Gene Dmel\CG15027

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General Information

Symbol

Dmel\CG15027

Species

D. melanogaster

Name

Annotation symbol

CG15027

Feature type

protein_coding_gene

FlyBase ID

FBgn0030611

Gene Model Status

Current

Stock availability

1 publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

13A9-13A10

Sequence location

X:14,979,192..14,979,860 [-]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG15027 (FBgn0030611). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Protein of unknown function DUF2962. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during early larval stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, adult midgut, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1623724_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG15027. Gene sequence location is X:14979192..14979860.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

13A9-13A10

Limits computationally determined from genome sequence between P{EP}hiw^EP1308 and P{EP}Ahcy13^EP1007

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG15027 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene model reviewed during 5.44

Gene model reviewed during 5.50

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG15027-RA

FBtr0073965

NM_132771

602

180

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG15027-PA

FBpp0073782

21.1

180

10.25

NP_572999

AAF48422

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Protein of unknown function DUF2962 (IPR021346)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q9VXY4

UniProtKB/TrEMBL

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, adult midgut, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		138.175
Larval Midgut		67.5
Larval Hindgut		90.3
Larval Malpighian Tubules		64
Larval Fat Body		55.5
Larval Salivary Gland		153.5
Larval Trachea		183.525
Larval Carcass		123.4
Adult Head		93.9
Adult Eye		95.325
Adult Brain		71.3
Adult Thoracic-Abdominal Ganglion		63.4
Adult Crop		120.2
Adult Midgut		113.4
Adult Hindgut		96.7
Adult Malpighian Tubules		84.8
Adult Fat Body		141.9
Adult Salivary Gland		148.8
Adult Heart		120.15
Adult VirginFemale Spermatheca		149.1
Adult InseminatedFemale Spermatheca		200.7
Adult Ovary		171
Adult Testis		29.8
Adult Male Accessory Gland		197.7
Adult Carcass		96.4
Expression Level Scale		None Low Moderate

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		138.175
Larval Midgut		67.5
Larval Hindgut		90.3
Larval Malpighian Tubules		64
Larval Fat Body		55.5
Larval Salivary Gland		153.5
Larval Trachea		183.525
Larval Carcass		123.4
Adult Head		93.9
Adult Eye		95.325
Adult Brain		71.3
Adult Thoracic-Abdominal Ganglion		63.4
Adult Crop		120.2
Adult Midgut		113.4
Adult Hindgut		96.7
Adult Malpighian Tubules		84.8
Adult Fat Body		141.9
Adult Salivary Gland		148.8
Adult Heart		120.15
Adult VirginFemale Spermatheca		149.1
Adult InseminatedFemale Spermatheca		200.7
Adult Ovary		171
Adult Testis		29.8
Adult Male Accessory Gland		197.7
Adult Carcass		96.4
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		138.175
Larval Midgut		67.5
Larval Hindgut		90.3
Larval Malpighian Tubules		64
Larval Fat Body		55.5
Larval Salivary Gland		153.5
Larval Trachea		183.525
Larval Carcass		123.4
Adult Head		93.9
Adult Eye		95.325
Adult Brain		71.3
Adult Thoracic-Abdominal Ganglion		63.4
Adult Crop		120.2
Adult Midgut		113.4
Adult Hindgut		96.7
Adult Malpighian Tubules		84.8
Adult Fat Body		141.9
Adult Salivary Gland		148.8
Adult Heart		120.15
Adult VirginFemale Spermatheca		149.1
Adult InseminatedFemale Spermatheca		200.7
Adult Ovary		171
Adult Testis		29.8
Adult Male Accessory Gland		197.7
Adult Carcass		96.4
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		138.175
Larval Midgut		67.5
Larval Hindgut		90.3
Larval Malpighian Tubules		64
Larval Fat Body		55.5
Larval Salivary Gland		153.5
Larval Trachea		183.525
Larval Carcass		123.4
Adult Head		93.9
Adult Eye		95.325
Adult Brain		71.3
Adult Thoracic-Abdominal Ganglion		63.4
Adult Crop		120.2
Adult Midgut		113.4
Adult Hindgut		96.7
Adult Malpighian Tubules		84.8
Adult Fat Body		141.9
Adult Salivary Gland		148.8
Adult Heart		120.15
Adult VirginFemale Spermatheca		149.1
Adult InseminatedFemale Spermatheca		200.7
Adult Ovary		171
Adult Testis		29.8
Adult Male Accessory Gland		197.7
Adult Carcass		96.4
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		138.175
Larval Midgut		67.5
Larval Hindgut		90.3
Larval Malpighian Tubules		64
Larval Fat Body		55.5
Larval Salivary Gland		153.5
Larval Trachea		183.525
Larval Carcass		123.4
Adult Head		93.9
Adult Eye		95.325
Adult Brain		71.3
Adult Thoracic-Abdominal Ganglion		63.4
Adult Crop		120.2
Adult Midgut		113.4
Adult Hindgut		96.7
Adult Malpighian Tubules		84.8
Adult Fat Body		141.9
Adult Salivary Gland		148.8
Adult Heart		120.15
Adult VirginFemale Spermatheca		149.1
Adult InseminatedFemale Spermatheca		200.7
Adult Ovary		171
Adult Testis		29.8
Adult Male Accessory Gland		197.7
Adult Carcass		96.4
Expression Level Scale		None Low Moderate

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		138.175
Larval Midgut		67.5
Larval Hindgut		90.3
Larval Malpighian Tubules		64
Larval Fat Body		55.5
Larval Salivary Gland		153.5
Larval Trachea		183.525
Larval Carcass		123.4
Adult Head		93.9
Adult Eye		95.325
Adult Brain		71.3
Adult Thoracic-Abdominal Ganglion		63.4
Adult Crop		120.2
Adult Midgut		113.4
Adult Hindgut		96.7
Adult Malpighian Tubules		84.8
Adult Fat Body		141.9
Adult Salivary Gland		148.8
Adult Heart		120.15
Adult VirginFemale Spermatheca		149.1
Adult InseminatedFemale Spermatheca		200.7
Adult Ovary		171
Adult Testis		29.8
Adult Male Accessory Gland		197.7
Adult Carcass		96.4
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		138.175
Larval Midgut		67.5
Larval Hindgut		90.3
Larval Malpighian Tubules		64
Larval Fat Body		55.5
Larval Salivary Gland		153.5
Larval Trachea		183.525
Larval Carcass		123.4
Adult Head		93.9
Adult Eye		95.325
Adult Brain		71.3
Adult Thoracic-Abdominal Ganglion		63.4
Adult Crop		120.2
Adult Midgut		113.4
Adult Hindgut		96.7
Adult Malpighian Tubules		84.8
Adult Fat Body		141.9
Adult Salivary Gland		148.8
Adult Heart		120.15
Adult VirginFemale Spermatheca		149.1
Adult InseminatedFemale Spermatheca		200.7
Adult Ovary		171
Adult Testis		29.8
Adult Male Accessory Gland		197.7
Adult Carcass		96.4
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		138.175
Larval Midgut		67.5
Larval Hindgut		90.3
Larval Malpighian Tubules		64
Larval Fat Body		55.5
Larval Salivary Gland		153.5
Larval Trachea		183.525
Larval Carcass		123.4
Adult Head		93.9
Adult Eye		95.325
Adult Brain		71.3
Adult Thoracic-Abdominal Ganglion		63.4
Adult Crop		120.2
Adult Midgut		113.4
Adult Hindgut		96.7
Adult Malpighian Tubules		84.8
Adult Fat Body		141.9
Adult Salivary Gland		148.8
Adult Heart		120.15
Adult VirginFemale Spermatheca		149.1
Adult InseminatedFemale Spermatheca		200.7
Adult Ovary		171
Adult Testis		29.8
Adult Male Accessory Gland		197.7
Adult Carcass		96.4
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	93.9
NA	Eye	95.325
NA	Brain	71.3
138.175	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	63.4
NA	Crop	120.2
67.5	Midgut	113.4
90.3	Hindgut	96.7
64	Malpighian Tubules	84.8
55.5	Fat Body	141.9
153.5	Salivary Gland	148.8
NA	Heart	120.15
183.525	Trachea	NA
NA	VirginFemale Spermatheca	149.1
NA	InseminatedFemale Spermatheca	200.7
NA	Ovary	171
NA	Testis	29.8
NA	Male Accessory Gland	197.7
123.4	Carcass	96.4

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		10
central nervous system, larvae L3		12
central nervous system, pupae P8		6
head, virgin 1-day female		6
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		13
head, mated 4-day female		16
head, mated 20-day female		10
head, mated 1-day male		6
head, mated 4-day male		8
head, mated 20-day male		10
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		14
digestive system, 1-day adult		10
digestive system, 4-day adult		12
digestive system, 20-day adult		9
fat body, larvae L3 wandering		2
fat body, white prepupae		5
fat body, pupae P8		3
carcass, larvae L3 wandering		11
carcass, 1-day adult		8
carcass, 4-day adult		14
carcass, 20-day adult		8
ovary, virgin 4-day female		17
ovary, mated 4-day female		19
testis, mated 4-day male		11
accessory gland, mated 4-day male		11
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		10
central nervous system, larvae L3		12
central nervous system, pupae P8		6
head, virgin 1-day female		6
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		13
head, mated 4-day female		16
head, mated 20-day female		10
head, mated 1-day male		6
head, mated 4-day male		8
head, mated 20-day male		10
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		14
digestive system, 1-day adult		10
digestive system, 4-day adult		12
digestive system, 20-day adult		9
fat body, larvae L3 wandering		2
fat body, white prepupae		5
fat body, pupae P8		3
carcass, larvae L3 wandering		11
carcass, 1-day adult		8
carcass, 4-day adult		14
carcass, 20-day adult		8
ovary, virgin 4-day female		17
ovary, mated 4-day female		19
testis, mated 4-day male		11
accessory gland, mated 4-day male		11
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		10
central nervous system, larvae L3		12
central nervous system, pupae P8		6
head, virgin 1-day female		6
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		13
head, mated 4-day female		16
head, mated 20-day female		10
head, mated 1-day male		6
head, mated 4-day male		8
head, mated 20-day male		10
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		14
digestive system, 1-day adult		10
digestive system, 4-day adult		12
digestive system, 20-day adult		9
fat body, larvae L3 wandering		2
fat body, white prepupae		5
fat body, pupae P8		3
carcass, larvae L3 wandering		11
carcass, 1-day adult		8
carcass, 4-day adult		14
carcass, 20-day adult		8
ovary, virgin 4-day female		17
ovary, mated 4-day female		19
testis, mated 4-day male		11
accessory gland, mated 4-day male		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		10
central nervous system, larvae L3		12
central nervous system, pupae P8		6
head, virgin 1-day female		6
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		13
head, mated 4-day female		16
head, mated 20-day female		10
head, mated 1-day male		6
head, mated 4-day male		8
head, mated 20-day male		10
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		14
digestive system, 1-day adult		10
digestive system, 4-day adult		12
digestive system, 20-day adult		9
fat body, larvae L3 wandering		2
fat body, white prepupae		5
fat body, pupae P8		3
carcass, larvae L3 wandering		11
carcass, 1-day adult		8
carcass, 4-day adult		14
carcass, 20-day adult		8
ovary, virgin 4-day female		17
ovary, mated 4-day female		19
testis, mated 4-day male		11
accessory gland, mated 4-day male		11
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		10
central nervous system, larvae L3		12
central nervous system, pupae P8		6
head, virgin 1-day female		6
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		13
head, mated 4-day female		16
head, mated 20-day female		10
head, mated 1-day male		6
head, mated 4-day male		8
head, mated 20-day male		10
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		14
digestive system, 1-day adult		10
digestive system, 4-day adult		12
digestive system, 20-day adult		9
fat body, larvae L3 wandering		2
fat body, white prepupae		5
fat body, pupae P8		3
carcass, larvae L3 wandering		11
carcass, 1-day adult		8
carcass, 4-day adult		14
carcass, 20-day adult		8
ovary, virgin 4-day female		17
ovary, mated 4-day female		19
testis, mated 4-day male		11
accessory gland, mated 4-day male		11
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		10
central nervous system, larvae L3		12
central nervous system, pupae P8		6
head, virgin 1-day female		6
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		13
head, mated 4-day female		16
head, mated 20-day female		10
head, mated 1-day male		6
head, mated 4-day male		8
head, mated 20-day male		10
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		14
digestive system, 1-day adult		10
digestive system, 4-day adult		12
digestive system, 20-day adult		9
fat body, larvae L3 wandering		2
fat body, white prepupae		5
fat body, pupae P8		3
carcass, larvae L3 wandering		11
carcass, 1-day adult		8
carcass, 4-day adult		14
carcass, 20-day adult		8
ovary, virgin 4-day female		17
ovary, mated 4-day female		19
testis, mated 4-day male		11
accessory gland, mated 4-day male		11
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		10
central nervous system, larvae L3		12
central nervous system, pupae P8		6
head, virgin 1-day female		6
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		13
head, mated 4-day female		16
head, mated 20-day female		10
head, mated 1-day male		6
head, mated 4-day male		8
head, mated 20-day male		10
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		14
digestive system, 1-day adult		10
digestive system, 4-day adult		12
digestive system, 20-day adult		9
fat body, larvae L3 wandering		2
fat body, white prepupae		5
fat body, pupae P8		3
carcass, larvae L3 wandering		11
carcass, 1-day adult		8
carcass, 4-day adult		14
carcass, 20-day adult		8
ovary, virgin 4-day female		17
ovary, mated 4-day female		19
testis, mated 4-day male		11
accessory gland, mated 4-day male		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		10
central nervous system, larvae L3		12
central nervous system, pupae P8		6
head, virgin 1-day female		6
head, virgin 4-day female		12
head, virgin 20-day female		7
head, mated 1-day female		13
head, mated 4-day female		16
head, mated 20-day female		10
head, mated 1-day male		6
head, mated 4-day male		8
head, mated 20-day male		10
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		14
digestive system, 1-day adult		10
digestive system, 4-day adult		12
digestive system, 20-day adult		9
fat body, larvae L3 wandering		2
fat body, white prepupae		5
fat body, pupae P8		3
carcass, larvae L3 wandering		11
carcass, 1-day adult		8
carcass, 4-day adult		14
carcass, 20-day adult		8
ovary, virgin 4-day female		17
ovary, mated 4-day female		19
testis, mated 4-day male		11
accessory gland, mated 4-day male		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during early larval stages.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		13
embryo 02-04hr		19
embryo 04-06hr		29
embryo 06-08hr		36
embryo 08-10hr		33
embryo 10-12hr		32
embryo 12-14hr		24
embryo 14-16hr		18
embryo 16-18hr		17
embryo 18-20hr		19
embryo 20-22hr		49
embryo 22-24hr		46
larva L1		58
larva L2		33
larva L3 12hr old		20
larva L3 puffstage 1-2		11
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		15
white prepupae new		14
white prepupae 12hr		13
white prepupae 24hr		12
pupae 2d postWPP		13
pupae 3d postWPP		9
pupae 4d postWPP		10
adult male 01day		11
adult male 05day		11
adult male 30day		10
adult female 01day		25
adult female 05day		28
adult female 30day		27
Expression Level Scale		Very low Low Moderate Moderately high High

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		13
embryo 02-04hr		19
embryo 04-06hr		(29)
embryo 06-08hr		(36)
embryo 08-10hr		(33)
embryo 10-12hr		(32)
embryo 12-14hr		24
embryo 14-16hr		18
embryo 16-18hr		17
embryo 18-20hr		19
embryo 20-22hr		(49)
embryo 22-24hr		(46)
larva L1		(58)
larva L2		(33)
larva L3 12hr old		20
larva L3 puffstage 1-2		11
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		15
white prepupae new		14
white prepupae 12hr		13
white prepupae 24hr		12
pupae 2d postWPP		13
pupae 3d postWPP		9
pupae 4d postWPP		10
adult male 01day		11
adult male 05day		11
adult male 30day		10
adult female 01day		25
adult female 05day		(28)
adult female 30day		(27)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		13
embryo 02-04hr		19
embryo 04-06hr		29
embryo 06-08hr		36
embryo 08-10hr		33
embryo 10-12hr		32
embryo 12-14hr		24
embryo 14-16hr		18
embryo 16-18hr		17
embryo 18-20hr		19
embryo 20-22hr		49
embryo 22-24hr		46
larva L1		58
larva L2		33
larva L3 12hr old		20
larva L3 puffstage 1-2		11
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		15
white prepupae new		14
white prepupae 12hr		13
white prepupae 24hr		12
pupae 2d postWPP		13
pupae 3d postWPP		9
pupae 4d postWPP		10
adult male 01day		11
adult male 05day		11
adult male 30day		10
adult female 01day		25
adult female 05day		28
adult female 30day		27
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		13
embryo 02-04hr		19
embryo 04-06hr		29
embryo 06-08hr		36
embryo 08-10hr		33
embryo 10-12hr		32
embryo 12-14hr		24
embryo 14-16hr		18
embryo 16-18hr		17
embryo 18-20hr		19
embryo 20-22hr		49
embryo 22-24hr		46
larva L1		58
larva L2		33
larva L3 12hr old		20
larva L3 puffstage 1-2		11
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		15
white prepupae new		14
white prepupae 12hr		13
white prepupae 24hr		12
pupae 2d postWPP		13
pupae 3d postWPP		9
pupae 4d postWPP		10
adult male 01day		11
adult male 05day		11
adult male 30day		10
adult female 01day		25
adult female 05day		28
adult female 30day		27
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		13
embryo 02-04hr		19
embryo 04-06hr		29
embryo 06-08hr		36
embryo 08-10hr		33
embryo 10-12hr		32
embryo 12-14hr		24
embryo 14-16hr		18
embryo 16-18hr		17
embryo 18-20hr		19
embryo 20-22hr		49
embryo 22-24hr		46
larva L1		58
larva L2		33
larva L3 12hr old		20
larva L3 puffstage 1-2		11
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		15
white prepupae new		14
white prepupae 12hr		13
white prepupae 24hr		12
pupae 2d postWPP		13
pupae 3d postWPP		9
pupae 4d postWPP		10
adult male 01day		11
adult male 05day		11
adult male 30day		10
adult female 01day		25
adult female 05day		28
adult female 30day		27
Expression Level Scale		Very low Low Moderate Moderately high High

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		13
embryo 02-04hr		19
embryo 04-06hr		29
embryo 06-08hr		(36)
embryo 08-10hr		(33)
embryo 10-12hr		32
embryo 12-14hr		24
embryo 14-16hr		18
embryo 16-18hr		17
embryo 18-20hr		19
embryo 20-22hr		(49)
embryo 22-24hr		(46)
larva L1		(58)
larva L2		(33)
larva L3 12hr old		20
larva L3 puffstage 1-2		11
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		15
white prepupae new		14
white prepupae 12hr		13
white prepupae 24hr		12
pupae 2d postWPP		13
pupae 3d postWPP		9
pupae 4d postWPP		10
adult male 01day		11
adult male 05day		11
adult male 30day		10
adult female 01day		25
adult female 05day		28
adult female 30day		27
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		13
embryo 02-04hr		19
embryo 04-06hr		29
embryo 06-08hr		36
embryo 08-10hr		33
embryo 10-12hr		32
embryo 12-14hr		24
embryo 14-16hr		18
embryo 16-18hr		17
embryo 18-20hr		19
embryo 20-22hr		49
embryo 22-24hr		46
larva L1		58
larva L2		33
larva L3 12hr old		20
larva L3 puffstage 1-2		11
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		15
white prepupae new		14
white prepupae 12hr		13
white prepupae 24hr		12
pupae 2d postWPP		13
pupae 3d postWPP		9
pupae 4d postWPP		10
adult male 01day		11
adult male 05day		11
adult male 30day		10
adult female 01day		25
adult female 05day		28
adult female 30day		27
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		13
embryo 02-04hr		19
embryo 04-06hr		29
embryo 06-08hr		36
embryo 08-10hr		33
embryo 10-12hr		32
embryo 12-14hr		24
embryo 14-16hr		18
embryo 16-18hr		17
embryo 18-20hr		19
embryo 20-22hr		49
embryo 22-24hr		46
larva L1		58
larva L2		33
larva L3 12hr old		20
larva L3 puffstage 1-2		11
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		15
white prepupae new		14
white prepupae 12hr		13
white prepupae 24hr		12
pupae 2d postWPP		13
pupae 3d postWPP		9
pupae 4d postWPP		10
adult male 01day		11
adult male 05day		11
adult male 30day		10
adult female 01day		25
adult female 05day		28
adult female 30day		27
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		82
Schneider line 2 Sg4		20
embryonic 1182-4H		21
embryonic GM2		14
embryonic Kc167		21
embryonic S1		12
embryonic S3		12
leg disc CME L1		24
wing disc CME-W2		9
wing disc ML-DmD8		12
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		14
wing disc ML-DmD21		44
wing disc ML-DmD32		12
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		21
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		30
CNS ML-DmBG2-c2		14
tumorous blood cells mbn2		11
ovary fGS/OSS		16
ovary OSC		14
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		(82)
Schneider line 2 Sg4		20
embryonic 1182-4H		21
embryonic GM2		14
embryonic Kc167		21
embryonic S1		12
embryonic S3		12
leg disc CME L1		24
wing disc CME-W2		9
wing disc ML-DmD8		12
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		14
wing disc ML-DmD21		(44)
wing disc ML-DmD32		12
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		21
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		(30)
CNS ML-DmBG2-c2		14
tumorous blood cells mbn2		11
ovary fGS/OSS		16
ovary OSC		14
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		82
Schneider line 2 Sg4		20
embryonic 1182-4H		21
embryonic GM2		14
embryonic Kc167		21
embryonic S1		12
embryonic S3		12
leg disc CME L1		24
wing disc CME-W2		9
wing disc ML-DmD8		12
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		14
wing disc ML-DmD21		44
wing disc ML-DmD32		12
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		21
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		30
CNS ML-DmBG2-c2		14
tumorous blood cells mbn2		11
ovary fGS/OSS		16
ovary OSC		14
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		82
Schneider line 2 Sg4		20
embryonic 1182-4H		21
embryonic GM2		14
embryonic Kc167		21
embryonic S1		12
embryonic S3		12
leg disc CME L1		24
wing disc CME-W2		9
wing disc ML-DmD8		12
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		14
wing disc ML-DmD21		44
wing disc ML-DmD32		12
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		21
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		30
CNS ML-DmBG2-c2		14
tumorous blood cells mbn2		11
ovary fGS/OSS		16
ovary OSC		14
ovary OSS		11
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		82
Schneider line 2 Sg4		20
embryonic 1182-4H		21
embryonic GM2		14
embryonic Kc167		21
embryonic S1		12
embryonic S3		12
leg disc CME L1		24
wing disc CME-W2		9
wing disc ML-DmD8		12
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		14
wing disc ML-DmD21		44
wing disc ML-DmD32		12
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		21
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		30
CNS ML-DmBG2-c2		14
tumorous blood cells mbn2		11
ovary fGS/OSS		16
ovary OSC		14
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		(82)
Schneider line 2 Sg4		20
embryonic 1182-4H		21
embryonic GM2		14
embryonic Kc167		21
embryonic S1		12
embryonic S3		12
leg disc CME L1		24
wing disc CME-W2		9
wing disc ML-DmD8		12
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		14
wing disc ML-DmD21		(44)
wing disc ML-DmD32		12
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		21
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		30
CNS ML-DmBG2-c2		14
tumorous blood cells mbn2		11
ovary fGS/OSS		16
ovary OSC		14
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		82
Schneider line 2 Sg4		20
embryonic 1182-4H		21
embryonic GM2		14
embryonic Kc167		21
embryonic S1		12
embryonic S3		12
leg disc CME L1		24
wing disc CME-W2		9
wing disc ML-DmD8		12
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		14
wing disc ML-DmD21		44
wing disc ML-DmD32		12
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		21
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		30
CNS ML-DmBG2-c2		14
tumorous blood cells mbn2		11
ovary fGS/OSS		16
ovary OSC		14
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		82
Schneider line 2 Sg4		20
embryonic 1182-4H		21
embryonic GM2		14
embryonic Kc167		21
embryonic S1		12
embryonic S3		12
leg disc CME L1		24
wing disc CME-W2		9
wing disc ML-DmD8		12
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		14
wing disc ML-DmD21		44
wing disc ML-DmD32		12
haltere disc ML-DmD17-c3		8
eye-antennal disc ML-DmD11		21
antennal disc ML-DmD20-c5		11
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		30
CNS ML-DmBG2-c2		14
tumorous blood cells mbn2		11
ovary fGS/OSS		16
ovary OSC		14
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		16
cold shock, 4-day adult		11
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		9
Cadmium 50 mM 48 hrs, 4-day adult		16
Cadmium 100 mM 48 hrs, 4-day adult		15
Copper 0.5 mM 12 hrs, larvae L3		19
Copper 15 mM 48 hrs, 4-day adult		13
Zinc 5 mM 12 hrs, larvae L3		15
Zinc 4.5 mM 48 hrs, 4-day adult		14
Ethanol 2.5% 3 hrs, larvae L3		17
Ethanol 5% 3 hrs, larvae L3		7
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		24
Caffeine 25 mg/ml 48 hrs, 4-day adult		14
Paraquat 5 mM 48 hrs, 4-day adult		21
Paraquat 10 mM 48 hrs, 4-day adult		17
Rotenone 2 μg 12 hrs, larvae L3		14
Rotenone 8 μg 12 hrs, larvae L3		27
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		16
cold shock, 4-day adult		11
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		9
Cadmium 50 mM 48 hrs, 4-day adult		16
Cadmium 100 mM 48 hrs, 4-day adult		15
Copper 0.5 mM 12 hrs, larvae L3		19
Copper 15 mM 48 hrs, 4-day adult		13
Zinc 5 mM 12 hrs, larvae L3		15
Zinc 4.5 mM 48 hrs, 4-day adult		14
Ethanol 2.5% 3 hrs, larvae L3		17
Ethanol 5% 3 hrs, larvae L3		7
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		24
Caffeine 25 mg/ml 48 hrs, 4-day adult		14
Paraquat 5 mM 48 hrs, 4-day adult		21
Paraquat 10 mM 48 hrs, 4-day adult		17
Rotenone 2 μg 12 hrs, larvae L3		14
Rotenone 8 μg 12 hrs, larvae L3		(27)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		16
cold shock, 4-day adult		11
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		9
Cadmium 50 mM 48 hrs, 4-day adult		16
Cadmium 100 mM 48 hrs, 4-day adult		15
Copper 0.5 mM 12 hrs, larvae L3		19
Copper 15 mM 48 hrs, 4-day adult		13
Zinc 5 mM 12 hrs, larvae L3		15
Zinc 4.5 mM 48 hrs, 4-day adult		14
Ethanol 2.5% 3 hrs, larvae L3		17
Ethanol 5% 3 hrs, larvae L3		7
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		24
Caffeine 25 mg/ml 48 hrs, 4-day adult		14
Paraquat 5 mM 48 hrs, 4-day adult		21
Paraquat 10 mM 48 hrs, 4-day adult		17
Rotenone 2 μg 12 hrs, larvae L3		14
Rotenone 8 μg 12 hrs, larvae L3		27
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		16
cold shock, 4-day adult		11
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		9
Cadmium 50 mM 48 hrs, 4-day adult		16
Cadmium 100 mM 48 hrs, 4-day adult		15
Copper 0.5 mM 12 hrs, larvae L3		19
Copper 15 mM 48 hrs, 4-day adult		13
Zinc 5 mM 12 hrs, larvae L3		15
Zinc 4.5 mM 48 hrs, 4-day adult		14
Ethanol 2.5% 3 hrs, larvae L3		17
Ethanol 5% 3 hrs, larvae L3		7
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		24
Caffeine 25 mg/ml 48 hrs, 4-day adult		14
Paraquat 5 mM 48 hrs, 4-day adult		21
Paraquat 10 mM 48 hrs, 4-day adult		17
Rotenone 2 μg 12 hrs, larvae L3		14
Rotenone 8 μg 12 hrs, larvae L3		27
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		16
cold shock, 4-day adult		11
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		9
Cadmium 50 mM 48 hrs, 4-day adult		16
Cadmium 100 mM 48 hrs, 4-day adult		15
Copper 0.5 mM 12 hrs, larvae L3		19
Copper 15 mM 48 hrs, 4-day adult		13
Zinc 5 mM 12 hrs, larvae L3		15
Zinc 4.5 mM 48 hrs, 4-day adult		14
Ethanol 2.5% 3 hrs, larvae L3		17
Ethanol 5% 3 hrs, larvae L3		7
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		24
Caffeine 25 mg/ml 48 hrs, 4-day adult		14
Paraquat 5 mM 48 hrs, 4-day adult		21
Paraquat 10 mM 48 hrs, 4-day adult		17
Rotenone 2 μg 12 hrs, larvae L3		14
Rotenone 8 μg 12 hrs, larvae L3		27
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		16
cold shock, 4-day adult		11
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		9
Cadmium 50 mM 48 hrs, 4-day adult		16
Cadmium 100 mM 48 hrs, 4-day adult		15
Copper 0.5 mM 12 hrs, larvae L3		19
Copper 15 mM 48 hrs, 4-day adult		13
Zinc 5 mM 12 hrs, larvae L3		15
Zinc 4.5 mM 48 hrs, 4-day adult		14
Ethanol 2.5% 3 hrs, larvae L3		17
Ethanol 5% 3 hrs, larvae L3		7
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		24
Caffeine 25 mg/ml 48 hrs, 4-day adult		14
Paraquat 5 mM 48 hrs, 4-day adult		21
Paraquat 10 mM 48 hrs, 4-day adult		17
Rotenone 2 μg 12 hrs, larvae L3		14
Rotenone 8 μg 12 hrs, larvae L3		27
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		16
cold shock, 4-day adult		11
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		9
Cadmium 50 mM 48 hrs, 4-day adult		16
Cadmium 100 mM 48 hrs, 4-day adult		15
Copper 0.5 mM 12 hrs, larvae L3		19
Copper 15 mM 48 hrs, 4-day adult		13
Zinc 5 mM 12 hrs, larvae L3		15
Zinc 4.5 mM 48 hrs, 4-day adult		14
Ethanol 2.5% 3 hrs, larvae L3		17
Ethanol 5% 3 hrs, larvae L3		7
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		24
Caffeine 25 mg/ml 48 hrs, 4-day adult		14
Paraquat 5 mM 48 hrs, 4-day adult		21
Paraquat 10 mM 48 hrs, 4-day adult		17
Rotenone 2 μg 12 hrs, larvae L3		14
Rotenone 8 μg 12 hrs, larvae L3		27
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		16
cold shock, 4-day adult		11
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		9
Cadmium 50 mM 48 hrs, 4-day adult		16
Cadmium 100 mM 48 hrs, 4-day adult		15
Copper 0.5 mM 12 hrs, larvae L3		19
Copper 15 mM 48 hrs, 4-day adult		13
Zinc 5 mM 12 hrs, larvae L3		15
Zinc 4.5 mM 48 hrs, 4-day adult		14
Ethanol 2.5% 3 hrs, larvae L3		17
Ethanol 5% 3 hrs, larvae L3		7
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		24
Caffeine 25 mg/ml 48 hrs, 4-day adult		14
Paraquat 5 mM 48 hrs, 4-day adult		21
Paraquat 10 mM 48 hrs, 4-day adult		17
Rotenone 2 μg 12 hrs, larvae L3		14
Rotenone 8 μg 12 hrs, larvae L3		27
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010, Graveley et al., 2011)

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0030611

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG15027-RA

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

lethal | pupal stage, with Scer\GAL4^pnr-MD237

CG15027^GD7693

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of CG15027	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 3 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG15027	Mutagen	Stocks	Known lesion
CG15027^GD7693	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG15027^KK101693	in vitro construct - RNAi in vitro construct - regulatory fusion	0	Yes
CG15027^NIG.15027R	in vitro construct - RNAi in vitro construct - regulatory fusion	0	Yes

Aneuploid Aberrations

Disrupted in

Df(1)Exel6249

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD7693}

P{KK101693}

P{NIG.15027R}

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

There is no information supporting a biological process, cellular component or molecular function term for this gene.

(Based on a review of available data on: 2008-02-22)

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG15027 allele

Gene

References

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0030611

Orthologs

OrthoDB Orthologs (34) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG679FTK

Dipteran inclusive ortholog search

EOG6XH08B

Insect inclusive ortholog search

EOG6D25MN

Arthropod inclusive ortholog search

EOG6M6419

Metazoa inclusive ortholog search

EOG679T31

Orthologs in Drosophila Species (EOG679FTK)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA13444

Drosophila persimilis

Dper\GL15206

Drosophila willistoni

Dwil\GK25768

Drosophila virilis

Dvir\GJ15701

Drosophila mojavensis

Dmoj\GI21557

Drosophila grimshawi

Dgri\GH24312

Orthologs in non-Drosophila Dipterans (EOG6XH08B)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL000408

Anopheles gambiae

Malaria mosquito

Agam\AGAP003543

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ007468

Orthologs in non-Dipteran Insects (EOG6D25MN)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Apis mellifera

Western honey bee

Amel\GB54882

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG009163

Harpegnathos saltator

Jerdons jumping ant

Hsal\HSAL16123

Linepithema humile

Argentine ant

Lhum\LH17548

Pogonomyrmex barbatus

Red harvester ant

Pbar\PB26205

Pogonomyrmex barbatus

Red harvester ant

Pbar\PB16970

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI006987

Bombyx mori

Silkmoth

Bmor\BGIBMGA012774

Pediculus humanus

Human body louse

Phum\PHUM269160

Tribolium castaneum

Red flour beetle

Tcas\TC030572

Orthologs in non-Insect Arthropods (EOG6M6419)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Daphnia pulex

Water flea

Dpux\JGI_V11_211164

Orthologs in non-Arthropod Metazoa (EOG679T31)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_017854gn

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_024164gn

Danio rerio

Zebrafish

Drer\CH211-42I9.3

Xenopus tropicalis

Western clawed frog

Xtro\ENSXETG00000004891

Gallus gallus

Domestic chicken

Ggal\C4orf43

Mus musculus

House mouse

Mmus\ENSMUSG00000025591

Rattus norvegicus

Norway rat

Rnor\RGD1305222

Homo sapiens

Human

Hsap\ENSG00000198498

Human Orthologs (1)

Gene

OMIM

HGNC

Hsap\ENSG00000198498

AAA Orthologs (11) based on analysis using Dmel annotation version 4.3

Organism

Gene

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA13444

Drosophila persimilis

Dper\GL15206

Drosophila willistoni

Dwil\GK25768

Drosophila virilis

Dvir\GJ15701

Drosophila mojavensis

Dmoj\GI21557

Drosophila grimshawi

Dgri\GH24312

Stocks & Reagents

Stocks Listed in FlyBase ( 1 )

VDRC

v24627

w¹¹¹⁸; P{GD7693}v24627

Genomic Clones ( 2 )

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 14 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

SD22530

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0030611

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

32440

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Source for merge of: CG15027 BcDNA:SD22530

(FlyBase, 1996-)

Additional comments

Source for merge of CG15027 BcDNA:SD22530 was a shared cDNA (date:030728).

(FlyBase, 1996-)

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_132771

RefSeq (Proteins)

•

NP_572999

DDBJ / EMBL / GenBank

•

Entrez Gene - A searchable database of RefSeq genes.

•

32440

UniProtKB/Swiss-Prot

•

Q9VXY4

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Protein of unknown function DUF2962 (IPR021346)

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0030611

DRSC - Results from RNAi screens.

•

FBgn0030611

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0030611

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG15027-RA

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0030611

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

32440

modMine - Data generated by the modENCODE project.

•

FBgn0030611

Synonyms & Secondary IDs ( 2 )

Reported As

Symbol Synonym

BcDNA:SD22530

CG15027

(Iida et al., 2007, Keleman et al., 2009.8.5, Japanese National Institute of Genetics, 2012.5.21)

Name Synonym

Secondary FlyBase IDs

FBgn0062855

References ( 12 )

Research paper

Iida et al., 2007, BMC Evol. Biol. 7: 75: Expansion and evolution of insect GMC oxidoreductases. [FBrf0202218]
Avidor-Reiss et al., 2004, Cell 117(4): 527--539: Decoding cilia function; defining specialized genes required for compartmentalized cilia biogenesis. [FBrf0174448]

Supplementary material

Graveley et al., 2011, Nature 471(7339):: Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980]
The modENCODE Consortium, 2010, Science 330(6012):: DataS14: Gene co-expression clusters. [FBrf0213979]
Mummery-Widmer et al., 2009, Nature 458(7241):: Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]

Personal communication to FlyBase

Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file): Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]

FlyBase analysis

FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase.: Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398]
FlyBase, 1996-, FlyBase inference based on genome sequence analysis.: FlyBase inference based on genome sequence analysis. [FBrf0104946]

Stock list

Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY.: RNAi stocks available from NIG-FLY. [FBrf0218457]