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Gene Dmel\Nat1

General Information
Symbol	Dmel\Nat1	Species	D. melanogaster
Name	Nat1	Annotation symbol	CG12202
Feature type	protein_coding_gene	FlyBase ID	FBgn0031020
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	18C7-18C7	Sequence location	X:19,374,292..19,378,676 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Nat1 is referred to in FlyBase by the symbol Dmel\Nat1 (CG12202, FBgn0031020). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: peptide alpha-N-acetyltransferase activity. There is experimental evidence that it is involved in the biological process: neurogenesis. 9 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: N-terminal acetyltransferase A, auxiliary subunit; Tetratricopeptide TPR2; Tetratricopeptide repeat; Tetratricopeptide repeat-containing domain; Tetratricopeptide-like helical. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1637169_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Nat1. Gene sequence location is X:19374186..19378676.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 18C7-18C7   Limits computationally determined from genome sequence between P{EP}CG8051EP1550&P{EP}EP1300 and P{EP}EP1526&P{EP}PfrxEP1150
Experimentally Determined Cytological Location
Cytogenetic map Notes References 18C1-18C4   (determined by in situ hybridisation)   (Peter et al., 2002)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Nat1 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.51
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Nat1-RA FBtr0074711  NM_133156   3738   890
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Nat1-PA   FBpp0074480   103.1   890   7.29     NP_573384   AAF48957
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Tetratricopeptide TPR2 (IPR013105) Tetratricopeptide-like helical (IPR011990) Tetratricopeptide repeat-containing domain (IPR013026) Tetratricopeptide repeat (IPR019734) N-terminal acetyltransferase A, auxiliary subunit (IPR021183)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA263821   AA392307   AA440327   AA735890   AA950634   AE014298 AAF48957   AI110020   AI135172   AI512344   AI515224   AI515652   AI516145   AI530913   AI531082   AI531414   AI531660   AI532679   AI532902   AI533069   AI533175   AI533837   AI533839   AI541781   AI542249   AI542999   AI543189   AI543465   AI543509   AI543580   AI543612   AW944609   BF491729   BF491914   BF494786   BF501619   BG639700   BI166337   BI233243   BI233277   BI237022   BI238645   BI239522   BI353213   BI353639   BI354059   BI355382   BI355625   BI484682   BI580651   BI632539   BI632648   BI635593   BI640884   BI641769   BT014631   CK658627   CK661624   CL527970   CO178889   CO293159   CO296426   CO297074   CO298533   CO317023   CO333251   EC064403   EC201108   EC205372   EC226948   EC235680   EC240843   EC247629   EL879648   EL884054   GH739948   GH740306   GH741214   GH741310   GH741530   GH742659   GH743646   GH743943   GH744327   GH745453   GH746484   GH746815   GH764887   GH766887   GH767818   GO254375
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VWI2
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
mitotic spindle inferred from direct assay (Müller et al., 2010)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    527.625 Larval Midgut    227.9 Larval Hindgut    398.7 Larval Malpighian Tubules    158.8 Larval Fat Body    119.9 Larval Salivary Gland    498.7 Larval Trachea    460.05 Larval Carcass    400.225 Adult Head    172.2 Adult Eye    118.075 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    187.1 Adult Crop    262.6 Adult Midgut    222.9 Adult Hindgut    184.5 Adult Malpighian Tubules    247.5 Adult Fat Body    322.5 Adult Salivary Gland    142.3 Adult Heart    199.625 Adult VirginFemale Spermatheca    192.9 Adult InseminatedFemale Spermatheca    233.6 Adult Ovary    786.2 Adult Testis    158.3 Adult Male Accessory Gland    294.1 Adult Carcass    159.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  527.625 Larval Midgut    227.9 Larval Hindgut    398.7 Larval Malpighian Tubules    158.8 Larval Fat Body    119.9 Larval Salivary Gland    498.7 Larval Trachea    460.05 Larval Carcass    400.225 Adult Head    172.2 Adult Eye    118.075 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    187.1 Adult Crop    262.6 Adult Midgut    222.9 Adult Hindgut    184.5 Adult Malpighian Tubules    247.5 Adult Fat Body    322.5 Adult Salivary Gland    142.3 Adult Heart    199.625 Adult VirginFemale Spermatheca    192.9 Adult InseminatedFemale Spermatheca    233.6 Adult Ovary  (786.2) Adult Testis    158.3 Adult Male Accessory Gland    294.1 Adult Carcass    159.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    527.625 Larval Midgut    227.9 Larval Hindgut    398.7 Larval Malpighian Tubules    158.8 Larval Fat Body    119.9 Larval Salivary Gland    498.7 Larval Trachea    460.05 Larval Carcass    400.225 Adult Head    172.2 Adult Eye    118.075 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    187.1 Adult Crop    262.6 Adult Midgut    222.9 Adult Hindgut    184.5 Adult Malpighian Tubules    247.5 Adult Fat Body    322.5 Adult Salivary Gland    142.3 Adult Heart    199.625 Adult VirginFemale Spermatheca    192.9 Adult InseminatedFemale Spermatheca    233.6 Adult Ovary    786.2 Adult Testis    158.3 Adult Male Accessory Gland    294.1 Adult Carcass    159.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    527.625 Larval Midgut    227.9 Larval Hindgut    398.7 Larval Malpighian Tubules    158.8 Larval Fat Body    119.9 Larval Salivary Gland    498.7 Larval Trachea    460.05 Larval Carcass    400.225 Adult Head    172.2 Adult Eye    118.075 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    187.1 Adult Crop    262.6 Adult Midgut    222.9 Adult Hindgut    184.5 Adult Malpighian Tubules    247.5 Adult Fat Body    322.5 Adult Salivary Gland    142.3 Adult Heart    199.625 Adult VirginFemale Spermatheca    192.9 Adult InseminatedFemale Spermatheca    233.6 Adult Ovary    786.2 Adult Testis    158.3 Adult Male Accessory Gland    294.1 Adult Carcass    159.9 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    527.625 Larval Midgut    227.9 Larval Hindgut    398.7 Larval Malpighian Tubules    158.8 Larval Fat Body    119.9 Larval Salivary Gland    498.7 Larval Trachea    460.05 Larval Carcass    400.225 Adult Head    172.2 Adult Eye    118.075 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    187.1 Adult Crop    262.6 Adult Midgut    222.9 Adult Hindgut    184.5 Adult Malpighian Tubules    247.5 Adult Fat Body    322.5 Adult Salivary Gland    142.3 Adult Heart    199.625 Adult VirginFemale Spermatheca    192.9 Adult InseminatedFemale Spermatheca    233.6 Adult Ovary    786.2 Adult Testis    158.3 Adult Male Accessory Gland    294.1 Adult Carcass    159.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  527.625 Larval Midgut    227.9 Larval Hindgut    398.7 Larval Malpighian Tubules    158.8 Larval Fat Body    119.9 Larval Salivary Gland    498.7 Larval Trachea    460.05 Larval Carcass    400.225 Adult Head    172.2 Adult Eye    118.075 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    187.1 Adult Crop    262.6 Adult Midgut    222.9 Adult Hindgut    184.5 Adult Malpighian Tubules    247.5 Adult Fat Body    322.5 Adult Salivary Gland    142.3 Adult Heart    199.625 Adult VirginFemale Spermatheca    192.9 Adult InseminatedFemale Spermatheca    233.6 Adult Ovary  786.2 Adult Testis    158.3 Adult Male Accessory Gland    294.1 Adult Carcass    159.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    527.625 Larval Midgut    227.9 Larval Hindgut    398.7 Larval Malpighian Tubules    158.8 Larval Fat Body    119.9 Larval Salivary Gland    498.7 Larval Trachea    460.05 Larval Carcass    400.225 Adult Head    172.2 Adult Eye    118.075 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    187.1 Adult Crop    262.6 Adult Midgut    222.9 Adult Hindgut    184.5 Adult Malpighian Tubules    247.5 Adult Fat Body    322.5 Adult Salivary Gland    142.3 Adult Heart    199.625 Adult VirginFemale Spermatheca    192.9 Adult InseminatedFemale Spermatheca    233.6 Adult Ovary    786.2 Adult Testis    158.3 Adult Male Accessory Gland    294.1 Adult Carcass    159.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    527.625 Larval Midgut    227.9 Larval Hindgut    398.7 Larval Malpighian Tubules    158.8 Larval Fat Body    119.9 Larval Salivary Gland    498.7 Larval Trachea    460.05 Larval Carcass    400.225 Adult Head    172.2 Adult Eye    118.075 Adult Brain    164.6 Adult Thoracic-Abdominal Ganglion    187.1 Adult Crop    262.6 Adult Midgut    222.9 Adult Hindgut    184.5 Adult Malpighian Tubules    247.5 Adult Fat Body    322.5 Adult Salivary Gland    142.3 Adult Heart    199.625 Adult VirginFemale Spermatheca    192.9 Adult InseminatedFemale Spermatheca    233.6 Adult Ovary    786.2 Adult Testis    158.3 Adult Male Accessory Gland    294.1 Adult Carcass    159.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    172.2   NA  Eye    118.075   NA  Brain    164.6   527.625  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    187.1   NA  Crop    262.6   227.9  Midgut    222.9   398.7  Hindgut    184.5   158.8  Malpighian Tubules    247.5   119.9  Fat Body    322.5   498.7  Salivary Gland    142.3   NA  Heart    199.625   460.05  Trachea    NA   NA  VirginFemale Spermatheca    192.9   NA  InseminatedFemale Spermatheca    233.6   NA  Ovary    786.2   NA  Testis    158.3   NA  Male Accessory Gland    294.1   400.225  Carcass    159.9 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    63 central nervous system, larvae L3    65 central nervous system, pupae P8    27 head, virgin 1-day female    20 head, virgin 4-day female    20 head, virgin 20-day female    16 head, mated 1-day female    22 head, mated 4-day female    20 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    19 head, mated 20-day male    21 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    20 digestive system, 4-day adult    32 digestive system, 20-day adult    25 fat body, larvae L3 wandering    11 fat body, white prepupae    18 fat body, pupae P8    26 carcass, larvae L3 wandering    38 carcass, 1-day adult    19 carcass, 4-day adult    35 carcass, 20-day adult    23 ovary, virgin 4-day female    167 ovary, mated 4-day female    191 testis, mated 4-day male    93 accessory gland, mated 4-day male    21 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (63) central nervous system, larvae L3  (65) central nervous system, pupae P8  (27) head, virgin 1-day female    20 head, virgin 4-day female    20 head, virgin 20-day female    16 head, mated 1-day female    22 head, mated 4-day female    20 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    19 head, mated 20-day male    21 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    20 digestive system, 4-day adult  (32) digestive system, 20-day adult    25 fat body, larvae L3 wandering    11 fat body, white prepupae    18 fat body, pupae P8  26 carcass, larvae L3 wandering  (38) carcass, 1-day adult    19 carcass, 4-day adult  (35) carcass, 20-day adult    23 ovary, virgin 4-day female  (167) ovary, mated 4-day female  (191) testis, mated 4-day male  (93) accessory gland, mated 4-day male    21 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    63 central nervous system, larvae L3    65 central nervous system, pupae P8    27 head, virgin 1-day female    20 head, virgin 4-day female    20 head, virgin 20-day female    16 head, mated 1-day female    22 head, mated 4-day female    20 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    19 head, mated 20-day male    21 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    20 digestive system, 4-day adult    32 digestive system, 20-day adult    25 fat body, larvae L3 wandering    11 fat body, white prepupae    18 fat body, pupae P8    26 carcass, larvae L3 wandering    38 carcass, 1-day adult    19 carcass, 4-day adult    35 carcass, 20-day adult    23 ovary, virgin 4-day female  (167) ovary, mated 4-day female  (191) testis, mated 4-day male    93 accessory gland, mated 4-day male    21 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    63 central nervous system, larvae L3    65 central nervous system, pupae P8    27 head, virgin 1-day female    20 head, virgin 4-day female    20 head, virgin 20-day female    16 head, mated 1-day female    22 head, mated 4-day female    20 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    19 head, mated 20-day male    21 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    20 digestive system, 4-day adult    32 digestive system, 20-day adult    25 fat body, larvae L3 wandering    11 fat body, white prepupae    18 fat body, pupae P8    26 carcass, larvae L3 wandering    38 carcass, 1-day adult    19 carcass, 4-day adult    35 carcass, 20-day adult    23 ovary, virgin 4-day female    167 ovary, mated 4-day female    191 testis, mated 4-day male    93 accessory gland, mated 4-day male    21 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    63 central nervous system, larvae L3    65 central nervous system, pupae P8    27 head, virgin 1-day female    20 head, virgin 4-day female    20 head, virgin 20-day female    16 head, mated 1-day female    22 head, mated 4-day female    20 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    19 head, mated 20-day male    21 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    20 digestive system, 4-day adult    32 digestive system, 20-day adult    25 fat body, larvae L3 wandering    11 fat body, white prepupae    18 fat body, pupae P8    26 carcass, larvae L3 wandering    38 carcass, 1-day adult    19 carcass, 4-day adult    35 carcass, 20-day adult    23 ovary, virgin 4-day female    167 ovary, mated 4-day female    191 testis, mated 4-day male    93 accessory gland, mated 4-day male    21 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (63) central nervous system, larvae L3  (65) central nervous system, pupae P8  27 head, virgin 1-day female    20 head, virgin 4-day female    20 head, virgin 20-day female    16 head, mated 1-day female    22 head, mated 4-day female    20 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    19 head, mated 20-day male    21 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    20 digestive system, 4-day adult  32 digestive system, 20-day adult    25 fat body, larvae L3 wandering    11 fat body, white prepupae    18 fat body, pupae P8  26 carcass, larvae L3 wandering  (38) carcass, 1-day adult    19 carcass, 4-day adult  (35) carcass, 20-day adult    23 ovary, virgin 4-day female  (167) ovary, mated 4-day female  (191) testis, mated 4-day male  (93) accessory gland, mated 4-day male    21 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    63 central nervous system, larvae L3    65 central nervous system, pupae P8    27 head, virgin 1-day female    20 head, virgin 4-day female    20 head, virgin 20-day female    16 head, mated 1-day female    22 head, mated 4-day female    20 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    19 head, mated 20-day male    21 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    20 digestive system, 4-day adult    32 digestive system, 20-day adult    25 fat body, larvae L3 wandering    11 fat body, white prepupae    18 fat body, pupae P8    26 carcass, larvae L3 wandering    38 carcass, 1-day adult    19 carcass, 4-day adult    35 carcass, 20-day adult    23 ovary, virgin 4-day female  (167) ovary, mated 4-day female  (191) testis, mated 4-day male    93 accessory gland, mated 4-day male    21 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    63 central nervous system, larvae L3    65 central nervous system, pupae P8    27 head, virgin 1-day female    20 head, virgin 4-day female    20 head, virgin 20-day female    16 head, mated 1-day female    22 head, mated 4-day female    20 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    19 head, mated 20-day male    21 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    20 digestive system, 4-day adult    32 digestive system, 20-day adult    25 fat body, larvae L3 wandering    11 fat body, white prepupae    18 fat body, pupae P8    26 carcass, larvae L3 wandering    38 carcass, 1-day adult    19 carcass, 4-day adult    35 carcass, 20-day adult    23 ovary, virgin 4-day female    167 ovary, mated 4-day female    191 testis, mated 4-day male    93 accessory gland, mated 4-day male    21 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    143 embryo 02-04hr    29 embryo 04-06hr    68 embryo 06-08hr    70 embryo 08-10hr    67 embryo 10-12hr    87 embryo 12-14hr    48 embryo 14-16hr    55 embryo 16-18hr    36 embryo 18-20hr    29 embryo 20-22hr    34 embryo 22-24hr    26 larva L1    111 larva L2    82 larva L3 12hr old    64 larva L3 puffstage 1-2    24 larva L3 puffstage 3-6    31 larva L3 puffstage 7-9    29 white prepupae new    28 white prepupae 12hr    36 white prepupae 24hr    43 pupae 2d postWPP    33 pupae 3d postWPP    24 pupae 4d postWPP    30 adult male 01day    28 adult male 05day    36 adult male 30day    38 adult female 01day    103 adult female 05day    113 adult female 30day    120 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (143) embryo 02-04hr  (29) embryo 04-06hr  (68) embryo 06-08hr  (70) embryo 08-10hr  (67) embryo 10-12hr  (87) embryo 12-14hr  (48) embryo 14-16hr  (55) embryo 16-18hr  (36) embryo 18-20hr  (29) embryo 20-22hr  (34) embryo 22-24hr  26 larva L1  (111) larva L2  (82) larva L3 12hr old  (64) larva L3 puffstage 1-2    24 larva L3 puffstage 3-6  (31) larva L3 puffstage 7-9  (29) white prepupae new  (28) white prepupae 12hr  (36) white prepupae 24hr  (43) pupae 2d postWPP  (33) pupae 3d postWPP    24 pupae 4d postWPP  (30) adult male 01day  (28) adult male 05day  (36) adult male 30day  (38) adult female 01day  (103) adult female 05day  (113) adult female 30day  (120) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (143) embryo 02-04hr    29 embryo 04-06hr    68 embryo 06-08hr    70 embryo 08-10hr    67 embryo 10-12hr    87 embryo 12-14hr    48 embryo 14-16hr    55 embryo 16-18hr    36 embryo 18-20hr    29 embryo 20-22hr    34 embryo 22-24hr    26 larva L1  (111) larva L2    82 larva L3 12hr old    64 larva L3 puffstage 1-2    24 larva L3 puffstage 3-6    31 larva L3 puffstage 7-9    29 white prepupae new    28 white prepupae 12hr    36 white prepupae 24hr    43 pupae 2d postWPP    33 pupae 3d postWPP    24 pupae 4d postWPP    30 adult male 01day    28 adult male 05day    36 adult male 30day    38 adult female 01day  103 adult female 05day  (113) adult female 30day  (120) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    143 embryo 02-04hr    29 embryo 04-06hr    68 embryo 06-08hr    70 embryo 08-10hr    67 embryo 10-12hr    87 embryo 12-14hr    48 embryo 14-16hr    55 embryo 16-18hr    36 embryo 18-20hr    29 embryo 20-22hr    34 embryo 22-24hr    26 larva L1    111 larva L2    82 larva L3 12hr old    64 larva L3 puffstage 1-2    24 larva L3 puffstage 3-6    31 larva L3 puffstage 7-9    29 white prepupae new    28 white prepupae 12hr    36 white prepupae 24hr    43 pupae 2d postWPP    33 pupae 3d postWPP    24 pupae 4d postWPP    30 adult male 01day    28 adult male 05day    36 adult male 30day    38 adult female 01day    103 adult female 05day    113 adult female 30day    120 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    143 embryo 02-04hr    29 embryo 04-06hr    68 embryo 06-08hr    70 embryo 08-10hr    67 embryo 10-12hr    87 embryo 12-14hr    48 embryo 14-16hr    55 embryo 16-18hr    36 embryo 18-20hr    29 embryo 20-22hr    34 embryo 22-24hr    26 larva L1    111 larva L2    82 larva L3 12hr old    64 larva L3 puffstage 1-2    24 larva L3 puffstage 3-6    31 larva L3 puffstage 7-9    29 white prepupae new    28 white prepupae 12hr    36 white prepupae 24hr    43 pupae 2d postWPP    33 pupae 3d postWPP    24 pupae 4d postWPP    30 adult male 01day    28 adult male 05day    36 adult male 30day    38 adult female 01day    103 adult female 05day    113 adult female 30day    120 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (143) embryo 02-04hr  29 embryo 04-06hr  (68) embryo 06-08hr  (70) embryo 08-10hr  (67) embryo 10-12hr  (87) embryo 12-14hr  (48) embryo 14-16hr  (55) embryo 16-18hr  (36) embryo 18-20hr  29 embryo 20-22hr  (34) embryo 22-24hr  26 larva L1  (111) larva L2  (82) larva L3 12hr old  (64) larva L3 puffstage 1-2    24 larva L3 puffstage 3-6  31 larva L3 puffstage 7-9  29 white prepupae new  28 white prepupae 12hr  (36) white prepupae 24hr  (43) pupae 2d postWPP  (33) pupae 3d postWPP    24 pupae 4d postWPP  30 adult male 01day  28 adult male 05day  (36) adult male 30day  (38) adult female 01day  (103) adult female 05day  (113) adult female 30day  (120) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  143 embryo 02-04hr    29 embryo 04-06hr    68 embryo 06-08hr    70 embryo 08-10hr    67 embryo 10-12hr    87 embryo 12-14hr    48 embryo 14-16hr    55 embryo 16-18hr    36 embryo 18-20hr    29 embryo 20-22hr    34 embryo 22-24hr    26 larva L1  111 larva L2    82 larva L3 12hr old    64 larva L3 puffstage 1-2    24 larva L3 puffstage 3-6    31 larva L3 puffstage 7-9    29 white prepupae new    28 white prepupae 12hr    36 white prepupae 24hr    43 pupae 2d postWPP    33 pupae 3d postWPP    24 pupae 4d postWPP    30 adult male 01day    28 adult male 05day    36 adult male 30day    38 adult female 01day  103 adult female 05day  113 adult female 30day  120 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    143 embryo 02-04hr    29 embryo 04-06hr    68 embryo 06-08hr    70 embryo 08-10hr    67 embryo 10-12hr    87 embryo 12-14hr    48 embryo 14-16hr    55 embryo 16-18hr    36 embryo 18-20hr    29 embryo 20-22hr    34 embryo 22-24hr    26 larva L1    111 larva L2    82 larva L3 12hr old    64 larva L3 puffstage 1-2    24 larva L3 puffstage 3-6    31 larva L3 puffstage 7-9    29 white prepupae new    28 white prepupae 12hr    36 white prepupae 24hr    43 pupae 2d postWPP    33 pupae 3d postWPP    24 pupae 4d postWPP    30 adult male 01day    28 adult male 05day    36 adult male 30day    38 adult female 01day    103 adult female 05day    113 adult female 30day    120 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    119 Schneider line 2 Sg4    113 embryonic 1182-4H    100 embryonic GM2    110 embryonic Kc167    99 embryonic S1    86 embryonic S3    78 leg disc CME L1    105 wing disc CME-W2    59 wing disc ML-DmD8    71 wing disc ML-DmD9    47 wing disc ML-DmD16-c3    48 wing disc ML-DmD21    156 wing disc ML-DmD32    83 haltere disc ML-DmD17-c3    92 eye-antennal disc ML-DmD11    101 antennal disc ML-DmD20-c5    80 mixed discs ML-DmD4-c1    88 CNS ML-DmBG1-c1    86 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    42 ovary fGS/OSS    72 ovary OSC    103 ovary OSS    55 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (119) Schneider line 2 Sg4  (113) embryonic 1182-4H  (100) embryonic GM2  (110) embryonic Kc167  (99) embryonic S1  (86) embryonic S3  (78) leg disc CME L1  (105) wing disc CME-W2  (59) wing disc ML-DmD8  (71) wing disc ML-DmD9  (47) wing disc ML-DmD16-c3  (48) wing disc ML-DmD21  (156) wing disc ML-DmD32  (83) haltere disc ML-DmD17-c3  (92) eye-antennal disc ML-DmD11  (101) antennal disc ML-DmD20-c5  (80) mixed discs ML-DmD4-c1  (88) CNS ML-DmBG1-c1  (86) CNS ML-DmBG2-c2  (68) tumorous blood cells mbn2  (42) ovary fGS/OSS  (72) ovary OSC  (103) ovary OSS  (55) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (119) Schneider line 2 Sg4  (113) embryonic 1182-4H    100 embryonic GM2  (110) embryonic Kc167    99 embryonic S1    86 embryonic S3    78 leg disc CME L1  105 wing disc CME-W2    59 wing disc ML-DmD8    71 wing disc ML-DmD9    47 wing disc ML-DmD16-c3    48 wing disc ML-DmD21  (156) wing disc ML-DmD32    83 haltere disc ML-DmD17-c3    92 eye-antennal disc ML-DmD11  101 antennal disc ML-DmD20-c5    80 mixed discs ML-DmD4-c1    88 CNS ML-DmBG1-c1    86 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    42 ovary fGS/OSS    72 ovary OSC  103 ovary OSS    55 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    119 Schneider line 2 Sg4    113 embryonic 1182-4H    100 embryonic GM2    110 embryonic Kc167    99 embryonic S1    86 embryonic S3    78 leg disc CME L1    105 wing disc CME-W2    59 wing disc ML-DmD8    71 wing disc ML-DmD9    47 wing disc ML-DmD16-c3    48 wing disc ML-DmD21    156 wing disc ML-DmD32    83 haltere disc ML-DmD17-c3    92 eye-antennal disc ML-DmD11    101 antennal disc ML-DmD20-c5    80 mixed discs ML-DmD4-c1    88 CNS ML-DmBG1-c1    86 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    42 ovary fGS/OSS    72 ovary OSC    103 ovary OSS    55 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    119 Schneider line 2 Sg4    113 embryonic 1182-4H    100 embryonic GM2    110 embryonic Kc167    99 embryonic S1    86 embryonic S3    78 leg disc CME L1    105 wing disc CME-W2    59 wing disc ML-DmD8    71 wing disc ML-DmD9    47 wing disc ML-DmD16-c3    48 wing disc ML-DmD21    156 wing disc ML-DmD32    83 haltere disc ML-DmD17-c3    92 eye-antennal disc ML-DmD11    101 antennal disc ML-DmD20-c5    80 mixed discs ML-DmD4-c1    88 CNS ML-DmBG1-c1    86 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    42 ovary fGS/OSS    72 ovary OSC    103 ovary OSS    55 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (119) Schneider line 2 Sg4  (113) embryonic 1182-4H  (100) embryonic GM2  (110) embryonic Kc167  (99) embryonic S1  (86) embryonic S3  (78) leg disc CME L1  (105) wing disc CME-W2  (59) wing disc ML-DmD8  (71) wing disc ML-DmD9  (47) wing disc ML-DmD16-c3  (48) wing disc ML-DmD21  (156) wing disc ML-DmD32  (83) haltere disc ML-DmD17-c3  (92) eye-antennal disc ML-DmD11  (101) antennal disc ML-DmD20-c5  (80) mixed discs ML-DmD4-c1  (88) CNS ML-DmBG1-c1  (86) CNS ML-DmBG2-c2  (68) tumorous blood cells mbn2  (42) ovary fGS/OSS  (72) ovary OSC  (103) ovary OSS  (55) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  119 Schneider line 2 Sg4  113 embryonic 1182-4H    100 embryonic GM2  110 embryonic Kc167    99 embryonic S1    86 embryonic S3    78 leg disc CME L1  105 wing disc CME-W2    59 wing disc ML-DmD8    71 wing disc ML-DmD9    47 wing disc ML-DmD16-c3    48 wing disc ML-DmD21  (156) wing disc ML-DmD32    83 haltere disc ML-DmD17-c3    92 eye-antennal disc ML-DmD11  101 antennal disc ML-DmD20-c5    80 mixed discs ML-DmD4-c1    88 CNS ML-DmBG1-c1    86 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    42 ovary fGS/OSS    72 ovary OSC  103 ovary OSS    55 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    119 Schneider line 2 Sg4    113 embryonic 1182-4H    100 embryonic GM2    110 embryonic Kc167    99 embryonic S1    86 embryonic S3    78 leg disc CME L1    105 wing disc CME-W2    59 wing disc ML-DmD8    71 wing disc ML-DmD9    47 wing disc ML-DmD16-c3    48 wing disc ML-DmD21    156 wing disc ML-DmD32    83 haltere disc ML-DmD17-c3    92 eye-antennal disc ML-DmD11    101 antennal disc ML-DmD20-c5    80 mixed discs ML-DmD4-c1    88 CNS ML-DmBG1-c1    86 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    42 ovary fGS/OSS    72 ovary OSC    103 ovary OSS    55 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    53 cold shock, 4-day adult    38 heat shock, 4-day adult    51 Cadmium 50 mM 6 hrs, larvae L3    29 Cadmium 50 mM 12 hrs, larvae L3    11 Cadmium 50 mM 48 hrs, 4-day adult    61 Cadmium 100 mM 48 hrs, 4-day adult    130 Copper 0.5 mM 12 hrs, larvae L3    25 Copper 15 mM 48 hrs, 4-day adult    117 Zinc 5 mM 12 hrs, larvae L3    29 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    99 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    122 Caffeine 25 mg/ml 48 hrs, 4-day adult    63 Paraquat 5 mM 48 hrs, 4-day adult    90 Paraquat 10 mM 48 hrs, 4-day adult    86 Rotenone 2 μg 12 hrs, larvae L3    28 Rotenone 8 μg 12 hrs, larvae L3    33 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (53) cold shock, 4-day adult  (38) heat shock, 4-day adult  (51) Cadmium 50 mM 6 hrs, larvae L3  (29) Cadmium 50 mM 12 hrs, larvae L3    11 Cadmium 50 mM 48 hrs, 4-day adult  (61) Cadmium 100 mM 48 hrs, 4-day adult  (130) Copper 0.5 mM 12 hrs, larvae L3    25 Copper 15 mM 48 hrs, 4-day adult  (117) Zinc 5 mM 12 hrs, larvae L3  (29) Zinc 4.5 mM 48 hrs, 4-day adult  (56) Ethanol 2.5% 3 hrs, larvae L3  (99) Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3  26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (122) Caffeine 25 mg/ml 48 hrs, 4-day adult  (63) Paraquat 5 mM 48 hrs, 4-day adult  (90) Paraquat 10 mM 48 hrs, 4-day adult  (86) Rotenone 2 μg 12 hrs, larvae L3  (28) Rotenone 8 μg 12 hrs, larvae L3  (33) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    53 cold shock, 4-day adult    38 heat shock, 4-day adult    51 Cadmium 50 mM 6 hrs, larvae L3    29 Cadmium 50 mM 12 hrs, larvae L3    11 Cadmium 50 mM 48 hrs, 4-day adult    61 Cadmium 100 mM 48 hrs, 4-day adult  (130) Copper 0.5 mM 12 hrs, larvae L3    25 Copper 15 mM 48 hrs, 4-day adult  (117) Zinc 5 mM 12 hrs, larvae L3    29 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    99 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (122) Caffeine 25 mg/ml 48 hrs, 4-day adult    63 Paraquat 5 mM 48 hrs, 4-day adult    90 Paraquat 10 mM 48 hrs, 4-day adult    86 Rotenone 2 μg 12 hrs, larvae L3    28 Rotenone 8 μg 12 hrs, larvae L3    33 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    53 cold shock, 4-day adult    38 heat shock, 4-day adult    51 Cadmium 50 mM 6 hrs, larvae L3    29 Cadmium 50 mM 12 hrs, larvae L3    11 Cadmium 50 mM 48 hrs, 4-day adult    61 Cadmium 100 mM 48 hrs, 4-day adult    130 Copper 0.5 mM 12 hrs, larvae L3    25 Copper 15 mM 48 hrs, 4-day adult    117 Zinc 5 mM 12 hrs, larvae L3    29 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    99 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    122 Caffeine 25 mg/ml 48 hrs, 4-day adult    63 Paraquat 5 mM 48 hrs, 4-day adult    90 Paraquat 10 mM 48 hrs, 4-day adult    86 Rotenone 2 μg 12 hrs, larvae L3    28 Rotenone 8 μg 12 hrs, larvae L3    33 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    53 cold shock, 4-day adult    38 heat shock, 4-day adult    51 Cadmium 50 mM 6 hrs, larvae L3    29 Cadmium 50 mM 12 hrs, larvae L3    11 Cadmium 50 mM 48 hrs, 4-day adult    61 Cadmium 100 mM 48 hrs, 4-day adult    130 Copper 0.5 mM 12 hrs, larvae L3    25 Copper 15 mM 48 hrs, 4-day adult    117 Zinc 5 mM 12 hrs, larvae L3    29 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    99 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    122 Caffeine 25 mg/ml 48 hrs, 4-day adult    63 Paraquat 5 mM 48 hrs, 4-day adult    90 Paraquat 10 mM 48 hrs, 4-day adult    86 Rotenone 2 μg 12 hrs, larvae L3    28 Rotenone 8 μg 12 hrs, larvae L3    33 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (53) cold shock, 4-day adult  (38) heat shock, 4-day adult  (51) Cadmium 50 mM 6 hrs, larvae L3  29 Cadmium 50 mM 12 hrs, larvae L3    11 Cadmium 50 mM 48 hrs, 4-day adult  (61) Cadmium 100 mM 48 hrs, 4-day adult  (130) Copper 0.5 mM 12 hrs, larvae L3    25 Copper 15 mM 48 hrs, 4-day adult  (117) Zinc 5 mM 12 hrs, larvae L3  29 Zinc 4.5 mM 48 hrs, 4-day adult  (56) Ethanol 2.5% 3 hrs, larvae L3  (99) Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3  26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (122) Caffeine 25 mg/ml 48 hrs, 4-day adult  (63) Paraquat 5 mM 48 hrs, 4-day adult  (90) Paraquat 10 mM 48 hrs, 4-day adult  (86) Rotenone 2 μg 12 hrs, larvae L3  28 Rotenone 8 μg 12 hrs, larvae L3  (33) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    53 cold shock, 4-day adult    38 heat shock, 4-day adult    51 Cadmium 50 mM 6 hrs, larvae L3    29 Cadmium 50 mM 12 hrs, larvae L3    11 Cadmium 50 mM 48 hrs, 4-day adult    61 Cadmium 100 mM 48 hrs, 4-day adult  130 Copper 0.5 mM 12 hrs, larvae L3    25 Copper 15 mM 48 hrs, 4-day adult  117 Zinc 5 mM 12 hrs, larvae L3    29 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    99 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  122 Caffeine 25 mg/ml 48 hrs, 4-day adult    63 Paraquat 5 mM 48 hrs, 4-day adult    90 Paraquat 10 mM 48 hrs, 4-day adult    86 Rotenone 2 μg 12 hrs, larvae L3    28 Rotenone 8 μg 12 hrs, larvae L3    33 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    53 cold shock, 4-day adult    38 heat shock, 4-day adult    51 Cadmium 50 mM 6 hrs, larvae L3    29 Cadmium 50 mM 12 hrs, larvae L3    11 Cadmium 50 mM 48 hrs, 4-day adult    61 Cadmium 100 mM 48 hrs, 4-day adult    130 Copper 0.5 mM 12 hrs, larvae L3    25 Copper 15 mM 48 hrs, 4-day adult    117 Zinc 5 mM 12 hrs, larvae L3    29 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    99 Ethanol 5% 3 hrs, larvae L3    20 Ethanol 10% 3 hrs, larvae L3    26 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    122 Caffeine 25 mg/ml 48 hrs, 4-day adult    63 Paraquat 5 mM 48 hrs, 4-day adult    90 Paraquat 10 mM 48 hrs, 4-day adult    86 Rotenone 2 μg 12 hrs, larvae L3    28 Rotenone 8 μg 12 hrs, larvae L3    33 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_13 mE1_20_mRNA_expression_cluster_02
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031020 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG12202-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal Nat1GD6743 lethal, with Scer\GAL4pnr-MD237 Nat1GD6743 lethal | prepupal stage Nat1G0311b lethal | pupal stage Nat1G0311b lethal | recessive Nat1G0311b Nat1PG85 Nat1PL3 viable Nat1EY07055 Sterility Allele fertile Nat1EY07055 Other Phenotypes Allele neuroanatomy defective | larval stage Nat1GD6743 Phenotype manifest in Allele embryonic/larval neuroblast | larval stage Nat1GD6743 ganglion mother cell | larval stage Nat1GD6743
Classical Alleles ( 5 )
For All Classical Alleles Show
Allele of Nat1 Class Mutagen Stocks Known lesion Nat1G0311b P-element activity 2 -- Nat15-HA-1900 1 -- Nat1EY07055 P-element activity 1 -- Nat1PG85 Delta2-3 0 -- Nat1PL3 Delta2-3 0 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Nat1 Class Mutagen Stocks Known lesion Nat1GD6743 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Nat1HMS01400 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Nat1KK101224 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes Nat1NIG.12202R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(1)Exel7468 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD6743} NA P{KK101224} NA P{NIG.12202R} NA P{TRiP.HMS01400} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}Nat1EY07055 NA miscellaneous insertions P{RS5}Nat15-HA-1900 NA insertion of enhancer trap P{lacW}Nat1G0311b No P{lacW}Nat1PL3 No insertion of enhancer trap binary system P{GawB}Nat1PG85 No
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
neurogenesis inferred from mutant phenotype (Neumüller et al., 2011)
Cellular Component
CV term Evidence References
mitotic spindle inferred from direct assay (Müller et al., 2010)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
peptide alpha-N-acetyltransferase activity inferred from sequence or structural similarity with EMBL:AL023781 (FlyBase, 1992-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
Nat1 - Bap60 experimental knowledge based (Guruharsha et al., 2011) Nat1 - CG9922 experimental knowledge based (Guruharsha et al., 2011) Nat1 - ZnT63C anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Nat1 - dalao experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Nat1 - san anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Nat1 - vnc experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Nat1 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 59236 DroID - A comprehensive database of gene and protein interactions. • FBgn0031020 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32934
Orthologs
OrthoDB Orthologs (42) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6QFWZM Dipteran inclusive ortholog search EOG6Q2DPJ Insect inclusive ortholog search EOG605QW1 Arthropod inclusive ortholog search EOG69GHXH Metazoa inclusive ortholog search EOG6MPWGW
Orthologs in Drosophila Species (EOG6QFWZM)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Nat1     Drosophila sechellia   Dsec\GM22959 Y   Drosophila erecta   Dere\GG19226 Y   Drosophila yakuba   Dyak\GE15844 Y   Drosophila ananassae   Dana\GF20491 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA11473 Y   Drosophila persimilis   Dper\GL14783 Y   Drosophila willistoni   Dwil\GK17986 Y   Drosophila virilis   Dvir\GJ15841 Y   Drosophila mojavensis   Dmoj\GI16441 Y   Drosophila grimshawi   Dgri\GH17872 Y
Orthologs in non-Drosophila Dipterans (EOG6Q2DPJ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL006087   Anopheles gambiae Malaria mosquito  Agam\AGAP002284   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ003426
Orthologs in non-Dipteran Insects (EOG605QW1)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB41465   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG015886   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH21659   Atta cephalotes Leafcutter ant  Acep\ACEP25696   Camponotus floridanus Florida carpenter ant  Cflo\CFLO17383   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL15037   Linepithema humile Argentine ant  Lhum\LH13770   Pogonomyrmex barbatus Red harvester ant  Pbar\PB24832   Solenopsis invicta Red fire ant  Sinv\SINV24733   Acyrthosiphon pisum Pea aphid  Apim\ACYPI003886   Bombyx mori Silkmoth  Bmor\BGIBMGA009240   Pediculus humanus Human body louse  Phum\PHUM117850   Tribolium castaneum Red flour beetle  Tcas\GLEAN_08190
Orthologs in non-Insect Arthropods (EOG69GHXH)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_190829   Ixodes scapularis Deer tick  Isca\ISCW000399
Orthologs in non-Arthropod Metazoa (EOG6MPWGW)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\hpo-29   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_008638gn   Danio rerio Zebrafish  Drer\naa15b   Danio rerio Zebrafish  Drer\naa15a   Xenopus tropicalis Western clawed frog  Xtro\naa15   Xenopus tropicalis Western clawed frog  Xtro\naa16   Gallus gallus Domestic chicken  Ggal\NAA16   Gallus gallus Domestic chicken  Ggal\NAA15   Mus musculus House mouse  Mmus\Naa16   Mus musculus House mouse  Mmus\Naa15   Rattus norvegicus Norway rat  Rnor\Naa15   Homo sapiens Human  Hsap\NAA15   Homo sapiens Human  Hsap\NARG1L
Human Orthologs (2)
Gene OMIM HGNC Hsap\NAA15     Hsap\NARG1L
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila sechellia Dsec\GM22959 Drosophila erecta Dere\GG19226 Drosophila yakuba Dyak\GE15844 Drosophila ananassae Dana\GF20491 Drosophila pseudoobscura pseudoobscura Dpse\GA11473 Drosophila persimilis Dper\GL14783 Drosophila willistoni Dwil\GK17986 Drosophila virilis Dvir\GJ15841 Drosophila mojavensis Dmoj\GI16441 Drosophila grimshawi Dgri\GH17872
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	10760 w67c23 P{lacW}Nat1G0311b/FM7c 16782 y1 w67c23 P{EPgy2}Nat1EY07055 34990 y1 sc* v1; P{TRiP.HMS01400}attP2
Kyoto	125461 w1118 P{RS5}Nat15-HA-1900 111754 y1 w* P{lacW}Nat1G0311b P{neoFRT}19A/FM7c; P{ey-FLP.N}5
VDRC	v17571 w1118; P{GD6743}v17571
Genomic Clones ( 2 )
	BACR10M08 BACR27L16 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 85 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	SD09860
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT03525 AT16991 AT28537 AT28759 GH09445 GH12826 GM10040 GM22685 GM24536 GM26132 GM30582 GM31647 LD07093 LD11153 LD15261 LD30511 LD41906 LD44186 LD46957 LD47556 LP15706 LP21246 RE06433 RE29539 RE29578 RE33166 RE35150 RE36025 RE67823 RE74868 SD01685 SD01972 SD02441 SD02881 SD04267 SD04764 SD04916 SD05807 SD05809 SD06948 SD08436 SD09553 SD10228 SD10296 SD10377 SD10435 SD16983 SD23908 SD25378 SD26345 SD26477
Other clones	71592 73270 80575 82445 162855 281446 CK01.28C.E8 EK057901 EK173212 EK201944 EK213620 EK215845 EK266738 EK306312 IP09579 IP15421 RP01116 RP001001247 RP001006361 RP001008709 RP001011024 RP001011667 RP001011877 RP001012176 RP001017355 RP001020495 RP001027304 RP001027342 RP001027432 RP001033495 RP001042684 RP001056632 SD04550
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0031020 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32934
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Nat1 CG12202 (Williams et al., 2003)
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_133156 RefSeq (Proteins) • NP_573384 DDBJ / EMBL / GenBank • AAF48957 AI543189 AW944609 CL527970 Entrez Gene - A searchable database of RefSeq genes. • 32934 UniProtKB/TrEMBL • Q9VWI2
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Tetratricopeptide TPR2 (IPR013105) Tetratricopeptide-like helical (IPR011990) Tetratricopeptide repeat-containing domain (IPR013026) Tetratricopeptide repeat (IPR019734) N-terminal acetyltransferase A, auxiliary subunit (IPR021183)
Linkouts
	BioGRID - A database of protein and genetic interactions • 59236 DroID - A comprehensive database of gene and protein interactions. • FBgn0031020 DRSC - Results from RNAi screens. • FBgn0031020 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031020 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG12202-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0031020 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32934 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32934 modMine - Data generated by the modENCODE project. • FBgn0031020
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	CG12202 (Williams et al., 2003, Bourbon et al., 2002, Peter et al., 2002, Gruber and Long, 2009, Grima et al., 2008, Keleman et al., 2009.8.5, Ni et al., 2011.7.19) dNat1 (Williams et al., 2003) l(1)G0311   Nat1 (Wang et al., 2008, Grima et al., 2008, Müller et al., 2010, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym	Nat1
Secondary FlyBase IDs
	FBgn0027223
References ( 28 )
Generate a list of	All references relating to this gene ( 28 )
List References by type	Research paper  ( 5 ) Supplementary material  ( 7 ) Personal communication to FlyBase  ( 10 ) Abstract  ( 1 ) FlyBase analysis  ( 2 ) Stock list  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...