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Gene Dmel\CG7556

General Information
Symbol	Dmel\CG7556	Species	D. melanogaster
Name		Annotation symbol	CG7556
Feature type	protein_coding_gene	FlyBase ID	FBgn0030990
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	18A5-18A5	Sequence location	X:19,071,030..19,073,988 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG7556 (FBgn0030990). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: chromatin binding; DNA binding. The biological processes in which it is involved are not known. 7 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: DnaJ domain; DnaJ domain, conserved site; Homeodomain-like; Myb-like domain; SANT domain; SANT/Myb domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 06-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval/adult salivary gland, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval trachea, adult female reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1626507_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG7556. Gene sequence location is X:19071030..19073988.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 18A5-18A5   Limits computationally determined from genome sequence between P{EP}CG7502EP1326 and P{EP}CG8051EP1550&P{EP}EP1300
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG7556 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG7556-RA FBtr0074697  NM_133126   2130   522
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG7556-PA   FBpp0074466   60.0   522   7.43     NP_573354   AAF48924
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • SANT/Myb domain (IPR001005) DnaJ domain (IPR001623) Homeodomain-like (IPR009057) DnaJ domain, conserved site (IPR018253) Myb-like domain (IPR017877) SANT domain (IPR017884)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA951289   AE014298 AAF48924   AI108494   AI134158   AI402078   AI517080   AI543191   AY119483 AAM50137   BF486310   BF494540   BG637266   BG640875   BI141793   BI164483   BI173444   BI215070   BI234420   BI235171   BI370733   BI371265   BI374760   BI563439   BI564265   BI574341   BI587928   BI592696   BI610665   BI621356   BI633555   BP556753   BP556754   CK604360   CO264334   CO266330   CO267427   CO268530   CO284252   CO292656   CO304749   CO315901   CO332098   CZ474078   EC067776   EC082501   EC083002   EC083832   EC084482   EC089674   EC203204   EC249765   EL887340   EL887380   EV577405
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VWL4
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 11 -- 12   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic/larval salivary gland   (Fisher et al., 2012) embryonic/larval salivary gland body   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval/adult salivary gland, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval trachea, adult female reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    147.825 Larval Midgut    254.1 Larval Hindgut    236.1 Larval Malpighian Tubules    193.1 Larval Fat Body    180 Larval Salivary Gland    1003.1 Larval Trachea    277.275 Larval Carcass    261.5 Adult Head    181.8 Adult Eye    101.425 Adult Brain    154.4 Adult Thoracic-Abdominal Ganglion    167.6 Adult Crop    245.3 Adult Midgut    306.2 Adult Hindgut    274.8 Adult Malpighian Tubules    206.6 Adult Fat Body    195.2 Adult Salivary Gland    905.4 Adult Heart    217 Adult VirginFemale Spermatheca    288 Adult InseminatedFemale Spermatheca    333.2 Adult Ovary    270.7 Adult Testis    80.9 Adult Male Accessory Gland    1120.2 Adult Carcass    207 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    147.825 Larval Midgut    254.1 Larval Hindgut    236.1 Larval Malpighian Tubules    193.1 Larval Fat Body    180 Larval Salivary Gland  (1003.1) Larval Trachea    277.275 Larval Carcass    261.5 Adult Head    181.8 Adult Eye    101.425 Adult Brain    154.4 Adult Thoracic-Abdominal Ganglion    167.6 Adult Crop    245.3 Adult Midgut    306.2 Adult Hindgut    274.8 Adult Malpighian Tubules    206.6 Adult Fat Body    195.2 Adult Salivary Gland  (905.4) Adult Heart    217 Adult VirginFemale Spermatheca    288 Adult InseminatedFemale Spermatheca    333.2 Adult Ovary    270.7 Adult Testis    80.9 Adult Male Accessory Gland  (1120.2) Adult Carcass    207 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    147.825 Larval Midgut    254.1 Larval Hindgut    236.1 Larval Malpighian Tubules    193.1 Larval Fat Body    180 Larval Salivary Gland  1003.1 Larval Trachea    277.275 Larval Carcass    261.5 Adult Head    181.8 Adult Eye    101.425 Adult Brain    154.4 Adult Thoracic-Abdominal Ganglion    167.6 Adult Crop    245.3 Adult Midgut    306.2 Adult Hindgut    274.8 Adult Malpighian Tubules    206.6 Adult Fat Body    195.2 Adult Salivary Gland    905.4 Adult Heart    217 Adult VirginFemale Spermatheca    288 Adult InseminatedFemale Spermatheca    333.2 Adult Ovary    270.7 Adult Testis    80.9 Adult Male Accessory Gland  (1120.2) Adult Carcass    207 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    147.825 Larval Midgut    254.1 Larval Hindgut    236.1 Larval Malpighian Tubules    193.1 Larval Fat Body    180 Larval Salivary Gland    1003.1 Larval Trachea    277.275 Larval Carcass    261.5 Adult Head    181.8 Adult Eye    101.425 Adult Brain    154.4 Adult Thoracic-Abdominal Ganglion    167.6 Adult Crop    245.3 Adult Midgut    306.2 Adult Hindgut    274.8 Adult Malpighian Tubules    206.6 Adult Fat Body    195.2 Adult Salivary Gland    905.4 Adult Heart    217 Adult VirginFemale Spermatheca    288 Adult InseminatedFemale Spermatheca    333.2 Adult Ovary    270.7 Adult Testis    80.9 Adult Male Accessory Gland    1120.2 Adult Carcass    207 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    147.825 Larval Midgut    254.1 Larval Hindgut    236.1 Larval Malpighian Tubules    193.1 Larval Fat Body    180 Larval Salivary Gland    1003.1 Larval Trachea    277.275 Larval Carcass    261.5 Adult Head    181.8 Adult Eye    101.425 Adult Brain    154.4 Adult Thoracic-Abdominal Ganglion    167.6 Adult Crop    245.3 Adult Midgut    306.2 Adult Hindgut    274.8 Adult Malpighian Tubules    206.6 Adult Fat Body    195.2 Adult Salivary Gland    905.4 Adult Heart    217 Adult VirginFemale Spermatheca    288 Adult InseminatedFemale Spermatheca    333.2 Adult Ovary    270.7 Adult Testis    80.9 Adult Male Accessory Gland    1120.2 Adult Carcass    207 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    147.825 Larval Midgut    254.1 Larval Hindgut    236.1 Larval Malpighian Tubules    193.1 Larval Fat Body    180 Larval Salivary Gland  (1003.1) Larval Trachea    277.275 Larval Carcass    261.5 Adult Head    181.8 Adult Eye    101.425 Adult Brain    154.4 Adult Thoracic-Abdominal Ganglion    167.6 Adult Crop    245.3 Adult Midgut    306.2 Adult Hindgut    274.8 Adult Malpighian Tubules    206.6 Adult Fat Body    195.2 Adult Salivary Gland  (905.4) Adult Heart    217 Adult VirginFemale Spermatheca    288 Adult InseminatedFemale Spermatheca    333.2 Adult Ovary    270.7 Adult Testis    80.9 Adult Male Accessory Gland  (1120.2) Adult Carcass    207 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    147.825 Larval Midgut    254.1 Larval Hindgut    236.1 Larval Malpighian Tubules    193.1 Larval Fat Body    180 Larval Salivary Gland  1003.1 Larval Trachea    277.275 Larval Carcass    261.5 Adult Head    181.8 Adult Eye    101.425 Adult Brain    154.4 Adult Thoracic-Abdominal Ganglion    167.6 Adult Crop    245.3 Adult Midgut    306.2 Adult Hindgut    274.8 Adult Malpighian Tubules    206.6 Adult Fat Body    195.2 Adult Salivary Gland    905.4 Adult Heart    217 Adult VirginFemale Spermatheca    288 Adult InseminatedFemale Spermatheca    333.2 Adult Ovary    270.7 Adult Testis    80.9 Adult Male Accessory Gland  1120.2 Adult Carcass    207 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    147.825 Larval Midgut    254.1 Larval Hindgut    236.1 Larval Malpighian Tubules    193.1 Larval Fat Body    180 Larval Salivary Gland    1003.1 Larval Trachea    277.275 Larval Carcass    261.5 Adult Head    181.8 Adult Eye    101.425 Adult Brain    154.4 Adult Thoracic-Abdominal Ganglion    167.6 Adult Crop    245.3 Adult Midgut    306.2 Adult Hindgut    274.8 Adult Malpighian Tubules    206.6 Adult Fat Body    195.2 Adult Salivary Gland    905.4 Adult Heart    217 Adult VirginFemale Spermatheca    288 Adult InseminatedFemale Spermatheca    333.2 Adult Ovary    270.7 Adult Testis    80.9 Adult Male Accessory Gland    1120.2 Adult Carcass    207 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    181.8   NA  Eye    101.425   NA  Brain    154.4   147.825  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    167.6   NA  Crop    245.3   254.1  Midgut    306.2   236.1  Hindgut    274.8   193.1  Malpighian Tubules    206.6   180  Fat Body    195.2   1003.1  Salivary Gland    905.4   NA  Heart    217   277.275  Trachea    NA   NA  VirginFemale Spermatheca    288   NA  InseminatedFemale Spermatheca    333.2   NA  Ovary    270.7   NA  Testis    80.9   NA  Male Accessory Gland    1120.2   261.5  Carcass    207 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    18 central nervous system, pupae P8    11 head, virgin 1-day female    13 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    10 head, mated 4-day female    16 head, mated 20-day female    17 head, mated 1-day male    9 head, mated 4-day male    17 head, mated 20-day male    20 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    27 digestive system, larvae L3 wandering    27 digestive system, 1-day adult    27 digestive system, 4-day adult    22 digestive system, 20-day adult    21 fat body, larvae L3 wandering    15 fat body, white prepupae    12 fat body, pupae P8    27 carcass, larvae L3 wandering    23 carcass, 1-day adult    15 carcass, 4-day adult    24 carcass, 20-day adult    21 ovary, virgin 4-day female    50 ovary, mated 4-day female    47 testis, mated 4-day male    51 accessory gland, mated 4-day male    54 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (31) central nervous system, larvae L3    18 central nervous system, pupae P8    11 head, virgin 1-day female    13 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    10 head, mated 4-day female    16 head, mated 20-day female    17 head, mated 1-day male    9 head, mated 4-day male    17 head, mated 20-day male    20 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae  (27) digestive system, larvae L3 wandering  (27) digestive system, 1-day adult  (27) digestive system, 4-day adult    22 digestive system, 20-day adult    21 fat body, larvae L3 wandering    15 fat body, white prepupae    12 fat body, pupae P8  (27) carcass, larvae L3 wandering    23 carcass, 1-day adult    15 carcass, 4-day adult    24 carcass, 20-day adult    21 ovary, virgin 4-day female  (50) ovary, mated 4-day female  (47) testis, mated 4-day male  (51) accessory gland, mated 4-day male  (54) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    18 central nervous system, pupae P8    11 head, virgin 1-day female    13 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    10 head, mated 4-day female    16 head, mated 20-day female    17 head, mated 1-day male    9 head, mated 4-day male    17 head, mated 20-day male    20 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    27 digestive system, larvae L3 wandering    27 digestive system, 1-day adult    27 digestive system, 4-day adult    22 digestive system, 20-day adult    21 fat body, larvae L3 wandering    15 fat body, white prepupae    12 fat body, pupae P8    27 carcass, larvae L3 wandering    23 carcass, 1-day adult    15 carcass, 4-day adult    24 carcass, 20-day adult    21 ovary, virgin 4-day female    50 ovary, mated 4-day female    47 testis, mated 4-day male    51 accessory gland, mated 4-day male    54 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    18 central nervous system, pupae P8    11 head, virgin 1-day female    13 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    10 head, mated 4-day female    16 head, mated 20-day female    17 head, mated 1-day male    9 head, mated 4-day male    17 head, mated 20-day male    20 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    27 digestive system, larvae L3 wandering    27 digestive system, 1-day adult    27 digestive system, 4-day adult    22 digestive system, 20-day adult    21 fat body, larvae L3 wandering    15 fat body, white prepupae    12 fat body, pupae P8    27 carcass, larvae L3 wandering    23 carcass, 1-day adult    15 carcass, 4-day adult    24 carcass, 20-day adult    21 ovary, virgin 4-day female    50 ovary, mated 4-day female    47 testis, mated 4-day male    51 accessory gland, mated 4-day male    54 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    18 central nervous system, pupae P8    11 head, virgin 1-day female    13 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    10 head, mated 4-day female    16 head, mated 20-day female    17 head, mated 1-day male    9 head, mated 4-day male    17 head, mated 20-day male    20 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    27 digestive system, larvae L3 wandering    27 digestive system, 1-day adult    27 digestive system, 4-day adult    22 digestive system, 20-day adult    21 fat body, larvae L3 wandering    15 fat body, white prepupae    12 fat body, pupae P8    27 carcass, larvae L3 wandering    23 carcass, 1-day adult    15 carcass, 4-day adult    24 carcass, 20-day adult    21 ovary, virgin 4-day female    50 ovary, mated 4-day female    47 testis, mated 4-day male    51 accessory gland, mated 4-day male    54 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  31 central nervous system, larvae L3    18 central nervous system, pupae P8    11 head, virgin 1-day female    13 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    10 head, mated 4-day female    16 head, mated 20-day female    17 head, mated 1-day male    9 head, mated 4-day male    17 head, mated 20-day male    20 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae  27 digestive system, larvae L3 wandering  27 digestive system, 1-day adult  27 digestive system, 4-day adult    22 digestive system, 20-day adult    21 fat body, larvae L3 wandering    15 fat body, white prepupae    12 fat body, pupae P8  27 carcass, larvae L3 wandering    23 carcass, 1-day adult    15 carcass, 4-day adult    24 carcass, 20-day adult    21 ovary, virgin 4-day female  (50) ovary, mated 4-day female  (47) testis, mated 4-day male  (51) accessory gland, mated 4-day male  (54) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    18 central nervous system, pupae P8    11 head, virgin 1-day female    13 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    10 head, mated 4-day female    16 head, mated 20-day female    17 head, mated 1-day male    9 head, mated 4-day male    17 head, mated 20-day male    20 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    27 digestive system, larvae L3 wandering    27 digestive system, 1-day adult    27 digestive system, 4-day adult    22 digestive system, 20-day adult    21 fat body, larvae L3 wandering    15 fat body, white prepupae    12 fat body, pupae P8    27 carcass, larvae L3 wandering    23 carcass, 1-day adult    15 carcass, 4-day adult    24 carcass, 20-day adult    21 ovary, virgin 4-day female    50 ovary, mated 4-day female    47 testis, mated 4-day male    51 accessory gland, mated 4-day male    54 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    18 central nervous system, pupae P8    11 head, virgin 1-day female    13 head, virgin 4-day female    14 head, virgin 20-day female    22 head, mated 1-day female    10 head, mated 4-day female    16 head, mated 20-day female    17 head, mated 1-day male    9 head, mated 4-day male    17 head, mated 20-day male    20 salivary gland, larvae L3 wandering    12 salivary gland, white prepupae    27 digestive system, larvae L3 wandering    27 digestive system, 1-day adult    27 digestive system, 4-day adult    22 digestive system, 20-day adult    21 fat body, larvae L3 wandering    15 fat body, white prepupae    12 fat body, pupae P8    27 carcass, larvae L3 wandering    23 carcass, 1-day adult    15 carcass, 4-day adult    24 carcass, 20-day adult    21 ovary, virgin 4-day female    50 ovary, mated 4-day female    47 testis, mated 4-day male    51 accessory gland, mated 4-day male    54 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 06-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    48 embryo 02-04hr    13 embryo 04-06hr    33 embryo 06-08hr    55 embryo 08-10hr    53 embryo 10-12hr    66 embryo 12-14hr    37 embryo 14-16hr    32 embryo 16-18hr    28 embryo 18-20hr    29 embryo 20-22hr    23 embryo 22-24hr    20 larva L1    27 larva L2    37 larva L3 12hr old    34 larva L3 puffstage 1-2    28 larva L3 puffstage 3-6    28 larva L3 puffstage 7-9    25 white prepupae new    23 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    17 pupae 3d postWPP    14 pupae 4d postWPP    13 adult male 01day    22 adult male 05day    27 adult male 30day    23 adult female 01day    28 adult female 05day    41 adult female 30day    47 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (48) embryo 02-04hr    13 embryo 04-06hr  (33) embryo 06-08hr  (55) embryo 08-10hr  (53) embryo 10-12hr  (66) embryo 12-14hr  (37) embryo 14-16hr  (32) embryo 16-18hr  (28) embryo 18-20hr  (29) embryo 20-22hr    23 embryo 22-24hr    20 larva L1  (27) larva L2  (37) larva L3 12hr old  (34) larva L3 puffstage 1-2  (28) larva L3 puffstage 3-6  (28) larva L3 puffstage 7-9    25 white prepupae new    23 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    17 pupae 3d postWPP    14 pupae 4d postWPP    13 adult male 01day    22 adult male 05day  (27) adult male 30day    23 adult female 01day  (28) adult female 05day  (41) adult female 30day  (47) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    48 embryo 02-04hr    13 embryo 04-06hr    33 embryo 06-08hr    55 embryo 08-10hr    53 embryo 10-12hr    66 embryo 12-14hr    37 embryo 14-16hr    32 embryo 16-18hr    28 embryo 18-20hr    29 embryo 20-22hr    23 embryo 22-24hr    20 larva L1    27 larva L2    37 larva L3 12hr old    34 larva L3 puffstage 1-2    28 larva L3 puffstage 3-6    28 larva L3 puffstage 7-9    25 white prepupae new    23 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    17 pupae 3d postWPP    14 pupae 4d postWPP    13 adult male 01day    22 adult male 05day    27 adult male 30day    23 adult female 01day    28 adult female 05day    41 adult female 30day    47 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    48 embryo 02-04hr    13 embryo 04-06hr    33 embryo 06-08hr    55 embryo 08-10hr    53 embryo 10-12hr    66 embryo 12-14hr    37 embryo 14-16hr    32 embryo 16-18hr    28 embryo 18-20hr    29 embryo 20-22hr    23 embryo 22-24hr    20 larva L1    27 larva L2    37 larva L3 12hr old    34 larva L3 puffstage 1-2    28 larva L3 puffstage 3-6    28 larva L3 puffstage 7-9    25 white prepupae new    23 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    17 pupae 3d postWPP    14 pupae 4d postWPP    13 adult male 01day    22 adult male 05day    27 adult male 30day    23 adult female 01day    28 adult female 05day    41 adult female 30day    47 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    48 embryo 02-04hr    13 embryo 04-06hr    33 embryo 06-08hr    55 embryo 08-10hr    53 embryo 10-12hr    66 embryo 12-14hr    37 embryo 14-16hr    32 embryo 16-18hr    28 embryo 18-20hr    29 embryo 20-22hr    23 embryo 22-24hr    20 larva L1    27 larva L2    37 larva L3 12hr old    34 larva L3 puffstage 1-2    28 larva L3 puffstage 3-6    28 larva L3 puffstage 7-9    25 white prepupae new    23 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    17 pupae 3d postWPP    14 pupae 4d postWPP    13 adult male 01day    22 adult male 05day    27 adult male 30day    23 adult female 01day    28 adult female 05day    41 adult female 30day    47 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (48) embryo 02-04hr    13 embryo 04-06hr  (33) embryo 06-08hr  (55) embryo 08-10hr  (53) embryo 10-12hr  (66) embryo 12-14hr  (37) embryo 14-16hr  32 embryo 16-18hr  28 embryo 18-20hr  29 embryo 20-22hr    23 embryo 22-24hr    20 larva L1  27 larva L2  (37) larva L3 12hr old  (34) larva L3 puffstage 1-2  28 larva L3 puffstage 3-6  28 larva L3 puffstage 7-9    25 white prepupae new    23 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    17 pupae 3d postWPP    14 pupae 4d postWPP    13 adult male 01day    22 adult male 05day  27 adult male 30day    23 adult female 01day  28 adult female 05day  (41) adult female 30day  (47) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    48 embryo 02-04hr    13 embryo 04-06hr    33 embryo 06-08hr    55 embryo 08-10hr    53 embryo 10-12hr    66 embryo 12-14hr    37 embryo 14-16hr    32 embryo 16-18hr    28 embryo 18-20hr    29 embryo 20-22hr    23 embryo 22-24hr    20 larva L1    27 larva L2    37 larva L3 12hr old    34 larva L3 puffstage 1-2    28 larva L3 puffstage 3-6    28 larva L3 puffstage 7-9    25 white prepupae new    23 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    17 pupae 3d postWPP    14 pupae 4d postWPP    13 adult male 01day    22 adult male 05day    27 adult male 30day    23 adult female 01day    28 adult female 05day    41 adult female 30day    47 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    48 embryo 02-04hr    13 embryo 04-06hr    33 embryo 06-08hr    55 embryo 08-10hr    53 embryo 10-12hr    66 embryo 12-14hr    37 embryo 14-16hr    32 embryo 16-18hr    28 embryo 18-20hr    29 embryo 20-22hr    23 embryo 22-24hr    20 larva L1    27 larva L2    37 larva L3 12hr old    34 larva L3 puffstage 1-2    28 larva L3 puffstage 3-6    28 larva L3 puffstage 7-9    25 white prepupae new    23 white prepupae 12hr    17 white prepupae 24hr    20 pupae 2d postWPP    17 pupae 3d postWPP    14 pupae 4d postWPP    13 adult male 01day    22 adult male 05day    27 adult male 30day    23 adult female 01day    28 adult female 05day    41 adult female 30day    47 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    101 Schneider line 2 Sg4    118 embryonic 1182-4H    66 embryonic GM2    96 embryonic Kc167    72 embryonic S1    58 embryonic S3    52 leg disc CME L1    139 wing disc CME-W2    77 wing disc ML-DmD8    24 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    82 wing disc ML-DmD21    72 wing disc ML-DmD32    63 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    29 mixed discs ML-DmD4-c1    47 CNS ML-DmBG1-c1    80 CNS ML-DmBG2-c2    74 tumorous blood cells mbn2    19 ovary fGS/OSS    37 ovary OSC    47 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (101) Schneider line 2 Sg4  (118) embryonic 1182-4H  (66) embryonic GM2  (96) embryonic Kc167  (72) embryonic S1  (58) embryonic S3  (52) leg disc CME L1  (139) wing disc CME-W2  (77) wing disc ML-DmD8    24 wing disc ML-DmD9    24 wing disc ML-DmD16-c3  (82) wing disc ML-DmD21  (72) wing disc ML-DmD32  (63) haltere disc ML-DmD17-c3  (29) eye-antennal disc ML-DmD11  (54) antennal disc ML-DmD20-c5  (29) mixed discs ML-DmD4-c1  (47) CNS ML-DmBG1-c1  (80) CNS ML-DmBG2-c2  (74) tumorous blood cells mbn2    19 ovary fGS/OSS  (37) ovary OSC  (47) ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  101 Schneider line 2 Sg4  (118) embryonic 1182-4H    66 embryonic GM2    96 embryonic Kc167    72 embryonic S1    58 embryonic S3    52 leg disc CME L1  (139) wing disc CME-W2    77 wing disc ML-DmD8    24 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    82 wing disc ML-DmD21    72 wing disc ML-DmD32    63 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    29 mixed discs ML-DmD4-c1    47 CNS ML-DmBG1-c1    80 CNS ML-DmBG2-c2    74 tumorous blood cells mbn2    19 ovary fGS/OSS    37 ovary OSC    47 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    101 Schneider line 2 Sg4    118 embryonic 1182-4H    66 embryonic GM2    96 embryonic Kc167    72 embryonic S1    58 embryonic S3    52 leg disc CME L1    139 wing disc CME-W2    77 wing disc ML-DmD8    24 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    82 wing disc ML-DmD21    72 wing disc ML-DmD32    63 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    29 mixed discs ML-DmD4-c1    47 CNS ML-DmBG1-c1    80 CNS ML-DmBG2-c2    74 tumorous blood cells mbn2    19 ovary fGS/OSS    37 ovary OSC    47 ovary OSS    15 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    101 Schneider line 2 Sg4    118 embryonic 1182-4H    66 embryonic GM2    96 embryonic Kc167    72 embryonic S1    58 embryonic S3    52 leg disc CME L1    139 wing disc CME-W2    77 wing disc ML-DmD8    24 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    82 wing disc ML-DmD21    72 wing disc ML-DmD32    63 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    29 mixed discs ML-DmD4-c1    47 CNS ML-DmBG1-c1    80 CNS ML-DmBG2-c2    74 tumorous blood cells mbn2    19 ovary fGS/OSS    37 ovary OSC    47 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (101) Schneider line 2 Sg4  (118) embryonic 1182-4H  (66) embryonic GM2  (96) embryonic Kc167  (72) embryonic S1  (58) embryonic S3  (52) leg disc CME L1  (139) wing disc CME-W2  (77) wing disc ML-DmD8    24 wing disc ML-DmD9    24 wing disc ML-DmD16-c3  (82) wing disc ML-DmD21  (72) wing disc ML-DmD32  (63) haltere disc ML-DmD17-c3  29 eye-antennal disc ML-DmD11  (54) antennal disc ML-DmD20-c5  29 mixed discs ML-DmD4-c1  (47) CNS ML-DmBG1-c1  (80) CNS ML-DmBG2-c2  (74) tumorous blood cells mbn2    19 ovary fGS/OSS  (37) ovary OSC  (47) ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  101 Schneider line 2 Sg4  118 embryonic 1182-4H    66 embryonic GM2    96 embryonic Kc167    72 embryonic S1    58 embryonic S3    52 leg disc CME L1  139 wing disc CME-W2    77 wing disc ML-DmD8    24 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    82 wing disc ML-DmD21    72 wing disc ML-DmD32    63 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    29 mixed discs ML-DmD4-c1    47 CNS ML-DmBG1-c1    80 CNS ML-DmBG2-c2    74 tumorous blood cells mbn2    19 ovary fGS/OSS    37 ovary OSC    47 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    101 Schneider line 2 Sg4    118 embryonic 1182-4H    66 embryonic GM2    96 embryonic Kc167    72 embryonic S1    58 embryonic S3    52 leg disc CME L1    139 wing disc CME-W2    77 wing disc ML-DmD8    24 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    82 wing disc ML-DmD21    72 wing disc ML-DmD32    63 haltere disc ML-DmD17-c3    29 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    29 mixed discs ML-DmD4-c1    47 CNS ML-DmBG1-c1    80 CNS ML-DmBG2-c2    74 tumorous blood cells mbn2    19 ovary fGS/OSS    37 ovary OSC    47 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    11 heat shock, 4-day adult    26 Cadmium 50 mM 6 hrs, larvae L3    36 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    28 Cadmium 100 mM 48 hrs, 4-day adult    32 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    33 Ethanol 5% 3 hrs, larvae L3    29 Ethanol 10% 3 hrs, larvae L3    25 Caffeine 1.5 mg/ml 4 hrs, larvae L3    30 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    15 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    31 Rotenone 2 μg 12 hrs, larvae L3    26 Rotenone 8 μg 12 hrs, larvae L3    29 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    11 heat shock, 4-day adult  26 Cadmium 50 mM 6 hrs, larvae L3  (36) Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult  (28) Cadmium 100 mM 48 hrs, 4-day adult  (32) Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3  (33) Ethanol 5% 3 hrs, larvae L3  (29) Ethanol 10% 3 hrs, larvae L3    25 Caffeine 1.5 mg/ml 4 hrs, larvae L3  (30) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (37) Caffeine 25 mg/ml 48 hrs, 4-day adult    15 Paraquat 5 mM 48 hrs, 4-day adult  (32) Paraquat 10 mM 48 hrs, 4-day adult  (31) Rotenone 2 μg 12 hrs, larvae L3  26 Rotenone 8 μg 12 hrs, larvae L3  (29) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    11 heat shock, 4-day adult    26 Cadmium 50 mM 6 hrs, larvae L3    36 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    28 Cadmium 100 mM 48 hrs, 4-day adult    32 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    33 Ethanol 5% 3 hrs, larvae L3    29 Ethanol 10% 3 hrs, larvae L3    25 Caffeine 1.5 mg/ml 4 hrs, larvae L3    30 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    15 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    31 Rotenone 2 μg 12 hrs, larvae L3    26 Rotenone 8 μg 12 hrs, larvae L3    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    11 heat shock, 4-day adult    26 Cadmium 50 mM 6 hrs, larvae L3    36 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    28 Cadmium 100 mM 48 hrs, 4-day adult    32 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    33 Ethanol 5% 3 hrs, larvae L3    29 Ethanol 10% 3 hrs, larvae L3    25 Caffeine 1.5 mg/ml 4 hrs, larvae L3    30 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    15 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    31 Rotenone 2 μg 12 hrs, larvae L3    26 Rotenone 8 μg 12 hrs, larvae L3    29 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    11 heat shock, 4-day adult    26 Cadmium 50 mM 6 hrs, larvae L3    36 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    28 Cadmium 100 mM 48 hrs, 4-day adult    32 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    33 Ethanol 5% 3 hrs, larvae L3    29 Ethanol 10% 3 hrs, larvae L3    25 Caffeine 1.5 mg/ml 4 hrs, larvae L3    30 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    15 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    31 Rotenone 2 μg 12 hrs, larvae L3    26 Rotenone 8 μg 12 hrs, larvae L3    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    11 heat shock, 4-day adult  26 Cadmium 50 mM 6 hrs, larvae L3  (36) Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult  28 Cadmium 100 mM 48 hrs, 4-day adult  32 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3  (33) Ethanol 5% 3 hrs, larvae L3  29 Ethanol 10% 3 hrs, larvae L3    25 Caffeine 1.5 mg/ml 4 hrs, larvae L3  30 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (37) Caffeine 25 mg/ml 48 hrs, 4-day adult    15 Paraquat 5 mM 48 hrs, 4-day adult  32 Paraquat 10 mM 48 hrs, 4-day adult  31 Rotenone 2 μg 12 hrs, larvae L3  26 Rotenone 8 μg 12 hrs, larvae L3  29 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    11 heat shock, 4-day adult    26 Cadmium 50 mM 6 hrs, larvae L3    36 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    28 Cadmium 100 mM 48 hrs, 4-day adult    32 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    33 Ethanol 5% 3 hrs, larvae L3    29 Ethanol 10% 3 hrs, larvae L3    25 Caffeine 1.5 mg/ml 4 hrs, larvae L3    30 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    15 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    31 Rotenone 2 μg 12 hrs, larvae L3    26 Rotenone 8 μg 12 hrs, larvae L3    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    11 heat shock, 4-day adult    26 Cadmium 50 mM 6 hrs, larvae L3    36 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    28 Cadmium 100 mM 48 hrs, 4-day adult    32 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    33 Ethanol 5% 3 hrs, larvae L3    29 Ethanol 10% 3 hrs, larvae L3    25 Caffeine 1.5 mg/ml 4 hrs, larvae L3    30 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    15 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    31 Rotenone 2 μg 12 hrs, larvae L3    26 Rotenone 8 μg 12 hrs, larvae L3    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_03 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • GH07340 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030990 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7556-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG7556 Stages(s) 1-3 Stages(s) 9-10 Stages(s) 11-12
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG7556GD13191 Phenotype manifest in Allele
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of CG7556 Class Mutagen Stocks Known lesion CG7556d04700 P-element activity 1 -- CG7556EY04469 P-element activity 1 -- CG7556GG01549 0 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG7556 Class Mutagen Stocks Known lesion CG7556GD13191 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG7556HMS00515 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG7556KK101766 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG7556NIG.7556R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD13191} NA P{KK101766} NA P{NIG.7556R} NA P{TRiP.HMS00515} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}CG7556EY04469 NA P{Mae-UAS.6.11}CG7556GG01549 NA P{XP}CG7556d04700 NA
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
chromatin binding inferred from electronic annotation with InterPro:IPR001005 (FlyBase Curators et al., 2004-) DNA binding inferred from electronic annotation with InterPro:IPR001005, InterPro:IPR012287 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG7556 - CG9547 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7556 - scf anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG7556 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 59208 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0030990 DroID - A comprehensive database of gene and protein interactions. • FBgn0030990 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32902
Orthologs
OrthoDB Orthologs (40) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6C88C7 Dipteran inclusive ortholog search EOG6T4D3Z Insect inclusive ortholog search EOG63XT0K Arthropod inclusive ortholog search EOG62V6ZB Metazoa inclusive ortholog search EOG689HF4
Orthologs in Drosophila Species (EOG6C88C7)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG7556     Drosophila simulans   Dsim\GD15599 Y   Drosophila sechellia   Dsec\GM22763 Y   Drosophila erecta   Dere\GG18074 Y   Drosophila yakuba   Dyak\GE15471 Y   Drosophila ananassae   Dana\GF16003 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA20437 Y   Drosophila persimilis   Dper\GL13020 Y   Drosophila willistoni   Dwil\GK25169 Y   Drosophila virilis   Dvir\GJ19169 Y   Drosophila mojavensis   Dmoj\GI15454 Y   Drosophila grimshawi   Dgri\GH17711 Y
Orthologs in non-Drosophila Dipterans (EOG6T4D3Z)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL003791   Anopheles gambiae Malaria mosquito  Agam\AGAP000261   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ017724
Orthologs in non-Dipteran Insects (EOG63XT0K)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC552151   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG005095   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH13225   Atta cephalotes Leafcutter ant  Acep\ACEP26635   Camponotus floridanus Florida carpenter ant  Cflo\CFLO16068   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL16801   Linepithema humile Argentine ant  Lhum\LH15853   Pogonomyrmex barbatus Red harvester ant  Pbar\PB16058   Solenopsis invicta Red fire ant  Sinv\SINV22815   Acyrthosiphon pisum Pea aphid  Apim\ACYPI005335   Bombyx mori Silkmoth  Bmor\BGIBMGA006645   Pediculus humanus Human body louse  Phum\PHUM258010   Tribolium castaneum Red flour beetle  Tcas\TC030769
Orthologs in non-Insect Arthropods (EOG62V6ZB)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\LAR   Daphnia pulex Water flea  Dpux\JGI_V11_330200   Daphnia pulex Water flea  Dpux\JGI_V11_261672   Ixodes scapularis Deer tick  Isca\ISCW012013
Orthologs in non-Arthropod Metazoa (EOG689HF4)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\F54F2.9   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_001496gn   Danio rerio Zebrafish  Drer\CH211-279L9.4   Xenopus tropicalis Western clawed frog  Xtro\dnajc1   Gallus gallus Domestic chicken  Ggal\DNAJC1   Mus musculus House mouse  Mmus\Dnajc1   Rattus norvegicus Norway rat  Rnor\LOC100360412   Homo sapiens Human  Hsap\DNAJC1
Human Orthologs (1)
Gene OMIM HGNC Hsap\DNAJC1
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD15599 Drosophila sechellia Dsec\GM22763 Drosophila erecta Dere\GG18074 Drosophila yakuba Dyak\GE15471 Drosophila ananassae Dana\GF16003 Drosophila pseudoobscura pseudoobscura Dpse\GA20437 Drosophila persimilis Dper\GL13020 Drosophila willistoni Dwil\GK25169 Drosophila virilis Dvir\GJ19169 Drosophila mojavensis Dmoj\GI15454 Drosophila grimshawi Dgri\GH17711
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	15748 y1 w67c23 P{EPgy2}CG7556EY04469 32511 y1 sc* v1; P{TRiP.HMS00515}attP2
Harvard	- P{XP}CG7556d04700
VDRC	v107020 P{KK101766}VIE-260B v28621 w1118; P{GD13191}v28621 v28622 w1118; P{GD13191}v28622
Genomic Clones ( 1 )
	BACR49A05 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 48 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH07340
Other clones	DPiM_GH07340
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT03208 AT20573 GH11535 GH27712 LD31676 RE16363 RE21271 RE30119 RE30982 RE57464 RE58124 RE62433 RH10458 RH16218 RH23252 RH28856 RH34073 RH36143 RH52684 SD09868 SD12041 SD15176 SD15707 SD27672 UT01126
Other clones	30114 35358 122824 160098 166247 274898 CK01.120B.D6 CK01.169B.A2 Dmel_dig_010739_0615_0676 EK091847 EK138556 EK146046 EK150108 EK165607 EK200706 EK246041 EK262951 EK302516 FGM305D02 IP18532 RE04171
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0030990 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32902
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_133126 RefSeq (Proteins) • NP_573354 DDBJ / EMBL / GenBank • AAF48924 AAM50137 AI108494 AI402078 AY119483 CZ474078 Entrez Gene - A searchable database of RefSeq genes. • 32902 UniProtKB/TrEMBL • Q9VWL4
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • SANT/Myb domain (IPR001005) DnaJ domain (IPR001623) Homeodomain-like (IPR009057) DnaJ domain, conserved site (IPR018253) Myb-like domain (IPR017877) SANT domain (IPR017884) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GH07340
Linkouts
	BioGRID - A database of protein and genetic interactions • 59208 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0030990 DroID - A comprehensive database of gene and protein interactions. • FBgn0030990 DRSC - Results from RNAi screens. • FBgn0030990 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0030990 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7556-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0030990 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32902 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32902 modMine - Data generated by the modENCODE project. • FBgn0030990
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG7556 (Sathyanarayanan et al., 2008, Keleman et al., 2009.8.5, Ni et al., 2010.12.1, Yano et al., 2012, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
References ( 21 )
Generate a list of	All references relating to this gene ( 21 )
List References by type	Research paper  ( 3 ) Supplementary material  ( 4 ) Personal communication to FlyBase  ( 8 ) FlyBase analysis  ( 2 ) Stock list  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 2 )
	Yano et al., 2012, J. Neurogenet. 26(1): 53--63 Identification of proteasome components required for apical localization of chaoptin using functional genomics. [FBrf0217843] Baycin-Hizal et al., 2011, J. Proteome Res. 10(6): 2777--2784 GlycoFly: A Database of Drosophila N-linked Glycoproteins Identified Using SPEG-MS Techniques. [FBrf0213834] Show all research papers ...