Gene Dmel\CG9220

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General Information

Symbol

Dmel\CG9220

Species

D. melanogaster

Name

Annotation symbol

CG9220

Feature type

protein_coding_gene

FlyBase ID

FBgn0030662

Gene Model Status

Current

Stock availability

3 publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

13D4-13E1

Sequence location

X:15,479,322..15,487,567 [-]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG9220 (FBgn0030662). It is a protein_coding_gene from Drosophila melanogaster. It is reported to have molecular function: glucuronosyltransferase activity; acetylglucosaminyltransferase activity. It is reported to be involved in the biological process: chondroitin sulfate biosynthetic process. 3 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Chondroitin N-acetylgalactosaminyltransferase. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 06-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: larval fat body. Gene sequence location is X:15479322..15487567.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

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Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

13D4-13E1

Limits computationally determined from genome sequence between P{EP}CG6340^EP1109&P{EP}l(1)G0168^EP491 and P{EP}EP1489

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG9220 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene model reviewed during 5.50

Low-frequency RNA-Seq exon junction(s) not annotated.

Annotated transcripts do not represent all supported alternative splices within 5' UTR.

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG9220-RC

FBtr0074064

NM_206717

3912

832

CG9220-RD

FBtr0340347

3529

832

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG9220-PC

FBpp0073880

95.8

832

6.95

NP_996440

AAS65341

CG9220-PD

FBpp0309305

95.8

832

6.95

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Chondroitin N-acetylgalactosaminyltransferase (IPR008428)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: larval fat body.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		6
central nervous system, larvae L3		6
central nervous system, pupae P8		3
head, virgin 1-day female		5
head, virgin 4-day female		3
head, virgin 20-day female		3
head, mated 1-day female		2
head, mated 4-day female		2
head, mated 20-day female		3
head, mated 1-day male		5
head, mated 4-day male		5
head, mated 20-day male		7
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		4
digestive system, 4-day adult		5
digestive system, 20-day adult		5
fat body, larvae L3 wandering		4
fat body, white prepupae		4
fat body, pupae P8		4
carcass, larvae L3 wandering		9
carcass, 1-day adult		3
carcass, 4-day adult		4
carcass, 20-day adult		4
ovary, virgin 4-day female		1
ovary, mated 4-day female		1
testis, mated 4-day male		1
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		6
central nervous system, larvae L3		6
central nervous system, pupae P8		3
head, virgin 1-day female		5
head, virgin 4-day female		3
head, virgin 20-day female		3
head, mated 1-day female		2
head, mated 4-day female		2
head, mated 20-day female		3
head, mated 1-day male		5
head, mated 4-day male		5
head, mated 20-day male		7
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		4
digestive system, 4-day adult		5
digestive system, 20-day adult		5
fat body, larvae L3 wandering		4
fat body, white prepupae		4
fat body, pupae P8		4
carcass, larvae L3 wandering		9
carcass, 1-day adult		3
carcass, 4-day adult		4
carcass, 20-day adult		4
ovary, virgin 4-day female		1
ovary, mated 4-day female		1
testis, mated 4-day male		1
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		6
central nervous system, larvae L3		6
central nervous system, pupae P8		3
head, virgin 1-day female		5
head, virgin 4-day female		3
head, virgin 20-day female		3
head, mated 1-day female		2
head, mated 4-day female		2
head, mated 20-day female		3
head, mated 1-day male		5
head, mated 4-day male		5
head, mated 20-day male		7
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		4
digestive system, 4-day adult		5
digestive system, 20-day adult		5
fat body, larvae L3 wandering		4
fat body, white prepupae		4
fat body, pupae P8		4
carcass, larvae L3 wandering		9
carcass, 1-day adult		3
carcass, 4-day adult		4
carcass, 20-day adult		4
ovary, virgin 4-day female		1
ovary, mated 4-day female		1
testis, mated 4-day male		1
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		6
central nervous system, larvae L3		6
central nervous system, pupae P8		3
head, virgin 1-day female		5
head, virgin 4-day female		3
head, virgin 20-day female		3
head, mated 1-day female		2
head, mated 4-day female		2
head, mated 20-day female		3
head, mated 1-day male		5
head, mated 4-day male		5
head, mated 20-day male		7
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		4
digestive system, 4-day adult		5
digestive system, 20-day adult		5
fat body, larvae L3 wandering		4
fat body, white prepupae		4
fat body, pupae P8		4
carcass, larvae L3 wandering		9
carcass, 1-day adult		3
carcass, 4-day adult		4
carcass, 20-day adult		4
ovary, virgin 4-day female		1
ovary, mated 4-day female		1
testis, mated 4-day male		1
accessory gland, mated 4-day male		2
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		6
central nervous system, larvae L3		6
central nervous system, pupae P8		3
head, virgin 1-day female		5
head, virgin 4-day female		3
head, virgin 20-day female		3
head, mated 1-day female		2
head, mated 4-day female		2
head, mated 20-day female		3
head, mated 1-day male		5
head, mated 4-day male		5
head, mated 20-day male		7
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		4
digestive system, 4-day adult		5
digestive system, 20-day adult		5
fat body, larvae L3 wandering		4
fat body, white prepupae		4
fat body, pupae P8		4
carcass, larvae L3 wandering		9
carcass, 1-day adult		3
carcass, 4-day adult		4
carcass, 20-day adult		4
ovary, virgin 4-day female		1
ovary, mated 4-day female		1
testis, mated 4-day male		1
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		6
central nervous system, larvae L3		6
central nervous system, pupae P8		3
head, virgin 1-day female		5
head, virgin 4-day female		3
head, virgin 20-day female		3
head, mated 1-day female		2
head, mated 4-day female		2
head, mated 20-day female		3
head, mated 1-day male		5
head, mated 4-day male		5
head, mated 20-day male		7
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		4
digestive system, 4-day adult		5
digestive system, 20-day adult		5
fat body, larvae L3 wandering		4
fat body, white prepupae		4
fat body, pupae P8		4
carcass, larvae L3 wandering		9
carcass, 1-day adult		3
carcass, 4-day adult		4
carcass, 20-day adult		4
ovary, virgin 4-day female		1
ovary, mated 4-day female		1
testis, mated 4-day male		1
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		6
central nervous system, larvae L3		6
central nervous system, pupae P8		3
head, virgin 1-day female		5
head, virgin 4-day female		3
head, virgin 20-day female		3
head, mated 1-day female		2
head, mated 4-day female		2
head, mated 20-day female		3
head, mated 1-day male		5
head, mated 4-day male		5
head, mated 20-day male		7
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		4
digestive system, 4-day adult		5
digestive system, 20-day adult		5
fat body, larvae L3 wandering		4
fat body, white prepupae		4
fat body, pupae P8		4
carcass, larvae L3 wandering		9
carcass, 1-day adult		3
carcass, 4-day adult		4
carcass, 20-day adult		4
ovary, virgin 4-day female		1
ovary, mated 4-day female		1
testis, mated 4-day male		1
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		6
central nervous system, larvae L3		6
central nervous system, pupae P8		3
head, virgin 1-day female		5
head, virgin 4-day female		3
head, virgin 20-day female		3
head, mated 1-day female		2
head, mated 4-day female		2
head, mated 20-day female		3
head, mated 1-day male		5
head, mated 4-day male		5
head, mated 20-day male		7
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		4
digestive system, 4-day adult		5
digestive system, 20-day adult		5
fat body, larvae L3 wandering		4
fat body, white prepupae		4
fat body, pupae P8		4
carcass, larvae L3 wandering		9
carcass, 1-day adult		3
carcass, 4-day adult		4
carcass, 20-day adult		4
ovary, virgin 4-day female		1
ovary, mated 4-day female		1
testis, mated 4-day male		1
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 06-12 hour embryonic stages.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		3
embryo 04-06hr		11
embryo 06-08hr		17
embryo 08-10hr		12
embryo 10-12hr		11
embryo 12-14hr		9
embryo 14-16hr		10
embryo 16-18hr		9
embryo 18-20hr		10
embryo 20-22hr		11
embryo 22-24hr		12
larva L1		15
larva L2		11
larva L3 12hr old		7
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		13
white prepupae new		7
white prepupae 12hr		12
white prepupae 24hr		15
pupae 2d postWPP		10
pupae 3d postWPP		7
pupae 4d postWPP		6
adult male 01day		6
adult male 05day		8
adult male 30day		8
adult female 01day		7
adult female 05day		4
adult female 30day		4
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		3
embryo 04-06hr		11
embryo 06-08hr		17
embryo 08-10hr		12
embryo 10-12hr		11
embryo 12-14hr		9
embryo 14-16hr		10
embryo 16-18hr		9
embryo 18-20hr		10
embryo 20-22hr		11
embryo 22-24hr		12
larva L1		15
larva L2		11
larva L3 12hr old		7
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		13
white prepupae new		7
white prepupae 12hr		12
white prepupae 24hr		15
pupae 2d postWPP		10
pupae 3d postWPP		7
pupae 4d postWPP		6
adult male 01day		6
adult male 05day		8
adult male 30day		8
adult female 01day		7
adult female 05day		4
adult female 30day		4
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		3
embryo 04-06hr		11
embryo 06-08hr		17
embryo 08-10hr		12
embryo 10-12hr		11
embryo 12-14hr		9
embryo 14-16hr		10
embryo 16-18hr		9
embryo 18-20hr		10
embryo 20-22hr		11
embryo 22-24hr		12
larva L1		15
larva L2		11
larva L3 12hr old		7
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		13
white prepupae new		7
white prepupae 12hr		12
white prepupae 24hr		15
pupae 2d postWPP		10
pupae 3d postWPP		7
pupae 4d postWPP		6
adult male 01day		6
adult male 05day		8
adult male 30day		8
adult female 01day		7
adult female 05day		4
adult female 30day		4
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		3
embryo 04-06hr		11
embryo 06-08hr		17
embryo 08-10hr		12
embryo 10-12hr		11
embryo 12-14hr		9
embryo 14-16hr		10
embryo 16-18hr		9
embryo 18-20hr		10
embryo 20-22hr		11
embryo 22-24hr		12
larva L1		15
larva L2		11
larva L3 12hr old		7
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		13
white prepupae new		7
white prepupae 12hr		12
white prepupae 24hr		15
pupae 2d postWPP		10
pupae 3d postWPP		7
pupae 4d postWPP		6
adult male 01day		6
adult male 05day		8
adult male 30day		8
adult female 01day		7
adult female 05day		4
adult female 30day		4
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		3
embryo 04-06hr		11
embryo 06-08hr		17
embryo 08-10hr		12
embryo 10-12hr		11
embryo 12-14hr		9
embryo 14-16hr		10
embryo 16-18hr		9
embryo 18-20hr		10
embryo 20-22hr		11
embryo 22-24hr		12
larva L1		15
larva L2		11
larva L3 12hr old		7
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		13
white prepupae new		7
white prepupae 12hr		12
white prepupae 24hr		15
pupae 2d postWPP		10
pupae 3d postWPP		7
pupae 4d postWPP		6
adult male 01day		6
adult male 05day		8
adult male 30day		8
adult female 01day		7
adult female 05day		4
adult female 30day		4
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		3
embryo 04-06hr		11
embryo 06-08hr		17
embryo 08-10hr		12
embryo 10-12hr		11
embryo 12-14hr		9
embryo 14-16hr		10
embryo 16-18hr		9
embryo 18-20hr		10
embryo 20-22hr		11
embryo 22-24hr		12
larva L1		15
larva L2		11
larva L3 12hr old		7
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		13
white prepupae new		7
white prepupae 12hr		12
white prepupae 24hr		15
pupae 2d postWPP		10
pupae 3d postWPP		7
pupae 4d postWPP		6
adult male 01day		6
adult male 05day		8
adult male 30day		8
adult female 01day		7
adult female 05day		4
adult female 30day		4
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		3
embryo 04-06hr		11
embryo 06-08hr		17
embryo 08-10hr		12
embryo 10-12hr		11
embryo 12-14hr		9
embryo 14-16hr		10
embryo 16-18hr		9
embryo 18-20hr		10
embryo 20-22hr		11
embryo 22-24hr		12
larva L1		15
larva L2		11
larva L3 12hr old		7
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		13
white prepupae new		7
white prepupae 12hr		12
white prepupae 24hr		15
pupae 2d postWPP		10
pupae 3d postWPP		7
pupae 4d postWPP		6
adult male 01day		6
adult male 05day		8
adult male 30day		8
adult female 01day		7
adult female 05day		4
adult female 30day		4
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		3
embryo 04-06hr		11
embryo 06-08hr		17
embryo 08-10hr		12
embryo 10-12hr		11
embryo 12-14hr		9
embryo 14-16hr		10
embryo 16-18hr		9
embryo 18-20hr		10
embryo 20-22hr		11
embryo 22-24hr		12
larva L1		15
larva L2		11
larva L3 12hr old		7
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		11
larva L3 puffstage 7-9		13
white prepupae new		7
white prepupae 12hr		12
white prepupae 24hr		15
pupae 2d postWPP		10
pupae 3d postWPP		7
pupae 4d postWPP		6
adult male 01day		6
adult male 05day		8
adult male 30day		8
adult female 01day		7
adult female 05day		4
adult female 30day		4
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		5
Schneider line 2 Sg4		42
embryonic 1182-4H		41
embryonic GM2		23
embryonic Kc167		10
embryonic S1		1
embryonic S3		35
leg disc CME L1		39
wing disc CME-W2		11
wing disc ML-DmD8		14
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		32
wing disc ML-DmD32		17
haltere disc ML-DmD17-c3		29
eye-antennal disc ML-DmD11		2
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		20
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		20
ovary fGS/OSS		12
ovary OSC		10
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		5
Schneider line 2 Sg4		(42)
embryonic 1182-4H		(41)
embryonic GM2		23
embryonic Kc167		10
embryonic S1		1
embryonic S3		(35)
leg disc CME L1		(39)
wing disc CME-W2		11
wing disc ML-DmD8		14
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		(32)
wing disc ML-DmD32		17
haltere disc ML-DmD17-c3		(29)
eye-antennal disc ML-DmD11		2
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		20
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		20
ovary fGS/OSS		12
ovary OSC		10
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		5
Schneider line 2 Sg4		42
embryonic 1182-4H		41
embryonic GM2		23
embryonic Kc167		10
embryonic S1		1
embryonic S3		35
leg disc CME L1		39
wing disc CME-W2		11
wing disc ML-DmD8		14
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		32
wing disc ML-DmD32		17
haltere disc ML-DmD17-c3		29
eye-antennal disc ML-DmD11		2
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		20
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		20
ovary fGS/OSS		12
ovary OSC		10
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		5
Schneider line 2 Sg4		42
embryonic 1182-4H		41
embryonic GM2		23
embryonic Kc167		10
embryonic S1		1
embryonic S3		35
leg disc CME L1		39
wing disc CME-W2		11
wing disc ML-DmD8		14
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		32
wing disc ML-DmD32		17
haltere disc ML-DmD17-c3		29
eye-antennal disc ML-DmD11		2
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		20
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		20
ovary fGS/OSS		12
ovary OSC		10
ovary OSS		11
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		5
Schneider line 2 Sg4		42
embryonic 1182-4H		41
embryonic GM2		23
embryonic Kc167		10
embryonic S1		1
embryonic S3		35
leg disc CME L1		39
wing disc CME-W2		11
wing disc ML-DmD8		14
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		32
wing disc ML-DmD32		17
haltere disc ML-DmD17-c3		29
eye-antennal disc ML-DmD11		2
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		20
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		20
ovary fGS/OSS		12
ovary OSC		10
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		5
Schneider line 2 Sg4		(42)
embryonic 1182-4H		(41)
embryonic GM2		23
embryonic Kc167		10
embryonic S1		1
embryonic S3		(35)
leg disc CME L1		(39)
wing disc CME-W2		11
wing disc ML-DmD8		14
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		32
wing disc ML-DmD32		17
haltere disc ML-DmD17-c3		29
eye-antennal disc ML-DmD11		2
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		20
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		20
ovary fGS/OSS		12
ovary OSC		10
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		5
Schneider line 2 Sg4		42
embryonic 1182-4H		41
embryonic GM2		23
embryonic Kc167		10
embryonic S1		1
embryonic S3		35
leg disc CME L1		39
wing disc CME-W2		11
wing disc ML-DmD8		14
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		32
wing disc ML-DmD32		17
haltere disc ML-DmD17-c3		29
eye-antennal disc ML-DmD11		2
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		20
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		20
ovary fGS/OSS		12
ovary OSC		10
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		5
Schneider line 2 Sg4		42
embryonic 1182-4H		41
embryonic GM2		23
embryonic Kc167		10
embryonic S1		1
embryonic S3		35
leg disc CME L1		39
wing disc CME-W2		11
wing disc ML-DmD8		14
wing disc ML-DmD9		18
wing disc ML-DmD16-c3		3
wing disc ML-DmD21		32
wing disc ML-DmD32		17
haltere disc ML-DmD17-c3		29
eye-antennal disc ML-DmD11		2
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		20
CNS ML-DmBG1-c1		0
CNS ML-DmBG2-c2		0
tumorous blood cells mbn2		20
ovary fGS/OSS		12
ovary OSC		10
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		3
cold shock, 4-day adult		2
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		4
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		2
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		4
Rotenone 8 μg 12 hrs, larvae L3		5
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		3
cold shock, 4-day adult		2
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		4
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		2
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		4
Rotenone 8 μg 12 hrs, larvae L3		5
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		3
cold shock, 4-day adult		2
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		4
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		2
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		4
Rotenone 8 μg 12 hrs, larvae L3		5
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		3
cold shock, 4-day adult		2
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		4
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		2
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		4
Rotenone 8 μg 12 hrs, larvae L3		5
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		3
cold shock, 4-day adult		2
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		4
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		2
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		4
Rotenone 8 μg 12 hrs, larvae L3		5
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		3
cold shock, 4-day adult		2
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		4
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		2
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		4
Rotenone 8 μg 12 hrs, larvae L3		5
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		3
cold shock, 4-day adult		2
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		4
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		2
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		4
Rotenone 8 μg 12 hrs, larvae L3		5
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		3
cold shock, 4-day adult		2
heat shock, 4-day adult		3
Cadmium 50 mM 6 hrs, larvae L3		4
Cadmium 50 mM 12 hrs, larvae L3		2
Cadmium 50 mM 48 hrs, 4-day adult		2
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		3
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		2
Zinc 4.5 mM 48 hrs, 4-day adult		3
Ethanol 2.5% 3 hrs, larvae L3		2
Ethanol 5% 3 hrs, larvae L3		3
Ethanol 10% 3 hrs, larvae L3		3
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		4
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		4
Rotenone 8 μg 12 hrs, larvae L3		5
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010)

mE2_34_mRNA_expression_cluster_09

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0030662

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG9220-RA;S.CX001699

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

viable, with Scer\GAL4^pnr-MD237

CG9220^GD14159

Other Phenotypes

Allele

body color defective, with Scer\GAL4^pnr-MD237

CG9220^GD14159

Phenotype manifest in

Allele

mesothoracic tergum, with Scer\GAL4^pnr-MD237

CG9220^GD14159

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of CG9220	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 3 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG9220	Mutagen	Stocks	Known lesion
CG9220^GD14159	in vitro construct - RNAi in vitro construct - regulatory fusion	2	Yes
CG9220^KK109150	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG9220^dsRNA.cLa	in vitro construct - RNAi	0	Yes

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD14159}

P{KK109150}

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 5 terms )

Molecular Function

CV term

Evidence

References

acetylglucosaminyltransferase activity

non-traceable author statement

(Wilson, 2002)

glucuronosyltransferase activity

non-traceable author statement

(Wilson, 2002)

transferase activity, transferring hexosyl groups

inferred from electronic annotation with InterPro:IPR008428

(FlyBase Curators et al., 2004-)

Biological Process

CV term

Evidence

References

chondroitin sulfate biosynthetic process

non-traceable author statement

(Wilson, 2002)

Cellular Component

CV term

Evidence

References

Golgi cisterna membrane

inferred from electronic annotation with InterPro:IPR008428

(FlyBase Curators et al., 2004-)

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG9220 allele

Gene

References

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0030662

Orthologs

OrthoDB Orthologs (47) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG679FSG

Dipteran inclusive ortholog search

EOG6BP1KT

Insect inclusive ortholog search

EOG69P8TF

Arthropod inclusive ortholog search

EOG6ZGMTB

Metazoa inclusive ortholog search

EOG6FBWKR

Orthologs in Drosophila Species (EOG679FSG)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA22578

Drosophila persimilis

Dper\GL16444

Drosophila willistoni

Dwil\GK25624

Drosophila virilis

Dvir\GJ19224

Drosophila mojavensis

Dmoj\GI15636

Drosophila grimshawi

Dgri\GH11859

Orthologs in non-Drosophila Dipterans (EOG6BP1KT)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL006466

Anopheles gambiae

Malaria mosquito

Agam\AGAP001010

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ015759

Orthologs in non-Dipteran Insects (EOG69P8TF)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Apis mellifera

Western honey bee

Amel\GB40162

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG024989

Acromyrmex echinatior

Panamanian leafcutter ant

Aech\AECH17212

Atta cephalotes

Leafcutter ant

Acep\ACEP27792

Atta cephalotes

Leafcutter ant

Acep\ACEP27790

Camponotus floridanus

Florida carpenter ant

Cflo\CFLO18642

Harpegnathos saltator

Jerdons jumping ant

Hsal\HSAL22165

Linepithema humile

Argentine ant

Lhum\LH21372

Pogonomyrmex barbatus

Red harvester ant

Pbar\PB19976

Solenopsis invicta

Red fire ant

Sinv\SINV25934

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI000401

Bombyx mori

Silkmoth

Bmor\BGIBMGA012391

Pediculus humanus

Human body louse

Phum\PHUM115050

Tribolium castaneum

Red flour beetle

Tcas\TC011371

Orthologs in non-Insect Arthropods (EOG6ZGMTB)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Daphnia pulex

Water flea

Dpux\rpoB

Ixodes scapularis

Deer tick

Isca\ISCW013435

Orthologs in non-Arthropod Metazoa (EOG6FBWKR)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Caenorhabditis elegans

Nematode

Cele\sqv-5

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_013283gn

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_016693gn

Danio rerio

Zebrafish

Drer\chsy1

Danio rerio

Zebrafish

Drer\si:xx-bac7cse.2

Xenopus tropicalis

Western clawed frog

Xtro\chsy3

Xenopus tropicalis

Western clawed frog

Xtro\chsy1

Gallus gallus

Domestic chicken

Ggal\ENSGALG00000000145

Gallus gallus

Domestic chicken

Ggal\CHSY3

Gallus gallus

Domestic chicken

Ggal\CHSY1

Mus musculus

House mouse

Mmus\Chsy1

Mus musculus

House mouse

Mmus\Chsy3

Rattus norvegicus

Norway rat

Rnor\Chsy1

Rattus norvegicus

Norway rat

Rnor\Chsy3

Homo sapiens

Human

Hsap\CHSY1

Homo sapiens

Human

Hsap\CHSY3

Human Orthologs (2)

Gene

OMIM

HGNC

Hsap\CHSY1

Hsap\CHSY3

AAA Orthologs (11) based on analysis using Dmel annotation version 4.3

Organism

Gene

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA22578

Drosophila persimilis

Dper\GL16444

Drosophila willistoni

Dwil\GK25624

Drosophila virilis

Dvir\GJ19224

Drosophila mojavensis

Dmoj\GI15636

Drosophila grimshawi

Dgri\GH11859

Stocks & Reagents

Stocks Listed in FlyBase ( 3 )

VDRC

v106839

P{KK109150}VIE-260B

v29084

w¹¹¹⁸; P{GD14159}v29084

v29085

w¹¹¹⁸; P{GD14159}v29085

Genomic Clones ( 2 )

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 6 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0030662

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

32497

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_206717

RefSeq (Proteins)

•

NP_996440

DDBJ / EMBL / GenBank

•

Entrez Gene - A searchable database of RefSeq genes.

•

32497

UniProtKB/TrEMBL

•

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Chondroitin N-acetylgalactosaminyltransferase (IPR008428)

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0030662

DRSC - Results from RNAi screens.

•

FBgn0030662

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0030662

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG9220-RA;S.CX001699

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0030662

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

32497

modMine - Data generated by the modENCODE project.

•

FBgn0030662

Synonyms & Secondary IDs ( 1 )

Reported As

Symbol Synonym

CG9220

(Luo et al., 2006, Keleman et al., 2009.8.5)

Name Synonym

Secondary FlyBase IDs

References ( 10 )

Research paper

Luo et al., 2006, J. Biol. Chem. 281(14): 9393--9399: Protein O-fucosyltransferase 2 adds O-fucose to thrombospondin type 1 repeats. [FBrf0194749]

Supplementary material

The modENCODE Consortium, 2010, Science 330(6012):: DataS14: Gene co-expression clusters. [FBrf0213979]
Mummery-Widmer et al., 2009, Nature 458(7241):: Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]

Review

Wilson, 2002, Curr. Opin. Struct. Biol. 12(5): 569--577: Glycosylation of proteins in plants and invertebrates. [FBrf0155642]

Personal communication to FlyBase

Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.: Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file): Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]

DNA/RNA sequence record

Hwang, 2003.2.22, GenBank/EMBL/DDBJ: AY241926: Drosophila melanogaster chondroitin synthase-like protein mRNA, complete cds. [FBrf0159412]