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Gene Dmel\MSBP

General Information
Symbol	Dmel\MSBP	Species	D. melanogaster
Name	membrane steroid binding protein	Annotation symbol	CG9066
Feature type	protein_coding_gene	FlyBase ID	FBgn0030703
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	13F17-13F17	Sequence location	X:15,781,600..15,784,149 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene membrane steroid binding protein is referred to in FlyBase by the symbol Dmel\MSBP (CG9066, FBgn0030703). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: ecdysone binding. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Cytochrome b5. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed during late larval stages, during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult thoracico-abdominal ganglion, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, adult testis. Comments on Affy2 ProbeSet: ProbeSet 1623481_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of MSBP. Gene sequence location is X:15781600..15784149.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10	Controlled Vocabulary Terms day 42 of adulthood day 41 of adulthood day 30 of adulthood day 49 of adulthood day 17 of adulthood day 45 of adulthood day 8 of adulthood day 26 of adulthood day 21 of adulthood day 13 of adulthood day 25 of adulthood day 20 of adulthood day 22 of adulthood day 39 of adulthood day 7 of adulthood day 36 of adulthood day 11 of adulthood day 37 of adulthood day 27 of adulthood day 18 of adulthood day 19 of adulthood day 28 of adulthood day 9 of adulthood day 29 of adulthood adult heart day 40 of adulthood day 16 of adulthood day 24 of adulthood day 15 of adulthood day 33 of adulthood day 43 of adulthood day 47 of adulthood day 38 of adulthood day 32 of adulthood day 48 of adulthood day 23 of adulthood day 35 of adulthood day 12 of adulthood day 10 of adulthood day 31 of adulthood day 34 of adulthood day 44 of adulthood day 14 of adulthood day 46 of adulthood
FB2012_01	Sequence features BKN45405 BKN23060 HFA20146
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 13F17-13F17   Limits computationally determined from genome sequence between P{EP}Gβ13FEP1071 and P{EP}EP1458&P{EP}EP1522
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\MSBP for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.42
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) MSBP-RA FBtr0074166  NM_132859   1470   248 MSBP-RB FBtr0301598  NM_001169294   1427   248
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein MSBP-PA   FBpp0073959   27.9   248   4.34     NP_573087   AAF48534 MSBP-PB   FBpp0290813   27.9   248   4.34     NP_001162765   ACZ95300
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Cytochrome b5 (IPR001199)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA201867   AA390415   AA438628   AA439706   AA695715   AE014298 AAF48534   AE014298 ACZ95300   AI297635   AW942253   AY061163 AAL28711   AY232184   BG633411   BI578176   BI578216   BI579741   BI580183   BI634830   CA803813   CA806235   CO185259   CO189628   CO191779   CO192674   CO194410   CO266672   CO271986   CO274432   CO277678   CO278399   CO287956   CO300370   CO300401   CO306148   CO324661   CO342953   EC060624   EC061146   EC083527   EC199946   EC207557   EC209126   EC211300   EC218220   EC223155   EC223821   EC244478   EC249164   EC253653   EL870351   EV595775   EV596806   GH750245   GH777140   GH781555   GH804570   GH814716   GH815877   GH827644   GH828852   GH841080   GH846988   GH848823   GH852743   GH857301   GH860531   GH868697   GH900534   GH900537   GH907405   GH921785
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VXM4
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0030703    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0030703 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed during late larval stages, during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0030703 expression level Developmental Stage   Expression Level embryo 00-02hr    9262 embryo 02-04hr    8335 embryo 04-06hr    6506 embryo 06-08hr    5652 embryo 08-10hr    7369 embryo 10-12hr    7750 embryo 12-14hr    8501 embryo 14-16hr    4626 embryo 16-18hr    5648 embryo 18-20hr    3795 embryo 20-22hr    4070 embryo 22-24hr    6202 larva L1    3680 larva L2    4416 larva L3 12hr old    4496 larva L3 puffstage 1-2    5897 larva L3 puffstage 3-6    7710 larva L3 puffstage 7-9    11166 white prepupae new    11483 white prepupae 12hr    9337 white prepupae 24hr    7481 pupae 2d postWPP    5991 pupae 3d postWPP    5830 pupae 4d postWPP    3819 adult male 01day    9082 adult male 05day    8548 adult male 30day    6708 adult female 01day    6228 adult female 05day    9319 adult female 30day    8554 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (9262) embryo 02-04hr  (8335) embryo 04-06hr  (6506) embryo 06-08hr  (5652) embryo 08-10hr  (7369) embryo 10-12hr  (7750) embryo 12-14hr  (8501) embryo 14-16hr  (4626) embryo 16-18hr  (5648) embryo 18-20hr  (3795) embryo 20-22hr  (4070) embryo 22-24hr  (6202) larva L1  (3680) larva L2  (4416) larva L3 12hr old  (4496) larva L3 puffstage 1-2  (5897) larva L3 puffstage 3-6  (7710) larva L3 puffstage 7-9  (11166) white prepupae new  (11483) white prepupae 12hr  (9337) white prepupae 24hr  (7481) pupae 2d postWPP  (5991) pupae 3d postWPP  (5830) pupae 4d postWPP  (3819) adult male 01day  (9082) adult male 05day  (8548) adult male 30day  (6708) adult female 01day  (6228) adult female 05day  (9319) adult female 30day  (8554) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (9262) embryo 02-04hr  (8335) embryo 04-06hr  (6506) embryo 06-08hr  (5652) embryo 08-10hr  (7369) embryo 10-12hr  (7750) embryo 12-14hr  (8501) embryo 14-16hr  (4626) embryo 16-18hr  (5648) embryo 18-20hr  (3795) embryo 20-22hr  (4070) embryo 22-24hr  (6202) larva L1  (3680) larva L2  (4416) larva L3 12hr old  (4496) larva L3 puffstage 1-2  (5897) larva L3 puffstage 3-6  (7710) larva L3 puffstage 7-9  (11166) white prepupae new  (11483) white prepupae 12hr  (9337) white prepupae 24hr  (7481) pupae 2d postWPP  (5991) pupae 3d postWPP  (5830) pupae 4d postWPP  (3819) adult male 01day  (9082) adult male 05day  (8548) adult male 30day  (6708) adult female 01day  (6228) adult female 05day  (9319) adult female 30day  (8554) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    9262 embryo 02-04hr    8335 embryo 04-06hr    6506 embryo 06-08hr    5652 embryo 08-10hr    7369 embryo 10-12hr    7750 embryo 12-14hr    8501 embryo 14-16hr    4626 embryo 16-18hr    5648 embryo 18-20hr    3795 embryo 20-22hr    4070 embryo 22-24hr    6202 larva L1    3680 larva L2    4416 larva L3 12hr old    4496 larva L3 puffstage 1-2    5897 larva L3 puffstage 3-6    7710 larva L3 puffstage 7-9  (11166) white prepupae new  (11483) white prepupae 12hr    9337 white prepupae 24hr    7481 pupae 2d postWPP    5991 pupae 3d postWPP    5830 pupae 4d postWPP    3819 adult male 01day    9082 adult male 05day    8548 adult male 30day    6708 adult female 01day    6228 adult female 05day    9319 adult female 30day    8554 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    9262 embryo 02-04hr    8335 embryo 04-06hr    6506 embryo 06-08hr    5652 embryo 08-10hr    7369 embryo 10-12hr    7750 embryo 12-14hr    8501 embryo 14-16hr    4626 embryo 16-18hr    5648 embryo 18-20hr    3795 embryo 20-22hr    4070 embryo 22-24hr    6202 larva L1    3680 larva L2    4416 larva L3 12hr old    4496 larva L3 puffstage 1-2    5897 larva L3 puffstage 3-6    7710 larva L3 puffstage 7-9    11166 white prepupae new    11483 white prepupae 12hr    9337 white prepupae 24hr    7481 pupae 2d postWPP    5991 pupae 3d postWPP    5830 pupae 4d postWPP    3819 adult male 01day    9082 adult male 05day    8548 adult male 30day    6708 adult female 01day    6228 adult female 05day    9319 adult female 30day    8554 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0030703 expression level Developmental Stage   Expression Level embryo 00-02hr    9262 embryo 02-04hr    8335 embryo 04-06hr    6506 embryo 06-08hr    5652 embryo 08-10hr    7369 embryo 10-12hr    7750 embryo 12-14hr    8501 embryo 14-16hr    4626 embryo 16-18hr    5648 embryo 18-20hr    3795 embryo 20-22hr    4070 embryo 22-24hr    6202 larva L1    3680 larva L2    4416 larva L3 12hr old    4496 larva L3 puffstage 1-2    5897 larva L3 puffstage 3-6    7710 larva L3 puffstage 7-9    11166 white prepupae new    11483 white prepupae 12hr    9337 white prepupae 24hr    7481 pupae 2d postWPP    5991 pupae 3d postWPP    5830 pupae 4d postWPP    3819 adult male 01day    9082 adult male 05day    8548 adult male 30day    6708 adult female 01day    6228 adult female 05day    9319 adult female 30day    8554 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (9262) embryo 02-04hr  (8335) embryo 04-06hr  (6506) embryo 06-08hr  (5652) embryo 08-10hr  (7369) embryo 10-12hr  (7750) embryo 12-14hr  (8501) embryo 14-16hr  (4626) embryo 16-18hr  (5648) embryo 18-20hr  (3795) embryo 20-22hr  (4070) embryo 22-24hr  (6202) larva L1  (3680) larva L2  (4416) larva L3 12hr old  (4496) larva L3 puffstage 1-2  (5897) larva L3 puffstage 3-6  (7710) larva L3 puffstage 7-9  (11166) white prepupae new  (11483) white prepupae 12hr  (9337) white prepupae 24hr  (7481) pupae 2d postWPP  (5991) pupae 3d postWPP  (5830) pupae 4d postWPP  (3819) adult male 01day  (9082) adult male 05day  (8548) adult male 30day  (6708) adult female 01day  (6228) adult female 05day  (9319) adult female 30day  (8554) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (9262) embryo 02-04hr  (8335) embryo 04-06hr  (6506) embryo 06-08hr  (5652) embryo 08-10hr  (7369) embryo 10-12hr  (7750) embryo 12-14hr  (8501) embryo 14-16hr  (4626) embryo 16-18hr  (5648) embryo 18-20hr  (3795) embryo 20-22hr  (4070) embryo 22-24hr  (6202) larva L1  (3680) larva L2  (4416) larva L3 12hr old  (4496) larva L3 puffstage 1-2  (5897) larva L3 puffstage 3-6  (7710) larva L3 puffstage 7-9  (11166) white prepupae new  (11483) white prepupae 12hr  (9337) white prepupae 24hr  (7481) pupae 2d postWPP  (5991) pupae 3d postWPP  (5830) pupae 4d postWPP  (3819) adult male 01day  (9082) adult male 05day  (8548) adult male 30day  (6708) adult female 01day  (6228) adult female 05day  (9319) adult female 30day  (8554) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    9262 embryo 02-04hr    8335 embryo 04-06hr    6506 embryo 06-08hr    5652 embryo 08-10hr    7369 embryo 10-12hr    7750 embryo 12-14hr    8501 embryo 14-16hr    4626 embryo 16-18hr    5648 embryo 18-20hr    3795 embryo 20-22hr    4070 embryo 22-24hr    6202 larva L1    3680 larva L2    4416 larva L3 12hr old    4496 larva L3 puffstage 1-2    5897 larva L3 puffstage 3-6    7710 larva L3 puffstage 7-9  11166 white prepupae new  11483 white prepupae 12hr    9337 white prepupae 24hr    7481 pupae 2d postWPP    5991 pupae 3d postWPP    5830 pupae 4d postWPP    3819 adult male 01day    9082 adult male 05day    8548 adult male 30day    6708 adult female 01day    6228 adult female 05day    9319 adult female 30day    8554 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    9262 embryo 02-04hr    8335 embryo 04-06hr    6506 embryo 06-08hr    5652 embryo 08-10hr    7369 embryo 10-12hr    7750 embryo 12-14hr    8501 embryo 14-16hr    4626 embryo 16-18hr    5648 embryo 18-20hr    3795 embryo 20-22hr    4070 embryo 22-24hr    6202 larva L1    3680 larva L2    4416 larva L3 12hr old    4496 larva L3 puffstage 1-2    5897 larva L3 puffstage 3-6    7710 larva L3 puffstage 7-9    11166 white prepupae new    11483 white prepupae 12hr    9337 white prepupae 24hr    7481 pupae 2d postWPP    5991 pupae 3d postWPP    5830 pupae 4d postWPP    3819 adult male 01day    9082 adult male 05day    8548 adult male 30day    6708 adult female 01day    6228 adult female 05day    9319 adult female 30day    8554 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0030703    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0030703 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult thoracico-abdominal ganglion, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, adult testis. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0030703 expression level Tissue   Expression Level Larval Central Nervous System    469.975 Larval Midgut    1113.1 Larval Hindgut    853.1 Larval Malpighian Tubules    1602.4 Larval Fat Body    1415.4 Larval Salivary Gland    605.2 Larval Trachea    570.05 Larval Carcass    853.175 Adult Head    859.7 Adult Eye    444.525 Adult Brain    440.9 Adult Thoracic-Abdominal Ganglion    556.3 Adult Crop    2039.3 Adult Midgut    1332 Adult Hindgut    1342.8 Adult Malpighian Tubules    1107.9 Adult Fat Body    3546.2 Adult Salivary Gland    1049.2 Adult Heart    2773.775 Adult VirginFemale Spermatheca    1364.8 Adult InseminatedFemale Spermatheca    1188.9 Adult Ovary    730.2 Adult Testis    358.9 Adult Male Accessory Gland    782.7 Adult Carcass    2373.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    469.975 Larval Midgut  (1113.1) Larval Hindgut  (853.1) Larval Malpighian Tubules  (1602.4) Larval Fat Body  (1415.4) Larval Salivary Gland  (605.2) Larval Trachea  (570.05) Larval Carcass  (853.175) Adult Head  (859.7) Adult Eye    444.525 Adult Brain    440.9 Adult Thoracic-Abdominal Ganglion  (556.3) Adult Crop  (2039.3) Adult Midgut  (1332) Adult Hindgut  (1342.8) Adult Malpighian Tubules  (1107.9) Adult Fat Body  (3546.2) Adult Salivary Gland  (1049.2) Adult Heart  (2773.775) Adult VirginFemale Spermatheca  (1364.8) Adult InseminatedFemale Spermatheca  (1188.9) Adult Ovary  (730.2) Adult Testis    358.9 Adult Male Accessory Gland  (782.7) Adult Carcass  (2373.9) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    469.975 Larval Midgut  (1113.1) Larval Hindgut    853.1 Larval Malpighian Tubules  (1602.4) Larval Fat Body  (1415.4) Larval Salivary Gland    605.2 Larval Trachea    570.05 Larval Carcass    853.175 Adult Head    859.7 Adult Eye    444.525 Adult Brain    440.9 Adult Thoracic-Abdominal Ganglion    556.3 Adult Crop  (2039.3) Adult Midgut  (1332) Adult Hindgut  (1342.8) Adult Malpighian Tubules  (1107.9) Adult Fat Body  (3546.2) Adult Salivary Gland  1049.2 Adult Heart  (2773.775) Adult VirginFemale Spermatheca  (1364.8) Adult InseminatedFemale Spermatheca  (1188.9) Adult Ovary    730.2 Adult Testis    358.9 Adult Male Accessory Gland    782.7 Adult Carcass  (2373.9) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    469.975 Larval Midgut    1113.1 Larval Hindgut    853.1 Larval Malpighian Tubules    1602.4 Larval Fat Body    1415.4 Larval Salivary Gland    605.2 Larval Trachea    570.05 Larval Carcass    853.175 Adult Head    859.7 Adult Eye    444.525 Adult Brain    440.9 Adult Thoracic-Abdominal Ganglion    556.3 Adult Crop    2039.3 Adult Midgut    1332 Adult Hindgut    1342.8 Adult Malpighian Tubules    1107.9 Adult Fat Body    3546.2 Adult Salivary Gland    1049.2 Adult Heart    2773.775 Adult VirginFemale Spermatheca    1364.8 Adult InseminatedFemale Spermatheca    1188.9 Adult Ovary    730.2 Adult Testis    358.9 Adult Male Accessory Gland    782.7 Adult Carcass    2373.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0030703 expression level Tissue   Expression Level Larval Central Nervous System    469.975 Larval Midgut    1113.1 Larval Hindgut    853.1 Larval Malpighian Tubules    1602.4 Larval Fat Body    1415.4 Larval Salivary Gland    605.2 Larval Trachea    570.05 Larval Carcass    853.175 Adult Head    859.7 Adult Eye    444.525 Adult Brain    440.9 Adult Thoracic-Abdominal Ganglion    556.3 Adult Crop    2039.3 Adult Midgut    1332 Adult Hindgut    1342.8 Adult Malpighian Tubules    1107.9 Adult Fat Body    3546.2 Adult Salivary Gland    1049.2 Adult Heart    2773.775 Adult VirginFemale Spermatheca    1364.8 Adult InseminatedFemale Spermatheca    1188.9 Adult Ovary    730.2 Adult Testis    358.9 Adult Male Accessory Gland    782.7 Adult Carcass    2373.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    469.975 Larval Midgut  (1113.1) Larval Hindgut  (853.1) Larval Malpighian Tubules  (1602.4) Larval Fat Body  (1415.4) Larval Salivary Gland  605.2 Larval Trachea  570.05 Larval Carcass  (853.175) Adult Head  (859.7) Adult Eye    444.525 Adult Brain    440.9 Adult Thoracic-Abdominal Ganglion  556.3 Adult Crop  (2039.3) Adult Midgut  (1332) Adult Hindgut  (1342.8) Adult Malpighian Tubules  (1107.9) Adult Fat Body  (3546.2) Adult Salivary Gland  (1049.2) Adult Heart  (2773.775) Adult VirginFemale Spermatheca  (1364.8) Adult InseminatedFemale Spermatheca  (1188.9) Adult Ovary  730.2 Adult Testis    358.9 Adult Male Accessory Gland  782.7 Adult Carcass  (2373.9) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    469.975 Larval Midgut  1113.1 Larval Hindgut    853.1 Larval Malpighian Tubules  1602.4 Larval Fat Body  1415.4 Larval Salivary Gland    605.2 Larval Trachea    570.05 Larval Carcass    853.175 Adult Head    859.7 Adult Eye    444.525 Adult Brain    440.9 Adult Thoracic-Abdominal Ganglion    556.3 Adult Crop  (2039.3) Adult Midgut  1332 Adult Hindgut  1342.8 Adult Malpighian Tubules  1107.9 Adult Fat Body  (3546.2) Adult Salivary Gland  1049.2 Adult Heart  (2773.775) Adult VirginFemale Spermatheca  1364.8 Adult InseminatedFemale Spermatheca  1188.9 Adult Ovary    730.2 Adult Testis    358.9 Adult Male Accessory Gland    782.7 Adult Carcass  (2373.9) Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    469.975 Larval Midgut    1113.1 Larval Hindgut    853.1 Larval Malpighian Tubules    1602.4 Larval Fat Body    1415.4 Larval Salivary Gland    605.2 Larval Trachea    570.05 Larval Carcass    853.175 Adult Head    859.7 Adult Eye    444.525 Adult Brain    440.9 Adult Thoracic-Abdominal Ganglion    556.3 Adult Crop    2039.3 Adult Midgut    1332 Adult Hindgut    1342.8 Adult Malpighian Tubules    1107.9 Adult Fat Body    3546.2 Adult Salivary Gland    1049.2 Adult Heart    2773.775 Adult VirginFemale Spermatheca    1364.8 Adult InseminatedFemale Spermatheca    1188.9 Adult Ovary    730.2 Adult Testis    358.9 Adult Male Accessory Gland    782.7 Adult Carcass    2373.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    859.7   NA  Eye    444.525   NA  Brain    440.9   469.975  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    556.3   NA  Crop    2039.3   1113.1  Midgut    1332   853.1  Hindgut    1342.8   1602.4  Malpighian Tubules    1107.9   1415.4  Fat Body    3546.2   605.2  Salivary Gland    1049.2   NA  Heart    2773.775   570.05  Trachea    NA   NA  VirginFemale Spermatheca    1364.8   NA  InseminatedFemale Spermatheca    1188.9   NA  Ovary    730.2   NA  Testis    358.9   NA  Male Accessory Gland    782.7   853.175  Carcass    2373.9 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_23
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030703 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9066-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for MSBP Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 MSBPGD3382 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of MSBP Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of MSBP Class Mutagen Stocks Known lesion MSBPGD3382 in vitro construct - RNAi in vitro construct - regulatory fusion 5 Yes MSBPKK102964 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{KK102964} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function
CV term Evidence References
ecdysone binding inferred from direct assay (Fujii-Taira et al., 2009)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
plasma membrane inferred from direct assay (Fujii-Taira et al., 2009, Khanna et al., 2010)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
heme binding inferred from electronic annotation with InterPro:IPR001199 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions MSBP allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 58896 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0030703 DroID - A comprehensive database of gene and protein interactions. • FBgn0030703 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32548
Orthologs
Genome-wide drosophilid orthologs	Dana\GF20506 Dere\GG19361 Dgri\GH10626 Dmoj\GI19802 Dper\GL14498 Dpse\GA21515 Dsec\GM22513 Dsim\GD24671 Dvir\GJ18097 Dwil\GK15245 Dyak\GE16009
Curated drosophilid orthologs	Dpse\GA21515   Dyak\GE16009
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL004195-PA Aedes aegypti (mosquito) AGAP000767-PA Anopheles gambiae (mosquito) XP_396615.2 Apis mellifera (honey bee) XP_001943385.1 Acyrthosiphon pisum (pea aphid) At5g52240.1 Arabidopsis thaliana (wall cress) 92805 Batrachochytrium dendrobatidis (chytrid fungus) 117123 Branchiostoma floridae (lancelet) 169276 Branchiostoma floridae (lancelet) XP_001896837.1 Brugia malayi (roundworm nematode) ENSBTAP00000026053 Bos taurus (bovine) CAL0005848 Candida albicans (a form of yeast) CN06476 Caenorhabditis brenneri (small nematode) CBP10372 Caenorhabditis briggsae (nematode) CE21027 Caenorhabditis elegans (worm) ENSCAFP00000027139 Canis familiaris (dog) JA16649 Caenorhabditis japonica (nematode) CMN188C Cyanidioschyzon merolae (red alga) cn03457 Cryptococcus neoformans (yeast-like fungus) CPIJ010629 Culex pipens (mosquito) ENSCPOP00000011115 Cavia porcellus (guinea pig) RP36409 Caenorhabditis remanei (nematode) 227540 Capitella spl (polychaete worm) DDB0252829 Dictyostelium discoideum (amoeba) DEHA2F14872g Debaryomyces Hansenii (yeast) 249965 Daphnia pulex (daphnia) ENSDARP00000070803 Danio rerio (zebra fish) ENSECAP00000007600 Equus caballus (horse) ENSGACP00000027497 Gymnopilus aculeatus (mushroom) ENSGALP00000037635 Gallus gallus (chicken) 74560 Hypsipyla robusta (cedar shoot borer) ENSP00000217971 Homo sapiens (human) ISCW018528-PA Ixodes scapularis (deer tick) 178036 Lottia gigantea (owl limpet) LmjF15.0190 Leishmania major (virus) LmjF36.6670 Leishmania major (virus) ENSMODP00000015415 Monodelphis domestica (gray opossum) ENSMMUP00000018994 Macaca mulatta (rhesus monkey) ENSMUSP00000073061 Mus musculus (house mouse) 87603 Nematostella vectensis (starlet anemone) XP_001607638.1 Nasonia vitripennis (wasp) ENSOANP00000013519 Ornithorynchus anatinus (platypus) ENSORLP00000017563 Oryzias latipes (japanese killifish) LOC_Os10g35850.1 Oryza sativa (asian rice) LOC_Os10g35870.1 Oryza sativa (asian rice) PHUM003037-PA Pediculus humanus (human body louse) PP24449 Pristionchus pacificus (nematode) 105006 Physcomitrella patens (moss) ENSPPYP00000023134 Pongo pygmaeus (orangutan) 733950 Populus trichocarpa (black cottonwood) ENSPTRP00000028229 Pan troglodytes (chimpanzee) ENSRNOP00000018796 Rattus norvegicus (norway rat) 147280 Sorghum bicolor (sorghum) Smp_093700 Schistosoma mansoni (trematode parasite) SPAC25B8.01 Schizosaccharomyces pombe (fission yeast) XP_783332.1 Strongylocentrotus purpuratus (purple sea urchin) 56832 Trichoplax adhaerens (metazoa) XP_975650.1 Tribolium castaneum (red flour beetle) ENSTNIP00000010452 Tetraodon nigroviridis (green spotted pufferfish) 260846 Thalassiosira pseudonana (marine diatom) ENSTRUP00000013364 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000048737 Xenopus tropicalis (frog) YALI0A20394g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB12964 NV12032 LH14958 ISCW018528 FBgn0068206 FBgn0218970 FBgn0217250 FBgn0205262 FBgn0195998 FBgn0177383 JGI_V11_249965 FBgn0081501 FBgn0152103 FBgn0142539 FBgn0118107 FBgn0111565 FBgn0097512 CPIJ010629 BGIBMGA001292 ACYPI010115 GB19351 AGAP000767 AAEL004195 PHUM086700 GLEAN_08221
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
VDRC	v5575 w1118 P{GD3382}v5575 v45182 w1118; P{GD3382}v45182 v45185 w1118; P{GD3382}v45185 v45183 w1118; P{GD3382}v45183/CyO v45184 w1118; P{GD3382}v45184/TM3
Genomic Clones ( 2 )
	BACR22H11 BACR32K23 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 65 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD12946
Other clones	DPiM_LD12946
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH26563 GM04345 LD03784 LD09318 LD14341 LP11976 RE72007 RE72059 RE73819 RE74330 RH39072
Other clones	1826 12852 13324 17781 53900 54024 57836 66676 144481 214287.30 CK01.55C.C10 CK01.85A.D3 Dmel_neb_008252_0689_0355 Dmel_neb_015583_0938_1282 EC30066 EC31876 EC34266 EC38517 EK044743 EK067414 EK105404 EK114115 EK125759 EK129959 EK147207 EK178041 EK178121 EK194457 EK250356 EP15816 ESG012b.TE_H10 ESG0110d.E21_A04 IP02445 RP003019958 RP003026510 RP003032549 RP003033300 RP003082655 RP003098657 RP003127940 RP003146796 RP003154068 RP003168921 RP003200986 RP003247722 RP003306406 RP003317551 RP003323707 RP003335393 RP003542386 RP003631185 RP003651965
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0030703 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32548
Antibody Information
	polyclonal (Fujii-Taira et al., 2009)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: MSBP CG9066 (Fujii-Taira et al., 2009)
Source for database merge of
Additional comments
Other Comments
	Shows particularly robust cycling of transcription in adult heads, as assessed by expression analysis using high density oligonucleotide arrays with probe generated during three 12-point time course experiments over the course of 6 days. (Claridge-Chang et al., 2001)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132859 NM_001169294 RefSeq (Proteins) • NP_573087 NP_001162765 DDBJ / EMBL / GenBank • AA438628 AAF48534 AAL28711 ACZ95300 AW942253 AY061163 Entrez Gene - A searchable database of RefSeq genes. • 32548 UniProtKB/TrEMBL • Q9VXM4
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Cytochrome b5 (IPR001199)
Linkouts
	BioGRID - A database of protein and genetic interactions • 58896 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0030703 DroID - A comprehensive database of gene and protein interactions. • FBgn0030703 DRSC - Results from RNAi screens. • FBgn0030703 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030703 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9066-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0030703 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32548 InParanoid A subset of ortholog calls from InParanoid. • AAEL004195-PA Aedes aegypti (mosquito) AGAP000767-PA Anopheles gambiae (mosquito) XP_396615.2 Apis mellifera (honey bee) XP_001943385.1 Acyrthosiphon pisum (pea aphid) At5g52240.1 Arabidopsis thaliana (wall cress) 92805 Batrachochytrium dendrobatidis (chytrid fungus) 117123 Branchiostoma floridae (lancelet) 169276 Branchiostoma floridae (lancelet) XP_001896837.1 Brugia malayi (roundworm nematode) ENSBTAP00000026053 Bos taurus (bovine) CAL0005848 Candida albicans (a form of yeast) CN06476 Caenorhabditis brenneri (small nematode) CBP10372 Caenorhabditis briggsae (nematode) CE21027 Caenorhabditis elegans (worm) ENSCAFP00000027139 Canis familiaris (dog) JA16649 Caenorhabditis japonica (nematode) CMN188C Cyanidioschyzon merolae (red alga) cn03457 Cryptococcus neoformans (yeast-like fungus) CPIJ010629 Culex pipens (mosquito) ENSCPOP00000011115 Cavia porcellus (guinea pig) RP36409 Caenorhabditis remanei (nematode) 227540 Capitella spl (polychaete worm) DDB0252829 Dictyostelium discoideum (amoeba) DEHA2F14872g Debaryomyces Hansenii (yeast) 249965 Daphnia pulex (daphnia) ENSDARP00000070803 Danio rerio (zebra fish) ENSECAP00000007600 Equus caballus (horse) ENSGACP00000027497 Gymnopilus aculeatus (mushroom) ENSGALP00000037635 Gallus gallus (chicken) 74560 Hypsipyla robusta (cedar shoot borer) ENSP00000217971 Homo sapiens (human) ISCW018528-PA Ixodes scapularis (deer tick) 178036 Lottia gigantea (owl limpet) LmjF15.0190 Leishmania major (virus) LmjF36.6670 Leishmania major (virus) ENSMODP00000015415 Monodelphis domestica (gray opossum) ENSMMUP00000018994 Macaca mulatta (rhesus monkey) ENSMUSP00000073061 Mus musculus (house mouse) 87603 Nematostella vectensis (starlet anemone) XP_001607638.1 Nasonia vitripennis (wasp) ENSOANP00000013519 Ornithorynchus anatinus (platypus) ENSORLP00000017563 Oryzias latipes (japanese killifish) LOC_Os10g35850.1 Oryza sativa (asian rice) LOC_Os10g35870.1 Oryza sativa (asian rice) PHUM003037-PA Pediculus humanus (human body louse) PP24449 Pristionchus pacificus (nematode) 105006 Physcomitrella patens (moss) ENSPPYP00000023134 Pongo pygmaeus (orangutan) 733950 Populus trichocarpa (black cottonwood) ENSPTRP00000028229 Pan troglodytes (chimpanzee) ENSRNOP00000018796 Rattus norvegicus (norway rat) 147280 Sorghum bicolor (sorghum) Smp_093700 Schistosoma mansoni (trematode parasite) SPAC25B8.01 Schizosaccharomyces pombe (fission yeast) XP_783332.1 Strongylocentrotus purpuratus (purple sea urchin) 56832 Trichoplax adhaerens (metazoa) XP_975650.1 Tribolium castaneum (red flour beetle) ENSTNIP00000010452 Tetraodon nigroviridis (green spotted pufferfish) 260846 Thalassiosira pseudonana (marine diatom) ENSTRUP00000013364 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000048737 Xenopus tropicalis (frog) YALI0A20394g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32548 modMine - Data generated by the modENCODE project. • FBgn0030703 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB12964 NV12032 LH14958 ISCW018528 FBgn0068206 FBgn0218970 FBgn0217250 FBgn0205262 FBgn0195998 FBgn0177383 JGI_V11_249965 FBgn0081501 FBgn0152103 FBgn0142539 FBgn0118107 FBgn0111565 FBgn0097512 CPIJ010629 BGIBMGA001292 ACYPI010115 GB19351 AGAP000767 AAEL004195 PHUM086700 GLEAN_08221
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	CG9066 (Fujii-Taira et al., 2009, Mack et al., 2006, Molnar et al., 2006, Khanna et al., 2010, Curtis et al., 2007, Keleman et al., 2009.8.5, Cammarato et al., 2011) dm_MSBP (Fujii-Taira et al., 2009) MSBP
Name Synonym	CG9066   membrane steroid binding protein   Membrane steroid binding protein (Khanna et al., 2010)
Secondary FlyBase IDs
References ( 17 )
Research paper	Willis et al., 2010, J. Insect Sci. 10: 66 Microarray Analysis of Juvenile Hormone Response in Drosophila melanogaster S2 cells. [FBrf0211402] Fujii-Taira et al., 2009, FEBS Lett. 583(4): 655--660 Suppression of the ecdysteroid-triggered growth arrest by a novel Drosophila membrane steroid binding protein. [FBrf0206741] Curtis et al., 2007, Genome Biol. 8(12): R262 Transcriptional profiling of MnSOD-mediated lifespan extension in Drosophila reveals a species-general network of aging and metabolic genes. [FBrf0205409] Mack et al., 2006, Proc. Natl. Acad. Sci. USA 103(27): 10358--10363 Mating-responsive genes in reproductive tissues of female Drosophila melanogaster. [FBrf0194111] Molnar et al., 2006, Genetics 174(3): 1635--1659 A gain-of-function screen identifying genes required for vein formation in the Drosophila melanogaster wing. [FBrf0195387] Apidianakis et al., 2005, Proc. Natl. Acad. Sci. USA 102(7): 2573--2578 Profiling early infection responses: Pseudomonas aeruginosa eludes host defenses by suppressing antimicrobial peptide gene expression. [FBrf0188443] Claridge-Chang et al., 2001, Neuron 32(4): 657--671 Circadian regulation of gene expression systems in the Drosophila head. [FBrf0141689]
Supplementary material	Cammarato et al., 2011, PLoS ONE 6(4): Table S1. Proteins & Peptides. [FBrf0214682] Khanna et al., 2010, BMC Genomics 11(1): Towards a membrane proteome in Drosophila: a method for the isolation of plasma membrane. [FBrf0210975] Khanna et al., 2010, BMC Genomics 11(1): Towards a membrane proteome in Drosophila: a method for the isolation of plasma membrane. [FBrf0210978] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]