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Gene Dmel\CG9172

General Information
Symbol	Dmel\CG9172	Species	D. melanogaster
Name		Annotation symbol	CG9172
Feature type	protein_coding_gene	FlyBase ID	FBgn0030718
Gene Model Status	Current	Stock availability	4 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	14A5-14A5	Sequence location	X:15,879,506..15,880,841 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG9172 (FBgn0030718). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: NADH dehydrogenase activity; NADH dehydrogenase (ubiquinone) activity. There is experimental evidence that it is involved in the biological process: mitochondrial respiratory chain complex I assembly; determination of adult lifespan; response to reactive oxygen species. 4 alleles are reported. The phenotypes of these alleles are annotated with: trichogen cell; mesothoracic tergum. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: NADH-ubiquinone oxidoreductase, 20 Kd subunit; NADH:ubiquinone oxidoreductase-like, 20kDa subunit; [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of high expression. Peak expression observed at stages throughout embryogenesis, during early larval stages, during late pupal stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval fat body, adult ovary, adult testis. Comments on Affy2 ProbeSet: ProbeSet 1636029_s_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG9172. Gene sequence location is X:15879506..15880841.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 14A5-14A5   Limits computationally determined from genome sequence between P{EP}Gβ13FEP1071 and P{EP}EP1458&P{EP}EP1522
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG9172 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG9172-RA FBtr0074151  NM_132869   909   221 CG9172-RB FBtr0074152  NM_167476   897   221 CG9172-RC FBtr0340417     1282   221
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG9172-PA   FBpp0073949   24.6   221   10.16     NP_573097   AAF48552 CG9172-PB   FBpp0073950   24.6   221   10.16     NP_727921   AAN09378 CG9172-PC   FBpp0309363   24.6   221   10.16
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • NADH:ubiquinone oxidoreductase-like, 20kDa subunit (IPR006137) NADH-ubiquinone oxidoreductase, 20 Kd subunit (IPR006138) [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB (IPR014406) MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins • MTDROME09172
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA201658   AA440817   AA695710   AA698535   AA941078   AA941087   AA951154   AA990673   AE014298 AAF48552   AE014298 AAN09378   AK340036   AY061393 AAL28941   AY432138   AY439771   BF501675   BG633456   BI168918   BI228984   BI236876   BI239336   BI363265   BI366819   BI570522   BI585906   BI605816   BI616212   BI629319   BI630592   BI635640   BI636963   BI641182   BP548593   BP556009   BP559640   BP559641   BX026125   BX041891   BX043427   BX062220   BX063506   BX063760   BX068774   BX069464   CO177326   CO178961   CO186177   CO187370   CO299874   CO301232   CO308094   CO336338   CO337419   DQ910347   EC063244   EC066188   EC069660   EC217683   EC218662   EC222684   EC227153   EC234704   EC261420   EC264291   EC266308   EL876549   EL876550   EL879207   EL879312   EV580218   EV585538   EV599416   GH748222   GH749037   GH750705   GH751363   GH753779   GH754218   GH756261   GH756283   GH756408   GH758779   GH759506   GH760205   GH770185   GH770927   GH771230   GH772162   GH772732   GH773281   GH773612   GH775073   GH775104   GH775388   GH775763   GH776231   GH776915   GH777232   GH778641   GH779921   GH780724   GH781162   GH781206   GH782792   GH783928   GH784871   GH785119   GH785822   GH787295   GH790180   GH792945   GH793183   GH793346   GH793911   GH793991   GH795007   GH796561   GH796622   GH796915   GH798394   GH798488   GH798979   GH800460   GH800765   GH802172   GH802173   GH802863   GH805637   GH806494   GH807295   GH807748   GH810263   GH810769   GH813715   GH814488   GH815099   GH815744   GH818332   GH821646   GH822036   GH822997   GH823633   GH825106   GH825684   GH826309   GH826554   GH827544   GH828288   GH828503   GH829968   GH831562   GH832576   GH835156   GH835347   GH835459   GH836515   GH842670   GH842832   GH843787   GH843862   GH844730   GH845512   GH850933   GH853757   GH855537   GH855563   GH857348   GH862341   GH862992   GH865118   GH865389   GH865452   GH866562   GH870684   GH871016   GH871472   GH871686   GH872536   GH873429   GH873751   GH873754   GH874405   GH875735   GH875741   GH876169   GH876224   GH876610   GH880522   GH881060   GH883052   GH883053   GH883815   GH887678   GH888240   GH888995   GH890053   GH892189   GH893010   GH894079   GH895043   GH896422   GH901544   GH902270   GH904342   GH904628   GH904729   GH904899   GH909900   GH909932   GH910447   GH911100   GH913862   GH917205   GH918080   GH918274   GH918308   GH919596   GH919641   GH920623   GH920752   GH921296   GH921308   GH922024   GH922790   GH922798   GH923321   GH924950   GH925460   GH925534   GH925899   GH928150   GH928487   GH928739   GH930462   GH931398   GH932839   GH933634   GH933786   GH935795   GH936317   GH937522   GH938822   GH939237   GH939238   GH939284   GH939564   GH939605   GH939789   GH940729   GH941054
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VXK7
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | faint & ubiquitous   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | faint & ubiquitous   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 13 -- 16   dorsal pharyngeal muscle   (Fisher et al., 2012) embryonic anal pad   (Fisher et al., 2012) embryonic hindgut   (Fisher et al., 2012) embryonic Malpighian tubule   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval muscle system   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval fat body, adult ovary, adult testis. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    592.75 Larval Midgut    724.5 Larval Hindgut    932.4 Larval Malpighian Tubules    626.8 Larval Fat Body    358.6 Larval Salivary Gland    715 Larval Trachea    781.35 Larval Carcass    898.025 Adult Head    1316.2 Adult Eye    1877.8 Adult Brain    1066.6 Adult Thoracic-Abdominal Ganglion    1344.9 Adult Crop    939.9 Adult Midgut    1087.3 Adult Hindgut    1560.2 Adult Malpighian Tubules    1064.3 Adult Fat Body    1198.7 Adult Salivary Gland    1035.1 Adult Heart    1526.125 Adult VirginFemale Spermatheca    952.2 Adult InseminatedFemale Spermatheca    865.1 Adult Ovary    466.6 Adult Testis    149 Adult Male Accessory Gland    601.1 Adult Carcass    2425.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (592.75) Larval Midgut  (724.5) Larval Hindgut  (932.4) Larval Malpighian Tubules  (626.8) Larval Fat Body    358.6 Larval Salivary Gland  (715) Larval Trachea  (781.35) Larval Carcass  (898.025) Adult Head  (1316.2) Adult Eye  (1877.8) Adult Brain  (1066.6) Adult Thoracic-Abdominal Ganglion  (1344.9) Adult Crop  (939.9) Adult Midgut  (1087.3) Adult Hindgut  (1560.2) Adult Malpighian Tubules  (1064.3) Adult Fat Body  (1198.7) Adult Salivary Gland  (1035.1) Adult Heart  (1526.125) Adult VirginFemale Spermatheca  (952.2) Adult InseminatedFemale Spermatheca  (865.1) Adult Ovary    466.6 Adult Testis    149 Adult Male Accessory Gland  (601.1) Adult Carcass  (2425.9) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    592.75 Larval Midgut    724.5 Larval Hindgut    932.4 Larval Malpighian Tubules    626.8 Larval Fat Body    358.6 Larval Salivary Gland    715 Larval Trachea    781.35 Larval Carcass    898.025 Adult Head  (1316.2) Adult Eye  (1877.8) Adult Brain  1066.6 Adult Thoracic-Abdominal Ganglion  (1344.9) Adult Crop    939.9 Adult Midgut  (1087.3) Adult Hindgut  (1560.2) Adult Malpighian Tubules  1064.3 Adult Fat Body  (1198.7) Adult Salivary Gland  1035.1 Adult Heart  (1526.125) Adult VirginFemale Spermatheca    952.2 Adult InseminatedFemale Spermatheca    865.1 Adult Ovary    466.6 Adult Testis    149 Adult Male Accessory Gland    601.1 Adult Carcass  (2425.9) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    592.75 Larval Midgut    724.5 Larval Hindgut    932.4 Larval Malpighian Tubules    626.8 Larval Fat Body    358.6 Larval Salivary Gland    715 Larval Trachea    781.35 Larval Carcass    898.025 Adult Head    1316.2 Adult Eye    1877.8 Adult Brain    1066.6 Adult Thoracic-Abdominal Ganglion    1344.9 Adult Crop    939.9 Adult Midgut    1087.3 Adult Hindgut    1560.2 Adult Malpighian Tubules    1064.3 Adult Fat Body    1198.7 Adult Salivary Gland    1035.1 Adult Heart    1526.125 Adult VirginFemale Spermatheca    952.2 Adult InseminatedFemale Spermatheca    865.1 Adult Ovary    466.6 Adult Testis    149 Adult Male Accessory Gland    601.1 Adult Carcass    2425.9 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    592.75 Larval Midgut    724.5 Larval Hindgut    932.4 Larval Malpighian Tubules    626.8 Larval Fat Body    358.6 Larval Salivary Gland    715 Larval Trachea    781.35 Larval Carcass    898.025 Adult Head    1316.2 Adult Eye    1877.8 Adult Brain    1066.6 Adult Thoracic-Abdominal Ganglion    1344.9 Adult Crop    939.9 Adult Midgut    1087.3 Adult Hindgut    1560.2 Adult Malpighian Tubules    1064.3 Adult Fat Body    1198.7 Adult Salivary Gland    1035.1 Adult Heart    1526.125 Adult VirginFemale Spermatheca    952.2 Adult InseminatedFemale Spermatheca    865.1 Adult Ovary    466.6 Adult Testis    149 Adult Male Accessory Gland    601.1 Adult Carcass    2425.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  592.75 Larval Midgut  724.5 Larval Hindgut  (932.4) Larval Malpighian Tubules  626.8 Larval Fat Body    358.6 Larval Salivary Gland  715 Larval Trachea  781.35 Larval Carcass  (898.025) Adult Head  (1316.2) Adult Eye  (1877.8) Adult Brain  (1066.6) Adult Thoracic-Abdominal Ganglion  (1344.9) Adult Crop  (939.9) Adult Midgut  (1087.3) Adult Hindgut  (1560.2) Adult Malpighian Tubules  (1064.3) Adult Fat Body  (1198.7) Adult Salivary Gland  (1035.1) Adult Heart  (1526.125) Adult VirginFemale Spermatheca  (952.2) Adult InseminatedFemale Spermatheca  (865.1) Adult Ovary    466.6 Adult Testis    149 Adult Male Accessory Gland  601.1 Adult Carcass  (2425.9) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    592.75 Larval Midgut    724.5 Larval Hindgut    932.4 Larval Malpighian Tubules    626.8 Larval Fat Body    358.6 Larval Salivary Gland    715 Larval Trachea    781.35 Larval Carcass    898.025 Adult Head  1316.2 Adult Eye  (1877.8) Adult Brain  1066.6 Adult Thoracic-Abdominal Ganglion  1344.9 Adult Crop    939.9 Adult Midgut  1087.3 Adult Hindgut  1560.2 Adult Malpighian Tubules  1064.3 Adult Fat Body  1198.7 Adult Salivary Gland  1035.1 Adult Heart  1526.125 Adult VirginFemale Spermatheca    952.2 Adult InseminatedFemale Spermatheca    865.1 Adult Ovary    466.6 Adult Testis    149 Adult Male Accessory Gland    601.1 Adult Carcass  (2425.9) Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    592.75 Larval Midgut    724.5 Larval Hindgut    932.4 Larval Malpighian Tubules    626.8 Larval Fat Body    358.6 Larval Salivary Gland    715 Larval Trachea    781.35 Larval Carcass    898.025 Adult Head    1316.2 Adult Eye    1877.8 Adult Brain    1066.6 Adult Thoracic-Abdominal Ganglion    1344.9 Adult Crop    939.9 Adult Midgut    1087.3 Adult Hindgut    1560.2 Adult Malpighian Tubules    1064.3 Adult Fat Body    1198.7 Adult Salivary Gland    1035.1 Adult Heart    1526.125 Adult VirginFemale Spermatheca    952.2 Adult InseminatedFemale Spermatheca    865.1 Adult Ovary    466.6 Adult Testis    149 Adult Male Accessory Gland    601.1 Adult Carcass    2425.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    1316.2   NA  Eye    1877.8   NA  Brain    1066.6   592.75  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    1344.9   NA  Crop    939.9   724.5  Midgut    1087.3   932.4  Hindgut    1560.2   626.8  Malpighian Tubules    1064.3   358.6  Fat Body    1198.7   715  Salivary Gland    1035.1   NA  Heart    1526.125   781.35  Trachea    NA   NA  VirginFemale Spermatheca    952.2   NA  InseminatedFemale Spermatheca    865.1   NA  Ovary    466.6   NA  Testis    149   NA  Male Accessory Gland    601.1   898.025  Carcass    2425.9 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    39 central nervous system, larvae L3    22 central nervous system, pupae P8    23 head, virgin 1-day female    73 head, virgin 4-day female    50 head, virgin 20-day female    58 head, mated 1-day female    50 head, mated 4-day female    34 head, mated 20-day female    42 head, mated 1-day male    84 head, mated 4-day male    54 head, mated 20-day male    63 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    27 digestive system, 1-day adult    46 digestive system, 4-day adult    29 digestive system, 20-day adult    30 fat body, larvae L3 wandering    8 fat body, white prepupae    10 fat body, pupae P8    24 carcass, larvae L3 wandering    20 carcass, 1-day adult    129 carcass, 4-day adult    78 carcass, 20-day adult    97 ovary, virgin 4-day female    32 ovary, mated 4-day female    23 testis, mated 4-day male    20 accessory gland, mated 4-day male    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (39) central nervous system, larvae L3    22 central nervous system, pupae P8    23 head, virgin 1-day female  (73) head, virgin 4-day female  (50) head, virgin 20-day female  (58) head, mated 1-day female  (50) head, mated 4-day female  (34) head, mated 20-day female  (42) head, mated 1-day male  (84) head, mated 4-day male  (54) head, mated 20-day male  (63) salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering  (27) digestive system, 1-day adult  (46) digestive system, 4-day adult  (29) digestive system, 20-day adult  (30) fat body, larvae L3 wandering    8 fat body, white prepupae    10 fat body, pupae P8    24 carcass, larvae L3 wandering    20 carcass, 1-day adult  (129) carcass, 4-day adult  (78) carcass, 20-day adult  (97) ovary, virgin 4-day female  (32) ovary, mated 4-day female    23 testis, mated 4-day male    20 accessory gland, mated 4-day male    22 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    39 central nervous system, larvae L3    22 central nervous system, pupae P8    23 head, virgin 1-day female    73 head, virgin 4-day female    50 head, virgin 20-day female    58 head, mated 1-day female    50 head, mated 4-day female    34 head, mated 20-day female    42 head, mated 1-day male    84 head, mated 4-day male    54 head, mated 20-day male    63 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    27 digestive system, 1-day adult    46 digestive system, 4-day adult    29 digestive system, 20-day adult    30 fat body, larvae L3 wandering    8 fat body, white prepupae    10 fat body, pupae P8    24 carcass, larvae L3 wandering    20 carcass, 1-day adult  (129) carcass, 4-day adult    78 carcass, 20-day adult    97 ovary, virgin 4-day female    32 ovary, mated 4-day female    23 testis, mated 4-day male    20 accessory gland, mated 4-day male    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    39 central nervous system, larvae L3    22 central nervous system, pupae P8    23 head, virgin 1-day female    73 head, virgin 4-day female    50 head, virgin 20-day female    58 head, mated 1-day female    50 head, mated 4-day female    34 head, mated 20-day female    42 head, mated 1-day male    84 head, mated 4-day male    54 head, mated 20-day male    63 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    27 digestive system, 1-day adult    46 digestive system, 4-day adult    29 digestive system, 20-day adult    30 fat body, larvae L3 wandering    8 fat body, white prepupae    10 fat body, pupae P8    24 carcass, larvae L3 wandering    20 carcass, 1-day adult    129 carcass, 4-day adult    78 carcass, 20-day adult    97 ovary, virgin 4-day female    32 ovary, mated 4-day female    23 testis, mated 4-day male    20 accessory gland, mated 4-day male    22 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    39 central nervous system, larvae L3    22 central nervous system, pupae P8    23 head, virgin 1-day female    73 head, virgin 4-day female    50 head, virgin 20-day female    58 head, mated 1-day female    50 head, mated 4-day female    34 head, mated 20-day female    42 head, mated 1-day male    84 head, mated 4-day male    54 head, mated 20-day male    63 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    27 digestive system, 1-day adult    46 digestive system, 4-day adult    29 digestive system, 20-day adult    30 fat body, larvae L3 wandering    8 fat body, white prepupae    10 fat body, pupae P8    24 carcass, larvae L3 wandering    20 carcass, 1-day adult    129 carcass, 4-day adult    78 carcass, 20-day adult    97 ovary, virgin 4-day female    32 ovary, mated 4-day female    23 testis, mated 4-day male    20 accessory gland, mated 4-day male    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (39) central nervous system, larvae L3    22 central nervous system, pupae P8    23 head, virgin 1-day female  (73) head, virgin 4-day female  (50) head, virgin 20-day female  (58) head, mated 1-day female  (50) head, mated 4-day female  (34) head, mated 20-day female  (42) head, mated 1-day male  (84) head, mated 4-day male  (54) head, mated 20-day male  (63) salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering  27 digestive system, 1-day adult  (46) digestive system, 4-day adult  29 digestive system, 20-day adult  30 fat body, larvae L3 wandering    8 fat body, white prepupae    10 fat body, pupae P8    24 carcass, larvae L3 wandering    20 carcass, 1-day adult  (129) carcass, 4-day adult  (78) carcass, 20-day adult  (97) ovary, virgin 4-day female  32 ovary, mated 4-day female    23 testis, mated 4-day male    20 accessory gland, mated 4-day male    22 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    39 central nervous system, larvae L3    22 central nervous system, pupae P8    23 head, virgin 1-day female    73 head, virgin 4-day female    50 head, virgin 20-day female    58 head, mated 1-day female    50 head, mated 4-day female    34 head, mated 20-day female    42 head, mated 1-day male    84 head, mated 4-day male    54 head, mated 20-day male    63 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    27 digestive system, 1-day adult    46 digestive system, 4-day adult    29 digestive system, 20-day adult    30 fat body, larvae L3 wandering    8 fat body, white prepupae    10 fat body, pupae P8    24 carcass, larvae L3 wandering    20 carcass, 1-day adult  129 carcass, 4-day adult    78 carcass, 20-day adult    97 ovary, virgin 4-day female    32 ovary, mated 4-day female    23 testis, mated 4-day male    20 accessory gland, mated 4-day male    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    39 central nervous system, larvae L3    22 central nervous system, pupae P8    23 head, virgin 1-day female    73 head, virgin 4-day female    50 head, virgin 20-day female    58 head, mated 1-day female    50 head, mated 4-day female    34 head, mated 20-day female    42 head, mated 1-day male    84 head, mated 4-day male    54 head, mated 20-day male    63 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    16 digestive system, larvae L3 wandering    27 digestive system, 1-day adult    46 digestive system, 4-day adult    29 digestive system, 20-day adult    30 fat body, larvae L3 wandering    8 fat body, white prepupae    10 fat body, pupae P8    24 carcass, larvae L3 wandering    20 carcass, 1-day adult    129 carcass, 4-day adult    78 carcass, 20-day adult    97 ovary, virgin 4-day female    32 ovary, mated 4-day female    23 testis, mated 4-day male    20 accessory gland, mated 4-day male    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of high expression. Peak expression observed at stages throughout embryogenesis, during early larval stages, during late pupal stages, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    83 embryo 02-04hr    100 embryo 04-06hr    78 embryo 06-08hr    80 embryo 08-10hr    89 embryo 10-12hr    115 embryo 12-14hr    82 embryo 14-16hr    146 embryo 16-18hr    142 embryo 18-20hr    141 embryo 20-22hr    141 embryo 22-24hr    141 larva L1    196 larva L2    161 larva L3 12hr old    143 larva L3 puffstage 1-2    79 larva L3 puffstage 3-6    55 larva L3 puffstage 7-9    55 white prepupae new    50 white prepupae 12hr    46 white prepupae 24hr    51 pupae 2d postWPP    76 pupae 3d postWPP    183 pupae 4d postWPP    331 adult male 01day    262 adult male 05day    247 adult male 30day    175 adult female 01day    298 adult female 05day    110 adult female 30day    91 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (83) embryo 02-04hr  (100) embryo 04-06hr  (78) embryo 06-08hr  (80) embryo 08-10hr  (89) embryo 10-12hr  (115) embryo 12-14hr  (82) embryo 14-16hr  (146) embryo 16-18hr  (142) embryo 18-20hr  (141) embryo 20-22hr  (141) embryo 22-24hr  (141) larva L1  (196) larva L2  (161) larva L3 12hr old  (143) larva L3 puffstage 1-2  (79) larva L3 puffstage 3-6  (55) larva L3 puffstage 7-9  (55) white prepupae new  (50) white prepupae 12hr  (46) white prepupae 24hr  (51) pupae 2d postWPP  (76) pupae 3d postWPP  (183) pupae 4d postWPP  (331) adult male 01day  (262) adult male 05day  (247) adult male 30day  (175) adult female 01day  (298) adult female 05day  (110) adult female 30day  (91) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    83 embryo 02-04hr    100 embryo 04-06hr    78 embryo 06-08hr    80 embryo 08-10hr    89 embryo 10-12hr  (115) embryo 12-14hr    82 embryo 14-16hr  (146) embryo 16-18hr  (142) embryo 18-20hr  (141) embryo 20-22hr  (141) embryo 22-24hr  (141) larva L1  (196) larva L2  (161) larva L3 12hr old  (143) larva L3 puffstage 1-2    79 larva L3 puffstage 3-6    55 larva L3 puffstage 7-9    55 white prepupae new    50 white prepupae 12hr    46 white prepupae 24hr    51 pupae 2d postWPP    76 pupae 3d postWPP  (183) pupae 4d postWPP  (331) adult male 01day  (262) adult male 05day  (247) adult male 30day  (175) adult female 01day  (298) adult female 05day  (110) adult female 30day    91 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    83 embryo 02-04hr    100 embryo 04-06hr    78 embryo 06-08hr    80 embryo 08-10hr    89 embryo 10-12hr    115 embryo 12-14hr    82 embryo 14-16hr    146 embryo 16-18hr    142 embryo 18-20hr    141 embryo 20-22hr    141 embryo 22-24hr    141 larva L1    196 larva L2    161 larva L3 12hr old    143 larva L3 puffstage 1-2    79 larva L3 puffstage 3-6    55 larva L3 puffstage 7-9    55 white prepupae new    50 white prepupae 12hr    46 white prepupae 24hr    51 pupae 2d postWPP    76 pupae 3d postWPP    183 pupae 4d postWPP    331 adult male 01day    262 adult male 05day    247 adult male 30day    175 adult female 01day    298 adult female 05day    110 adult female 30day    91 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    83 embryo 02-04hr    100 embryo 04-06hr    78 embryo 06-08hr    80 embryo 08-10hr    89 embryo 10-12hr    115 embryo 12-14hr    82 embryo 14-16hr    146 embryo 16-18hr    142 embryo 18-20hr    141 embryo 20-22hr    141 embryo 22-24hr    141 larva L1    196 larva L2    161 larva L3 12hr old    143 larva L3 puffstage 1-2    79 larva L3 puffstage 3-6    55 larva L3 puffstage 7-9    55 white prepupae new    50 white prepupae 12hr    46 white prepupae 24hr    51 pupae 2d postWPP    76 pupae 3d postWPP    183 pupae 4d postWPP    331 adult male 01day    262 adult male 05day    247 adult male 30day    175 adult female 01day    298 adult female 05day    110 adult female 30day    91 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (83) embryo 02-04hr  (100) embryo 04-06hr  (78) embryo 06-08hr  (80) embryo 08-10hr  (89) embryo 10-12hr  (115) embryo 12-14hr  (82) embryo 14-16hr  (146) embryo 16-18hr  (142) embryo 18-20hr  (141) embryo 20-22hr  (141) embryo 22-24hr  (141) larva L1  (196) larva L2  (161) larva L3 12hr old  (143) larva L3 puffstage 1-2  (79) larva L3 puffstage 3-6  (55) larva L3 puffstage 7-9  (55) white prepupae new  (50) white prepupae 12hr  (46) white prepupae 24hr  (51) pupae 2d postWPP  (76) pupae 3d postWPP  (183) pupae 4d postWPP  (331) adult male 01day  (262) adult male 05day  (247) adult male 30day  (175) adult female 01day  (298) adult female 05day  (110) adult female 30day  (91) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    83 embryo 02-04hr    100 embryo 04-06hr    78 embryo 06-08hr    80 embryo 08-10hr    89 embryo 10-12hr  115 embryo 12-14hr    82 embryo 14-16hr  (146) embryo 16-18hr  142 embryo 18-20hr  141 embryo 20-22hr  141 embryo 22-24hr  141 larva L1  (196) larva L2  (161) larva L3 12hr old  143 larva L3 puffstage 1-2    79 larva L3 puffstage 3-6    55 larva L3 puffstage 7-9    55 white prepupae new    50 white prepupae 12hr    46 white prepupae 24hr    51 pupae 2d postWPP    76 pupae 3d postWPP  (183) pupae 4d postWPP  (331) adult male 01day  (262) adult male 05day  (247) adult male 30day  (175) adult female 01day  (298) adult female 05day  110 adult female 30day    91 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    83 embryo 02-04hr    100 embryo 04-06hr    78 embryo 06-08hr    80 embryo 08-10hr    89 embryo 10-12hr    115 embryo 12-14hr    82 embryo 14-16hr    146 embryo 16-18hr    142 embryo 18-20hr    141 embryo 20-22hr    141 embryo 22-24hr    141 larva L1    196 larva L2    161 larva L3 12hr old    143 larva L3 puffstage 1-2    79 larva L3 puffstage 3-6    55 larva L3 puffstage 7-9    55 white prepupae new    50 white prepupae 12hr    46 white prepupae 24hr    51 pupae 2d postWPP    76 pupae 3d postWPP    183 pupae 4d postWPP    331 adult male 01day    262 adult male 05day    247 adult male 30day    175 adult female 01day    298 adult female 05day    110 adult female 30day    91 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    69 embryonic 1182-4H    44 embryonic GM2    42 embryonic Kc167    60 embryonic S1    112 embryonic S3    58 leg disc CME L1    33 wing disc CME-W2    44 wing disc ML-DmD8    54 wing disc ML-DmD9    60 wing disc ML-DmD16-c3    32 wing disc ML-DmD21    76 wing disc ML-DmD32    34 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    76 antennal disc ML-DmD20-c5    50 mixed discs ML-DmD4-c1    28 CNS ML-DmBG1-c1    38 CNS ML-DmBG2-c2    27 tumorous blood cells mbn2    43 ovary fGS/OSS    25 ovary OSC    29 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (58) Schneider line 2 Sg4  (69) embryonic 1182-4H  (44) embryonic GM2  (42) embryonic Kc167  (60) embryonic S1  (112) embryonic S3  (58) leg disc CME L1  (33) wing disc CME-W2  (44) wing disc ML-DmD8  (54) wing disc ML-DmD9  (60) wing disc ML-DmD16-c3  (32) wing disc ML-DmD21  (76) wing disc ML-DmD32  (34) haltere disc ML-DmD17-c3  (56) eye-antennal disc ML-DmD11  (76) antennal disc ML-DmD20-c5  (50) mixed discs ML-DmD4-c1  (28) CNS ML-DmBG1-c1  (38) CNS ML-DmBG2-c2  (27) tumorous blood cells mbn2  (43) ovary fGS/OSS    25 ovary OSC  (29) ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    69 embryonic 1182-4H    44 embryonic GM2    42 embryonic Kc167    60 embryonic S1  (112) embryonic S3    58 leg disc CME L1    33 wing disc CME-W2    44 wing disc ML-DmD8    54 wing disc ML-DmD9    60 wing disc ML-DmD16-c3    32 wing disc ML-DmD21    76 wing disc ML-DmD32    34 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    76 antennal disc ML-DmD20-c5    50 mixed discs ML-DmD4-c1    28 CNS ML-DmBG1-c1    38 CNS ML-DmBG2-c2    27 tumorous blood cells mbn2    43 ovary fGS/OSS    25 ovary OSC    29 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    69 embryonic 1182-4H    44 embryonic GM2    42 embryonic Kc167    60 embryonic S1    112 embryonic S3    58 leg disc CME L1    33 wing disc CME-W2    44 wing disc ML-DmD8    54 wing disc ML-DmD9    60 wing disc ML-DmD16-c3    32 wing disc ML-DmD21    76 wing disc ML-DmD32    34 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    76 antennal disc ML-DmD20-c5    50 mixed discs ML-DmD4-c1    28 CNS ML-DmBG1-c1    38 CNS ML-DmBG2-c2    27 tumorous blood cells mbn2    43 ovary fGS/OSS    25 ovary OSC    29 ovary OSS    11 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    69 embryonic 1182-4H    44 embryonic GM2    42 embryonic Kc167    60 embryonic S1    112 embryonic S3    58 leg disc CME L1    33 wing disc CME-W2    44 wing disc ML-DmD8    54 wing disc ML-DmD9    60 wing disc ML-DmD16-c3    32 wing disc ML-DmD21    76 wing disc ML-DmD32    34 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    76 antennal disc ML-DmD20-c5    50 mixed discs ML-DmD4-c1    28 CNS ML-DmBG1-c1    38 CNS ML-DmBG2-c2    27 tumorous blood cells mbn2    43 ovary fGS/OSS    25 ovary OSC    29 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (58) Schneider line 2 Sg4  (69) embryonic 1182-4H  (44) embryonic GM2  (42) embryonic Kc167  (60) embryonic S1  (112) embryonic S3  (58) leg disc CME L1  (33) wing disc CME-W2  (44) wing disc ML-DmD8  (54) wing disc ML-DmD9  (60) wing disc ML-DmD16-c3  32 wing disc ML-DmD21  (76) wing disc ML-DmD32  (34) haltere disc ML-DmD17-c3  (56) eye-antennal disc ML-DmD11  (76) antennal disc ML-DmD20-c5  (50) mixed discs ML-DmD4-c1  28 CNS ML-DmBG1-c1  (38) CNS ML-DmBG2-c2  27 tumorous blood cells mbn2  (43) ovary fGS/OSS    25 ovary OSC  29 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    69 embryonic 1182-4H    44 embryonic GM2    42 embryonic Kc167    60 embryonic S1  112 embryonic S3    58 leg disc CME L1    33 wing disc CME-W2    44 wing disc ML-DmD8    54 wing disc ML-DmD9    60 wing disc ML-DmD16-c3    32 wing disc ML-DmD21    76 wing disc ML-DmD32    34 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    76 antennal disc ML-DmD20-c5    50 mixed discs ML-DmD4-c1    28 CNS ML-DmBG1-c1    38 CNS ML-DmBG2-c2    27 tumorous blood cells mbn2    43 ovary fGS/OSS    25 ovary OSC    29 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    69 embryonic 1182-4H    44 embryonic GM2    42 embryonic Kc167    60 embryonic S1    112 embryonic S3    58 leg disc CME L1    33 wing disc CME-W2    44 wing disc ML-DmD8    54 wing disc ML-DmD9    60 wing disc ML-DmD16-c3    32 wing disc ML-DmD21    76 wing disc ML-DmD32    34 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    76 antennal disc ML-DmD20-c5    50 mixed discs ML-DmD4-c1    28 CNS ML-DmBG1-c1    38 CNS ML-DmBG2-c2    27 tumorous blood cells mbn2    43 ovary fGS/OSS    25 ovary OSC    29 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    22 cold shock, 4-day adult    17 heat shock, 4-day adult    57 Cadmium 50 mM 6 hrs, larvae L3    64 Cadmium 50 mM 12 hrs, larvae L3    51 Cadmium 50 mM 48 hrs, 4-day adult    50 Cadmium 100 mM 48 hrs, 4-day adult    42 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    17 Zinc 5 mM 12 hrs, larvae L3    24 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    69 Ethanol 5% 3 hrs, larvae L3    78 Ethanol 10% 3 hrs, larvae L3    67 Caffeine 1.5 mg/ml 4 hrs, larvae L3    71 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    44 Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult    72 Paraquat 10 mM 48 hrs, 4-day adult    72 Rotenone 2 μg 12 hrs, larvae L3    90 Rotenone 8 μg 12 hrs, larvae L3    108 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    22 cold shock, 4-day adult    17 heat shock, 4-day adult  (57) Cadmium 50 mM 6 hrs, larvae L3  (64) Cadmium 50 mM 12 hrs, larvae L3  (51) Cadmium 50 mM 48 hrs, 4-day adult  (50) Cadmium 100 mM 48 hrs, 4-day adult  (42) Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    17 Zinc 5 mM 12 hrs, larvae L3    24 Zinc 4.5 mM 48 hrs, 4-day adult  (35) Ethanol 2.5% 3 hrs, larvae L3  (69) Ethanol 5% 3 hrs, larvae L3  (78) Ethanol 10% 3 hrs, larvae L3  (67) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (71) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (44) Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult  (72) Paraquat 10 mM 48 hrs, 4-day adult  (72) Rotenone 2 μg 12 hrs, larvae L3  (90) Rotenone 8 μg 12 hrs, larvae L3  (108) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    22 cold shock, 4-day adult    17 heat shock, 4-day adult    57 Cadmium 50 mM 6 hrs, larvae L3    64 Cadmium 50 mM 12 hrs, larvae L3    51 Cadmium 50 mM 48 hrs, 4-day adult    50 Cadmium 100 mM 48 hrs, 4-day adult    42 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    17 Zinc 5 mM 12 hrs, larvae L3    24 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    69 Ethanol 5% 3 hrs, larvae L3    78 Ethanol 10% 3 hrs, larvae L3    67 Caffeine 1.5 mg/ml 4 hrs, larvae L3    71 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    44 Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult    72 Paraquat 10 mM 48 hrs, 4-day adult    72 Rotenone 2 μg 12 hrs, larvae L3    90 Rotenone 8 μg 12 hrs, larvae L3  (108) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    22 cold shock, 4-day adult    17 heat shock, 4-day adult    57 Cadmium 50 mM 6 hrs, larvae L3    64 Cadmium 50 mM 12 hrs, larvae L3    51 Cadmium 50 mM 48 hrs, 4-day adult    50 Cadmium 100 mM 48 hrs, 4-day adult    42 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    17 Zinc 5 mM 12 hrs, larvae L3    24 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    69 Ethanol 5% 3 hrs, larvae L3    78 Ethanol 10% 3 hrs, larvae L3    67 Caffeine 1.5 mg/ml 4 hrs, larvae L3    71 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    44 Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult    72 Paraquat 10 mM 48 hrs, 4-day adult    72 Rotenone 2 μg 12 hrs, larvae L3    90 Rotenone 8 μg 12 hrs, larvae L3    108 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    22 cold shock, 4-day adult    17 heat shock, 4-day adult    57 Cadmium 50 mM 6 hrs, larvae L3    64 Cadmium 50 mM 12 hrs, larvae L3    51 Cadmium 50 mM 48 hrs, 4-day adult    50 Cadmium 100 mM 48 hrs, 4-day adult    42 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    17 Zinc 5 mM 12 hrs, larvae L3    24 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    69 Ethanol 5% 3 hrs, larvae L3    78 Ethanol 10% 3 hrs, larvae L3    67 Caffeine 1.5 mg/ml 4 hrs, larvae L3    71 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    44 Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult    72 Paraquat 10 mM 48 hrs, 4-day adult    72 Rotenone 2 μg 12 hrs, larvae L3    90 Rotenone 8 μg 12 hrs, larvae L3    108 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    22 cold shock, 4-day adult    17 heat shock, 4-day adult  (57) Cadmium 50 mM 6 hrs, larvae L3  (64) Cadmium 50 mM 12 hrs, larvae L3  (51) Cadmium 50 mM 48 hrs, 4-day adult  (50) Cadmium 100 mM 48 hrs, 4-day adult  (42) Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    17 Zinc 5 mM 12 hrs, larvae L3    24 Zinc 4.5 mM 48 hrs, 4-day adult  (35) Ethanol 2.5% 3 hrs, larvae L3  (69) Ethanol 5% 3 hrs, larvae L3  (78) Ethanol 10% 3 hrs, larvae L3  (67) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (71) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (44) Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult  (72) Paraquat 10 mM 48 hrs, 4-day adult  (72) Rotenone 2 μg 12 hrs, larvae L3  (90) Rotenone 8 μg 12 hrs, larvae L3  (108) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    22 cold shock, 4-day adult    17 heat shock, 4-day adult    57 Cadmium 50 mM 6 hrs, larvae L3    64 Cadmium 50 mM 12 hrs, larvae L3    51 Cadmium 50 mM 48 hrs, 4-day adult    50 Cadmium 100 mM 48 hrs, 4-day adult    42 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    17 Zinc 5 mM 12 hrs, larvae L3    24 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    69 Ethanol 5% 3 hrs, larvae L3    78 Ethanol 10% 3 hrs, larvae L3    67 Caffeine 1.5 mg/ml 4 hrs, larvae L3    71 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    44 Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult    72 Paraquat 10 mM 48 hrs, 4-day adult    72 Rotenone 2 μg 12 hrs, larvae L3    90 Rotenone 8 μg 12 hrs, larvae L3  108 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    22 cold shock, 4-day adult    17 heat shock, 4-day adult    57 Cadmium 50 mM 6 hrs, larvae L3    64 Cadmium 50 mM 12 hrs, larvae L3    51 Cadmium 50 mM 48 hrs, 4-day adult    50 Cadmium 100 mM 48 hrs, 4-day adult    42 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    17 Zinc 5 mM 12 hrs, larvae L3    24 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    69 Ethanol 5% 3 hrs, larvae L3    78 Ethanol 10% 3 hrs, larvae L3    67 Caffeine 1.5 mg/ml 4 hrs, larvae L3    71 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    44 Caffeine 25 mg/ml 48 hrs, 4-day adult    19 Paraquat 5 mM 48 hrs, 4-day adult    72 Paraquat 10 mM 48 hrs, 4-day adult    72 Rotenone 2 μg 12 hrs, larvae L3    90 Rotenone 8 μg 12 hrs, larvae L3    108 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_15 mE1_20_mRNA_expression_cluster_10
External Data & Images
Linkouts	BDGP expression data • LD31474 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030718 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9172-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG9172 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | larval stage, with Scer\GAL4da.G32 CG9172GD13310 lethal | larval stage | RU486 conditional, with Scer\GAL4αTub84B.Switch.PK CG9172GD13310 viable, with Scer\GAL4pnr-MD237 CG9172GD13310 Sterility Allele female semi-fertile | RU486 conditional, with Scer\GAL4αTub84B.Switch.PK CG9172GD13310 Other Phenotypes Allele long lived | female | RU486 conditional, with Scer\GAL4elav.Switch.PO CG9172GD13310 long lived | female | RU486 conditional, with Scer\GAL4αTub84B.Switch.PK CG9172GD13310 stress response defective | RU486 conditional, with Scer\GAL4αTub84B.Switch.PK CG9172GD13310 visible, with Scer\GAL4pnr-MD237 CG9172GD13310 Phenotype manifest in Allele mesothoracic tergum, with Scer\GAL4pnr-MD237 CG9172GD13310 trichogen cell, with Scer\GAL4pnr-MD237 CG9172GD13310
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG9172 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG9172 Class Mutagen Stocks Known lesion CG9172GD13310 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG9172GD17854 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG9172KK110115 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG9172NIG.9172R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD13310} NA P{GD17854} NA P{KK110115} NA P{NIG.9172R} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 9 unique terms )
Terms Based on Experimental Evidence ( 3 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
determination of adult lifespan inferred from mutant phenotype (Copeland et al., 2009) mitochondrial respiratory chain complex I assembly inferred from mutant phenotype (Copeland et al., 2009) response to reactive oxygen species inferred from mutant phenotype (Copeland et al., 2009)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 6 terms )
Molecular Function
CV term Evidence References
4 iron, 4 sulfur cluster binding inferred from electronic annotation with InterPro:IPR006137, InterPro:IPR006138, InterPro:IPR014406 (FlyBase Curators et al., 2004-) NADH dehydrogenase (ubiquinone) activity inferred from sequence or structural similarity with UniProtKB:P42026 (FlyBase, 1992-) NADH dehydrogenase activity inferred from sequence or structural similarity with UniProtKB:O75251 (Sardiello et al., 2003.6.11) quinone binding inferred from electronic annotation with InterPro:IPR006137, InterPro:IPR006138 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
mitochondrial electron transport, NADH to ubiquinone inferred from sequence or structural similarity with UniProtKB:O75251 (Sardiello et al., 2003.6.11)
Cellular Component
CV term Evidence References
mitochondrial respiratory chain complex I inferred from sequence or structural similarity with UniProtKB:O75251 (Sardiello et al., 2003.6.11) inferred from sequence or structural similarity with UniProtKB:P42026 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG9172 - ATPsyn-γ anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9172 - AnxB10 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) CG9172 - CG12909 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) CG9172 - CG1532 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9172 - CG2014 experimental knowledge based (Guruharsha et al., 2011) CG9172 - CG3214 experimental knowledge based (Guruharsha et al., 2011) CG9172 - CG6020 experimental knowledge based (Guruharsha et al., 2011) CG9172 - CG8680 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9172 - ND75 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9172 - P32 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG9172 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 58909 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0030718 DroID - A comprehensive database of gene and protein interactions. • FBgn0030718 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32565
Orthologs
OrthoDB Orthologs (39) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6FJ8W6 Dipteran inclusive ortholog search EOG632177 Insect inclusive ortholog search EOG6NVXGH Arthropod inclusive ortholog search EOG69GHZQ Metazoa inclusive ortholog search EOG6SNDH6
Orthologs in Drosophila Species (EOG6FJ8W6)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG9172     Drosophila simulans   Dsim\GD15767 Y   Drosophila sechellia   Dsec\GM11675 Y   Drosophila erecta   Dere\GG19352 Y   Drosophila yakuba   Dyak\GE15999 Y   Drosophila ananassae   Dana\GF19983 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA21592 Y   Drosophila persimilis   Dper\GL16625 Y   Drosophila willistoni   Dwil\GK17823 Y   Drosophila virilis   Dvir\GJ21650 Y   Drosophila mojavensis   Dmoj\GI18637 Y   Drosophila grimshawi   Dgri\GH21035 Y
Orthologs in non-Drosophila Dipterans (EOG632177)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL008072 Y Anopheles gambiae Malaria mosquito  Agam\AGAP000170 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ018869 Y
Orthologs in non-Dipteran Insects (EOG6NVXGH)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB48163 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG035203 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\nuoB Y Atta cephalotes Leafcutter ant  Acep\nuoB Y Camponotus floridanus Florida carpenter ant  Cflo\nuoB Y Harpegnathos saltator Jerdons jumping ant  Hsal\nuoB Y Linepithema humile Argentine ant  Lhum\LH22162 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB15629 Y Solenopsis invicta Red fire ant  Sinv\SINV16126 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI008241 Y Bombyx mori Silkmoth  Bmor\BGIBMGA005439 Y Pediculus humanus Human body louse  Phum\PHUM387810 Y Tribolium castaneum Red flour beetle  Tcas\TC006185 Y Tribolium castaneum Red flour beetle  Tcas\nuoB Y
Orthologs in non-Insect Arthropods (EOG69GHZQ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\ZNF853 Y Ixodes scapularis Deer tick  Isca\ISCW013042 Y
Orthologs in non-Arthropod Metazoa (EOG6SNDH6)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\nduf-7 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_016205gn Y Danio rerio Zebrafish  Drer\ndufs7 Y Xenopus tropicalis Western clawed frog  Xtro\ndufs7 Y Gallus gallus Domestic chicken  Ggal\NDUFS7 Y Mus musculus House mouse  Mmus\Ndufs7 Y Rattus norvegicus Norway rat  Rnor\Ndufs7 Y Homo sapiens Human  Hsap\NDUFS7 Y
Human Orthologs (1)
Gene OMIM HGNC Hsap\NDUFS7
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD15767 Drosophila sechellia Dsec\GM11675 Drosophila erecta Dere\GG19352 Drosophila yakuba Dyak\GE15999 Drosophila ananassae Dana\GF19983 Drosophila pseudoobscura pseudoobscura Dpse\GA21592 Drosophila persimilis Dper\GL16625 Drosophila willistoni Dwil\GK17823 Drosophila virilis Dvir\GJ21650 Drosophila mojavensis Dmoj\GI18637 Drosophila grimshawi Dgri\GH21035
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
VDRC	v101881 P{KK110115}VIE-260B v23256 w1118; P{GD13310}v23256 v23255 w1118; P{GD13310}v23255/TM3 v49897 w1118; P{GD17854}v49897/TM3
Genomic Clones ( 1 )
	BACR32K23 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 233 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD31474
Other clones	DPiM_LD31474
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT17068 GH27429 GM04340 HL04874 LD03951 LD15704 LD25032 LD25044 LD34486 RE09826 RE26664 RE33005 RE35804 RE48035 RE52438 RH02868 RH25607 RH46105 RH58164 RH59864 RH71793 SD17050 SD18820 SD24392
Other clones	50759 58266 64887 152938 166546 522007 557754 569086 CK01.23B.F5 CK01.65B.H2 CK01.73C.D12 Dmel_dig_002376_0685_1621 Dmel_dig_003896_0672_3444 Dmel_neb_013698_0915_1398 EK016701 EK028618 EK053161 EK058046 EK176819 EK180463 EK256626 EN12331 EN14521 FGH129D11 FGM238G06 FGM322A11 IP06491 IP09212 IP09312 RP003015283 RP003025534 RP003027220 RP003029521 RP003034888 RP003036801 RP003043129 RP003044013 RP003046420 RP003048218 RP003051939 RP003061573 RP003075428 RP003077836 RP003078638 RP003082629 RP003087160 RP003089458 RP003093279 RP003093842 RP003094060 RP003098292 RP003102250 RP003102472 RP003109103 RP003112319 RP003139116 RP003144897 RP003144946 RP003150048 RP003152290 RP003155082 RP003158800 RP003160349 RP003160718 RP003164589 RP003168962 RP003172212 RP003173452 RP003176127 RP003177530 RP003177777 RP003185082 RP003201170 RP003204655 RP003204819 RP003205287 RP003207212 RP003211333 RP003216382 RP003240364 RP003240427 RP003242826 RP003249113 RP003249871 RP003251924 RP003256694 RP003257588 RP003259779 RP003260537 RP003262164 RP003263041 RP003264892 RP003267958 RP003274929 RP003276950 RP003279352 RP003281653 RP003283825 RP003284909 RP003290054 RP003291168 RP003291905 RP003293631 RP003294198 RP003300210 RP003300733 RP003301562 RP003303543 RP003303956 RP003304113 RP003307155 RP003309020 RP003309552 RP003310385 RP003312736 RP003313186 RP003314543 RP003320747 RP003320932 RP003322376 RP003324237 RP003329169 RP003332843 RP003335024 RP003335983 RP003336068 RP003336143 RP003338133 RP003341921 RP003346391 RP003348155 RP003350802 RP003360065 RP003362463 RP003368236 RP003370015 RP003372329 RP003381965 RP003388649 RP003397612 RP003398458 RP003402899 RP003410804 RP003415901 RP003423554 RP003426513 RP003432401 RP003441744 RP003441749 RP003442140 RP003443458 RP003443540 RP003452890 RP003455804 RP003459552 RP003467349 RP003469341 RP003471099 RP003479791 RP003495737 RP003505964 RP003518114 RP003523106 RP003525643 RP003535761 RP003535970 RP003540495 RP003542561 RP003542971 RP003543251 RP003549791 RP003552364 RP003553772 RP003558461 RP003561132 RP003561786 RP003572843 RP003576698 RP003577039 RP003577872 RP003582245 RP003583251 RP003587477 RP003587838 RP003598648 RP003601495 RP003601501 RP003601828 RP003603335 RP003608525 RP003609368 RP003611381 RP003612846 RP003613748 RP003616654 RP003625822 RP003625891 RP003633841 RP003634557 RP003640261 RP003657939 RP003664574 RP003665840 RP003665913 RP003665941 RP003669381 RP003675342
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0030718 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32565
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	The CG2014 gene may have been derived from the CG9172 gene by retroposition. (Dai et al., 2006)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132869 NM_167476 RefSeq (Proteins) • NP_573097 NP_727921 DDBJ / EMBL / GenBank • AA951154 AAF48552 AAL28941 AAN09378 AY061393 Entrez Gene - A searchable database of RefSeq genes. • 32565 UniProtKB/TrEMBL • Q9VXK7
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • NADH:ubiquinone oxidoreductase-like, 20kDa subunit (IPR006137) NADH-ubiquinone oxidoreductase, 20 Kd subunit (IPR006138) [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB (IPR014406) MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins • MTDROME09172 BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD31474
Linkouts
	BioGRID - A database of protein and genetic interactions • 58909 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0030718 DroID - A comprehensive database of gene and protein interactions. • FBgn0030718 DRSC - Results from RNAi screens. • FBgn0030718 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030718 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9172-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0030718 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32565 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32565 modMine - Data generated by the modENCODE project. • FBgn0030718
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	20 kDa (Kim et al., 2010) CG9172 (Dai et al., 2006, Porcelli et al., 2007, Tripoli et al., 2005, Gallach et al., 2010, Keleman et al., 2009.8.5, Copeland et al., 2009, Kim et al., 2010, Metta and Schlötterer, 2010, Cammarato et al., 2011, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym	NADH:ubiquinone oxidoreductase 20 kDa subunit (Tripoli et al., 2005) NADH ubiquinone oxidoreductase 20 kDa (Porcelli et al., 2007)
Secondary FlyBase IDs
References ( 25 )
Generate a list of	All references relating to this gene ( 25 )
List References by type	Research paper  ( 7 ) Supplementary material  ( 7 ) Personal communication to FlyBase  ( 6 ) FlyBase analysis  ( 1 ) Stock list  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...