Gene Dmel\CG12788

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General Information

Symbol

Dmel\CG12788

Species

D. melanogaster

Name

Annotation symbol

CG12788

Feature type

protein_coding_gene

FlyBase ID

FBgn0031041

Gene Model Status

Current

Stock availability

None publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

18D3-18D7

Sequence location

X:19,510,696..19,512,570 [-]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG12788 (FBgn0031041). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Chromatin associated protein KTI12. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, during early larval stages, in stages of adults of both sexes. This gene is annotated by FlyBase as a dicistronic gene, meaning that some or all of its transcripts encode two or more polypeptide-coding open reading frames (ORFs) , with each ORF assigned to a different gene. The distribution of RNA-Seq coverage data amongst the different encoded genes cannot be determined. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: adult ovary, adult testis. Gene sequence location is X:19510696..19512570.

User Contributed Data

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Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

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Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

18D3-18D7

Limits computationally determined from genome sequence between P{EP}EP1348&P{EP}e(y)3^EP1036 and P{EP}Sec61γ^EP1511

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG12788 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

gene_with_dicistronic_mRNA ; SO:0000722

Gene model reviewed during 5.45

Gene model reviewed during 5.49

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG12788-RA

FBtr0100291

NM_134485

1754

292

CG12788-RC

FBtr0332487

NM_001272783

1704

292

CG12788-RD

FBtr0339511

NM_001272782

1263

292

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG12788-PA

FBpp0099685

32.8

292

6.51

NP_608329

AAF48985

CG12788-PC

FBpp0304763

32.8

292

6.51

NP_001259712

AGB95552

CG12788-PD

FBpp0308594

32.8

292

6.51

NP_001259711

AGB95551

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Chromatin associated protein KTI12 (IPR013641)

P-loop containing nucleoside triphosphate hydrolase (IPR027417)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q9VWF7

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 1 -- 3

organism

(Fisher et al., 2012)

Comment:maternally deposited

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at moderate levels in the following post-embryonic organs or tissues: adult ovary, adult testis.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		29
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		6
head, virgin 4-day female		5
head, virgin 20-day female		4
head, mated 1-day female		6
head, mated 4-day female		5
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		7
head, mated 20-day male		6
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		8
digestive system, 4-day adult		9
digestive system, 20-day adult		7
fat body, larvae L3 wandering		4
fat body, white prepupae		7
fat body, pupae P8		10
carcass, larvae L3 wandering		9
carcass, 1-day adult		4
carcass, 4-day adult		7
carcass, 20-day adult		5
ovary, virgin 4-day female		23
ovary, mated 4-day female		22
testis, mated 4-day male		89
accessory gland, mated 4-day male		17
Expression Level Scale		Very low Low Moderate Moderately high High

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(29)
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		6
head, virgin 4-day female		5
head, virgin 20-day female		4
head, mated 1-day female		6
head, mated 4-day female		5
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		7
head, mated 20-day male		6
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		8
digestive system, 4-day adult		9
digestive system, 20-day adult		7
fat body, larvae L3 wandering		4
fat body, white prepupae		7
fat body, pupae P8		10
carcass, larvae L3 wandering		9
carcass, 1-day adult		4
carcass, 4-day adult		7
carcass, 20-day adult		5
ovary, virgin 4-day female		23
ovary, mated 4-day female		22
testis, mated 4-day male		(89)
accessory gland, mated 4-day male		17
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		29
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		6
head, virgin 4-day female		5
head, virgin 20-day female		4
head, mated 1-day female		6
head, mated 4-day female		5
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		7
head, mated 20-day male		6
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		8
digestive system, 4-day adult		9
digestive system, 20-day adult		7
fat body, larvae L3 wandering		4
fat body, white prepupae		7
fat body, pupae P8		10
carcass, larvae L3 wandering		9
carcass, 1-day adult		4
carcass, 4-day adult		7
carcass, 20-day adult		5
ovary, virgin 4-day female		23
ovary, mated 4-day female		22
testis, mated 4-day male		89
accessory gland, mated 4-day male		17
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		29
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		6
head, virgin 4-day female		5
head, virgin 20-day female		4
head, mated 1-day female		6
head, mated 4-day female		5
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		7
head, mated 20-day male		6
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		8
digestive system, 4-day adult		9
digestive system, 20-day adult		7
fat body, larvae L3 wandering		4
fat body, white prepupae		7
fat body, pupae P8		10
carcass, larvae L3 wandering		9
carcass, 1-day adult		4
carcass, 4-day adult		7
carcass, 20-day adult		5
ovary, virgin 4-day female		23
ovary, mated 4-day female		22
testis, mated 4-day male		89
accessory gland, mated 4-day male		17
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		29
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		6
head, virgin 4-day female		5
head, virgin 20-day female		4
head, mated 1-day female		6
head, mated 4-day female		5
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		7
head, mated 20-day male		6
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		8
digestive system, 4-day adult		9
digestive system, 20-day adult		7
fat body, larvae L3 wandering		4
fat body, white prepupae		7
fat body, pupae P8		10
carcass, larvae L3 wandering		9
carcass, 1-day adult		4
carcass, 4-day adult		7
carcass, 20-day adult		5
ovary, virgin 4-day female		23
ovary, mated 4-day female		22
testis, mated 4-day male		89
accessory gland, mated 4-day male		17
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		29
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		6
head, virgin 4-day female		5
head, virgin 20-day female		4
head, mated 1-day female		6
head, mated 4-day female		5
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		7
head, mated 20-day male		6
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		8
digestive system, 4-day adult		9
digestive system, 20-day adult		7
fat body, larvae L3 wandering		4
fat body, white prepupae		7
fat body, pupae P8		10
carcass, larvae L3 wandering		9
carcass, 1-day adult		4
carcass, 4-day adult		7
carcass, 20-day adult		5
ovary, virgin 4-day female		23
ovary, mated 4-day female		22
testis, mated 4-day male		(89)
accessory gland, mated 4-day male		17
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		29
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		6
head, virgin 4-day female		5
head, virgin 20-day female		4
head, mated 1-day female		6
head, mated 4-day female		5
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		7
head, mated 20-day male		6
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		8
digestive system, 4-day adult		9
digestive system, 20-day adult		7
fat body, larvae L3 wandering		4
fat body, white prepupae		7
fat body, pupae P8		10
carcass, larvae L3 wandering		9
carcass, 1-day adult		4
carcass, 4-day adult		7
carcass, 20-day adult		5
ovary, virgin 4-day female		23
ovary, mated 4-day female		22
testis, mated 4-day male		89
accessory gland, mated 4-day male		17
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		29
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		6
head, virgin 4-day female		5
head, virgin 20-day female		4
head, mated 1-day female		6
head, mated 4-day female		5
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		7
head, mated 20-day male		6
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		2
digestive system, larvae L3 wandering		4
digestive system, 1-day adult		8
digestive system, 4-day adult		9
digestive system, 20-day adult		7
fat body, larvae L3 wandering		4
fat body, white prepupae		7
fat body, pupae P8		10
carcass, larvae L3 wandering		9
carcass, 1-day adult		4
carcass, 4-day adult		7
carcass, 20-day adult		5
ovary, virgin 4-day female		23
ovary, mated 4-day female		22
testis, mated 4-day male		89
accessory gland, mated 4-day male		17
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, during early larval stages, in stages of adults of both sexes. This gene is annotated by FlyBase as a dicistronic gene, meaning that some or all of its transcripts encode two or more polypeptide-coding open reading frames (ORFs) , with each ORF assigned to a different gene. The distribution of RNA-Seq coverage data amongst the different encoded genes cannot be determined.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		31
embryo 02-04hr		17
embryo 04-06hr		22
embryo 06-08hr		27
embryo 08-10hr		27
embryo 10-12hr		40
embryo 12-14hr		21
embryo 14-16hr		20
embryo 16-18hr		19
embryo 18-20hr		19
embryo 20-22hr		24
embryo 22-24hr		19
larva L1		27
larva L2		21
larva L3 12hr old		15
larva L3 puffstage 1-2		8
larva L3 puffstage 3-6		9
larva L3 puffstage 7-9		9
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		13
pupae 2d postWPP		17
pupae 3d postWPP		18
pupae 4d postWPP		13
adult male 01day		17
adult male 05day		22
adult male 30day		17
adult female 01day		16
adult female 05day		23
adult female 30day		25
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		(31)
embryo 02-04hr		17
embryo 04-06hr		22
embryo 06-08hr		(27)
embryo 08-10hr		(27)
embryo 10-12hr		(40)
embryo 12-14hr		21
embryo 14-16hr		20
embryo 16-18hr		19
embryo 18-20hr		19
embryo 20-22hr		24
embryo 22-24hr		19
larva L1		(27)
larva L2		21
larva L3 12hr old		15
larva L3 puffstage 1-2		8
larva L3 puffstage 3-6		9
larva L3 puffstage 7-9		9
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		13
pupae 2d postWPP		17
pupae 3d postWPP		18
pupae 4d postWPP		13
adult male 01day		17
adult male 05day		22
adult male 30day		17
adult female 01day		16
adult female 05day		23
adult female 30day		25
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		31
embryo 02-04hr		17
embryo 04-06hr		22
embryo 06-08hr		27
embryo 08-10hr		27
embryo 10-12hr		40
embryo 12-14hr		21
embryo 14-16hr		20
embryo 16-18hr		19
embryo 18-20hr		19
embryo 20-22hr		24
embryo 22-24hr		19
larva L1		27
larva L2		21
larva L3 12hr old		15
larva L3 puffstage 1-2		8
larva L3 puffstage 3-6		9
larva L3 puffstage 7-9		9
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		13
pupae 2d postWPP		17
pupae 3d postWPP		18
pupae 4d postWPP		13
adult male 01day		17
adult male 05day		22
adult male 30day		17
adult female 01day		16
adult female 05day		23
adult female 30day		25
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		31
embryo 02-04hr		17
embryo 04-06hr		22
embryo 06-08hr		27
embryo 08-10hr		27
embryo 10-12hr		40
embryo 12-14hr		21
embryo 14-16hr		20
embryo 16-18hr		19
embryo 18-20hr		19
embryo 20-22hr		24
embryo 22-24hr		19
larva L1		27
larva L2		21
larva L3 12hr old		15
larva L3 puffstage 1-2		8
larva L3 puffstage 3-6		9
larva L3 puffstage 7-9		9
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		13
pupae 2d postWPP		17
pupae 3d postWPP		18
pupae 4d postWPP		13
adult male 01day		17
adult male 05day		22
adult male 30day		17
adult female 01day		16
adult female 05day		23
adult female 30day		25
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		31
embryo 02-04hr		17
embryo 04-06hr		22
embryo 06-08hr		27
embryo 08-10hr		27
embryo 10-12hr		40
embryo 12-14hr		21
embryo 14-16hr		20
embryo 16-18hr		19
embryo 18-20hr		19
embryo 20-22hr		24
embryo 22-24hr		19
larva L1		27
larva L2		21
larva L3 12hr old		15
larva L3 puffstage 1-2		8
larva L3 puffstage 3-6		9
larva L3 puffstage 7-9		9
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		13
pupae 2d postWPP		17
pupae 3d postWPP		18
pupae 4d postWPP		13
adult male 01day		17
adult male 05day		22
adult male 30day		17
adult female 01day		16
adult female 05day		23
adult female 30day		25
Expression Level Scale		Very low Low Moderate Moderately high High

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		31
embryo 02-04hr		17
embryo 04-06hr		22
embryo 06-08hr		27
embryo 08-10hr		27
embryo 10-12hr		(40)
embryo 12-14hr		21
embryo 14-16hr		20
embryo 16-18hr		19
embryo 18-20hr		19
embryo 20-22hr		24
embryo 22-24hr		19
larva L1		27
larva L2		21
larva L3 12hr old		15
larva L3 puffstage 1-2		8
larva L3 puffstage 3-6		9
larva L3 puffstage 7-9		9
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		13
pupae 2d postWPP		17
pupae 3d postWPP		18
pupae 4d postWPP		13
adult male 01day		17
adult male 05day		22
adult male 30day		17
adult female 01day		16
adult female 05day		23
adult female 30day		25
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		31
embryo 02-04hr		17
embryo 04-06hr		22
embryo 06-08hr		27
embryo 08-10hr		27
embryo 10-12hr		40
embryo 12-14hr		21
embryo 14-16hr		20
embryo 16-18hr		19
embryo 18-20hr		19
embryo 20-22hr		24
embryo 22-24hr		19
larva L1		27
larva L2		21
larva L3 12hr old		15
larva L3 puffstage 1-2		8
larva L3 puffstage 3-6		9
larva L3 puffstage 7-9		9
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		13
pupae 2d postWPP		17
pupae 3d postWPP		18
pupae 4d postWPP		13
adult male 01day		17
adult male 05day		22
adult male 30day		17
adult female 01day		16
adult female 05day		23
adult female 30day		25
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		31
embryo 02-04hr		17
embryo 04-06hr		22
embryo 06-08hr		27
embryo 08-10hr		27
embryo 10-12hr		40
embryo 12-14hr		21
embryo 14-16hr		20
embryo 16-18hr		19
embryo 18-20hr		19
embryo 20-22hr		24
embryo 22-24hr		19
larva L1		27
larva L2		21
larva L3 12hr old		15
larva L3 puffstage 1-2		8
larva L3 puffstage 3-6		9
larva L3 puffstage 7-9		9
white prepupae new		9
white prepupae 12hr		10
white prepupae 24hr		13
pupae 2d postWPP		17
pupae 3d postWPP		18
pupae 4d postWPP		13
adult male 01day		17
adult male 05day		22
adult male 30day		17
adult female 01day		16
adult female 05day		23
adult female 30day		25
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		19
Schneider line 2 Sg4		44
embryonic 1182-4H		14
embryonic GM2		13
embryonic Kc167		23
embryonic S1		16
embryonic S3		13
leg disc CME L1		35
wing disc CME-W2		12
wing disc ML-DmD8		12
wing disc ML-DmD9		12
wing disc ML-DmD16-c3		10
wing disc ML-DmD21		22
wing disc ML-DmD32		24
haltere disc ML-DmD17-c3		13
eye-antennal disc ML-DmD11		20
antennal disc ML-DmD20-c5		17
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		20
CNS ML-DmBG2-c2		18
tumorous blood cells mbn2		8
ovary fGS/OSS		9
ovary OSC		13
ovary OSS		4
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		19
Schneider line 2 Sg4		(44)
embryonic 1182-4H		14
embryonic GM2		13
embryonic Kc167		23
embryonic S1		16
embryonic S3		13
leg disc CME L1		(35)
wing disc CME-W2		12
wing disc ML-DmD8		12
wing disc ML-DmD9		12
wing disc ML-DmD16-c3		10
wing disc ML-DmD21		22
wing disc ML-DmD32		24
haltere disc ML-DmD17-c3		13
eye-antennal disc ML-DmD11		20
antennal disc ML-DmD20-c5		17
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		20
CNS ML-DmBG2-c2		18
tumorous blood cells mbn2		8
ovary fGS/OSS		9
ovary OSC		13
ovary OSS		4
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		19
Schneider line 2 Sg4		44
embryonic 1182-4H		14
embryonic GM2		13
embryonic Kc167		23
embryonic S1		16
embryonic S3		13
leg disc CME L1		35
wing disc CME-W2		12
wing disc ML-DmD8		12
wing disc ML-DmD9		12
wing disc ML-DmD16-c3		10
wing disc ML-DmD21		22
wing disc ML-DmD32		24
haltere disc ML-DmD17-c3		13
eye-antennal disc ML-DmD11		20
antennal disc ML-DmD20-c5		17
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		20
CNS ML-DmBG2-c2		18
tumorous blood cells mbn2		8
ovary fGS/OSS		9
ovary OSC		13
ovary OSS		4
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		19
Schneider line 2 Sg4		44
embryonic 1182-4H		14
embryonic GM2		13
embryonic Kc167		23
embryonic S1		16
embryonic S3		13
leg disc CME L1		35
wing disc CME-W2		12
wing disc ML-DmD8		12
wing disc ML-DmD9		12
wing disc ML-DmD16-c3		10
wing disc ML-DmD21		22
wing disc ML-DmD32		24
haltere disc ML-DmD17-c3		13
eye-antennal disc ML-DmD11		20
antennal disc ML-DmD20-c5		17
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		20
CNS ML-DmBG2-c2		18
tumorous blood cells mbn2		8
ovary fGS/OSS		9
ovary OSC		13
ovary OSS		4
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		19
Schneider line 2 Sg4		44
embryonic 1182-4H		14
embryonic GM2		13
embryonic Kc167		23
embryonic S1		16
embryonic S3		13
leg disc CME L1		35
wing disc CME-W2		12
wing disc ML-DmD8		12
wing disc ML-DmD9		12
wing disc ML-DmD16-c3		10
wing disc ML-DmD21		22
wing disc ML-DmD32		24
haltere disc ML-DmD17-c3		13
eye-antennal disc ML-DmD11		20
antennal disc ML-DmD20-c5		17
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		20
CNS ML-DmBG2-c2		18
tumorous blood cells mbn2		8
ovary fGS/OSS		9
ovary OSC		13
ovary OSS		4
Expression Level Scale		Very low Low Moderate Moderately high High

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		19
Schneider line 2 Sg4		(44)
embryonic 1182-4H		14
embryonic GM2		13
embryonic Kc167		23
embryonic S1		16
embryonic S3		13
leg disc CME L1		(35)
wing disc CME-W2		12
wing disc ML-DmD8		12
wing disc ML-DmD9		12
wing disc ML-DmD16-c3		10
wing disc ML-DmD21		22
wing disc ML-DmD32		24
haltere disc ML-DmD17-c3		13
eye-antennal disc ML-DmD11		20
antennal disc ML-DmD20-c5		17
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		20
CNS ML-DmBG2-c2		18
tumorous blood cells mbn2		8
ovary fGS/OSS		9
ovary OSC		13
ovary OSS		4
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		19
Schneider line 2 Sg4		44
embryonic 1182-4H		14
embryonic GM2		13
embryonic Kc167		23
embryonic S1		16
embryonic S3		13
leg disc CME L1		35
wing disc CME-W2		12
wing disc ML-DmD8		12
wing disc ML-DmD9		12
wing disc ML-DmD16-c3		10
wing disc ML-DmD21		22
wing disc ML-DmD32		24
haltere disc ML-DmD17-c3		13
eye-antennal disc ML-DmD11		20
antennal disc ML-DmD20-c5		17
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		20
CNS ML-DmBG2-c2		18
tumorous blood cells mbn2		8
ovary fGS/OSS		9
ovary OSC		13
ovary OSS		4
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		19
Schneider line 2 Sg4		44
embryonic 1182-4H		14
embryonic GM2		13
embryonic Kc167		23
embryonic S1		16
embryonic S3		13
leg disc CME L1		35
wing disc CME-W2		12
wing disc ML-DmD8		12
wing disc ML-DmD9		12
wing disc ML-DmD16-c3		10
wing disc ML-DmD21		22
wing disc ML-DmD32		24
haltere disc ML-DmD17-c3		13
eye-antennal disc ML-DmD11		20
antennal disc ML-DmD20-c5		17
mixed discs ML-DmD4-c1		15
CNS ML-DmBG1-c1		20
CNS ML-DmBG2-c2		18
tumorous blood cells mbn2		8
ovary fGS/OSS		9
ovary OSC		13
ovary OSS		4
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		9
cold shock, 4-day adult		7
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		13
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		19
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		21
Ethanol 5% 3 hrs, larvae L3		6
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		21
Caffeine 25 mg/ml 48 hrs, 4-day adult		10
Paraquat 5 mM 48 hrs, 4-day adult		19
Paraquat 10 mM 48 hrs, 4-day adult		20
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		9
cold shock, 4-day adult		7
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		13
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		19
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		21
Ethanol 5% 3 hrs, larvae L3		6
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		21
Caffeine 25 mg/ml 48 hrs, 4-day adult		10
Paraquat 5 mM 48 hrs, 4-day adult		19
Paraquat 10 mM 48 hrs, 4-day adult		20
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		9
cold shock, 4-day adult		7
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		13
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		19
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		21
Ethanol 5% 3 hrs, larvae L3		6
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		21
Caffeine 25 mg/ml 48 hrs, 4-day adult		10
Paraquat 5 mM 48 hrs, 4-day adult		19
Paraquat 10 mM 48 hrs, 4-day adult		20
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		9
cold shock, 4-day adult		7
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		13
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		19
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		21
Ethanol 5% 3 hrs, larvae L3		6
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		21
Caffeine 25 mg/ml 48 hrs, 4-day adult		10
Paraquat 5 mM 48 hrs, 4-day adult		19
Paraquat 10 mM 48 hrs, 4-day adult		20
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		9
cold shock, 4-day adult		7
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		13
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		19
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		21
Ethanol 5% 3 hrs, larvae L3		6
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		21
Caffeine 25 mg/ml 48 hrs, 4-day adult		10
Paraquat 5 mM 48 hrs, 4-day adult		19
Paraquat 10 mM 48 hrs, 4-day adult		20
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		9
cold shock, 4-day adult		7
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		13
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		19
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		21
Ethanol 5% 3 hrs, larvae L3		6
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		21
Caffeine 25 mg/ml 48 hrs, 4-day adult		10
Paraquat 5 mM 48 hrs, 4-day adult		19
Paraquat 10 mM 48 hrs, 4-day adult		20
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		9
cold shock, 4-day adult		7
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		13
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		19
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		21
Ethanol 5% 3 hrs, larvae L3		6
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		21
Caffeine 25 mg/ml 48 hrs, 4-day adult		10
Paraquat 5 mM 48 hrs, 4-day adult		19
Paraquat 10 mM 48 hrs, 4-day adult		20
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		9
cold shock, 4-day adult		7
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		13
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		19
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		7
Zinc 4.5 mM 48 hrs, 4-day adult		9
Ethanol 2.5% 3 hrs, larvae L3		21
Ethanol 5% 3 hrs, larvae L3		6
Ethanol 10% 3 hrs, larvae L3		10
Caffeine 1.5 mg/ml 4 hrs, larvae L3		4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		21
Caffeine 25 mg/ml 48 hrs, 4-day adult		10
Paraquat 5 mM 48 hrs, 4-day adult		19
Paraquat 10 mM 48 hrs, 4-day adult		20
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010)

mE2_34_mRNA_expression_cluster_20

External Data & Images

Linkouts

BDGP expression data

•

SD05444

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0031041

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG33066-RC;CG33066-RA

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of CG12788	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG12788	Class	Mutagen	Stocks	Known lesion
CG12788^NIG.12788R		in vitro construct - RNAi in vitro construct - regulatory fusion	0	Yes

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

There is no information supporting a biological process, cellular component or molecular function term for this gene.

(Based on a review of available data before: 2006)

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

gene_with_dicistronic_mRNA

(FlyBase Genome Annotators, 2002-2003)

nuclear_gene

protein_coding_gene

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG12788 allele

Gene

References

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

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FBgn0031041

Orthologs

OrthoDB Orthologs (20) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG6M663T

Dipteran inclusive ortholog search

EOG6V178Q

Insect inclusive ortholog search

EOG6BG7RT

Arthropod inclusive ortholog search

EOG6PG4GR

Metazoa inclusive ortholog search

EOG6N0H8G

Orthologs in Drosophila Species (EOG6M663T)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA22688

Drosophila persimilis

Dper\GL27106

Drosophila virilis

Dvir\GJ15608

Drosophila mojavensis

Dmoj\GI11009

Drosophila grimshawi

Dgri\GH24035

Orthologs in non-Drosophila Dipterans (EOG6V178Q)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL002489

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ010839

Orthologs in non-Dipteran Insects (EOG6BG7RT)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Pediculus humanus

Human body louse

Phum\PHUM297960

Orthologs in non-Insect Arthropods (EOG6PG4GR)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Ixodes scapularis

Deer tick

Isca\ISCW010109

Orthologs in non-Arthropod Metazoa (EOG6N0H8G)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_026689gn

Xenopus tropicalis

Western clawed frog

Xtro\pstk

Gallus gallus

Domestic chicken

Ggal\PSTK

Mus musculus

House mouse

Mmus\Pstk

Rattus norvegicus

Norway rat

Rnor\RGD1564300

Homo sapiens

Human

Hsap\PSTK

Human Orthologs (1)

Gene

OMIM

HGNC

Hsap\PSTK

AAA Orthologs (9) based on analysis using Dmel annotation version 4.3

Organism

Gene

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA22688

Drosophila persimilis

Dper\GL27106

Drosophila virilis

Dvir\GJ15608

Drosophila mojavensis

Dmoj\GI11009

Drosophila grimshawi

Dgri\GH24035

Stocks & Reagents

Stocks Listed in FlyBase ( 0 )

Genomic Clones ( 2 )

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 36 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

SD05444

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

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FBgn0031041

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

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3772080

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Dicistronic annotation CG33066 split out into separate annotations for each open reading frame, CG17767 and CG12788, in release 4.2 of the genome annotation. CG17767 corresponds to Tim9b.

(FlyBase Genome Annotators, 2005)

One or more of the processed transcripts for this gene contain(s) two non-overlapping open reading frames (ORFs). The non-overlapping ORFs are represented by Tim9b and CG12788.

(FlyBase Genome Annotators, 2002-2003)

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

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RefSeq (Proteins)

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DDBJ / EMBL / GenBank

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Entrez Gene - A searchable database of RefSeq genes.

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UniProtKB/TrEMBL

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Q9VWF7

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

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Chromatin associated protein KTI12 (IPR013641)

P-loop containing nucleoside triphosphate hydrolase (IPR027417)

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

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SD05444

Linkouts

DroID - A comprehensive database of gene and protein interactions.

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FBgn0031041

DRSC - Results from RNAi screens.

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FBgn0031041

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

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FBgn0031041

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

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CG33066-RC;CG33066-RA

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

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FBgn0031041

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

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3772080

modMine - Data generated by the modENCODE project.

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FBgn0031041

Synonyms & Secondary IDs ( 4 )

Reported As

Symbol Synonym

CG12788

(Hayden and Bosco, 2008, Japanese National Institute of Genetics, 2012.5.21)

CG33066

Dromel_CG12788_CG17767_FBtr0074_tim9b_mORF

(Hayden and Bosco, 2008)

PSTK

(Chapple and Guigó, 2008)

Name Synonym

Secondary FlyBase IDs

FBgn0053066
FBpp0074534
FBpp0074535
FBpp0074536
FBtr0074765
FBtr0074766
FBtr0074767

References ( 12 )

Research paper

Chapple and Guigó, 2008, PLoS ONE 3(8): e2968: Relaxation of selective constraints causes independent selenoprotein extinction in insect genomes. [FBrf0205649]
Hayden and Bosco, 2008, BMC Genomics 9: 61: Comparative genomic analysis of novel conserved peptide upstream open reading frames in Drosophila melanogaster and other dipteran species. [FBrf0204849]

Supplementary material

The modENCODE Consortium, 2010, Science 330(6012):: DataS14: Gene co-expression clusters. [FBrf0213979]
Hayden and Bosco, 2008, BMC Genomics:: File 1: Conserved peptide uORF and associated mORF amino acid sequences in Drosophila melanogaster. [FBrf0205942]

Personal communication to FlyBase

Misra, 2001.8.10, New merges.: New merges. [FBrf0138591]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file): Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]

FlyBase analysis

FlyBase Genome Annotators, 2005, Changes affecting gene model number or type in release 4.2 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in release 4.2 of the annotated D.melanogaster genome. [FBrf0182792]
FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886]
FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase.: Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398]

Stock list

Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY.: RNAi stocks available from NIG-FLY. [FBrf0218457]

Website

Fisher et al., 2012, BDGP insitu homepage: BDGP insitu homepage [FBrf0219073]