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Gene Dmel\CG6227

General Information
Symbol	Dmel\CG6227	Species	D. melanogaster
Name		Annotation symbol	CG6227
Feature type	protein_coding_gene	FlyBase ID	FBgn0030631
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	13B7-13B8	Sequence location	X:15,239,152..15,244,054 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG6227 (FBgn0030631). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: mRNA binding; ATP-dependent RNA helicase activity; RNA helicase activity. There is experimental evidence that it is involved in the biological process: regulation of alternative nuclear mRNA splicing, via spliceosome. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: DEAD-like helicase; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; RNA helicase, ATP-dependent, DEAD-box, conserved site; RNA helicase, DEAD-box type, Q motif. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1638962_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG6227. Gene sequence location is X:15239152..15244054.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10	References Svetec et al., 2009, Mol. Biol. Evol. 26(7): 1549--1556
FB2012_01	Sequence features HFA19975 BKN28174
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 13B7-13B8   Limits computationally determined from genome sequence between P{EP}hiwEP1308 and P{EP}Ahcy13EP1007
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG6227 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG6227-RA FBtr0074011  NM_132792   4301   1224
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG6227-PA   FBpp0073828   136.3   1224   8.25     NP_573020   AAF48446
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • RNA helicase, ATP-dependent, DEAD-box, conserved site (IPR000629) Helicase, C-terminal (IPR001650) DNA/RNA helicase, DEAD/DEAH box type, N-terminal (IPR011545) DEAD-like helicase (IPR014001) RNA helicase, DEAD-box type, Q motif (IPR014014)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA440225   AA539869   AA539870   AA820334   AA940614   AA941699   AA949682   AA949847   AA950696   AA952169   AE014298 AAF48446   AI455397   AI455710   AI456736   AI515289   AI516195   AI534174   AI546210   AW942616   AY058515 AAL13744   BG638612   BG639112   BG639232   BI165762   BI166156   BI172516   BI214633   BI214834   BI214930   BI355014   BI367847   BI371236   BI485894   BI579208   BI633169   BT016090 AAV36975   CK604212   CK604213   CK604541   CK604573   CK604574   CK605129   CK605130   CK605305   CK605306   CL943583   CO187774   CO266867   CO270520   CO296740   CO299064   CO319758   CO342580   CZ476420   DN154411   EC057462   EC057666   EC082302   EC201796   EC206092   EC206131   EC213194   EC227465   EC258386   GH750692   GH752065   GH753047   GH754834   GH757007   GH758007   GH759701   GH760726   GH777298   GH780420   GH781121   GH784349   GH787209   GH788749   GH791818   GH794315   GH794375   GH794897   GH796015   GH799631   GH800496   GH802911   GH802978   GH805626   GH806551   GH806888   GH810283   GH810822   GH812358   GH815698   GH828100   GH828619   GH829430   GH830392   GH833105   GH835425   GH835549   GH841958   GH843036   GH843929   GH846526   GH847808   GH849698   GH851486   GH852652   GH855170   GH855545   GH857359   GH859444   GH859711   GH865579   GH866230   GH866489   GH870318   GH870328   GH872025   GH880895   GH881147   GH882263   GH884609   GH885578   GH886584   GH886681   GH891188   GH892963   GH894506   GH895301   GH895573   GH901362   GH902685   GH902983   GH905418   GH905566   GH905743   GH907420   GH910325   GH912086   GH914775   GH916626   GH916919   GH919101   GH922346   GH923047   GH927001   GH927157   GH934735   GH934826
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q95TU3 Q9VXW2
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0030631    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0030631 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0030631 expression level Developmental Stage   Expression Level embryo 00-02hr    3761 embryo 02-04hr    5417 embryo 04-06hr    4007 embryo 06-08hr    2909 embryo 08-10hr    2477 embryo 10-12hr    1831 embryo 12-14hr    1284 embryo 14-16hr    1602 embryo 16-18hr    1138 embryo 18-20hr    628 embryo 20-22hr    1387 embryo 22-24hr    968 larva L1    804 larva L2    769 larva L3 12hr old    638 larva L3 puffstage 1-2    446 larva L3 puffstage 3-6    659 larva L3 puffstage 7-9    669 white prepupae new    699 white prepupae 12hr    797 white prepupae 24hr    1041 pupae 2d postWPP    593 pupae 3d postWPP    265 pupae 4d postWPP    263 adult male 01day    353 adult male 05day    422 adult male 30day    475 adult female 01day    1273 adult female 05day    1830 adult female 30day    2002 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3761) embryo 02-04hr  (5417) embryo 04-06hr  (4007) embryo 06-08hr  (2909) embryo 08-10hr  (2477) embryo 10-12hr  (1831) embryo 12-14hr  (1284) embryo 14-16hr  (1602) embryo 16-18hr  (1138) embryo 18-20hr  (628) embryo 20-22hr  (1387) embryo 22-24hr  (968) larva L1  (804) larva L2  (769) larva L3 12hr old  (638) larva L3 puffstage 1-2  (446) larva L3 puffstage 3-6  (659) larva L3 puffstage 7-9  (669) white prepupae new  (699) white prepupae 12hr  (797) white prepupae 24hr  (1041) pupae 2d postWPP  (593) pupae 3d postWPP  (265) pupae 4d postWPP  (263) adult male 01day  (353) adult male 05day  (422) adult male 30day  (475) adult female 01day  (1273) adult female 05day  (1830) adult female 30day  (2002) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3761) embryo 02-04hr  (5417) embryo 04-06hr  (4007) embryo 06-08hr  (2909) embryo 08-10hr  (2477) embryo 10-12hr  (1831) embryo 12-14hr    1284 embryo 14-16hr  (1602) embryo 16-18hr    1138 embryo 18-20hr    628 embryo 20-22hr    1387 embryo 22-24hr    968 larva L1    804 larva L2    769 larva L3 12hr old    638 larva L3 puffstage 1-2    446 larva L3 puffstage 3-6    659 larva L3 puffstage 7-9    669 white prepupae new    699 white prepupae 12hr    797 white prepupae 24hr    1041 pupae 2d postWPP    593 pupae 3d postWPP    265 pupae 4d postWPP    263 adult male 01day    353 adult male 05day    422 adult male 30day    475 adult female 01day    1273 adult female 05day  (1830) adult female 30day  (2002) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3761 embryo 02-04hr    5417 embryo 04-06hr    4007 embryo 06-08hr    2909 embryo 08-10hr    2477 embryo 10-12hr    1831 embryo 12-14hr    1284 embryo 14-16hr    1602 embryo 16-18hr    1138 embryo 18-20hr    628 embryo 20-22hr    1387 embryo 22-24hr    968 larva L1    804 larva L2    769 larva L3 12hr old    638 larva L3 puffstage 1-2    446 larva L3 puffstage 3-6    659 larva L3 puffstage 7-9    669 white prepupae new    699 white prepupae 12hr    797 white prepupae 24hr    1041 pupae 2d postWPP    593 pupae 3d postWPP    265 pupae 4d postWPP    263 adult male 01day    353 adult male 05day    422 adult male 30day    475 adult female 01day    1273 adult female 05day    1830 adult female 30day    2002 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3761 embryo 02-04hr    5417 embryo 04-06hr    4007 embryo 06-08hr    2909 embryo 08-10hr    2477 embryo 10-12hr    1831 embryo 12-14hr    1284 embryo 14-16hr    1602 embryo 16-18hr    1138 embryo 18-20hr    628 embryo 20-22hr    1387 embryo 22-24hr    968 larva L1    804 larva L2    769 larva L3 12hr old    638 larva L3 puffstage 1-2    446 larva L3 puffstage 3-6    659 larva L3 puffstage 7-9    669 white prepupae new    699 white prepupae 12hr    797 white prepupae 24hr    1041 pupae 2d postWPP    593 pupae 3d postWPP    265 pupae 4d postWPP    263 adult male 01day    353 adult male 05day    422 adult male 30day    475 adult female 01day    1273 adult female 05day    1830 adult female 30day    2002 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0030631 expression level Developmental Stage   Expression Level embryo 00-02hr    3761 embryo 02-04hr    5417 embryo 04-06hr    4007 embryo 06-08hr    2909 embryo 08-10hr    2477 embryo 10-12hr    1831 embryo 12-14hr    1284 embryo 14-16hr    1602 embryo 16-18hr    1138 embryo 18-20hr    628 embryo 20-22hr    1387 embryo 22-24hr    968 larva L1    804 larva L2    769 larva L3 12hr old    638 larva L3 puffstage 1-2    446 larva L3 puffstage 3-6    659 larva L3 puffstage 7-9    669 white prepupae new    699 white prepupae 12hr    797 white prepupae 24hr    1041 pupae 2d postWPP    593 pupae 3d postWPP    265 pupae 4d postWPP    263 adult male 01day    353 adult male 05day    422 adult male 30day    475 adult female 01day    1273 adult female 05day    1830 adult female 30day    2002 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3761) embryo 02-04hr  (5417) embryo 04-06hr  (4007) embryo 06-08hr  (2909) embryo 08-10hr  (2477) embryo 10-12hr  (1831) embryo 12-14hr  (1284) embryo 14-16hr  (1602) embryo 16-18hr  (1138) embryo 18-20hr  (628) embryo 20-22hr  (1387) embryo 22-24hr  (968) larva L1  (804) larva L2  (769) larva L3 12hr old  (638) larva L3 puffstage 1-2  (446) larva L3 puffstage 3-6  (659) larva L3 puffstage 7-9  (669) white prepupae new  (699) white prepupae 12hr  (797) white prepupae 24hr  (1041) pupae 2d postWPP  (593) pupae 3d postWPP  (265) pupae 4d postWPP  (263) adult male 01day  (353) adult male 05day  (422) adult male 30day  (475) adult female 01day  (1273) adult female 05day  (1830) adult female 30day  (2002) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3761) embryo 02-04hr  (5417) embryo 04-06hr  (4007) embryo 06-08hr  (2909) embryo 08-10hr  (2477) embryo 10-12hr  1831 embryo 12-14hr    1284 embryo 14-16hr  1602 embryo 16-18hr    1138 embryo 18-20hr    628 embryo 20-22hr    1387 embryo 22-24hr    968 larva L1    804 larva L2    769 larva L3 12hr old    638 larva L3 puffstage 1-2    446 larva L3 puffstage 3-6    659 larva L3 puffstage 7-9    669 white prepupae new    699 white prepupae 12hr    797 white prepupae 24hr    1041 pupae 2d postWPP    593 pupae 3d postWPP    265 pupae 4d postWPP    263 adult male 01day    353 adult male 05day    422 adult male 30day    475 adult female 01day    1273 adult female 05day  1830 adult female 30day  2002 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3761 embryo 02-04hr    5417 embryo 04-06hr    4007 embryo 06-08hr    2909 embryo 08-10hr    2477 embryo 10-12hr    1831 embryo 12-14hr    1284 embryo 14-16hr    1602 embryo 16-18hr    1138 embryo 18-20hr    628 embryo 20-22hr    1387 embryo 22-24hr    968 larva L1    804 larva L2    769 larva L3 12hr old    638 larva L3 puffstage 1-2    446 larva L3 puffstage 3-6    659 larva L3 puffstage 7-9    669 white prepupae new    699 white prepupae 12hr    797 white prepupae 24hr    1041 pupae 2d postWPP    593 pupae 3d postWPP    265 pupae 4d postWPP    263 adult male 01day    353 adult male 05day    422 adult male 30day    475 adult female 01day    1273 adult female 05day    1830 adult female 30day    2002 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3761 embryo 02-04hr    5417 embryo 04-06hr    4007 embryo 06-08hr    2909 embryo 08-10hr    2477 embryo 10-12hr    1831 embryo 12-14hr    1284 embryo 14-16hr    1602 embryo 16-18hr    1138 embryo 18-20hr    628 embryo 20-22hr    1387 embryo 22-24hr    968 larva L1    804 larva L2    769 larva L3 12hr old    638 larva L3 puffstage 1-2    446 larva L3 puffstage 3-6    659 larva L3 puffstage 7-9    669 white prepupae new    699 white prepupae 12hr    797 white prepupae 24hr    1041 pupae 2d postWPP    593 pupae 3d postWPP    265 pupae 4d postWPP    263 adult male 01day    353 adult male 05day    422 adult male 30day    475 adult female 01day    1273 adult female 05day    1830 adult female 30day    2002 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0030631    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0030631 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0030631 expression level Tissue   Expression Level Larval Central Nervous System    155.375 Larval Midgut    37.2 Larval Hindgut    49.8 Larval Malpighian Tubules    36.9 Larval Fat Body    20.8 Larval Salivary Gland    60 Larval Trachea    78.3 Larval Carcass    61.35 Adult Head    36.5 Adult Eye    39.525 Adult Brain    71.3 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    39.3 Adult Midgut    37.8 Adult Hindgut    37.8 Adult Malpighian Tubules    39.9 Adult Fat Body    43.1 Adult Salivary Gland    30.1 Adult Heart    43.65 Adult VirginFemale Spermatheca    48.3 Adult InseminatedFemale Spermatheca    50.5 Adult Ovary    148.4 Adult Testis    16.1 Adult Male Accessory Gland    73.2 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    155.375 Larval Midgut    37.2 Larval Hindgut    49.8 Larval Malpighian Tubules    36.9 Larval Fat Body    20.8 Larval Salivary Gland    60 Larval Trachea    78.3 Larval Carcass    61.35 Adult Head    36.5 Adult Eye    39.525 Adult Brain    71.3 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    39.3 Adult Midgut    37.8 Adult Hindgut    37.8 Adult Malpighian Tubules    39.9 Adult Fat Body    43.1 Adult Salivary Gland    30.1 Adult Heart    43.65 Adult VirginFemale Spermatheca    48.3 Adult InseminatedFemale Spermatheca    50.5 Adult Ovary    148.4 Adult Testis    16.1 Adult Male Accessory Gland    73.2 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    155.375 Larval Midgut    37.2 Larval Hindgut    49.8 Larval Malpighian Tubules    36.9 Larval Fat Body    20.8 Larval Salivary Gland    60 Larval Trachea    78.3 Larval Carcass    61.35 Adult Head    36.5 Adult Eye    39.525 Adult Brain    71.3 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    39.3 Adult Midgut    37.8 Adult Hindgut    37.8 Adult Malpighian Tubules    39.9 Adult Fat Body    43.1 Adult Salivary Gland    30.1 Adult Heart    43.65 Adult VirginFemale Spermatheca    48.3 Adult InseminatedFemale Spermatheca    50.5 Adult Ovary    148.4 Adult Testis    16.1 Adult Male Accessory Gland    73.2 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    155.375 Larval Midgut    37.2 Larval Hindgut    49.8 Larval Malpighian Tubules    36.9 Larval Fat Body    20.8 Larval Salivary Gland    60 Larval Trachea    78.3 Larval Carcass    61.35 Adult Head    36.5 Adult Eye    39.525 Adult Brain    71.3 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    39.3 Adult Midgut    37.8 Adult Hindgut    37.8 Adult Malpighian Tubules    39.9 Adult Fat Body    43.1 Adult Salivary Gland    30.1 Adult Heart    43.65 Adult VirginFemale Spermatheca    48.3 Adult InseminatedFemale Spermatheca    50.5 Adult Ovary    148.4 Adult Testis    16.1 Adult Male Accessory Gland    73.2 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0030631 expression level Tissue   Expression Level Larval Central Nervous System    155.375 Larval Midgut    37.2 Larval Hindgut    49.8 Larval Malpighian Tubules    36.9 Larval Fat Body    20.8 Larval Salivary Gland    60 Larval Trachea    78.3 Larval Carcass    61.35 Adult Head    36.5 Adult Eye    39.525 Adult Brain    71.3 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    39.3 Adult Midgut    37.8 Adult Hindgut    37.8 Adult Malpighian Tubules    39.9 Adult Fat Body    43.1 Adult Salivary Gland    30.1 Adult Heart    43.65 Adult VirginFemale Spermatheca    48.3 Adult InseminatedFemale Spermatheca    50.5 Adult Ovary    148.4 Adult Testis    16.1 Adult Male Accessory Gland    73.2 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    155.375 Larval Midgut    37.2 Larval Hindgut    49.8 Larval Malpighian Tubules    36.9 Larval Fat Body    20.8 Larval Salivary Gland    60 Larval Trachea    78.3 Larval Carcass    61.35 Adult Head    36.5 Adult Eye    39.525 Adult Brain    71.3 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    39.3 Adult Midgut    37.8 Adult Hindgut    37.8 Adult Malpighian Tubules    39.9 Adult Fat Body    43.1 Adult Salivary Gland    30.1 Adult Heart    43.65 Adult VirginFemale Spermatheca    48.3 Adult InseminatedFemale Spermatheca    50.5 Adult Ovary    148.4 Adult Testis    16.1 Adult Male Accessory Gland    73.2 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    155.375 Larval Midgut    37.2 Larval Hindgut    49.8 Larval Malpighian Tubules    36.9 Larval Fat Body    20.8 Larval Salivary Gland    60 Larval Trachea    78.3 Larval Carcass    61.35 Adult Head    36.5 Adult Eye    39.525 Adult Brain    71.3 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    39.3 Adult Midgut    37.8 Adult Hindgut    37.8 Adult Malpighian Tubules    39.9 Adult Fat Body    43.1 Adult Salivary Gland    30.1 Adult Heart    43.65 Adult VirginFemale Spermatheca    48.3 Adult InseminatedFemale Spermatheca    50.5 Adult Ovary    148.4 Adult Testis    16.1 Adult Male Accessory Gland    73.2 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    155.375 Larval Midgut    37.2 Larval Hindgut    49.8 Larval Malpighian Tubules    36.9 Larval Fat Body    20.8 Larval Salivary Gland    60 Larval Trachea    78.3 Larval Carcass    61.35 Adult Head    36.5 Adult Eye    39.525 Adult Brain    71.3 Adult Thoracic-Abdominal Ganglion    48 Adult Crop    39.3 Adult Midgut    37.8 Adult Hindgut    37.8 Adult Malpighian Tubules    39.9 Adult Fat Body    43.1 Adult Salivary Gland    30.1 Adult Heart    43.65 Adult VirginFemale Spermatheca    48.3 Adult InseminatedFemale Spermatheca    50.5 Adult Ovary    148.4 Adult Testis    16.1 Adult Male Accessory Gland    73.2 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass no informative data FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    36.5   NA  Eye    39.525   NA  Brain    71.3   155.375  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    48   NA  Crop    39.3   37.2  Midgut    37.8   49.8  Hindgut    37.8   36.9  Malpighian Tubules    39.9   20.8  Fat Body    43.1   60  Salivary Gland    30.1   NA  Heart    43.65   78.3  Trachea    NA   NA  VirginFemale Spermatheca    48.3   NA  InseminatedFemale Spermatheca    50.5   NA  Ovary    148.4   NA  Testis    16.1   NA  Male Accessory Gland    73.2   61.35  Carcass    no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_17
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030631 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6227-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | pupal stage, with Scer\GAL4pnr-MD237 CG6227GD11867 viable CG6227EY13571 Sterility Allele fertile CG6227EY13571 Phenotype manifest in Allele
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of CG6227 Class Mutagen Stocks Known lesion CG6227d08806 P-element activity 2 -- CG6227EY13571 P-element activity 1 -- CG6227GG01581 0 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG6227 Class Mutagen Stocks Known lesion CG6227GD11867 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG6227KK108174 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD11867} NA P{KK108174} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}CG6227EY13571 NA P{Mae-UAS.6.11}CG6227GG01581 NA P{XP}CG6227d08806 NA
Gene Ontology: Function, Process & Cellular Component ( 8 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
regulation of alternative nuclear mRNA splicing, via spliceosome inferred from mutant phenotype (Park et al., 2004)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 7 terms )
Molecular Function
CV term Evidence References
ATP binding inferred from electronic annotation with InterPro:IPR000629, InterPro:IPR001650, InterPro:IPR011545 (FlyBase Curators et al., 2004-) ATP-dependent RNA helicase activity inferred from sequence or structural similarity with Saccharomyces PRP5 (Lasko, 2000) mRNA binding inferred from sequence or structural similarity with Saccharomyces PRP5 (FlyBase, 1992-) RNA helicase activity inferred from sequence or structural similarity with NCBI:NP_009796 (Mount and Salz, 2000)
Biological Process
CV term Evidence References
nuclear mRNA splicing, via spliceosome inferred from sequence or structural similarity with NCBI:NP_009796 AND inferred from sequence or structural similarity with Saccharomyces PRP5 (Mount and Salz, 2000)
Cellular Component
CV term Evidence References
nucleus inferred by curator from GO:0000381 (Park et al., 2004) spliceosomal complex inferred from sequence or structural similarity with Saccharomyces PRP5 (Mount and Salz, 2000)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG6227 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 58819 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0030631 DroID - A comprehensive database of gene and protein interactions. • FBgn0030631 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32464
Orthologs
Genome-wide drosophilid orthologs	Dana\GF21236 Dere\GG17877 Dgri\GH17577 Dmoj\GI15175 Dper\GL14575 Dpse\GA19457 Dsec\GM20179 Dsim\GD17208 Dvir\GJ17053 Dwil\GK20023 Dyak\GE17181
Curated drosophilid orthologs	Dmon\Prp5 (Kankare et al., 2010) Dpse\GA19457
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL013985-PA Aedes aegypti (mosquito) AGAP010656-PA Anopheles gambiae (mosquito) XP_001122722.1 Apis mellifera (honey bee) XP_001948746.1 Acyrthosiphon pisum (pea aphid) At1g20920.1 Arabidopsis thaliana (wall cress) 645 Batrachochytrium dendrobatidis (chytrid fungus) 276047 Branchiostoma floridae (lancelet) BGIBMGA008914-PA Bombyx mori (silk worm) ENSBTAP00000028682 Bos taurus (bovine) CAL0005725 Candida albicans (a form of yeast) CN14118 Caenorhabditis brenneri (small nematode) CBP32584 Caenorhabditis briggsae (nematode) CE27427 Caenorhabditis elegans (worm) ENSCAFP00000001491 Canis familiaris (dog) CAGL0K07029g Candida glabrata (haploid yeast) Chro.80099 Cryptosporidium hominis (obligate parasite) ENSCINP00000013980 Ciona intestinalis (sea squirt) JA00648 Caenorhabditis japonica (nematode) CMR433C Cyanidioschyzon merolae (red alga) cn02378 Cryptococcus neoformans (yeast-like fungus) cgd8_800 Cryptosporidium parvum (protozoan parasite) CPIJ005545 Culex pipens (mosquito) ENSCPOP00000010213 Cavia porcellus (guinea pig) 118630 Chlamidomonas reinhardtii (green alga) RP29510 Caenorhabditis remanei (nematode) ENSCSAVP00000003961 Ciona savignyi (sedentary tunicate) 167508 Capitella spl (polychaete worm) DDB0191329 Dictyostelium discoideum (amoeba) DEHA2F04466g Debaryomyces Hansenii (yeast) 302036 Daphnia pulex (daphnia) ENSDARP00000065642 Danio rerio (zebra fish) ENSECAP00000016183 Equus caballus (horse) XP_650493 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000000220 Gymnopilus aculeatus (mushroom) ENSGALP00000010325 Gallus gallus (chicken) 187002 Hypsipyla robusta (cedar shoot borer) ENSP00000346236 Homo sapiens (human) ISCW010217-PA Ixodes scapularis (deer tick) KLLA0F10505g Kluyveromyces lactis (yeast) 130484 Lottia gigantea (owl limpet) LmjF08.0080 Leishmania major (virus) ENSMMUP00000034116 Macaca mulatta (rhesus monkey) ENSMUSP00000089179 Mus musculus (house mouse) 164776 Nematostella vectensis (starlet anemone) XP_001603634.1 Nasonia vitripennis (wasp) ENSOANP00000002927 Ornithorynchus anatinus (platypus) ENSORLP00000001104 Oryzias latipes (japanese killifish) LOC_Os08g06344.1 Oryza sativa (asian rice) 17 Ostreococcus tauri (green alga) PFE0430w Plasmodium falciparum (protozoal parasite) PHUM003165-PA Pediculus humanus (human body louse) 149955 Physcomitrella patens (moss) ENSPPYP00000017658 Pongo pygmaeus (orangutan) 52574 Phytophthora ramorum (sudden oak death pathogen) 108980 Phytophthora sojae (root rot pathogen) 411630 Populus trichocarpa (black cottonwood) ENSPTRP00000029506 Pan troglodytes (chimpanzee) PVX_097995 Plasmodium vivax (protozoal parasite) ENSRNOP00000030772 Rattus norvegicus (norway rat) 4836525 Sorghum bicolor (sorghum) YBR237W Saccharomyces cerevisiae (budding yeast) Smp_174210.3 Schistosoma mansoni (trematode parasite) SPCC10H11.01 Schizosaccharomyces pombe (fission yeast) XP_784902.2 Strongylocentrotus purpuratus (purple sea urchin) 30653 Trichoplax adhaerens (metazoa) TA05085 Theileria annulata (apicomplexan parasite) XP_973126.2 Tribolium castaneum (red flour beetle) Tc00.1047053507811.30 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000019191 Tetraodon nigroviridis (green spotted pufferfish) TP03_0532 Theileria parva (parasitic protozoan) ENSTRUP00000022320 Takifugu rubripes (pufferfish Takifugu) 3679.m00072 Tetrahymena thermophila (ciliate protozoa) ENSXETP00000022851 Xenopus tropicalis (frog) YALI0C05368g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB17199 NV12932 LH17090 ISCW010217 FBgn0234660 FBgn0222020 FBgn0204230 FBgn0188771 FBgn0175062 JGI_V11_302036 FBgn0079453 FBgn0152180 FBgn0137925 FBgn0125047 FBgn0110097 FBgn0098238 CPIJ005545 BGIBMGA008914 ACYPI006412 GB15485 AGAP010656 AAEL013985 PHUM190120 GLEAN_05373
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	19300 w1118 P{XP}CG6227d08806/FM7c 20884 y1 P{EPgy2}CG6227EY13571 w67c23
Harvard	- P{XP}CG6227d08806
VDRC	v40351 w1118; P{GD11867}v40351 v40352 w1118; P{GD11867}v40352
Genomic Clones ( 1 )
	BACR48D17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 140 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD21880 LD41277
Other clones	DPiM_LD41277
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GM29221 LD14848 LD19151 LD19152 LD27063 LD29248 LD29659 LD29886 LD35355 LD36854 LD41980 LD43806 LD47047 RE05716 RE06191 RE15031 RE20603 RE20967 RE21084 RE53702 RE58087 RE69249 RE73202 SD06696 SD27172 UT01265
Other clones	81624 82401 175888 214277.39 CK01.10A.G12 CK01.12A.C2 CK01.27B.C11 CK01.39C.B6 CK01.109A.C3 EK023612 EK033239 EK099210 EK147809 EK174431 EK214962 EK280462 EP15145 LD23901 LD30682 LD47725 RP003015895 RP003029619 RP003032971 RP003039730 RP003047818 RP003056929 RP003057967 RP003063069 RP003077952 RP003090346 RP003093492 RP003095907 RP003098531 RP003100394 RP003103799 RP003104815 RP003118633 RP003128289 RP003132177 RP003137566 RP003141411 RP003159235 RP003166216 RP003169511 RP003187792 RP003199293 RP003200419 RP003208692 RP003209161 RP003215366 RP003235169 RP003247128 RP003255140 RP003263186 RP003270834 RP003270897 RP003274844 RP003280057 RP003282809 RP003289795 RP003298098 RP003322132 RP003324456 RP003326082 RP003335146 RP003336431 RP003341895 RP003356691 RP003359974 RP003380358 RP003401447 RP003412832 RP003415107 RP003419515 RP003431728 RP003434121 RP003436940 RP003443495 RP003452388 RP003453472 RP003488291 RP003502424 RP003503486 RP003511625 RP003517349 RP003525340 RP003541929 RP003542143 RP003548103 RP003553338 RP003555358 RP003566495 RP003574805 RP003577714 RP003585130 RP003608694 RP003621483 RP003624037 RP003631177 RP003633240 RP003637509 RP003644340 RP003645207 RP003649096 RP003659157 RP003667680 RP003678825 UT01009 UT01288 UT01703 UT01827
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0030631 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32464
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132792 RefSeq (Proteins) • NP_573020 DDBJ / EMBL / GenBank • AA940614 AAF48446 AAL13744 AAV36975 AW942616 AY058515 BT016090 CL943583 CZ476420 Entrez Gene - A searchable database of RefSeq genes. • 32464 UniProtKB/TrEMBL • Q9VXW2 Q95TU3
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • RNA helicase, ATP-dependent, DEAD-box, conserved site (IPR000629) Helicase, C-terminal (IPR001650) DNA/RNA helicase, DEAD/DEAH box type, N-terminal (IPR011545) DEAD-like helicase (IPR014001) RNA helicase, DEAD-box type, Q motif (IPR014014)
Linkouts
	BioGRID - A database of protein and genetic interactions • 58819 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0030631 DroID - A comprehensive database of gene and protein interactions. • FBgn0030631 DRSC - Results from RNAi screens. • FBgn0030631 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030631 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6227-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0030631 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32464 InParanoid A subset of ortholog calls from InParanoid. • AAEL013985-PA Aedes aegypti (mosquito) AGAP010656-PA Anopheles gambiae (mosquito) XP_001122722.1 Apis mellifera (honey bee) XP_001948746.1 Acyrthosiphon pisum (pea aphid) At1g20920.1 Arabidopsis thaliana (wall cress) 645 Batrachochytrium dendrobatidis (chytrid fungus) 276047 Branchiostoma floridae (lancelet) BGIBMGA008914-PA Bombyx mori (silk worm) ENSBTAP00000028682 Bos taurus (bovine) CAL0005725 Candida albicans (a form of yeast) CN14118 Caenorhabditis brenneri (small nematode) CBP32584 Caenorhabditis briggsae (nematode) CE27427 Caenorhabditis elegans (worm) ENSCAFP00000001491 Canis familiaris (dog) CAGL0K07029g Candida glabrata (haploid yeast) Chro.80099 Cryptosporidium hominis (obligate parasite) ENSCINP00000013980 Ciona intestinalis (sea squirt) JA00648 Caenorhabditis japonica (nematode) CMR433C Cyanidioschyzon merolae (red alga) cn02378 Cryptococcus neoformans (yeast-like fungus) cgd8_800 Cryptosporidium parvum (protozoan parasite) CPIJ005545 Culex pipens (mosquito) ENSCPOP00000010213 Cavia porcellus (guinea pig) 118630 Chlamidomonas reinhardtii (green alga) RP29510 Caenorhabditis remanei (nematode) ENSCSAVP00000003961 Ciona savignyi (sedentary tunicate) 167508 Capitella spl (polychaete worm) DDB0191329 Dictyostelium discoideum (amoeba) DEHA2F04466g Debaryomyces Hansenii (yeast) 302036 Daphnia pulex (daphnia) ENSDARP00000065642 Danio rerio (zebra fish) ENSECAP00000016183 Equus caballus (horse) XP_650493 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000000220 Gymnopilus aculeatus (mushroom) ENSGALP00000010325 Gallus gallus (chicken) 187002 Hypsipyla robusta (cedar shoot borer) ENSP00000346236 Homo sapiens (human) ISCW010217-PA Ixodes scapularis (deer tick) KLLA0F10505g Kluyveromyces lactis (yeast) 130484 Lottia gigantea (owl limpet) LmjF08.0080 Leishmania major (virus) ENSMMUP00000034116 Macaca mulatta (rhesus monkey) ENSMUSP00000089179 Mus musculus (house mouse) 164776 Nematostella vectensis (starlet anemone) XP_001603634.1 Nasonia vitripennis (wasp) ENSOANP00000002927 Ornithorynchus anatinus (platypus) ENSORLP00000001104 Oryzias latipes (japanese killifish) LOC_Os08g06344.1 Oryza sativa (asian rice) 17 Ostreococcus tauri (green alga) PFE0430w Plasmodium falciparum (protozoal parasite) PHUM003165-PA Pediculus humanus (human body louse) 149955 Physcomitrella patens (moss) ENSPPYP00000017658 Pongo pygmaeus (orangutan) 52574 Phytophthora ramorum (sudden oak death pathogen) 108980 Phytophthora sojae (root rot pathogen) 411630 Populus trichocarpa (black cottonwood) ENSPTRP00000029506 Pan troglodytes (chimpanzee) PVX_097995 Plasmodium vivax (protozoal parasite) ENSRNOP00000030772 Rattus norvegicus (norway rat) 4836525 Sorghum bicolor (sorghum) YBR237W Saccharomyces cerevisiae (budding yeast) Smp_174210.3 Schistosoma mansoni (trematode parasite) SPCC10H11.01 Schizosaccharomyces pombe (fission yeast) XP_784902.2 Strongylocentrotus purpuratus (purple sea urchin) 30653 Trichoplax adhaerens (metazoa) TA05085 Theileria annulata (apicomplexan parasite) XP_973126.2 Tribolium castaneum (red flour beetle) Tc00.1047053507811.30 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000019191 Tetraodon nigroviridis (green spotted pufferfish) TP03_0532 Theileria parva (parasitic protozoan) ENSTRUP00000022320 Takifugu rubripes (pufferfish Takifugu) 3679.m00072 Tetrahymena thermophila (ciliate protozoa) ENSXETP00000022851 Xenopus tropicalis (frog) YALI0C05368g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32464 modMine - Data generated by the modENCODE project. • FBgn0030631 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB17199 NV12932 LH17090 ISCW010217 FBgn0234660 FBgn0222020 FBgn0204230 FBgn0188771 FBgn0175062 JGI_V11_302036 FBgn0079453 FBgn0152180 FBgn0137925 FBgn0125047 FBgn0110097 FBgn0098238 CPIJ005545 BGIBMGA008914 ACYPI006412 GB15485 AGAP010656 AAEL013985 PHUM190120 GLEAN_05373
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	cg6227 (Lasko, 2000) CG6227 (Keleman et al., 2009.8.5, Svetec et al., 2009) DmRH29 (Boudet et al., 2001) Prp5 (Park et al., 2004)
Name Synonym
Secondary FlyBase IDs
References ( 22 )
Generate a list of	All references relating to this gene ( 22 )
List References by type	Research paper  ( 7 ) Supplementary material  ( 2 ) Personal communication to FlyBase  ( 5 ) FlyBase analysis  ( 2 ) Computer file  ( 3 ) Automatic genome annotation  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 1 )
	Kankare et al., 2010, BMC Ecol. 10(1): 3 Changes in gene expression linked with adult reproductive diapause in a northern malt fly species: a candidate gene microarray study. [FBrf0210028] Show all research papers ...