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Gene Dmel\CG6340

General Information
Symbol	Dmel\CG6340	Species	D. melanogaster
Name		Annotation symbol	CG6340
Feature type	protein_coding_gene	FlyBase ID	FBgn0030648
Gene Model Status	Current	Stock availability	9 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	13C5-13C5	Sequence location	X:15,376,410..15,380,645 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG6340 (FBgn0030648). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 11 alleles are reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 06-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression in all larval and adult organs/tissues ranges from low to undetected. Expression at high levels in the following post-embryonic organs or tissues: adult brain. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Gene sequence location is X:15376410..15380645.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10	Clones IP12152 IP11126 GM13211 IP11026 HL03408 IP12052 Transcripts CG6340-RE CG6340-RF References Knowles-Barley, 2011.8.24, BrainTrap expression curation. Polypeptides CG6340-PE CG6340-PF
FB2012_01	Sequence features HFA19987 BKN41817 BKN40783 BKN40784
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 13C5-13C5   Limits computationally determined from genome sequence between P{EP}Ahcy13EP1007 and P{EP}CG6340EP1109&P{EP}l(1)G0168EP491
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG6340 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.43 Gene model reviewed during 5.42
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG6340-RA FBtr0074040  NM_167448   1343   179 CG6340-RB FBtr0074039  NM_132806   1811   513 CG6340-RE FBtr0310060     1828   51 CG6340-RF FBtr0310061     2174   107
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG6340-PA   FBpp0073857   20.2   179   9.67     NP_727862   AAF48465 CG6340-PB   FBpp0073856   56.7   513   11.27     NP_573034   AAF48464 CG6340-PE   FBpp0301761   5.9   51   6.49       CG6340-PF   FBpp0301762   12.5   107   10.52
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA697425   AA697883   AA698212   AA698428   AA736078   AE014298 AAF48464   AE014298 AAF48465   AI293037   AI386986   AI387104   AI405595   AI541832   AI542160   AQ025388   AW940985   AW944513   AY051612 AAK93036   AY061611 AAL29159   AY128500 AAM75093   AZ877677   BF506190   BG641126   BI364054   BI371030   BI604879   BT120315   BZ748891   CK658905   CL868567   CO186137   CO280233   CO305960   CO313766   CO322375   CO323720   CO339331   CZ473033   CZ482756   EC050993   EC074707   EC078255   EC210681   EC214056   EC217229   EC217310   EC223510   EC258906   EL876414   EL877605   EL877722   EL877734   EL877864   EL881221   EL881222   EL881336   EL881337   EL882275   EL882384   EL882498   EL882624   EL882625   GH749130   GH754466   GH759134   GH801676   GH801951   GH849234   GH852682   GH861069   GH879984   GH890083
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8IR33 Q8MQL9 Q9VXU3 Q9VXU4
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0030648    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0030648 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 06-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0030648 expression level Developmental Stage   Expression Level embryo 00-02hr    3357 embryo 02-04hr    1835 embryo 04-06hr    3997 embryo 06-08hr    4037 embryo 08-10hr    2917 embryo 10-12hr    2954 embryo 12-14hr    1769 embryo 14-16hr    1770 embryo 16-18hr    1225 embryo 18-20hr    1412 embryo 20-22hr    1363 embryo 22-24hr    1166 larva L1    1780 larva L2    977 larva L3 12hr old    825 larva L3 puffstage 1-2    985 larva L3 puffstage 3-6    1608 larva L3 puffstage 7-9    1727 white prepupae new    1710 white prepupae 12hr    2085 white prepupae 24hr    2396 pupae 2d postWPP    1886 pupae 3d postWPP    1224 pupae 4d postWPP    1340 adult male 01day    1333 adult male 05day    1840 adult male 30day    1794 adult female 01day    2082 adult female 05day    2345 adult female 30day    2499 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3357) embryo 02-04hr  (1835) embryo 04-06hr  (3997) embryo 06-08hr  (4037) embryo 08-10hr  (2917) embryo 10-12hr  (2954) embryo 12-14hr  (1769) embryo 14-16hr  (1770) embryo 16-18hr  (1225) embryo 18-20hr  (1412) embryo 20-22hr  (1363) embryo 22-24hr  (1166) larva L1  (1780) larva L2  (977) larva L3 12hr old  (825) larva L3 puffstage 1-2  (985) larva L3 puffstage 3-6  (1608) larva L3 puffstage 7-9  (1727) white prepupae new  (1710) white prepupae 12hr  (2085) white prepupae 24hr  (2396) pupae 2d postWPP  (1886) pupae 3d postWPP  (1224) pupae 4d postWPP  (1340) adult male 01day  (1333) adult male 05day  (1840) adult male 30day  (1794) adult female 01day  (2082) adult female 05day  (2345) adult female 30day  (2499) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3357) embryo 02-04hr  (1835) embryo 04-06hr  (3997) embryo 06-08hr  (4037) embryo 08-10hr  (2917) embryo 10-12hr  (2954) embryo 12-14hr  (1769) embryo 14-16hr  (1770) embryo 16-18hr    1225 embryo 18-20hr  1412 embryo 20-22hr    1363 embryo 22-24hr    1166 larva L1  (1780) larva L2    977 larva L3 12hr old    825 larva L3 puffstage 1-2    985 larva L3 puffstage 3-6  (1608) larva L3 puffstage 7-9  (1727) white prepupae new  (1710) white prepupae 12hr  (2085) white prepupae 24hr  (2396) pupae 2d postWPP  (1886) pupae 3d postWPP    1224 pupae 4d postWPP    1340 adult male 01day    1333 adult male 05day  (1840) adult male 30day  (1794) adult female 01day  (2082) adult female 05day  (2345) adult female 30day  (2499) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3357 embryo 02-04hr    1835 embryo 04-06hr    3997 embryo 06-08hr    4037 embryo 08-10hr    2917 embryo 10-12hr    2954 embryo 12-14hr    1769 embryo 14-16hr    1770 embryo 16-18hr    1225 embryo 18-20hr    1412 embryo 20-22hr    1363 embryo 22-24hr    1166 larva L1    1780 larva L2    977 larva L3 12hr old    825 larva L3 puffstage 1-2    985 larva L3 puffstage 3-6    1608 larva L3 puffstage 7-9    1727 white prepupae new    1710 white prepupae 12hr    2085 white prepupae 24hr    2396 pupae 2d postWPP    1886 pupae 3d postWPP    1224 pupae 4d postWPP    1340 adult male 01day    1333 adult male 05day    1840 adult male 30day    1794 adult female 01day    2082 adult female 05day    2345 adult female 30day    2499 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3357 embryo 02-04hr    1835 embryo 04-06hr    3997 embryo 06-08hr    4037 embryo 08-10hr    2917 embryo 10-12hr    2954 embryo 12-14hr    1769 embryo 14-16hr    1770 embryo 16-18hr    1225 embryo 18-20hr    1412 embryo 20-22hr    1363 embryo 22-24hr    1166 larva L1    1780 larva L2    977 larva L3 12hr old    825 larva L3 puffstage 1-2    985 larva L3 puffstage 3-6    1608 larva L3 puffstage 7-9    1727 white prepupae new    1710 white prepupae 12hr    2085 white prepupae 24hr    2396 pupae 2d postWPP    1886 pupae 3d postWPP    1224 pupae 4d postWPP    1340 adult male 01day    1333 adult male 05day    1840 adult male 30day    1794 adult female 01day    2082 adult female 05day    2345 adult female 30day    2499 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0030648 expression level Developmental Stage   Expression Level embryo 00-02hr    3357 embryo 02-04hr    1835 embryo 04-06hr    3997 embryo 06-08hr    4037 embryo 08-10hr    2917 embryo 10-12hr    2954 embryo 12-14hr    1769 embryo 14-16hr    1770 embryo 16-18hr    1225 embryo 18-20hr    1412 embryo 20-22hr    1363 embryo 22-24hr    1166 larva L1    1780 larva L2    977 larva L3 12hr old    825 larva L3 puffstage 1-2    985 larva L3 puffstage 3-6    1608 larva L3 puffstage 7-9    1727 white prepupae new    1710 white prepupae 12hr    2085 white prepupae 24hr    2396 pupae 2d postWPP    1886 pupae 3d postWPP    1224 pupae 4d postWPP    1340 adult male 01day    1333 adult male 05day    1840 adult male 30day    1794 adult female 01day    2082 adult female 05day    2345 adult female 30day    2499 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3357) embryo 02-04hr  (1835) embryo 04-06hr  (3997) embryo 06-08hr  (4037) embryo 08-10hr  (2917) embryo 10-12hr  (2954) embryo 12-14hr  (1769) embryo 14-16hr  (1770) embryo 16-18hr  (1225) embryo 18-20hr  (1412) embryo 20-22hr  (1363) embryo 22-24hr  (1166) larva L1  (1780) larva L2  (977) larva L3 12hr old  (825) larva L3 puffstage 1-2  (985) larva L3 puffstage 3-6  (1608) larva L3 puffstage 7-9  (1727) white prepupae new  (1710) white prepupae 12hr  (2085) white prepupae 24hr  (2396) pupae 2d postWPP  (1886) pupae 3d postWPP  (1224) pupae 4d postWPP  (1340) adult male 01day  (1333) adult male 05day  (1840) adult male 30day  (1794) adult female 01day  (2082) adult female 05day  (2345) adult female 30day  (2499) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3357) embryo 02-04hr  1835 embryo 04-06hr  (3997) embryo 06-08hr  (4037) embryo 08-10hr  (2917) embryo 10-12hr  (2954) embryo 12-14hr  1769 embryo 14-16hr  1770 embryo 16-18hr    1225 embryo 18-20hr  1412 embryo 20-22hr    1363 embryo 22-24hr    1166 larva L1  1780 larva L2    977 larva L3 12hr old    825 larva L3 puffstage 1-2    985 larva L3 puffstage 3-6  1608 larva L3 puffstage 7-9  1727 white prepupae new  1710 white prepupae 12hr  2085 white prepupae 24hr  2396 pupae 2d postWPP  1886 pupae 3d postWPP    1224 pupae 4d postWPP    1340 adult male 01day    1333 adult male 05day  1840 adult male 30day  1794 adult female 01day  2082 adult female 05day  2345 adult female 30day  (2499) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3357 embryo 02-04hr    1835 embryo 04-06hr    3997 embryo 06-08hr    4037 embryo 08-10hr    2917 embryo 10-12hr    2954 embryo 12-14hr    1769 embryo 14-16hr    1770 embryo 16-18hr    1225 embryo 18-20hr    1412 embryo 20-22hr    1363 embryo 22-24hr    1166 larva L1    1780 larva L2    977 larva L3 12hr old    825 larva L3 puffstage 1-2    985 larva L3 puffstage 3-6    1608 larva L3 puffstage 7-9    1727 white prepupae new    1710 white prepupae 12hr    2085 white prepupae 24hr    2396 pupae 2d postWPP    1886 pupae 3d postWPP    1224 pupae 4d postWPP    1340 adult male 01day    1333 adult male 05day    1840 adult male 30day    1794 adult female 01day    2082 adult female 05day    2345 adult female 30day    2499 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3357 embryo 02-04hr    1835 embryo 04-06hr    3997 embryo 06-08hr    4037 embryo 08-10hr    2917 embryo 10-12hr    2954 embryo 12-14hr    1769 embryo 14-16hr    1770 embryo 16-18hr    1225 embryo 18-20hr    1412 embryo 20-22hr    1363 embryo 22-24hr    1166 larva L1    1780 larva L2    977 larva L3 12hr old    825 larva L3 puffstage 1-2    985 larva L3 puffstage 3-6    1608 larva L3 puffstage 7-9    1727 white prepupae new    1710 white prepupae 12hr    2085 white prepupae 24hr    2396 pupae 2d postWPP    1886 pupae 3d postWPP    1224 pupae 4d postWPP    1340 adult male 01day    1333 adult male 05day    1840 adult male 30day    1794 adult female 01day    2082 adult female 05day    2345 adult female 30day    2499 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0030648    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0030648 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression in all larval and adult organs/tissues ranges from low to undetected. Expression at high levels in the following post-embryonic organs or tissues: adult brain. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Heatmap Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea no informative data Larval Carcass no informative data Adult Head no informative data Adult Eye no informative data Adult Brain no informative data Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary no informative data Adult Testis no informative data Adult Male Accessory Gland no informative data Adult Carcass no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_30
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030648 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6340-RC;CG6340-RB;CG6340-RC;CG6340-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG6340 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG6340EY12474 viable, with Scer\GAL4pnr-MD237 CG6340GD10568 Sterility Allele fertile CG6340EY12474 Phenotype manifest in Allele
Classical Alleles ( 9 )
For All Classical Alleles Show
Allele of CG6340 Class Mutagen Stocks Known lesion CG6340BG01111 P-element activity 1 -- CG6340d02850 P-element activity 1 -- CG6340EY02271 P-element activity 1 -- CG6340EY12474 P-element activity 1 -- CG6340f00274 piggyBac transposase 1 -- CG6340NP1059 1 -- CG6340NP2007 1 -- CG6340CPTI003728 piggyBac transposase 0 Yes CG6340EP1109 P-element activity 0 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG6340 Class Mutagen Stocks Known lesion CG6340GD10568 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG6340KK115145 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Partially disrupted in	Df(1)shtdEPDelta (Tanaka-Matakatsu et al., 2007)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10568} NA P{KK115145} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}CG6340EP1109 NA P{EPgy2}CG6340EY02271 NA P{EPgy2}CG6340EY12474 NA P{XP}CG6340d02850 NA miscellaneous insertions P{GT1}CG6340BG01111 NA PBac{803.P.SVS-0}CG6340CPTI003728 NA PBac{WH}CG6340f00274 NA insertion of enhancer trap binary system P{GawB}CG6340NP1059 No P{GawB}CG6340NP2007 No
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG6340 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 58835 DroID - A comprehensive database of gene and protein interactions. • FBgn0030648 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32482
Orthologs
Genome-wide drosophilid orthologs	Dana\GF21909 Dere\GG17886 Dgri\GH12847 Dmoj\GI14937 Dper\GL13419 Dpse\GA22885 Dsec\GM19575 Dsim\GD17213 Dvir\GJ18966 Dwil\GK19862 Dyak\GE17192
Curated drosophilid orthologs	Dpse\GA19523
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL010165-PA Aedes aegypti (mosquito) AGAP001208-PA Anopheles gambiae (mosquito) XP_001951783.1 Acyrthosiphon pisum (pea aphid) 123838 Branchiostoma floridae (lancelet) BGIBMGA012781-PA Bombyx mori (silk worm) ENSBTAP00000008042 Bos taurus (bovine) CBP26084 Caenorhabditis briggsae (nematode) CE00350 Caenorhabditis elegans (worm) ENSCAFP00000011609 Canis familiaris (dog) ENSCINP00000006417 Ciona intestinalis (sea squirt) JA07972 Caenorhabditis japonica (nematode) ENSCPOP00000001285 Cavia porcellus (guinea pig) RP43225 Caenorhabditis remanei (nematode) 176059 Capitella spl (polychaete worm) ENSDARP00000062365 Danio rerio (zebra fish) ENSECAP00000011793 Equus caballus (horse) ENSGACP00000010836 Gymnopilus aculeatus (mushroom) ENSGALP00000007146 Gallus gallus (chicken) 167096 Hypsipyla robusta (cedar shoot borer) ENSP00000330188 Homo sapiens (human) ISCW015319-PA Ixodes scapularis (deer tick) 233404 Lottia gigantea (owl limpet) ENSMODP00000015363 Monodelphis domestica (gray opossum) ENSMMUP00000005889 Macaca mulatta (rhesus monkey) ENSMUSP00000050563 Mus musculus (house mouse) XP_001602498.1 Nasonia vitripennis (wasp) ENSOANP00000009907 Ornithorynchus anatinus (platypus) ENSORLP00000007556 Oryzias latipes (japanese killifish) PHUM007870-PA Pediculus humanus (human body louse) ENSPPYP00000005776 Pongo pygmaeus (orangutan) ENSPTRP00000009480 Pan troglodytes (chimpanzee) ENSRNOP00000001665 Rattus norvegicus (norway rat) Smp_141140 Schistosoma mansoni (trematode parasite) XP_798233.2 Strongylocentrotus purpuratus (purple sea urchin) 59207 Trichoplax adhaerens (metazoa) ENSTNIP00000018909 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000020553 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000017033 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB19512 NV11864 LH16409 ISCW015319 FBgn0206112 FBgn0244287 FBgn0137688 FBgn0120326 CPIJ010348 BGIBMGA012781 ACYPI007457 GB13724 AGAP001208 AAEL010165 PHUM240560 GLEAN_15801
Stocks & Reagents
Stocks Listed in FlyBase ( 9 )
Bloomington	12455 w1118 P{GT1}CG6340BG01111 15412 y1 w67c23 P{EPgy2}CG6340EY02271 20745 y1 w67c23 P{EPgy2}CG6340EY12474
Harvard	- P{XP}CG6340d02850 - PBac{WH}CG6340f00274
Kyoto	112741 w* P{GawB}CG6340NP2007 / FM7c 103871 y* w* P{GawB}CG6340NP1059 / FM7c
VDRC	v34159 w1118; P{GD10568}v34159 v34160 w1118; P{GD10568}v34160
Genomic Clones ( 2 )
	BACR02B12 BACR36D15 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 55 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH25653 GM13211 RH70372 SD07644
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT08594 GH16110 GH17387 GH17538 GM10950 HL02447 HL03408 HL03954 HL04488 LP16194 RE49090 RE57833 SD08284 SD12380
Other clones	39916 62451 65006 107811 166544 214445.24 CK01.7A.C11 CK01.16B.C6 EC050993 EK016133 EK153441 EK188015 EK191243 EK234024 EK249907 EP01630 IP06336 IP07601 IP07701 IP07712 IP07812 IP11026 IP11126 IP12052 IP12152 IP12252 IP12352 RP003019848 RP003053022 RP003156932 RP003195257 RP003317854 RP003410616 RP003577053 RP003645751 RP003660061 RP003666352
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0030648 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32482
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132806 NM_167448 RefSeq (Proteins) • NP_573034 NP_727862 DDBJ / EMBL / GenBank • AAF48464 AAF48465 AAK93036 AAL29159 AAM75093 AAN09355 AI405595 AI541832 AQ025388 AW940985 AW944513 AY051612 AY061611 AY128500 AZ877677 BI604879 BZ748891 CL868567 CZ473033 CZ482756 Entrez Gene - A searchable database of RefSeq genes. • 32482 UniProtKB/TrEMBL • Q8IR33 Q8MQL9 Q9VXU3 Q9VXU4
Other Crossreferences
Linkouts
	BioGRID - A database of protein and genetic interactions • 58835 DroID - A comprehensive database of gene and protein interactions. • FBgn0030648 DRSC - Results from RNAi screens. • FBgn0030648 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030648 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6340-RC;CG6340-RB;CG6340-RC;CG6340-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0030648 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32482 InParanoid A subset of ortholog calls from InParanoid. • AAEL010165-PA Aedes aegypti (mosquito) AGAP001208-PA Anopheles gambiae (mosquito) XP_001951783.1 Acyrthosiphon pisum (pea aphid) 123838 Branchiostoma floridae (lancelet) BGIBMGA012781-PA Bombyx mori (silk worm) ENSBTAP00000008042 Bos taurus (bovine) CBP26084 Caenorhabditis briggsae (nematode) CE00350 Caenorhabditis elegans (worm) ENSCAFP00000011609 Canis familiaris (dog) ENSCINP00000006417 Ciona intestinalis (sea squirt) JA07972 Caenorhabditis japonica (nematode) ENSCPOP00000001285 Cavia porcellus (guinea pig) RP43225 Caenorhabditis remanei (nematode) 176059 Capitella spl (polychaete worm) ENSDARP00000062365 Danio rerio (zebra fish) ENSECAP00000011793 Equus caballus (horse) ENSGACP00000010836 Gymnopilus aculeatus (mushroom) ENSGALP00000007146 Gallus gallus (chicken) 167096 Hypsipyla robusta (cedar shoot borer) ENSP00000330188 Homo sapiens (human) ISCW015319-PA Ixodes scapularis (deer tick) 233404 Lottia gigantea (owl limpet) ENSMODP00000015363 Monodelphis domestica (gray opossum) ENSMMUP00000005889 Macaca mulatta (rhesus monkey) ENSMUSP00000050563 Mus musculus (house mouse) XP_001602498.1 Nasonia vitripennis (wasp) ENSOANP00000009907 Ornithorynchus anatinus (platypus) ENSORLP00000007556 Oryzias latipes (japanese killifish) PHUM007870-PA Pediculus humanus (human body louse) ENSPPYP00000005776 Pongo pygmaeus (orangutan) ENSPTRP00000009480 Pan troglodytes (chimpanzee) ENSRNOP00000001665 Rattus norvegicus (norway rat) Smp_141140 Schistosoma mansoni (trematode parasite) XP_798233.2 Strongylocentrotus purpuratus (purple sea urchin) 59207 Trichoplax adhaerens (metazoa) ENSTNIP00000018909 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000020553 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000017033 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32482 modMine - Data generated by the modENCODE project. • FBgn0030648 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB19512 NV11864 LH16409 ISCW015319 FBgn0206112 FBgn0244287 FBgn0137688 FBgn0120326 CPIJ010348 BGIBMGA012781 ACYPI007457 GB13724 AGAP001208 AAEL010165 PHUM240560 GLEAN_15801
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG6340 (Maisonhaute et al., 2007, Ogura et al., 2009, Tanaka-Matakatsu et al., 2007, Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
References ( 17 )
Research paper	Ogura et al., 2009, Radiat. Res. 171(1): 1--8 Reduction in Mutation Frequency by Very Low-Dose Gamma Irradiation of Drosophila melanogaster Germ Cells. [FBrf0206576] Maisonhaute et al., 2007, Gene 393(1-2): 116--126 Amplification of the 1731 LTR retrotransposon in Drosophila melanogaster cultured cells: origin of neocopies and impact on the genome. [FBrf0200843] Tanaka-Matakatsu et al., 2007, Dev. Biol. 309(2): 222--235 Mutation of the Apcl homologue shattered disrupts normal eye development by disrupting G1 cell cycle arrest and progression through mitosis. [FBrf0201230] Ward et al., 2002, genesis 34(1-2): 46--50 GAL4 enhancer trap patterns during Drosophila development. [FBrf0152375]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	FlyProt project., 2011.8.8, CPTI protein trap lines available from the Kyoto Stock Center. CPTI protein trap lines available from the Kyoto Stock Center. [FBrf0214588] Knowles-Barley, 2011.8.24, BrainTrap expression curation. BrainTrap expression curation. [FBrf0215202] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. Genomic mapping of Exelixis insertion collection. [FBrf0184340] Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]