20(7): 871--883 X-chromosome-wide profiling of MSL-1 distribution and dosage compensation in Drosophila. [FBrf0190549] Sambandan et al., 2006, Genetics 174(3): 1349--1363 Dynamic genetic interactions determine odor-guided behavior in Drosophila melanogaster. [FBrf0192106] Sinka et al., 2002, Development 129(14): 3469--3478 poirot, a new regulatory gene of Drosophila oskar acts at the level of the short Oskar protein isoform. [FBrf0151262]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Dietzl et al., 2007, Nature 448(7150): Supplementary Table 1. [FBrf0202579] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
FlyBase analysis	FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]