A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\CG3609

General Information
SymbolDmel\CG3609SpeciesD. melanogaster
NameAnnotation symbolCG3609
Feature typeprotein_coding_geneFlyBase IDFBgn0031418
Gene Model StatusCurrent Stock availability 9 publicly available
Genomic Location
Chromosome (arm)2LRecombination map
Cytogenetic map22E1-22E1Sequence location2L:2,372,455..2,374,627 [-]

Genomic Maps

GBrowse View Help
Beta
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol Dmel\CG3609 (FBgn0031418). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: nucleotide binding; oxidoreductase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: oxidation-reduction process. 8 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: NAD(P)-binding domain; Oxidoreductase, C-terminal; Oxidoreductase, N-terminal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult midgut, adult Malpighian tubules, adult heart, adult fat body, larval/adult salivary gland, adult spermathecae, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval midgut, larval/adult hindgut, larval Malpighian tubules, larval trachea, adult ovary, adult male reproductive system, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1628271_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG3609. Gene sequence location is 2L:2372455..2374627.

User Contributed Data
hide Recent Updates
Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
Update Feed
Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
22E1-22E1  
Limits computationally determined from genome sequence between P{lacW}Rab5k08232 and P{PZ}dpp10638  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\CG3609 for information on other features GBrowse View Help
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0330667 FBtr0077792 FBtr0303027 FBtr0331441 FBtr0077791 FBtr0077764 FBtr0331438 FBtr0077765 FBtr0077766 FBtr0331437 FBpp0077469 FBpp0303517 FBpp0303858 FBpp0077468 FBpp0292146 FBpp0077444 FBti0124517 FBti0046835 FBti0041588 FBti0046834 FBti0067090 FBti0066828 FBti0124518 FBti0041574 FBti0115467 FBti0052888 FBti0067430 FBti0025713 FBti0023381 FBti0124519_1 FBti0124519_2 FBti0111612 FBti0026348
Comments on Gene Model
Gene model reviewed during 5.44
Low-frequency junction(s) not annotated.
Annotated transcripts do not represent all supported alternative splices within 5' UTR.
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0077791
  1223
  335
FBtr0303027
  1099
  335
FBtr0331441
  1210
  335
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0077468  
37.3  
335  
7.69  
FBpp0292146  
37.3  
335  
7.69  
FBpp0303858  
37.3  
335  
7.69  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)


   Styles
   Scales

Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult midgut, adult Malpighian tubules, adult heart, adult fat body, larval/adult salivary gland, adult spermathecae, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval midgut, larval/adult hindgut, larval Malpighian tubules, larval trachea, adult ovary, adult male reproductive system, larval carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 134.4
Larval Midgut
 
 359
Larval Hindgut
 
 197.3
Larval Malpighian Tubules
 
 331.1
Larval Fat Body
 
 70.8
Larval Salivary Gland
 
 606.9
Larval Trachea
 
 375.1
Larval Carcass
 
 261.05
Adult Head
 
 467.5
Adult Eye
 
 212.825
Adult Brain
 
 112.6
Adult Thoracic-Abdominal Ganglion
 
 148.3
Adult Crop
 
 478
Adult Midgut
 
 2862
Adult Hindgut
 
 443.7
Adult Malpighian Tubules
 
 1195.5
Adult Fat Body
 
 1160.1
Adult Salivary Gland
 
 933.2
Adult Heart
 
 1108.15
Adult VirginFemale Spermatheca
 
 904.7
Adult InseminatedFemale Spermatheca
 
 545.3
Adult Ovary
 
 188.5
Adult Testis
 
 138.6
Adult Male Accessory Gland
 
 282.4
Adult Carcass
 
 1299.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 134.4
Larval Midgut
 
 359
Larval Hindgut
 
 197.3
Larval Malpighian Tubules
 
 331.1
Larval Fat Body
 
 70.8
Larval Salivary Gland
 (606.9)
Larval Trachea
 
 375.1
Larval Carcass
 
 261.05
Adult Head
 
 467.5
Adult Eye
 
 212.825
Adult Brain
 
 112.6
Adult Thoracic-Abdominal Ganglion
 
 148.3
Adult Crop
 
 478
Adult Midgut
 (2862)
Adult Hindgut
 
 443.7
Adult Malpighian Tubules
 (1195.5)
Adult Fat Body
 (1160.1)
Adult Salivary Gland
 (933.2)
Adult Heart
 (1108.15)
Adult VirginFemale Spermatheca
 (904.7)
Adult InseminatedFemale Spermatheca
 (545.3)
Adult Ovary
 
 188.5
Adult Testis
 
 138.6
Adult Male Accessory Gland
 
 282.4
Adult Carcass
 (1299.5)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 134.4
Larval Midgut
 
 359
Larval Hindgut
 
 197.3
Larval Malpighian Tubules
 
 331.1
Larval Fat Body
 
 70.8
Larval Salivary Gland
 
 606.9
Larval Trachea
 
 375.1
Larval Carcass
 
 261.05
Adult Head
 
 467.5
Adult Eye
 
 212.825
Adult Brain
 
 112.6
Adult Thoracic-Abdominal Ganglion
 
 148.3
Adult Crop
 
 478
Adult Midgut
 (2862)
Adult Hindgut
 
 443.7
Adult Malpighian Tubules
 (1195.5)
Adult Fat Body
 (1160.1)
Adult Salivary Gland
 
 933.2
Adult Heart
 (1108.15)
Adult VirginFemale Spermatheca
 
 904.7
Adult InseminatedFemale Spermatheca
 
 545.3
Adult Ovary
 
 188.5
Adult Testis
 
 138.6
Adult Male Accessory Gland
 
 282.4
Adult Carcass
 (1299.5)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 134.4
Larval Midgut
 
 359
Larval Hindgut
 
 197.3
Larval Malpighian Tubules
 
 331.1
Larval Fat Body
 
 70.8
Larval Salivary Gland
 
 606.9
Larval Trachea
 
 375.1
Larval Carcass
 
 261.05
Adult Head
 
 467.5
Adult Eye
 
 212.825
Adult Brain
 
 112.6
Adult Thoracic-Abdominal Ganglion
 
 148.3
Adult Crop
 
 478
Adult Midgut
 
 2862
Adult Hindgut
 
 443.7
Adult Malpighian Tubules
 
 1195.5
Adult Fat Body
 
 1160.1
Adult Salivary Gland
 
 933.2
Adult Heart
 
 1108.15
Adult VirginFemale Spermatheca
 
 904.7
Adult InseminatedFemale Spermatheca
 
 545.3
Adult Ovary
 
 188.5
Adult Testis
 
 138.6
Adult Male Accessory Gland
 
 282.4
Adult Carcass
 
 1299.5
Expression Level Scale
 Very high 
log, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 134.4
Larval Midgut
 
 359
Larval Hindgut
 
 197.3
Larval Malpighian Tubules
 
 331.1
Larval Fat Body
 
 70.8
Larval Salivary Gland
 
 606.9
Larval Trachea
 
 375.1
Larval Carcass
 
 261.05
Adult Head
 
 467.5
Adult Eye
 
 212.825
Adult Brain
 
 112.6
Adult Thoracic-Abdominal Ganglion
 
 148.3
Adult Crop
 
 478
Adult Midgut
 
 2862
Adult Hindgut
 
 443.7
Adult Malpighian Tubules
 
 1195.5
Adult Fat Body
 
 1160.1
Adult Salivary Gland
 
 933.2
Adult Heart
 
 1108.15
Adult VirginFemale Spermatheca
 
 904.7
Adult InseminatedFemale Spermatheca
 
 545.3
Adult Ovary
 
 188.5
Adult Testis
 
 138.6
Adult Male Accessory Gland
 
 282.4
Adult Carcass
 
 1299.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 134.4
Larval Midgut
 
 359
Larval Hindgut
 
 197.3
Larval Malpighian Tubules
 
 331.1
Larval Fat Body
 
 70.8
Larval Salivary Gland
 606.9
Larval Trachea
 
 375.1
Larval Carcass
 
 261.05
Adult Head
 
 467.5
Adult Eye
 
 212.825
Adult Brain
 
 112.6
Adult Thoracic-Abdominal Ganglion
 
 148.3
Adult Crop
 
 478
Adult Midgut
 (2862)
Adult Hindgut
 
 443.7
Adult Malpighian Tubules
 (1195.5)
Adult Fat Body
 (1160.1)
Adult Salivary Gland
 (933.2)
Adult Heart
 (1108.15)
Adult VirginFemale Spermatheca
 (904.7)
Adult InseminatedFemale Spermatheca
 545.3
Adult Ovary
 
 188.5
Adult Testis
 
 138.6
Adult Male Accessory Gland
 
 282.4
Adult Carcass
 (1299.5)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 134.4
Larval Midgut
 
 359
Larval Hindgut
 
 197.3
Larval Malpighian Tubules
 
 331.1
Larval Fat Body
 
 70.8
Larval Salivary Gland
 
 606.9
Larval Trachea
 
 375.1
Larval Carcass
 
 261.05
Adult Head
 
 467.5
Adult Eye
 
 212.825
Adult Brain
 
 112.6
Adult Thoracic-Abdominal Ganglion
 
 148.3
Adult Crop
 
 478
Adult Midgut
 (2862)
Adult Hindgut
 
 443.7
Adult Malpighian Tubules
 1195.5
Adult Fat Body
 1160.1
Adult Salivary Gland
 
 933.2
Adult Heart
 1108.15
Adult VirginFemale Spermatheca
 
 904.7
Adult InseminatedFemale Spermatheca
 
 545.3
Adult Ovary
 
 188.5
Adult Testis
 
 138.6
Adult Male Accessory Gland
 
 282.4
Adult Carcass
 1299.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 134.4
Larval Midgut
 
 359
Larval Hindgut
 
 197.3
Larval Malpighian Tubules
 
 331.1
Larval Fat Body
 
 70.8
Larval Salivary Gland
 
 606.9
Larval Trachea
 
 375.1
Larval Carcass
 
 261.05
Adult Head
 
 467.5
Adult Eye
 
 212.825
Adult Brain
 
 112.6
Adult Thoracic-Abdominal Ganglion
 
 148.3
Adult Crop
 
 478
Adult Midgut
 
 2862
Adult Hindgut
 
 443.7
Adult Malpighian Tubules
 
 1195.5
Adult Fat Body
 
 1160.1
Adult Salivary Gland
 
 933.2
Adult Heart
 
 1108.15
Adult VirginFemale Spermatheca
 
 904.7
Adult InseminatedFemale Spermatheca
 
 545.3
Adult Ovary
 
 188.5
Adult Testis
 
 138.6
Adult Male Accessory Gland
 
 282.4
Adult Carcass
 
 1299.5
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 467.5
 
NA 
Eye
 
 212.825
 
NA 
Brain
 
 112.6
 
134.4 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 148.3
 
NA 
Crop
 
 478
 
359 
Midgut
 
 2862
 
197.3 
Hindgut
 
 443.7
 
331.1 
Malpighian Tubules
 
 1195.5
 
70.8 
Fat Body
 
 1160.1
 
606.9 
Salivary Gland
 
 933.2
 
NA 
Heart
 
 1108.15
 
375.1 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 904.7
 
NA 
InseminatedFemale Spermatheca
 
 545.3
 
NA 
Ovary
 
 188.5
 
NA 
Testis
 
 138.6
 
NA 
Male Accessory Gland
 
 282.4
 
261.05 
Carcass
 
 1299.5

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 31
central nervous system, larvae L3
 
 22
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 
 49
head, virgin 4-day female
 
 18
head, virgin 20-day female
 
 23
head, mated 1-day female
 
 27
head, mated 4-day female
 
 12
head, mated 20-day female
 
 27
head, mated 1-day male
 
 31
head, mated 4-day male
 
 29
head, mated 20-day male
 
 46
salivary gland, larvae L3 wandering
 
 35
salivary gland, white prepupae
 
 33
digestive system, larvae L3 wandering
 
 16
digestive system, 1-day adult
 
 112
digestive system, 4-day adult
 
 83
digestive system, 20-day adult
 
 222
fat body, larvae L3 wandering
 
 8
fat body, white prepupae
 
 6
fat body, pupae P8
 
 40
carcass, larvae L3 wandering
 
 24
carcass, 1-day adult
 
 38
carcass, 4-day adult
 
 32
carcass, 20-day adult
 
 37
ovary, virgin 4-day female
 
 34
ovary, mated 4-day female
 
 25
testis, mated 4-day male
 
 53
accessory gland, mated 4-day male
 
 35
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (31)
central nervous system, larvae L3
 
 22
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 (49)
head, virgin 4-day female
 
 18
head, virgin 20-day female
 
 23
head, mated 1-day female
 (27)
head, mated 4-day female
 
 12
head, mated 20-day female
 (27)
head, mated 1-day male
 (31)
head, mated 4-day male
 (29)
head, mated 20-day male
 (46)
salivary gland, larvae L3 wandering
 (35)
salivary gland, white prepupae
 (33)
digestive system, larvae L3 wandering
 
 16
digestive system, 1-day adult
 (112)
digestive system, 4-day adult
 (83)
digestive system, 20-day adult
 (222)
fat body, larvae L3 wandering
 
 8
fat body, white prepupae
 
 6
fat body, pupae P8
 (40)
carcass, larvae L3 wandering
 
 24
carcass, 1-day adult
 (38)
carcass, 4-day adult
 (32)
carcass, 20-day adult
 (37)
ovary, virgin 4-day female
 (34)
ovary, mated 4-day female
 
 25
testis, mated 4-day male
 (53)
accessory gland, mated 4-day male
 (35)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 31
central nervous system, larvae L3
 
 22
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 
 49
head, virgin 4-day female
 
 18
head, virgin 20-day female
 
 23
head, mated 1-day female
 
 27
head, mated 4-day female
 
 12
head, mated 20-day female
 
 27
head, mated 1-day male
 
 31
head, mated 4-day male
 
 29
head, mated 20-day male
 
 46
salivary gland, larvae L3 wandering
 
 35
salivary gland, white prepupae
 
 33
digestive system, larvae L3 wandering
 
 16
digestive system, 1-day adult
 (112)
digestive system, 4-day adult
 
 83
digestive system, 20-day adult
 (222)
fat body, larvae L3 wandering
 
 8
fat body, white prepupae
 
 6
fat body, pupae P8
 
 40
carcass, larvae L3 wandering
 
 24
carcass, 1-day adult
 
 38
carcass, 4-day adult
 
 32
carcass, 20-day adult
 
 37
ovary, virgin 4-day female
 
 34
ovary, mated 4-day female
 
 25
testis, mated 4-day male
 
 53
accessory gland, mated 4-day male
 
 35
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 31
central nervous system, larvae L3
 
 22
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 
 49
head, virgin 4-day female
 
 18
head, virgin 20-day female
 
 23
head, mated 1-day female
 
 27
head, mated 4-day female
 
 12
head, mated 20-day female
 
 27
head, mated 1-day male
 
 31
head, mated 4-day male
 
 29
head, mated 20-day male
 
 46
salivary gland, larvae L3 wandering
 
 35
salivary gland, white prepupae
 
 33
digestive system, larvae L3 wandering
 
 16
digestive system, 1-day adult
 
 112
digestive system, 4-day adult
 
 83
digestive system, 20-day adult
 
 222
fat body, larvae L3 wandering
 
 8
fat body, white prepupae
 
 6
fat body, pupae P8
 
 40
carcass, larvae L3 wandering
 
 24
carcass, 1-day adult
 
 38
carcass, 4-day adult
 
 32
carcass, 20-day adult
 
 37
ovary, virgin 4-day female
 
 34
ovary, mated 4-day female
 
 25
testis, mated 4-day male
 
 53
accessory gland, mated 4-day male
 
 35
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 31
central nervous system, larvae L3
 
 22
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 
 49
head, virgin 4-day female
 
 18
head, virgin 20-day female
 
 23
head, mated 1-day female
 
 27
head, mated 4-day female
 
 12
head, mated 20-day female
 
 27
head, mated 1-day male
 
 31
head, mated 4-day male
 
 29
head, mated 20-day male
 
 46
salivary gland, larvae L3 wandering
 
 35
salivary gland, white prepupae
 
 33
digestive system, larvae L3 wandering
 
 16
digestive system, 1-day adult
 
 112
digestive system, 4-day adult
 
 83
digestive system, 20-day adult
 
 222
fat body, larvae L3 wandering
 
 8
fat body, white prepupae
 
 6
fat body, pupae P8
 
 40
carcass, larvae L3 wandering
 
 24
carcass, 1-day adult
 
 38
carcass, 4-day adult
 
 32
carcass, 20-day adult
 
 37
ovary, virgin 4-day female
 
 34
ovary, mated 4-day female
 
 25
testis, mated 4-day male
 
 53
accessory gland, mated 4-day male
 
 35
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 31
central nervous system, larvae L3
 
 22
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 (49)
head, virgin 4-day female
 
 18
head, virgin 20-day female
 
 23
head, mated 1-day female
 27
head, mated 4-day female
 
 12
head, mated 20-day female
 27
head, mated 1-day male
 31
head, mated 4-day male
 29
head, mated 20-day male
 (46)
salivary gland, larvae L3 wandering
 (35)
salivary gland, white prepupae
 (33)
digestive system, larvae L3 wandering
 
 16
digestive system, 1-day adult
 (112)
digestive system, 4-day adult
 (83)
digestive system, 20-day adult
 (222)
fat body, larvae L3 wandering
 
 8
fat body, white prepupae
 
 6
fat body, pupae P8
 (40)
carcass, larvae L3 wandering
 
 24
carcass, 1-day adult
 (38)
carcass, 4-day adult
 32
carcass, 20-day adult
 (37)
ovary, virgin 4-day female
 (34)
ovary, mated 4-day female
 
 25
testis, mated 4-day male
 (53)
accessory gland, mated 4-day male
 (35)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 31
central nervous system, larvae L3
 
 22
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 
 49
head, virgin 4-day female
 
 18
head, virgin 20-day female
 
 23
head, mated 1-day female
 
 27
head, mated 4-day female
 
 12
head, mated 20-day female
 
 27
head, mated 1-day male
 
 31
head, mated 4-day male
 
 29
head, mated 20-day male
 
 46
salivary gland, larvae L3 wandering
 
 35
salivary gland, white prepupae
 
 33
digestive system, larvae L3 wandering
 
 16
digestive system, 1-day adult
 112
digestive system, 4-day adult
 
 83
digestive system, 20-day adult
 (222)
fat body, larvae L3 wandering
 
 8
fat body, white prepupae
 
 6
fat body, pupae P8
 
 40
carcass, larvae L3 wandering
 
 24
carcass, 1-day adult
 
 38
carcass, 4-day adult
 
 32
carcass, 20-day adult
 
 37
ovary, virgin 4-day female
 
 34
ovary, mated 4-day female
 
 25
testis, mated 4-day male
 
 53
accessory gland, mated 4-day male
 
 35
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 31
central nervous system, larvae L3
 
 22
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 
 49
head, virgin 4-day female
 
 18
head, virgin 20-day female
 
 23
head, mated 1-day female
 
 27
head, mated 4-day female
 
 12
head, mated 20-day female
 
 27
head, mated 1-day male
 
 31
head, mated 4-day male
 
 29
head, mated 20-day male
 
 46
salivary gland, larvae L3 wandering
 
 35
salivary gland, white prepupae
 
 33
digestive system, larvae L3 wandering
 
 16
digestive system, 1-day adult
 
 112
digestive system, 4-day adult
 
 83
digestive system, 20-day adult
 
 222
fat body, larvae L3 wandering
 
 8
fat body, white prepupae
 
 6
fat body, pupae P8
 
 40
carcass, larvae L3 wandering
 
 24
carcass, 1-day adult
 
 38
carcass, 4-day adult
 
 32
carcass, 20-day adult
 
 37
ovary, virgin 4-day female
 
 34
ovary, mated 4-day female
 
 25
testis, mated 4-day male
 
 53
accessory gland, mated 4-day male
 
 35
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in stages of adults of both sexes.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 74
embryo 02-04hr
 
 91
embryo 04-06hr
 
 52
embryo 06-08hr
 
 27
embryo 08-10hr
 
 41
embryo 10-12hr
 
 97
embryo 12-14hr
 
 68
embryo 14-16hr
 
 104
embryo 16-18hr
 
 72
embryo 18-20hr
 
 171
embryo 20-22hr
 
 530
embryo 22-24hr
 
 441
larva L1
 
 459
larva L2
 
 384
larva L3 12hr old
 
 378
larva L3 puffstage 1-2
 
 65
larva L3 puffstage 3-6
 
 35
larva L3 puffstage 7-9
 
 24
white prepupae new
 
 23
white prepupae 12hr
 
 66
white prepupae 24hr
 
 47
pupae 2d postWPP
 
 40
pupae 3d postWPP
 
 34
pupae 4d postWPP
 
 221
adult male 01day
 
 296
adult male 05day
 
 154
adult male 30day
 
 140
adult female 01day
 
 247
adult female 05day
 
 72
adult female 30day
 
 73
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (74)
embryo 02-04hr
 (91)
embryo 04-06hr
 (52)
embryo 06-08hr
 (27)
embryo 08-10hr
 (41)
embryo 10-12hr
 (97)
embryo 12-14hr
 (68)
embryo 14-16hr
 (104)
embryo 16-18hr
 (72)
embryo 18-20hr
 (171)
embryo 20-22hr
 (530)
embryo 22-24hr
 (441)
larva L1
 (459)
larva L2
 (384)
larva L3 12hr old
 (378)
larva L3 puffstage 1-2
 (65)
larva L3 puffstage 3-6
 (35)
larva L3 puffstage 7-9
 
 24
white prepupae new
 
 23
white prepupae 12hr
 (66)
white prepupae 24hr
 (47)
pupae 2d postWPP
 (40)
pupae 3d postWPP
 (34)
pupae 4d postWPP
 (221)
adult male 01day
 (296)
adult male 05day
 (154)
adult male 30day
 (140)
adult female 01day
 (247)
adult female 05day
 (72)
adult female 30day
 (73)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 74
embryo 02-04hr
 
 91
embryo 04-06hr
 
 52
embryo 06-08hr
 
 27
embryo 08-10hr
 
 41
embryo 10-12hr
 
 97
embryo 12-14hr
 
 68
embryo 14-16hr
 104
embryo 16-18hr
 
 72
embryo 18-20hr
 (171)
embryo 20-22hr
 (530)
embryo 22-24hr
 (441)
larva L1
 (459)
larva L2
 (384)
larva L3 12hr old
 (378)
larva L3 puffstage 1-2
 
 65
larva L3 puffstage 3-6
 
 35
larva L3 puffstage 7-9
 
 24
white prepupae new
 
 23
white prepupae 12hr
 
 66
white prepupae 24hr
 
 47
pupae 2d postWPP
 
 40
pupae 3d postWPP
 
 34
pupae 4d postWPP
 (221)
adult male 01day
 (296)
adult male 05day
 (154)
adult male 30day
 (140)
adult female 01day
 (247)
adult female 05day
 
 72
adult female 30day
 
 73
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 74
embryo 02-04hr
 
 91
embryo 04-06hr
 
 52
embryo 06-08hr
 
 27
embryo 08-10hr
 
 41
embryo 10-12hr
 
 97
embryo 12-14hr
 
 68
embryo 14-16hr
 
 104
embryo 16-18hr
 
 72
embryo 18-20hr
 
 171
embryo 20-22hr
 
 530
embryo 22-24hr
 
 441
larva L1
 
 459
larva L2
 
 384
larva L3 12hr old
 
 378
larva L3 puffstage 1-2
 
 65
larva L3 puffstage 3-6
 
 35
larva L3 puffstage 7-9
 
 24
white prepupae new
 
 23
white prepupae 12hr
 
 66
white prepupae 24hr
 
 47
pupae 2d postWPP
 
 40
pupae 3d postWPP
 
 34
pupae 4d postWPP
 
 221
adult male 01day
 
 296
adult male 05day
 
 154
adult male 30day
 
 140
adult female 01day
 
 247
adult female 05day
 
 72
adult female 30day
 
 73
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 74
embryo 02-04hr
 
 91
embryo 04-06hr
 
 52
embryo 06-08hr
 
 27
embryo 08-10hr
 
 41
embryo 10-12hr
 
 97
embryo 12-14hr
 
 68
embryo 14-16hr
 
 104
embryo 16-18hr
 
 72
embryo 18-20hr
 
 171
embryo 20-22hr
 
 530
embryo 22-24hr
 
 441
larva L1
 
 459
larva L2
 
 384
larva L3 12hr old
 
 378
larva L3 puffstage 1-2
 
 65
larva L3 puffstage 3-6
 
 35
larva L3 puffstage 7-9
 
 24
white prepupae new
 
 23
white prepupae 12hr
 
 66
white prepupae 24hr
 
 47
pupae 2d postWPP
 
 40
pupae 3d postWPP
 
 34
pupae 4d postWPP
 
 221
adult male 01day
 
 296
adult male 05day
 
 154
adult male 30day
 
 140
adult female 01day
 
 247
adult female 05day
 
 72
adult female 30day
 
 73
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (74)
embryo 02-04hr
 (91)
embryo 04-06hr
 (52)
embryo 06-08hr
 27
embryo 08-10hr
 (41)
embryo 10-12hr
 (97)
embryo 12-14hr
 (68)
embryo 14-16hr
 (104)
embryo 16-18hr
 (72)
embryo 18-20hr
 (171)
embryo 20-22hr
 (530)
embryo 22-24hr
 (441)
larva L1
 (459)
larva L2
 (384)
larva L3 12hr old
 (378)
larva L3 puffstage 1-2
 (65)
larva L3 puffstage 3-6
 (35)
larva L3 puffstage 7-9
 
 24
white prepupae new
 
 23
white prepupae 12hr
 (66)
white prepupae 24hr
 (47)
pupae 2d postWPP
 (40)
pupae 3d postWPP
 (34)
pupae 4d postWPP
 (221)
adult male 01day
 (296)
adult male 05day
 (154)
adult male 30day
 (140)
adult female 01day
 (247)
adult female 05day
 (72)
adult female 30day
 (73)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 74
embryo 02-04hr
 
 91
embryo 04-06hr
 
 52
embryo 06-08hr
 
 27
embryo 08-10hr
 
 41
embryo 10-12hr
 
 97
embryo 12-14hr
 
 68
embryo 14-16hr
 104
embryo 16-18hr
 
 72
embryo 18-20hr
 (171)
embryo 20-22hr
 (530)
embryo 22-24hr
 (441)
larva L1
 (459)
larva L2
 (384)
larva L3 12hr old
 (378)
larva L3 puffstage 1-2
 
 65
larva L3 puffstage 3-6
 
 35
larva L3 puffstage 7-9
 
 24
white prepupae new
 
 23
white prepupae 12hr
 
 66
white prepupae 24hr
 
 47
pupae 2d postWPP
 
 40
pupae 3d postWPP
 
 34
pupae 4d postWPP
 (221)
adult male 01day
 (296)
adult male 05day
 (154)
adult male 30day
 140
adult female 01day
 (247)
adult female 05day
 
 72
adult female 30day
 
 73
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 74
embryo 02-04hr
 
 91
embryo 04-06hr
 
 52
embryo 06-08hr
 
 27
embryo 08-10hr
 
 41
embryo 10-12hr
 
 97
embryo 12-14hr
 
 68
embryo 14-16hr
 
 104
embryo 16-18hr
 
 72
embryo 18-20hr
 
 171
embryo 20-22hr
 
 530
embryo 22-24hr
 
 441
larva L1
 
 459
larva L2
 
 384
larva L3 12hr old
 
 378
larva L3 puffstage 1-2
 
 65
larva L3 puffstage 3-6
 
 35
larva L3 puffstage 7-9
 
 24
white prepupae new
 
 23
white prepupae 12hr
 
 66
white prepupae 24hr
 
 47
pupae 2d postWPP
 
 40
pupae 3d postWPP
 
 34
pupae 4d postWPP
 
 221
adult male 01day
 
 296
adult male 05day
 
 154
adult male 30day
 
 140
adult female 01day
 
 247
adult female 05day
 
 72
adult female 30day
 
 73
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 59
Schneider line 2 Sg4
 
 82
embryonic 1182-4H
 
 103
embryonic GM2
 
 184
embryonic Kc167
 
 130
embryonic S1
 
 83
embryonic S3
 
 50
leg disc CME L1
 
 92
wing disc CME-W2
 
 97
wing disc ML-DmD8
 
 50
wing disc ML-DmD9
 
 142
wing disc ML-DmD16-c3
 
 83
wing disc ML-DmD21
 
 128
wing disc ML-DmD32
 
 60
haltere disc ML-DmD17-c3
 
 49
eye-antennal disc ML-DmD11
 
 167
antennal disc ML-DmD20-c5
 
 125
mixed discs ML-DmD4-c1
 
 141
CNS ML-DmBG1-c1
 
 57
CNS ML-DmBG2-c2
 
 55
tumorous blood cells mbn2
 
 60
ovary fGS/OSS
 
 152
ovary OSC
 
 17
ovary OSS
 
 19
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (59)
Schneider line 2 Sg4
 (82)
embryonic 1182-4H
 (103)
embryonic GM2
 (184)
embryonic Kc167
 (130)
embryonic S1
 (83)
embryonic S3
 (50)
leg disc CME L1
 (92)
wing disc CME-W2
 (97)
wing disc ML-DmD8
 (50)
wing disc ML-DmD9
 (142)
wing disc ML-DmD16-c3
 (83)
wing disc ML-DmD21
 (128)
wing disc ML-DmD32
 (60)
haltere disc ML-DmD17-c3
 (49)
eye-antennal disc ML-DmD11
 (167)
antennal disc ML-DmD20-c5
 (125)
mixed discs ML-DmD4-c1
 (141)
CNS ML-DmBG1-c1
 (57)
CNS ML-DmBG2-c2
 (55)
tumorous blood cells mbn2
 (60)
ovary fGS/OSS
 (152)
ovary OSC
 
 17
ovary OSS
 
 19
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 59
Schneider line 2 Sg4
 
 82
embryonic 1182-4H
 103
embryonic GM2
 (184)
embryonic Kc167
 (130)
embryonic S1
 
 83
embryonic S3
 
 50
leg disc CME L1
 
 92
wing disc CME-W2
 
 97
wing disc ML-DmD8
 
 50
wing disc ML-DmD9
 (142)
wing disc ML-DmD16-c3
 
 83
wing disc ML-DmD21
 (128)
wing disc ML-DmD32
 
 60
haltere disc ML-DmD17-c3
 
 49
eye-antennal disc ML-DmD11
 (167)
antennal disc ML-DmD20-c5
 (125)
mixed discs ML-DmD4-c1
 (141)
CNS ML-DmBG1-c1
 
 57
CNS ML-DmBG2-c2
 
 55
tumorous blood cells mbn2
 
 60
ovary fGS/OSS
 (152)
ovary OSC
 
 17
ovary OSS
 
 19
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 59
Schneider line 2 Sg4
 
 82
embryonic 1182-4H
 
 103
embryonic GM2
 
 184
embryonic Kc167
 
 130
embryonic S1
 
 83
embryonic S3
 
 50
leg disc CME L1
 
 92
wing disc CME-W2
 
 97
wing disc ML-DmD8
 
 50
wing disc ML-DmD9
 
 142
wing disc ML-DmD16-c3
 
 83
wing disc ML-DmD21
 
 128
wing disc ML-DmD32
 
 60
haltere disc ML-DmD17-c3
 
 49
eye-antennal disc ML-DmD11
 
 167
antennal disc ML-DmD20-c5
 
 125
mixed discs ML-DmD4-c1
 
 141
CNS ML-DmBG1-c1
 
 57
CNS ML-DmBG2-c2
 
 55
tumorous blood cells mbn2
 
 60
ovary fGS/OSS
 
 152
ovary OSC
 
 17
ovary OSS
 
 19
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 59
Schneider line 2 Sg4
 
 82
embryonic 1182-4H
 
 103
embryonic GM2
 
 184
embryonic Kc167
 
 130
embryonic S1
 
 83
embryonic S3
 
 50
leg disc CME L1
 
 92
wing disc CME-W2
 
 97
wing disc ML-DmD8
 
 50
wing disc ML-DmD9
 
 142
wing disc ML-DmD16-c3
 
 83
wing disc ML-DmD21
 
 128
wing disc ML-DmD32
 
 60
haltere disc ML-DmD17-c3
 
 49
eye-antennal disc ML-DmD11
 
 167
antennal disc ML-DmD20-c5
 
 125
mixed discs ML-DmD4-c1
 
 141
CNS ML-DmBG1-c1
 
 57
CNS ML-DmBG2-c2
 
 55
tumorous blood cells mbn2
 
 60
ovary fGS/OSS
 
 152
ovary OSC
 
 17
ovary OSS
 
 19
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (59)
Schneider line 2 Sg4
 (82)
embryonic 1182-4H
 (103)
embryonic GM2
 (184)
embryonic Kc167
 (130)
embryonic S1
 (83)
embryonic S3
 (50)
leg disc CME L1
 (92)
wing disc CME-W2
 (97)
wing disc ML-DmD8
 (50)
wing disc ML-DmD9
 (142)
wing disc ML-DmD16-c3
 (83)
wing disc ML-DmD21
 (128)
wing disc ML-DmD32
 (60)
haltere disc ML-DmD17-c3
 (49)
eye-antennal disc ML-DmD11
 (167)
antennal disc ML-DmD20-c5
 (125)
mixed discs ML-DmD4-c1
 (141)
CNS ML-DmBG1-c1
 (57)
CNS ML-DmBG2-c2
 (55)
tumorous blood cells mbn2
 (60)
ovary fGS/OSS
 (152)
ovary OSC
 
 17
ovary OSS
 
 19
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 59
Schneider line 2 Sg4
 
 82
embryonic 1182-4H
 103
embryonic GM2
 (184)
embryonic Kc167
 130
embryonic S1
 
 83
embryonic S3
 
 50
leg disc CME L1
 
 92
wing disc CME-W2
 
 97
wing disc ML-DmD8
 
 50
wing disc ML-DmD9
 142
wing disc ML-DmD16-c3
 
 83
wing disc ML-DmD21
 128
wing disc ML-DmD32
 
 60
haltere disc ML-DmD17-c3
 
 49
eye-antennal disc ML-DmD11
 (167)
antennal disc ML-DmD20-c5
 125
mixed discs ML-DmD4-c1
 141
CNS ML-DmBG1-c1
 
 57
CNS ML-DmBG2-c2
 
 55
tumorous blood cells mbn2
 
 60
ovary fGS/OSS
 (152)
ovary OSC
 
 17
ovary OSS
 
 19
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 59
Schneider line 2 Sg4
 
 82
embryonic 1182-4H
 
 103
embryonic GM2
 
 184
embryonic Kc167
 
 130
embryonic S1
 
 83
embryonic S3
 
 50
leg disc CME L1
 
 92
wing disc CME-W2
 
 97
wing disc ML-DmD8
 
 50
wing disc ML-DmD9
 
 142
wing disc ML-DmD16-c3
 
 83
wing disc ML-DmD21
 
 128
wing disc ML-DmD32
 
 60
haltere disc ML-DmD17-c3
 
 49
eye-antennal disc ML-DmD11
 
 167
antennal disc ML-DmD20-c5
 
 125
mixed discs ML-DmD4-c1
 
 141
CNS ML-DmBG1-c1
 
 57
CNS ML-DmBG2-c2
 
 55
tumorous blood cells mbn2
 
 60
ovary fGS/OSS
 
 152
ovary OSC
 
 17
ovary OSS
 
 19
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 26
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 
 56
Cadmium 50 mM 6 hrs, larvae L3
 
 63
Cadmium 50 mM 12 hrs, larvae L3
 
 32
Cadmium 50 mM 48 hrs, 4-day adult
 
 67
Cadmium 100 mM 48 hrs, 4-day adult
 
 38
Copper 0.5 mM 12 hrs, larvae L3
 
 30
Copper 15 mM 48 hrs, 4-day adult
 
 8
Zinc 5 mM 12 hrs, larvae L3
 
 23
Zinc 4.5 mM 48 hrs, 4-day adult
 
 12
Ethanol 2.5% 3 hrs, larvae L3
 
 38
Ethanol 5% 3 hrs, larvae L3
 
 95
Ethanol 10% 3 hrs, larvae L3
 
 93
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 107
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 50
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 18
Paraquat 5 mM 48 hrs, 4-day adult
 
 31
Paraquat 10 mM 48 hrs, 4-day adult
 
 101
Rotenone 2 μg 12 hrs, larvae L3
 
 100
Rotenone 8 μg 12 hrs, larvae L3
 
 124
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 26
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 (56)
Cadmium 50 mM 6 hrs, larvae L3
 (63)
Cadmium 50 mM 12 hrs, larvae L3
 (32)
Cadmium 50 mM 48 hrs, 4-day adult
 (67)
Cadmium 100 mM 48 hrs, 4-day adult
 (38)
Copper 0.5 mM 12 hrs, larvae L3
 (30)
Copper 15 mM 48 hrs, 4-day adult
 
 8
Zinc 5 mM 12 hrs, larvae L3
 
 23
Zinc 4.5 mM 48 hrs, 4-day adult
 
 12
Ethanol 2.5% 3 hrs, larvae L3
 (38)
Ethanol 5% 3 hrs, larvae L3
 (95)
Ethanol 10% 3 hrs, larvae L3
 (93)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (107)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (50)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 18
Paraquat 5 mM 48 hrs, 4-day adult
 (31)
Paraquat 10 mM 48 hrs, 4-day adult
 (101)
Rotenone 2 μg 12 hrs, larvae L3
 (100)
Rotenone 8 μg 12 hrs, larvae L3
 (124)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 26
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 
 56
Cadmium 50 mM 6 hrs, larvae L3
 
 63
Cadmium 50 mM 12 hrs, larvae L3
 
 32
Cadmium 50 mM 48 hrs, 4-day adult
 
 67
Cadmium 100 mM 48 hrs, 4-day adult
 
 38
Copper 0.5 mM 12 hrs, larvae L3
 
 30
Copper 15 mM 48 hrs, 4-day adult
 
 8
Zinc 5 mM 12 hrs, larvae L3
 
 23
Zinc 4.5 mM 48 hrs, 4-day adult
 
 12
Ethanol 2.5% 3 hrs, larvae L3
 
 38
Ethanol 5% 3 hrs, larvae L3
 
 95
Ethanol 10% 3 hrs, larvae L3
 
 93
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 107
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 50
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 18
Paraquat 5 mM 48 hrs, 4-day adult
 
 31
Paraquat 10 mM 48 hrs, 4-day adult
 101
Rotenone 2 μg 12 hrs, larvae L3
 
 100
Rotenone 8 μg 12 hrs, larvae L3
 (124)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 26
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 
 56
Cadmium 50 mM 6 hrs, larvae L3
 
 63
Cadmium 50 mM 12 hrs, larvae L3
 
 32
Cadmium 50 mM 48 hrs, 4-day adult
 
 67
Cadmium 100 mM 48 hrs, 4-day adult
 
 38
Copper 0.5 mM 12 hrs, larvae L3
 
 30
Copper 15 mM 48 hrs, 4-day adult
 
 8
Zinc 5 mM 12 hrs, larvae L3
 
 23
Zinc 4.5 mM 48 hrs, 4-day adult
 
 12
Ethanol 2.5% 3 hrs, larvae L3
 
 38
Ethanol 5% 3 hrs, larvae L3
 
 95
Ethanol 10% 3 hrs, larvae L3
 
 93
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 107
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 50
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 18
Paraquat 5 mM 48 hrs, 4-day adult
 
 31
Paraquat 10 mM 48 hrs, 4-day adult
 
 101
Rotenone 2 μg 12 hrs, larvae L3
 
 100
Rotenone 8 μg 12 hrs, larvae L3
 
 124
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 26
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 
 56
Cadmium 50 mM 6 hrs, larvae L3
 
 63
Cadmium 50 mM 12 hrs, larvae L3
 
 32
Cadmium 50 mM 48 hrs, 4-day adult
 
 67
Cadmium 100 mM 48 hrs, 4-day adult
 
 38
Copper 0.5 mM 12 hrs, larvae L3
 
 30
Copper 15 mM 48 hrs, 4-day adult
 
 8
Zinc 5 mM 12 hrs, larvae L3
 
 23
Zinc 4.5 mM 48 hrs, 4-day adult
 
 12
Ethanol 2.5% 3 hrs, larvae L3
 
 38
Ethanol 5% 3 hrs, larvae L3
 
 95
Ethanol 10% 3 hrs, larvae L3
 
 93
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 107
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 50
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 18
Paraquat 5 mM 48 hrs, 4-day adult
 
 31
Paraquat 10 mM 48 hrs, 4-day adult
 
 101
Rotenone 2 μg 12 hrs, larvae L3
 
 100
Rotenone 8 μg 12 hrs, larvae L3
 
 124
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 26
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 (56)
Cadmium 50 mM 6 hrs, larvae L3
 (63)
Cadmium 50 mM 12 hrs, larvae L3
 32
Cadmium 50 mM 48 hrs, 4-day adult
 (67)
Cadmium 100 mM 48 hrs, 4-day adult
 (38)
Copper 0.5 mM 12 hrs, larvae L3
 30
Copper 15 mM 48 hrs, 4-day adult
 
 8
Zinc 5 mM 12 hrs, larvae L3
 
 23
Zinc 4.5 mM 48 hrs, 4-day adult
 
 12
Ethanol 2.5% 3 hrs, larvae L3
 (38)
Ethanol 5% 3 hrs, larvae L3
 (95)
Ethanol 10% 3 hrs, larvae L3
 (93)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (107)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (50)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 18
Paraquat 5 mM 48 hrs, 4-day adult
 31
Paraquat 10 mM 48 hrs, 4-day adult
 (101)
Rotenone 2 μg 12 hrs, larvae L3
 (100)
Rotenone 8 μg 12 hrs, larvae L3
 (124)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 26
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 
 56
Cadmium 50 mM 6 hrs, larvae L3
 
 63
Cadmium 50 mM 12 hrs, larvae L3
 
 32
Cadmium 50 mM 48 hrs, 4-day adult
 
 67
Cadmium 100 mM 48 hrs, 4-day adult
 
 38
Copper 0.5 mM 12 hrs, larvae L3
 
 30
Copper 15 mM 48 hrs, 4-day adult
 
 8
Zinc 5 mM 12 hrs, larvae L3
 
 23
Zinc 4.5 mM 48 hrs, 4-day adult
 
 12
Ethanol 2.5% 3 hrs, larvae L3
 
 38
Ethanol 5% 3 hrs, larvae L3
 
 95
Ethanol 10% 3 hrs, larvae L3
 
 93
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 107
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 50
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 18
Paraquat 5 mM 48 hrs, 4-day adult
 
 31
Paraquat 10 mM 48 hrs, 4-day adult
 101
Rotenone 2 μg 12 hrs, larvae L3
 
 100
Rotenone 8 μg 12 hrs, larvae L3
 124
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 26
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 
 56
Cadmium 50 mM 6 hrs, larvae L3
 
 63
Cadmium 50 mM 12 hrs, larvae L3
 
 32
Cadmium 50 mM 48 hrs, 4-day adult
 
 67
Cadmium 100 mM 48 hrs, 4-day adult
 
 38
Copper 0.5 mM 12 hrs, larvae L3
 
 30
Copper 15 mM 48 hrs, 4-day adult
 
 8
Zinc 5 mM 12 hrs, larvae L3
 
 23
Zinc 4.5 mM 48 hrs, 4-day adult
 
 12
Ethanol 2.5% 3 hrs, larvae L3
 
 38
Ethanol 5% 3 hrs, larvae L3
 
 95
Ethanol 10% 3 hrs, larvae L3
 
 93
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 107
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 50
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 18
Paraquat 5 mM 48 hrs, 4-day adult
 
 31
Paraquat 10 mM 48 hrs, 4-day adult
 
 101
Rotenone 2 μg 12 hrs, larvae L3
 
 100
Rotenone 8 μg 12 hrs, larvae L3
 
 124
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 6 )
For All Classical Alleles Show

Allele of CG3609ClassMutagenStocksKnown lesion
CG3609e022993 --
CG3609e021842 --
CG3609e010591 --
CG3609e010611 --
CG3609e026580 --
CG3609e041410 --
hide Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show

Allele of CG3609ClassMutagenStocksKnown lesion
CG3609GD104891 Yes
CG3609KK1080121 Yes
hide Aneuploid Aberrations
Disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
UAS construct
Insertions
Type of insertions
Name
Expression data
hide Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
hide Terms Based on Experimental Evidence ( 0 terms )
hide Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term
References
Biological Process
CV term
References
Cellular Component ( 0 terms)
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
protein-protein
Interacting group
Assay
References
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
CG3609 allele
Gene
References
hide External Data
Linkouts
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
hide Orthologs
hide OrthoDB Orthologs (52) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
hideOrthologs in Drosophila Species (EOG6R7VWX)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila simulans
 
Y
 
Drosophila sechellia
 
Y
 
Drosophila erecta
 
Y
 
Drosophila yakuba
 
Y
 
Drosophila ananassae
 
Y
 
Drosophila pseudoobscura pseudoobscura
 
Y
 
Drosophila persimilis
 
Y
 
Drosophila willistoni
 
Y
 
Drosophila virilis
 
Y
 
Drosophila mojavensis
 
Y
 
Drosophila grimshawi
 
Y
 
Drosophila grimshawi
 
 
 
hideOrthologs in non-Drosophila Dipterans (EOG6RV317)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Aedes aegypti
Yellow fever mosquito 
Y
Aedes aegypti
Yellow fever mosquito 
Y
Anopheles gambiae
Malaria mosquito 
Y
Anopheles gambiae
Malaria mosquito 
Y
Culex quinquefasciatus
Southern house mosquito 
Y
Culex quinquefasciatus
Southern house mosquito 
Y
hideOrthologs in non-Dipteran Insects (EOG637Q9M)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Apis mellifera
Western honey bee 
Amel\LOC412231
Y
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG012231
Y
Acromyrmex echinatior
Panamanian leafcutter ant 
Aech\AECH12891
Y
Atta cephalotes
Leafcutter ant 
Acep\ACEP21953
Y
Camponotus floridanus
Florida carpenter ant 
Cflo\CFLO16710
Y
Camponotus floridanus
Florida carpenter ant 
Cflo\CFLO16709
Y
Harpegnathos saltator
Jerdons jumping ant 
Hsal\HSAL18879
Y
Linepithema humile
Argentine ant 
Lhum\LH16968
Y
Pogonomyrmex barbatus
Red harvester ant 
Pbar\PB12894
Y
Solenopsis invicta
Red fire ant 
Sinv\SINV16827
Y
Acyrthosiphon pisum
Pea aphid 
Y
Acyrthosiphon pisum
Pea aphid 
Y
Acyrthosiphon pisum
Pea aphid 
Y
Acyrthosiphon pisum
Pea aphid 
Y
Acyrthosiphon pisum
Pea aphid 
Y
Bombyx mori
Silkmoth 
Y
Bombyx mori
Silkmoth 
Y
Tribolium castaneum
Red flour beetle 
Y
Tribolium castaneum
Red flour beetle 
Y
Tribolium castaneum
Red flour beetle 
Y
hideOrthologs in non-Insect Arthropods (EOG62NGG0)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Ixodes scapularis
Deer tick 
Y
hideOrthologs in non-Arthropod Metazoa (EOG6MPWJ1)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Xenopus tropicalis
Western clawed frog 
Y
Xenopus tropicalis
Western clawed frog 
Y
Mus musculus
House mouse 
Y
Rattus norvegicus
Norway rat 
Y
Homo sapiens
Human 
Y
hide Human Orthologs (1)
Gene
OMIM
HGNC
 
 
hideAAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila simulans
Drosophila sechellia
Drosophila erecta
Drosophila yakuba
Drosophila ananassae
Drosophila pseudoobscura pseudoobscura
Drosophila persimilis
Drosophila willistoni
Drosophila virilis
Drosophila mojavensis
Drosophila grimshawi
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 9 )
Bloomington
Harvard
Kyoto
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 32 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
hide Other Information
hide Discoverer
hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
hide Other Comments
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
modMine - Data generated by the modENCODE project.
hide Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym
Name Synonym
Secondary FlyBase IDs
hide References ( 20 )
Research paper
Antosh et al., 2011, Aging 3(6): 576--583
New comparative genomics approach reveals a conserved health span signature across species. [FBrf0216594]
Mosallanejad et al., 2010, J. Insect Physiol. 56(12): 1973--1985
Ecdysone signaling and transcript signature in Drosophila cells resistant against methoxyfenozide. [FBrf0212166]
Mahr and Aberle, 2006, Gene Expr. Patterns 6(3): 299--309
The expression pattern of the Drosophila vesicular glutamate transporter: a marker protein for motoneurons and glutamatergic centers in the brain. [FBrf0190508]
McGraw et al., 2004, Curr. Biol. 14(16): 1509--1514
Genes regulated by mating, sperm, or seminal proteins in mated female Drosophila melanogaster. [FBrf0180059]
Ceriani et al., 2002, J. Neurosci. 22(21): 9305--9319
Genome-wide expression analysis in Drosophila reveals genes controlling circadian behavior. [FBrf0152147]
Supplementary material
Cammarato et al., 2011, PLoS ONE 6(4):
Table S1. Proteins & Peptides. [FBrf0214682]
Graveley et al., 2011, Nature 471(7339):
Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980]
The modENCODE Consortium, 2010, Science 330(6012):
DataS14: Gene co-expression clusters. [FBrf0213979]
Personal communication to FlyBase
Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center
RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510]
Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project
DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center
RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file)
Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340]
Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase.
Exelixis insertion alleles that are not in FlyBase. [FBrf0179797]
FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.
Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
Ryder, 2004.4.26, Exelixis CG deletion data.
Exelixis CG deletion data. [FBrf0184335]
Gene Disruption Project members, 2001-, (Computer file)
(Computer file) [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file)
Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis
FlyBase, 1992-, FlyBase curation.
FlyBase curation. [FBrf0105495]
Curated genome annotation
FamiliarityBreedsContempt, 1999.11, [Automatic annotations performed at the Celera Jamboreee.]
[Automatic annotations performed at the Celera Jamboreee.] [FBrf0126705]