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Gene Dmel\Pis

General Information
Symbol	Dmel\Pis	Species	D. melanogaster
Name	Phosphatidylinositol synthase	Annotation symbol	CG9245
Feature type	protein_coding_gene	FlyBase ID	FBgn0030670
Gene Model Status	Current	Stock availability	5 publicly available
Also Known As	dpis
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	13E8-13E8	Sequence location	X:15,595,484..15,597,798 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Phosphatidylinositol synthase is referred to in FlyBase by the symbol Dmel\Pis (CG9245, FBgn0030670). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity. There is experimental evidence that it is involved in the biological process: phototransduction. 8 alleles are reported. The phenotype of these alleles is annotated with: rhabdomere. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed in adult male stages. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male accessory gland, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult ovary, adult testis, larval carcass. Gene sequence location is X:15595484..15597798.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10	Controlled Vocabulary Terms day 42 of adulthood day 41 of adulthood day 30 of adulthood day 49 of adulthood day 17 of adulthood day 45 of adulthood day 8 of adulthood day 26 of adulthood day 21 of adulthood day 13 of adulthood day 25 of adulthood day 20 of adulthood day 22 of adulthood day 39 of adulthood day 7 of adulthood day 36 of adulthood day 11 of adulthood day 37 of adulthood day 27 of adulthood day 18 of adulthood day 19 of adulthood day 28 of adulthood day 9 of adulthood day 29 of adulthood adult heart day 40 of adulthood day 16 of adulthood day 24 of adulthood day 15 of adulthood day 33 of adulthood day 43 of adulthood day 47 of adulthood day 38 of adulthood day 32 of adulthood day 48 of adulthood day 23 of adulthood day 35 of adulthood day 12 of adulthood day 10 of adulthood day 31 of adulthood day 34 of adulthood day 44 of adulthood day 14 of adulthood day 46 of adulthood
FB2012_01	Sequence features HFA20178 BKN29207
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 13E8-13E8   Limits computationally determined from genome sequence between P{EP}CG6340EP1109&P{EP}l(1)G0168EP491 and P{EP}EP1489
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Pis for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.39
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Pis-RA FBtr0074058  NM_132827   1372   224 Pis-RB FBtr0074059  NM_167456   1647   81
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Pis-PA   FBpp0073874   25.5   224   8.11     NP_573055   AAF48491 Pis-PB   FBpp0073875   9.1   81   5.41     NP_727878   AAN09359
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • CDP-alcohol phosphatidyltransferase (IPR000462) CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote (IPR014387)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA142009   AA142010   AA698286   AE014298 AAF48491   AE014298 AAN09359   AI386930   AI387784   AI402448   AI403433   AI404698   AI405365   AJ570197   AJ570198   AJ570199   AJ570200   AJ570201   AJ570202   AJ570203   AJ570204   AJ570206   AJ570207   AJ570208   AJ570209   AJ570210   AJ570211   AJ570212   AJ570213   AJ570214   AJ570215   AJ570217   AJ570218   AJ570219   AJ570220   AJ570221   AJ570222   AX664464   AY094866 AAM11219   BF487621   BI238601   BI243374   BI356451   BI482671   BI564425   BI566200   BI567056   BI576687   BI576784   BI576886   BI576898   BI583818   BI583832   BI584737   BI585551   BI586028   BI588477   BI589270   BI593448   BI608063   BI609390   BI612910   BI612956   BI613224   BI617576   BI617790   BI617913   BI618370   BI619691   BI620482   BI621789   BI622825   BI623642   BI625811   BI626126   BI631738   BI634447   BI640601   BT126295   CA806824   CO177531   CO178834   CO179125   CO183817   CO186665   CO196130   CO263105   CO276350   CO277260   CO280232   CO291659   CO293476   CO298022   CO299328   CO301540   CO307874   CO308209   CO314068   CO314572   CO314791   CO316616   CO316784   CO319857   CO324393   CO328214   EC058347   EC061850   EC066522   EC070724   EC071169   EC077597   EC077654   EC085133   EC085686   EC196803   EC197525   EC202823   EC202839   EC207093   EC211030   EC214234   EC217712   EC224235   EC224473   EC230295   EC233946   EC237196   EC238507   EC243650   EC252755   EL881614   EV593418   EV595903   EV596748   GH943888   GH945843   GH946746   GH947017   GH947638   GH947811   GH948635   GH949738   GH950689   GH950977   GH951429   GH951486   GH952137   GH952672   GH952845   GH953514   GH954544   GH955128   GH955533   GH956448   GH956552   GH958474   GH958679   GH958694   GH959885   GH965432   GH965924   GH967120   GH968842   GH968975   GH969282   GH969483   GH970583   GH970852   GH970990   GH971232   GH971438   GH973537   GH973692   GH975155   GH975535   GH975618   GH977212   GH977718   GH979432   GH979498   GH979632   GH979676   GH980298   GH980327   GH980650   GH980757   GH981072   GH981361   GH981520   GH981763   GH982014   GH982288   GH982424   GH982697   GH982984   GH983993   GH985100
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8IR29 Q8SX37
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
expression microarray Stage Tissue/Position (including subcellular localization) Reference adult stage   eye   (Xu et al., 2004) northern blot Stage Tissue/Position (including subcellular localization) Reference adult stage   eye   (Xu et al., 2004)
Additional Descriptive Data
	Eye-enriched transcripts determined by ratio of expression level in wild-type heads. versus expression level in so heads. (Xu et al., 2004)
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0030670    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0030670 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed in adult male stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0030670 expression level Developmental Stage   Expression Level embryo 00-02hr    2770 embryo 02-04hr    1569 embryo 04-06hr    1739 embryo 06-08hr    1678 embryo 08-10hr    1687 embryo 10-12hr    1953 embryo 12-14hr    1623 embryo 14-16hr    1806 embryo 16-18hr    2107 embryo 18-20hr    2573 embryo 20-22hr    2339 embryo 22-24hr    2738 larva L1    2246 larva L2    1715 larva L3 12hr old    1579 larva L3 puffstage 1-2    2526 larva L3 puffstage 3-6    2739 larva L3 puffstage 7-9    2924 white prepupae new    2623 white prepupae 12hr    2869 white prepupae 24hr    2215 pupae 2d postWPP    2098 pupae 3d postWPP    2478 pupae 4d postWPP    3496 adult male 01day    4429 adult male 05day    4847 adult male 30day    4791 adult female 01day    3660 adult female 05day    3145 adult female 30day    3148 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2770) embryo 02-04hr  (1569) embryo 04-06hr  (1739) embryo 06-08hr  (1678) embryo 08-10hr  (1687) embryo 10-12hr  (1953) embryo 12-14hr  (1623) embryo 14-16hr  (1806) embryo 16-18hr  (2107) embryo 18-20hr  (2573) embryo 20-22hr  (2339) embryo 22-24hr  (2738) larva L1  (2246) larva L2  (1715) larva L3 12hr old  (1579) larva L3 puffstage 1-2  (2526) larva L3 puffstage 3-6  (2739) larva L3 puffstage 7-9  (2924) white prepupae new  (2623) white prepupae 12hr  (2869) white prepupae 24hr  (2215) pupae 2d postWPP  (2098) pupae 3d postWPP  (2478) pupae 4d postWPP  (3496) adult male 01day  (4429) adult male 05day  (4847) adult male 30day  (4791) adult female 01day  (3660) adult female 05day  (3145) adult female 30day  (3148) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2770) embryo 02-04hr  (1569) embryo 04-06hr  (1739) embryo 06-08hr  (1678) embryo 08-10hr  (1687) embryo 10-12hr  (1953) embryo 12-14hr  (1623) embryo 14-16hr  (1806) embryo 16-18hr  (2107) embryo 18-20hr  (2573) embryo 20-22hr  (2339) embryo 22-24hr  (2738) larva L1  (2246) larva L2  (1715) larva L3 12hr old  (1579) larva L3 puffstage 1-2  (2526) larva L3 puffstage 3-6  (2739) larva L3 puffstage 7-9  (2924) white prepupae new  (2623) white prepupae 12hr  (2869) white prepupae 24hr  (2215) pupae 2d postWPP  (2098) pupae 3d postWPP  (2478) pupae 4d postWPP  (3496) adult male 01day  (4429) adult male 05day  (4847) adult male 30day  (4791) adult female 01day  (3660) adult female 05day  (3145) adult female 30day  (3148) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2770 embryo 02-04hr    1569 embryo 04-06hr    1739 embryo 06-08hr    1678 embryo 08-10hr    1687 embryo 10-12hr    1953 embryo 12-14hr    1623 embryo 14-16hr    1806 embryo 16-18hr    2107 embryo 18-20hr    2573 embryo 20-22hr    2339 embryo 22-24hr    2738 larva L1    2246 larva L2    1715 larva L3 12hr old    1579 larva L3 puffstage 1-2    2526 larva L3 puffstage 3-6    2739 larva L3 puffstage 7-9    2924 white prepupae new    2623 white prepupae 12hr    2869 white prepupae 24hr    2215 pupae 2d postWPP    2098 pupae 3d postWPP    2478 pupae 4d postWPP    3496 adult male 01day    4429 adult male 05day    4847 adult male 30day    4791 adult female 01day    3660 adult female 05day    3145 adult female 30day    3148 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2770 embryo 02-04hr    1569 embryo 04-06hr    1739 embryo 06-08hr    1678 embryo 08-10hr    1687 embryo 10-12hr    1953 embryo 12-14hr    1623 embryo 14-16hr    1806 embryo 16-18hr    2107 embryo 18-20hr    2573 embryo 20-22hr    2339 embryo 22-24hr    2738 larva L1    2246 larva L2    1715 larva L3 12hr old    1579 larva L3 puffstage 1-2    2526 larva L3 puffstage 3-6    2739 larva L3 puffstage 7-9    2924 white prepupae new    2623 white prepupae 12hr    2869 white prepupae 24hr    2215 pupae 2d postWPP    2098 pupae 3d postWPP    2478 pupae 4d postWPP    3496 adult male 01day    4429 adult male 05day    4847 adult male 30day    4791 adult female 01day    3660 adult female 05day    3145 adult female 30day    3148 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0030670 expression level Developmental Stage   Expression Level embryo 00-02hr    2770 embryo 02-04hr    1569 embryo 04-06hr    1739 embryo 06-08hr    1678 embryo 08-10hr    1687 embryo 10-12hr    1953 embryo 12-14hr    1623 embryo 14-16hr    1806 embryo 16-18hr    2107 embryo 18-20hr    2573 embryo 20-22hr    2339 embryo 22-24hr    2738 larva L1    2246 larva L2    1715 larva L3 12hr old    1579 larva L3 puffstage 1-2    2526 larva L3 puffstage 3-6    2739 larva L3 puffstage 7-9    2924 white prepupae new    2623 white prepupae 12hr    2869 white prepupae 24hr    2215 pupae 2d postWPP    2098 pupae 3d postWPP    2478 pupae 4d postWPP    3496 adult male 01day    4429 adult male 05day    4847 adult male 30day    4791 adult female 01day    3660 adult female 05day    3145 adult female 30day    3148 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2770) embryo 02-04hr  (1569) embryo 04-06hr  (1739) embryo 06-08hr  (1678) embryo 08-10hr  (1687) embryo 10-12hr  (1953) embryo 12-14hr  (1623) embryo 14-16hr  (1806) embryo 16-18hr  (2107) embryo 18-20hr  (2573) embryo 20-22hr  (2339) embryo 22-24hr  (2738) larva L1  (2246) larva L2  (1715) larva L3 12hr old  (1579) larva L3 puffstage 1-2  (2526) larva L3 puffstage 3-6  (2739) larva L3 puffstage 7-9  (2924) white prepupae new  (2623) white prepupae 12hr  (2869) white prepupae 24hr  (2215) pupae 2d postWPP  (2098) pupae 3d postWPP  (2478) pupae 4d postWPP  (3496) adult male 01day  (4429) adult male 05day  (4847) adult male 30day  (4791) adult female 01day  (3660) adult female 05day  (3145) adult female 30day  (3148) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2770) embryo 02-04hr  1569 embryo 04-06hr  1739 embryo 06-08hr  1678 embryo 08-10hr  1687 embryo 10-12hr  1953 embryo 12-14hr  1623 embryo 14-16hr  1806 embryo 16-18hr  2107 embryo 18-20hr  (2573) embryo 20-22hr  2339 embryo 22-24hr  (2738) larva L1  2246 larva L2  1715 larva L3 12hr old  1579 larva L3 puffstage 1-2  (2526) larva L3 puffstage 3-6  (2739) larva L3 puffstage 7-9  (2924) white prepupae new  (2623) white prepupae 12hr  (2869) white prepupae 24hr  2215 pupae 2d postWPP  2098 pupae 3d postWPP  (2478) pupae 4d postWPP  (3496) adult male 01day  (4429) adult male 05day  (4847) adult male 30day  (4791) adult female 01day  (3660) adult female 05day  (3145) adult female 30day  (3148) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2770 embryo 02-04hr    1569 embryo 04-06hr    1739 embryo 06-08hr    1678 embryo 08-10hr    1687 embryo 10-12hr    1953 embryo 12-14hr    1623 embryo 14-16hr    1806 embryo 16-18hr    2107 embryo 18-20hr    2573 embryo 20-22hr    2339 embryo 22-24hr    2738 larva L1    2246 larva L2    1715 larva L3 12hr old    1579 larva L3 puffstage 1-2    2526 larva L3 puffstage 3-6    2739 larva L3 puffstage 7-9    2924 white prepupae new    2623 white prepupae 12hr    2869 white prepupae 24hr    2215 pupae 2d postWPP    2098 pupae 3d postWPP    2478 pupae 4d postWPP    3496 adult male 01day    4429 adult male 05day    4847 adult male 30day    4791 adult female 01day    3660 adult female 05day    3145 adult female 30day    3148 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2770 embryo 02-04hr    1569 embryo 04-06hr    1739 embryo 06-08hr    1678 embryo 08-10hr    1687 embryo 10-12hr    1953 embryo 12-14hr    1623 embryo 14-16hr    1806 embryo 16-18hr    2107 embryo 18-20hr    2573 embryo 20-22hr    2339 embryo 22-24hr    2738 larva L1    2246 larva L2    1715 larva L3 12hr old    1579 larva L3 puffstage 1-2    2526 larva L3 puffstage 3-6    2739 larva L3 puffstage 7-9    2924 white prepupae new    2623 white prepupae 12hr    2869 white prepupae 24hr    2215 pupae 2d postWPP    2098 pupae 3d postWPP    2478 pupae 4d postWPP    3496 adult male 01day    4429 adult male 05day    4847 adult male 30day    4791 adult female 01day    3660 adult female 05day    3145 adult female 30day    3148 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0030670    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0030670 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male accessory gland, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult ovary, adult testis, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Heatmap Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea no informative data Larval Carcass no informative data Adult Head no informative data Adult Eye no informative data Adult Brain no informative data Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary no informative data Adult Testis no informative data Adult Male Accessory Gland no informative data Adult Carcass no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_04
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030670 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9245-RB;CG9245-RA;CG9245-RB FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for Pis Stages(s) 1-3 Stages(s) 4-6 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | embryonic stage Pis1 viable, with Scer\GAL4pnr-MD237 PisGD4024 viable | heat sensitive, with Pis1 Pishs.T:Hsap\MYC viable | heat sensitive, with Pishs.T:Hsap\MYC Pis1 viable | heat sensitive (with Pis1) Pishs.T:Hsap\MYC viable | heat sensitive (with Pishs.T:Hsap\MYC) Pis1 Other Phenotypes Allele neurophysiology defective, with Pis1 Pishs.T:Hsap\MYC neurophysiology defective, with Pishs.T:Hsap\MYC Pis1 neurophysiology defective (with Pis1) Pishs.T:Hsap\MYC neurophysiology defective (with Pishs.T:Hsap\MYC) Pis1 Phenotype manifest in Allele eye | somatic clone Pis1 eye photoreceptor cell | somatic clone Pis1 rhabdomere, with Pis1 Pishs.T:Hsap\MYC rhabdomere, with Pishs.T:Hsap\MYC Pis1 rhabdomere (with Pis1) Pishs.T:Hsap\MYC rhabdomere (with Pishs.T:Hsap\MYC) Pis1
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of Pis Class Mutagen Stocks Known lesion Pis1 loss of function allele recombination SCEI endonuclease FLPase 1 Yes
Alleles Carried on Transgenic Constructs ( 7 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Pis Class Mutagen Stocks Known lesion PisGD4024 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Pishs.T:Hsap\MYC in vitro construct - regulatory fusion in vitro construct - coding region fusion 1 Yes PisJF03315 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes PisKK109207 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes PisninaE.PW 1 Yes Pis+tWa in vitro construct - regulatory fusion 0 Yes PisScer\SceI.RS.cWa in vitro construct 0 Yes
Aneuploid Aberrations
Disrupted in	Df(1)Exel6250 (Ryder, 2004.4.26)
Duplicated in	Dp(1;3)DC304 (Popodi, 2010.7.15)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD4024} NA P{KK109207} NA P{TRiP.JF03315} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function
CV term Evidence References
CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity inferred from direct assay (Wang and Montell, 2006)
Biological Process
CV term Evidence References
phototransduction inferred from mutant phenotype (Wang and Montell, 2006)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity inferred from sequence or structural similarity with UniProtKB:O14735 (FlyBase, 1992-)
Biological Process
CV term Evidence References
phospholipid biosynthetic process inferred from electronic annotation with InterPro:IPR000462 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
membrane inferred from electronic annotation with InterPro:IPR000462 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Pis allele Gene References unspecified CdsA (Wang and Montell, 2006) rdgB (Wang and Montell, 2006)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 58856 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0030670 DroID - A comprehensive database of gene and protein interactions. • FBgn0030670 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32506
Orthologs
Genome-wide drosophilid orthologs	Dana\GF22242 Dere\GG19382 Dgri\GH17635 Dmoj\GI16073 Dper\GL16524 Dpse\GA21640 Dsec\GM22537 Dsim\GD15785 Dvir\GJ15718 Dwil\GK15994 Dyak\GE16030
Curated drosophilid orthologs	Dpse\GA21640   Dsim\GD15785
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL014142-PA Aedes aegypti (mosquito) AGAP003478-PA Anopheles gambiae (mosquito) XP_394882.2 Apis mellifera (honey bee) XP_001952628.1 Acyrthosiphon pisum (pea aphid) At1g68000.1 Arabidopsis thaliana (wall cress) 12351 Batrachochytrium dendrobatidis (chytrid fungus) 265399 Branchiostoma floridae (lancelet) BGIBMGA013145-PA Bombyx mori (silk worm) ENSBTAP00000010454 Bos taurus (bovine) CAL0005824 Candida albicans (a form of yeast) CN23060 Caenorhabditis brenneri (small nematode) CBP07826 Caenorhabditis briggsae (nematode) CE21973 Caenorhabditis elegans (worm) ENSCAFP00000024983 Canis familiaris (dog) CAGL0G03157g Candida glabrata (haploid yeast) Chro.80072 Cryptosporidium hominis (obligate parasite) ENSCINP00000012669 Ciona intestinalis (sea squirt) JA11613 Caenorhabditis japonica (nematode) CMM125C Cyanidioschyzon merolae (red alga) cn12050 Cryptococcus neoformans (yeast-like fungus) cgd8_560 Cryptosporidium parvum (protozoan parasite) CPIJ003544 Culex pipens (mosquito) ENSCPOP00000002957 Cavia porcellus (guinea pig) 186369 Chlamidomonas reinhardtii (green alga) RP17224 Caenorhabditis remanei (nematode) ENSCSAVP00000017405 Ciona savignyi (sedentary tunicate) 102702 Capitella spl (polychaete worm) DDB0218645 Dictyostelium discoideum (amoeba) DEHA2C08646g Debaryomyces Hansenii (yeast) 305782 Daphnia pulex (daphnia) ENSDARP00000094826 Danio rerio (zebra fish) ENSECAP00000010036 Equus caballus (horse) XP_650874 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000019620 Gymnopilus aculeatus (mushroom) GL50803_9829 Giardia lamblia (flagellated protozoan) 81815 Hypsipyla robusta (cedar shoot borer) ENSP00000219789 Homo sapiens (human) ISCW012887-PA Ixodes scapularis (deer tick) KLLA0D15037g Kluyveromyces lactis (yeast) 225546 Lottia gigantea (owl limpet) LmjF26.2480 Leishmania major (virus) 22098 Monocosta brevicollis (choanoflagellate) ENSMODP00000019651 Monodelphis domestica (gray opossum) ENSMMUP00000024972 Macaca mulatta (rhesus monkey) ENSMUSP00000032920 Mus musculus (house mouse) 248046 Nematostella vectensis (starlet anemone) XP_001606513.1 Nasonia vitripennis (wasp) ENSOANP00000011411 Ornithorynchus anatinus (platypus) ENSORLP00000000272 Oryzias latipes (japanese killifish) LOC_Os02g03110.1 Oryza sativa (asian rice) 22581 Ostreococcus tauri (green alga) MAL13P1.82 Plasmodium falciparum (protozoal parasite) PHUM004983-PA Pediculus humanus (human body louse) PP18125 Pristionchus pacificus (nematode) 142350 Physcomitrella patens (moss) ENSPPYP00000008202 Pongo pygmaeus (orangutan) 84027 Phytophthora ramorum (sudden oak death pathogen) 127279 Phytophthora sojae (root rot pathogen) 649209 Populus trichocarpa (black cottonwood) ENSPTRP00000013627 Pan troglodytes (chimpanzee) PVX_122605 Plasmodium vivax (protozoal parasite) ENSRNOP00000013691 Rattus norvegicus (norway rat) 5062077 Sorghum bicolor (sorghum) YPR113W Saccharomyces cerevisiae (budding yeast) Smp_132640 Schistosoma mansoni (trematode parasite) SPAC1D4.08 Schizosaccharomyces pombe (fission yeast) XP_798034.1 Strongylocentrotus purpuratus (purple sea urchin) 28979 Trichoplax adhaerens (metazoa) TA15380 Theileria annulata (apicomplexan parasite) XP_967177.1 Tribolium castaneum (red flour beetle) Tc00.1047053503925.80 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053510349.50 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000004212 Tetraodon nigroviridis (green spotted pufferfish) TP02_0830 Theileria parva (parasitic protozoan) 35830 Thalassiosira pseudonana (marine diatom) 3730.m00046 Tetrahymena thermophila (ciliate protozoa) 85506.m00074 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000056219 Xenopus tropicalis (frog) YALI0F20328g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB15702 NV12554 LH19209 ISCW012887 FBgn0233582 FBgn0217996 FBgn0202906 FBgn0068670 FBgn0177407 JGI_V11_305782 FBgn0081625 FBgn0154128 FBgn0138822 FBgn0125105 FBgn0111585 FBgn0099240 CPIJ003544 BGIBMGA013145 ACYPI006624 GB19096 AGAP003478 AAEL014142 PHUM200790 GLEAN_15176
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	24897 w*; P{ninaE-Pis.W}3 27336 Pis1/FM7a; P{hs-Pis.MYC}3/TM2 29383 y1 v1; P{TRiP.JF03315}attP2
VDRC	v106842 P{KK109207}VIE-260B v11852 w1118; P{GD4024}v11852
Genomic Clones ( 2 )
	BACR25C18 BACR28A23 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 166 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE35104
Other clones	DPiM_RE35104 FI14745
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT22594 GH17319 GH18438 GH21669 GH22867 GH24502 GH25342 HL04216 RE40990 RE42605 RE65388 RH11506 RH12209 RH14163 RH22514 RH22535 RH24007 RH25157 RH25748 RH29817 RH31656 RH33292 RH33421 RH33541 RH33556 RH35378 RH36887 RH38605 RH41907 RH41979 RH42334 RH47951 RH48230 RH48388 RH49038 RH50776 RH51640 RH53196 RH54748 RH55956 RH61376 RH61694 RH66295 RH66674 SD23530
Other clones	2280 40106 42797 46996 47250 58331 73469 76925 107231 108520 108802 118009 150047 153624 161482 161677 214417.32 CK01.24C.B6 CK01.66A.C6 CK01.72D.H2 CK01.74C.A4 CK01.104B.G8 CK01.123D.F11 CK01.145B.H1 CK00117 Dmel_neb_013713_0640_2381 Dmel_neb_014218_0699_3221 Dmel_neb_014457_0951_0913 EC26468 EK001039 EK022039 EK053743 EK057661 EK058534 EK087460 EK120602 EK123553 EK153440 EK171136 EK175114 EK181346 EK193507 EK197922 EK203010 EK234924 EK237039 EK237809 EK255913 EK257015 EK265446 EK265847 EK281102 EP08752 ESG015a.E21_H01 IP11414 RP004026350 RP004026720 RP004032602 RP004076531 RP004078811 RP004094292 RP004102904 RP004113089 RP004128463 RP004137967 RP004140016 RP004148206 RP004157577 RP004158277 RP004163109 RP004174419 RP004183559 RP004196766 RP004203171 RP004206228 RP004206686 RP004213627 RP004214726 RP004216757 RP004218117 RP004220508 RP004221050 RP004223395 RP004225669 RP004225763 RP004228102 RP004230446 RP004232277 RP004234140 RP004237822 RP004239069 RP004242252 RP004244485 RP004246181 RP004248015 RP004248447 RP004250556 RP004250935 RP004281097 RP004298787 RP004338661 RP004340613 RP004348642 RP004377654 RP004379979 RP004412666 RP004415990 RP004419244 RP004421431 RP004425296 RP004440444 RP004443411 RP004447820 RP004449248 RP004470932 RP004485758 RP004492070 RP004550739
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0030670 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32506
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Pis CG9245 (Wang and Montell, 2006)
Source for database merge of	Source for merge of: CG9245 anon-WO02059370.38 (FlyBase, 1996-)
Additional comments	Source for merge of CG9245 anon-WO02059370.38 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
	Depletion of head and body extracts with Pis antibodies eliminates phosphatidylinositol synthase activity, indicating that Pis is the only phosphatidylinositol synthase in Drosophila. (Wang and Montell, 2006)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132827 NM_167456 RefSeq (Proteins) • NP_573055 NP_727878 DDBJ / EMBL / GenBank • AAF48491 AAM11219 AAN09359 AJ570197 AJ570198 AJ570199 AJ570200 AJ570201 AJ570202 AJ570203 AJ570204 AJ570206 AJ570207 AJ570208 AJ570209 AJ570210 AJ570211 AJ570212 AJ570213 AJ570214 AJ570215 AJ570217 AJ570218 AJ570219 AJ570220 AJ570221 AJ570222 AX664464 AY094866 BI238601 Entrez Gene - A searchable database of RefSeq genes. • 32506 UniProtKB/TrEMBL • Q8IR29 Q8SX37
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • CDP-alcohol phosphatidyltransferase (IPR000462) CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote (IPR014387)
Linkouts
	BioGRID - A database of protein and genetic interactions • 58856 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0030670 DroID - A comprehensive database of gene and protein interactions. • FBgn0030670 DRSC - Results from RNAi screens. • FBgn0030670 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030670 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9245-RB;CG9245-RA;CG9245-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0030670 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32506 InParanoid A subset of ortholog calls from InParanoid. • AAEL014142-PA Aedes aegypti (mosquito) AGAP003478-PA Anopheles gambiae (mosquito) XP_394882.2 Apis mellifera (honey bee) XP_001952628.1 Acyrthosiphon pisum (pea aphid) At1g68000.1 Arabidopsis thaliana (wall cress) 12351 Batrachochytrium dendrobatidis (chytrid fungus) 265399 Branchiostoma floridae (lancelet) BGIBMGA013145-PA Bombyx mori (silk worm) ENSBTAP00000010454 Bos taurus (bovine) CAL0005824 Candida albicans (a form of yeast) CN23060 Caenorhabditis brenneri (small nematode) CBP07826 Caenorhabditis briggsae (nematode) CE21973 Caenorhabditis elegans (worm) ENSCAFP00000024983 Canis familiaris (dog) CAGL0G03157g Candida glabrata (haploid yeast) Chro.80072 Cryptosporidium hominis (obligate parasite) ENSCINP00000012669 Ciona intestinalis (sea squirt) JA11613 Caenorhabditis japonica (nematode) CMM125C Cyanidioschyzon merolae (red alga) cn12050 Cryptococcus neoformans (yeast-like fungus) cgd8_560 Cryptosporidium parvum (protozoan parasite) CPIJ003544 Culex pipens (mosquito) ENSCPOP00000002957 Cavia porcellus (guinea pig) 186369 Chlamidomonas reinhardtii (green alga) RP17224 Caenorhabditis remanei (nematode) ENSCSAVP00000017405 Ciona savignyi (sedentary tunicate) 102702 Capitella spl (polychaete worm) DDB0218645 Dictyostelium discoideum (amoeba) DEHA2C08646g Debaryomyces Hansenii (yeast) 305782 Daphnia pulex (daphnia) ENSDARP00000094826 Danio rerio (zebra fish) ENSECAP00000010036 Equus caballus (horse) XP_650874 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000019620 Gymnopilus aculeatus (mushroom) GL50803_9829 Giardia lamblia (flagellated protozoan) 81815 Hypsipyla robusta (cedar shoot borer) ENSP00000219789 Homo sapiens (human) ISCW012887-PA Ixodes scapularis (deer tick) KLLA0D15037g Kluyveromyces lactis (yeast) 225546 Lottia gigantea (owl limpet) LmjF26.2480 Leishmania major (virus) 22098 Monocosta brevicollis (choanoflagellate) ENSMODP00000019651 Monodelphis domestica (gray opossum) ENSMMUP00000024972 Macaca mulatta (rhesus monkey) ENSMUSP00000032920 Mus musculus (house mouse) 248046 Nematostella vectensis (starlet anemone) XP_001606513.1 Nasonia vitripennis (wasp) ENSOANP00000011411 Ornithorynchus anatinus (platypus) ENSORLP00000000272 Oryzias latipes (japanese killifish) LOC_Os02g03110.1 Oryza sativa (asian rice) 22581 Ostreococcus tauri (green alga) MAL13P1.82 Plasmodium falciparum (protozoal parasite) PHUM004983-PA Pediculus humanus (human body louse) PP18125 Pristionchus pacificus (nematode) 142350 Physcomitrella patens (moss) ENSPPYP00000008202 Pongo pygmaeus (orangutan) 84027 Phytophthora ramorum (sudden oak death pathogen) 127279 Phytophthora sojae (root rot pathogen) 649209 Populus trichocarpa (black cottonwood) ENSPTRP00000013627 Pan troglodytes (chimpanzee) PVX_122605 Plasmodium vivax (protozoal parasite) ENSRNOP00000013691 Rattus norvegicus (norway rat) 5062077 Sorghum bicolor (sorghum) YPR113W Saccharomyces cerevisiae (budding yeast) Smp_132640 Schistosoma mansoni (trematode parasite) SPAC1D4.08 Schizosaccharomyces pombe (fission yeast) XP_798034.1 Strongylocentrotus purpuratus (purple sea urchin) 28979 Trichoplax adhaerens (metazoa) TA15380 Theileria annulata (apicomplexan parasite) XP_967177.1 Tribolium castaneum (red flour beetle) Tc00.1047053503925.80 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053510349.50 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000004212 Tetraodon nigroviridis (green spotted pufferfish) TP02_0830 Theileria parva (parasitic protozoan) 35830 Thalassiosira pseudonana (marine diatom) 3730.m00046 Tetrahymena thermophila (ciliate protozoa) 85506.m00074 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000056219 Xenopus tropicalis (frog) YALI0F20328g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32506 modMine - Data generated by the modENCODE project. • FBgn0030670 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB15702 NV12554 LH19209 ISCW012887 FBgn0233582 FBgn0217996 FBgn0202906 FBgn0068670 FBgn0177407 JGI_V11_305782 FBgn0081625 FBgn0154128 FBgn0138822 FBgn0125105 FBgn0111585 FBgn0099240 CPIJ003544 BGIBMGA013145 ACYPI006624 GB19096 AGAP003478 AAEL014142 PHUM200790 GLEAN_15176
Synonyms & Secondary IDs ( 9 )
Reported As
Symbol Synonym	anon-WO02059370.38   CG9245 (Wang and Montell, 2006, Garcia-Murillas et al., 2006, Liu and Lehmann, 2008, Keleman et al., 2009.8.5, Perkins et al., 2009, Cammarato et al., 2011) dpis (Wang and Montell, 2006, Huang et al., 2008) dPIS (Wang and Montell, 2006) Pis (Popodi, 2010.7.15)
Name Synonym	CG9245   Drosophila phosphatidylinositol synthase (Wang and Montell, 2006) Phosphatidylinositol synthase (Cammarato et al., 2011) Phosphatidyl-inositol synthase (Liu and Lehmann, 2008) PI synthase (Garcia-Murillas et al., 2006)
Secondary FlyBase IDs
	FBgn0066023
References ( 20 )
Research paper	Liu and Lehmann, 2008, Insect Molec. Biol. 17(2): 91--101 Genes and biological processes controlled by the Drosophila FOXA orthologue Fork head. [FBrf0204414] Garcia-Murillas et al., 2006, Neuron 49(4): 533--546 lazaro encodes a lipid phosphate phosphohydrolase that regulates phosphatidylinositol turnover during Drosophila phototransduction. [FBrf0191316] Wang and Montell, 2006, J. Neurosci. 26(49): 12816--12825 A phosphoinositide synthase required for a sustained light response. [FBrf0193795] Xu et al., 2004, EMBO J. 23(4): 811--822 A lysosomal tetraspanin associated with retinal degeneration identified via a genome-wide screen. [FBrf0174603]
Supplementary material	Cammarato et al., 2011, PLoS ONE 6(4): Table S1. Proteins & Peptides. [FBrf0214682] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Huang et al., 2008, Genetics 180(1): Supplemental Figures and Material. [FBrf0206395] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Popodi, 2010.7.15, Additional rescue information for Dp(1;3)DC304. Additional rescue information for Dp(1;3)DC304. [FBrf0211304] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Perkins et al., 2009, Update to TRiP stock collection. Update to TRiP stock collection. [FBrf0208864] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
FlyBase analysis	FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946] FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Patent	Greenspan and Shaw, 2002, World Patent 02059370: Methods for identifying compounds that modulate disorders related to nitric oxide/cgmp-dependent protein kinase signaling. [FBrf0199104]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation	Find Enzymes, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126664]