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Gene Dmel\CG31689

General Information
Symbol	Dmel\CG31689	Species	D. melanogaster
Name		Annotation symbol	CG31689
Feature type	protein_coding_gene	FlyBase ID	FBgn0031449
Gene Model Status	Current	Stock availability	7 publicly available
Also Known As	CG9892
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	23A3-23A3	Sequence location	2L:2,725,674..2,739,830 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG31689 (FBgn0031449). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: ATPase activity, coupled to transmembrane movement of substances; transporter activity. The biological processes in which it is involved are not known. 8 alleles are reported. No phenotypic data is available. It has 8 annotated transcripts and 8 annotated polypeptides. Protein features are: AAA+ ATPase domain; ABC transporter, G1-like; ABC transporter, conserved site; ABC transporter-like; ABC-2 type transporter. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult head, adult heart, adult fat body, adult spermathecae, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult thoracico-abdominal ganglion, adult crop, adult midgut, adult hindgut, adult ovary, adult male accessory gland, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1639286_s_at completely aligns to an exonic region common to each of the 4 FlyBase-annotated transcript isoforms of CG31689. Gene sequence location is 2L:2725674..2739830.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 23A3-23A3   Limits computationally determined from genome sequence between P{PZ}dpp10638 and P{EP}EP832
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG31689 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47 Low-frequency RNA-Seq exon junction(s) not annotated. Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG31689-RA FBtr0077707  NM_164493   2710   615 CG31689-RB FBtr0077708  NM_164494   2401   615 CG31689-RC FBtr0077705  NM_134859   2613   615 CG31689-RD FBtr0077706  NM_164495   2754   615 CG31689-RE FBtr0334158  NM_001273022   2704   615 CG31689-RF FBtr0334159  NM_001273023   2476   615 CG31689-RG FBtr0334160  NM_001273024   2530   615 CG31689-RH FBtr0334161  NM_001273025   2261   624
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG31689-PA   FBpp0077391   69.1   615   8.18     NP_722827   AAF51223 CG31689-PB   FBpp0077392   69.1   615   8.18     NP_722828   AAN10409 CG31689-PC   FBpp0077389   69.1   615   8.18     NP_608703   AAN10410 CG31689-PD   FBpp0077390   69.1   615   8.18     NP_722829   AAN10411 CG31689-PE   FBpp0306275   69.1   615   8.18     NP_001259951   AGB92488 CG31689-PF   FBpp0306276   69.1   615   8.18     NP_001259952   AGB92489 CG31689-PG   FBpp0306277   69.1   615   8.18     NP_001259953   AGB92490 CG31689-PH   FBpp0306278   70.2   624   7.94     NP_001259954   AGB92491
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • ABC transporter-like (IPR003439) AAA+ ATPase domain (IPR003593) ABC-2 type transporter (IPR013525) P-loop containing nucleoside triphosphate hydrolase (IPR027417) ABC transporter, conserved site (IPR017871) ABC transporter, G1-like (IPR020064)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014134 AAF51223   AE014134 AAN10409   AE014134 AAN10410   AE014134 AAN10411   AE014134 AGB92488   AE014134 AGB92489   AE014134 AGB92490   AE014134 AGB92491   AI543719   AW944647   AY069863 AAL40008   BF501863   BH614925   BI165586   BI167682   BI232323   BI232962   BI481795   BI485321   BI563698   BI587140   BT044199   CO264121   CO290994   CO307644   CO311612   CO323429   CO325672   CO328078   CO328975   CZ466550   CZ466551   CZ485327   EC063497   EC064881   EC066117   EC068987   EC206027   EC211964   EC219282   EC232845   EC256600   ES688631   ES688722   ES689512   ES693281   EV574877   EV575085   EV579574   EV592476   EV592672   EV598521   EV599670   GH942036   GH950628   GH961953   GH962067   GH964291   GH966877   GH967496   GH968866   GH975280   GH979757   GH981292   GH984292
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VQF1 Q8T998
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 11 -- 12   hindgut proper primordium   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic hindgut   (Fisher et al., 2012) embryonic proventriculus   (Fisher et al., 2012) embryonic small intestine   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult head, adult heart, adult fat body, adult spermathecae, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult thoracico-abdominal ganglion, adult crop, adult midgut, adult hindgut, adult ovary, adult male accessory gland, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    14.825 Larval Midgut    50.3 Larval Hindgut    84.5 Larval Malpighian Tubules    33.6 Larval Fat Body    54.8 Larval Salivary Gland    12.6 Larval Trachea    68.275 Larval Carcass    165.55 Adult Head    568.8 Adult Eye    422.25 Adult Brain    73.6 Adult Thoracic-Abdominal Ganglion    112.6 Adult Crop    275.3 Adult Midgut    197.1 Adult Hindgut    333.5 Adult Malpighian Tubules    68.6 Adult Fat Body    710.2 Adult Salivary Gland    59.8 Adult Heart    1109.925 Adult VirginFemale Spermatheca    667.3 Adult InseminatedFemale Spermatheca    515.1 Adult Ovary    300.2 Adult Testis    71.7 Adult Male Accessory Gland    191.5 Adult Carcass    851.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    14.825 Larval Midgut    50.3 Larval Hindgut    84.5 Larval Malpighian Tubules    33.6 Larval Fat Body    54.8 Larval Salivary Gland    12.6 Larval Trachea    68.275 Larval Carcass    165.55 Adult Head  (568.8) Adult Eye    422.25 Adult Brain    73.6 Adult Thoracic-Abdominal Ganglion    112.6 Adult Crop    275.3 Adult Midgut    197.1 Adult Hindgut    333.5 Adult Malpighian Tubules    68.6 Adult Fat Body  (710.2) Adult Salivary Gland    59.8 Adult Heart  (1109.925) Adult VirginFemale Spermatheca  (667.3) Adult InseminatedFemale Spermatheca  515.1 Adult Ovary    300.2 Adult Testis    71.7 Adult Male Accessory Gland    191.5 Adult Carcass  (851.8) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    14.825 Larval Midgut    50.3 Larval Hindgut    84.5 Larval Malpighian Tubules    33.6 Larval Fat Body    54.8 Larval Salivary Gland    12.6 Larval Trachea    68.275 Larval Carcass    165.55 Adult Head    568.8 Adult Eye    422.25 Adult Brain    73.6 Adult Thoracic-Abdominal Ganglion    112.6 Adult Crop    275.3 Adult Midgut    197.1 Adult Hindgut    333.5 Adult Malpighian Tubules    68.6 Adult Fat Body    710.2 Adult Salivary Gland    59.8 Adult Heart  (1109.925) Adult VirginFemale Spermatheca    667.3 Adult InseminatedFemale Spermatheca    515.1 Adult Ovary    300.2 Adult Testis    71.7 Adult Male Accessory Gland    191.5 Adult Carcass    851.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    14.825 Larval Midgut    50.3 Larval Hindgut    84.5 Larval Malpighian Tubules    33.6 Larval Fat Body    54.8 Larval Salivary Gland    12.6 Larval Trachea    68.275 Larval Carcass    165.55 Adult Head    568.8 Adult Eye    422.25 Adult Brain    73.6 Adult Thoracic-Abdominal Ganglion    112.6 Adult Crop    275.3 Adult Midgut    197.1 Adult Hindgut    333.5 Adult Malpighian Tubules    68.6 Adult Fat Body    710.2 Adult Salivary Gland    59.8 Adult Heart    1109.925 Adult VirginFemale Spermatheca    667.3 Adult InseminatedFemale Spermatheca    515.1 Adult Ovary    300.2 Adult Testis    71.7 Adult Male Accessory Gland    191.5 Adult Carcass    851.8 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    14.825 Larval Midgut    50.3 Larval Hindgut    84.5 Larval Malpighian Tubules    33.6 Larval Fat Body    54.8 Larval Salivary Gland    12.6 Larval Trachea    68.275 Larval Carcass    165.55 Adult Head    568.8 Adult Eye    422.25 Adult Brain    73.6 Adult Thoracic-Abdominal Ganglion    112.6 Adult Crop    275.3 Adult Midgut    197.1 Adult Hindgut    333.5 Adult Malpighian Tubules    68.6 Adult Fat Body    710.2 Adult Salivary Gland    59.8 Adult Heart    1109.925 Adult VirginFemale Spermatheca    667.3 Adult InseminatedFemale Spermatheca    515.1 Adult Ovary    300.2 Adult Testis    71.7 Adult Male Accessory Gland    191.5 Adult Carcass    851.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    14.825 Larval Midgut    50.3 Larval Hindgut    84.5 Larval Malpighian Tubules    33.6 Larval Fat Body    54.8 Larval Salivary Gland    12.6 Larval Trachea    68.275 Larval Carcass    165.55 Adult Head  568.8 Adult Eye    422.25 Adult Brain    73.6 Adult Thoracic-Abdominal Ganglion    112.6 Adult Crop    275.3 Adult Midgut    197.1 Adult Hindgut    333.5 Adult Malpighian Tubules    68.6 Adult Fat Body  710.2 Adult Salivary Gland    59.8 Adult Heart  (1109.925) Adult VirginFemale Spermatheca  667.3 Adult InseminatedFemale Spermatheca  515.1 Adult Ovary    300.2 Adult Testis    71.7 Adult Male Accessory Gland    191.5 Adult Carcass  (851.8) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    14.825 Larval Midgut    50.3 Larval Hindgut    84.5 Larval Malpighian Tubules    33.6 Larval Fat Body    54.8 Larval Salivary Gland    12.6 Larval Trachea    68.275 Larval Carcass    165.55 Adult Head    568.8 Adult Eye    422.25 Adult Brain    73.6 Adult Thoracic-Abdominal Ganglion    112.6 Adult Crop    275.3 Adult Midgut    197.1 Adult Hindgut    333.5 Adult Malpighian Tubules    68.6 Adult Fat Body    710.2 Adult Salivary Gland    59.8 Adult Heart  1109.925 Adult VirginFemale Spermatheca    667.3 Adult InseminatedFemale Spermatheca    515.1 Adult Ovary    300.2 Adult Testis    71.7 Adult Male Accessory Gland    191.5 Adult Carcass    851.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    14.825 Larval Midgut    50.3 Larval Hindgut    84.5 Larval Malpighian Tubules    33.6 Larval Fat Body    54.8 Larval Salivary Gland    12.6 Larval Trachea    68.275 Larval Carcass    165.55 Adult Head    568.8 Adult Eye    422.25 Adult Brain    73.6 Adult Thoracic-Abdominal Ganglion    112.6 Adult Crop    275.3 Adult Midgut    197.1 Adult Hindgut    333.5 Adult Malpighian Tubules    68.6 Adult Fat Body    710.2 Adult Salivary Gland    59.8 Adult Heart    1109.925 Adult VirginFemale Spermatheca    667.3 Adult InseminatedFemale Spermatheca    515.1 Adult Ovary    300.2 Adult Testis    71.7 Adult Male Accessory Gland    191.5 Adult Carcass    851.8 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    568.8   NA  Eye    422.25   NA  Brain    73.6   14.825  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    112.6   NA  Crop    275.3   50.3  Midgut    197.1   84.5  Hindgut    333.5   33.6  Malpighian Tubules    68.6   54.8  Fat Body    710.2   no informative data  Salivary Gland    59.8   NA  Heart    1109.925   68.275  Trachea    NA   NA  VirginFemale Spermatheca    667.3   NA  InseminatedFemale Spermatheca    515.1   NA  Ovary    300.2   NA  Testis    71.7   NA  Male Accessory Gland    191.5   165.55  Carcass    851.8 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female    41 head, mated 1-day female    14 head, mated 4-day female    20 head, mated 20-day female    29 head, mated 1-day male    27 head, mated 4-day male    46 head, mated 20-day male    69 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    9 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    1 carcass, larvae L3 wandering    10 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    22 ovary, virgin 4-day female    36 ovary, mated 4-day female    27 testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female  (41) head, mated 1-day female    14 head, mated 4-day female    20 head, mated 20-day female  (29) head, mated 1-day male  (27) head, mated 4-day male  (46) head, mated 20-day male  (69) salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    9 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    1 carcass, larvae L3 wandering    10 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    22 ovary, virgin 4-day female  (36) ovary, mated 4-day female  (27) testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female    41 head, mated 1-day female    14 head, mated 4-day female    20 head, mated 20-day female    29 head, mated 1-day male    27 head, mated 4-day male    46 head, mated 20-day male    69 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    9 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    1 carcass, larvae L3 wandering    10 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    22 ovary, virgin 4-day female    36 ovary, mated 4-day female    27 testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female    41 head, mated 1-day female    14 head, mated 4-day female    20 head, mated 20-day female    29 head, mated 1-day male    27 head, mated 4-day male    46 head, mated 20-day male    69 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    9 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    1 carcass, larvae L3 wandering    10 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    22 ovary, virgin 4-day female    36 ovary, mated 4-day female    27 testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female    41 head, mated 1-day female    14 head, mated 4-day female    20 head, mated 20-day female    29 head, mated 1-day male    27 head, mated 4-day male    46 head, mated 20-day male    69 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    9 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    1 carcass, larvae L3 wandering    10 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    22 ovary, virgin 4-day female    36 ovary, mated 4-day female    27 testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female  (41) head, mated 1-day female    14 head, mated 4-day female    20 head, mated 20-day female  29 head, mated 1-day male  27 head, mated 4-day male  (46) head, mated 20-day male  (69) salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    9 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    1 carcass, larvae L3 wandering    10 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    22 ovary, virgin 4-day female  (36) ovary, mated 4-day female  27 testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female    41 head, mated 1-day female    14 head, mated 4-day female    20 head, mated 20-day female    29 head, mated 1-day male    27 head, mated 4-day male    46 head, mated 20-day male    69 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    9 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    1 carcass, larvae L3 wandering    10 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    22 ovary, virgin 4-day female    36 ovary, mated 4-day female    27 testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female    41 head, mated 1-day female    14 head, mated 4-day female    20 head, mated 20-day female    29 head, mated 1-day male    27 head, mated 4-day male    46 head, mated 20-day male    69 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    4 digestive system, 4-day adult    7 digestive system, 20-day adult    9 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    1 carcass, larvae L3 wandering    10 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    22 ovary, virgin 4-day female    36 ovary, mated 4-day female    27 testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    46 embryo 02-04hr    4 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    5 embryo 12-14hr    8 embryo 14-16hr    12 embryo 16-18hr    28 embryo 18-20hr    49 embryo 20-22hr    22 embryo 22-24hr    27 larva L1    15 larva L2    17 larva L3 12hr old    20 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    15 white prepupae new    7 white prepupae 12hr    35 white prepupae 24hr    19 pupae 2d postWPP    8 pupae 3d postWPP    10 pupae 4d postWPP    43 adult male 01day    26 adult male 05day    33 adult male 30day    36 adult female 01day    30 adult female 05day    43 adult female 30day    41 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (46) embryo 02-04hr    4 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    5 embryo 12-14hr    8 embryo 14-16hr    12 embryo 16-18hr  (28) embryo 18-20hr  (49) embryo 20-22hr    22 embryo 22-24hr  (27) larva L1    15 larva L2    17 larva L3 12hr old    20 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    15 white prepupae new    7 white prepupae 12hr  (35) white prepupae 24hr    19 pupae 2d postWPP    8 pupae 3d postWPP    10 pupae 4d postWPP  (43) adult male 01day  26 adult male 05day  (33) adult male 30day  (36) adult female 01day  (30) adult female 05day  (43) adult female 30day  (41) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    46 embryo 02-04hr    4 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    5 embryo 12-14hr    8 embryo 14-16hr    12 embryo 16-18hr    28 embryo 18-20hr    49 embryo 20-22hr    22 embryo 22-24hr    27 larva L1    15 larva L2    17 larva L3 12hr old    20 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    15 white prepupae new    7 white prepupae 12hr    35 white prepupae 24hr    19 pupae 2d postWPP    8 pupae 3d postWPP    10 pupae 4d postWPP    43 adult male 01day    26 adult male 05day    33 adult male 30day    36 adult female 01day    30 adult female 05day    43 adult female 30day    41 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    46 embryo 02-04hr    4 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    5 embryo 12-14hr    8 embryo 14-16hr    12 embryo 16-18hr    28 embryo 18-20hr    49 embryo 20-22hr    22 embryo 22-24hr    27 larva L1    15 larva L2    17 larva L3 12hr old    20 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    15 white prepupae new    7 white prepupae 12hr    35 white prepupae 24hr    19 pupae 2d postWPP    8 pupae 3d postWPP    10 pupae 4d postWPP    43 adult male 01day    26 adult male 05day    33 adult male 30day    36 adult female 01day    30 adult female 05day    43 adult female 30day    41 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    46 embryo 02-04hr    4 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    5 embryo 12-14hr    8 embryo 14-16hr    12 embryo 16-18hr    28 embryo 18-20hr    49 embryo 20-22hr    22 embryo 22-24hr    27 larva L1    15 larva L2    17 larva L3 12hr old    20 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    15 white prepupae new    7 white prepupae 12hr    35 white prepupae 24hr    19 pupae 2d postWPP    8 pupae 3d postWPP    10 pupae 4d postWPP    43 adult male 01day    26 adult male 05day    33 adult male 30day    36 adult female 01day    30 adult female 05day    43 adult female 30day    41 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (46) embryo 02-04hr    4 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    5 embryo 12-14hr    8 embryo 14-16hr    12 embryo 16-18hr  28 embryo 18-20hr  (49) embryo 20-22hr    22 embryo 22-24hr  27 larva L1    15 larva L2    17 larva L3 12hr old    20 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    15 white prepupae new    7 white prepupae 12hr  (35) white prepupae 24hr    19 pupae 2d postWPP    8 pupae 3d postWPP    10 pupae 4d postWPP  (43) adult male 01day  26 adult male 05day  (33) adult male 30day  (36) adult female 01day  30 adult female 05day  (43) adult female 30day  (41) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    46 embryo 02-04hr    4 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    5 embryo 12-14hr    8 embryo 14-16hr    12 embryo 16-18hr    28 embryo 18-20hr    49 embryo 20-22hr    22 embryo 22-24hr    27 larva L1    15 larva L2    17 larva L3 12hr old    20 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    15 white prepupae new    7 white prepupae 12hr    35 white prepupae 24hr    19 pupae 2d postWPP    8 pupae 3d postWPP    10 pupae 4d postWPP    43 adult male 01day    26 adult male 05day    33 adult male 30day    36 adult female 01day    30 adult female 05day    43 adult female 30day    41 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    46 embryo 02-04hr    4 embryo 04-06hr    1 embryo 06-08hr    1 embryo 08-10hr    3 embryo 10-12hr    5 embryo 12-14hr    8 embryo 14-16hr    12 embryo 16-18hr    28 embryo 18-20hr    49 embryo 20-22hr    22 embryo 22-24hr    27 larva L1    15 larva L2    17 larva L3 12hr old    20 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    15 white prepupae new    7 white prepupae 12hr    35 white prepupae 24hr    19 pupae 2d postWPP    8 pupae 3d postWPP    10 pupae 4d postWPP    43 adult male 01day    26 adult male 05day    33 adult male 30day    36 adult female 01day    30 adult female 05day    43 adult female 30day    41 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    1 embryonic 1182-4H    8 embryonic GM2    13 embryonic Kc167    9 embryonic S1    3 embryonic S3    2 leg disc CME L1    2 wing disc CME-W2    7 wing disc ML-DmD8    0 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    30 ovary fGS/OSS    1 ovary OSC    3 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    1 embryonic 1182-4H    8 embryonic GM2    13 embryonic Kc167    9 embryonic S1    3 embryonic S3    2 leg disc CME L1    2 wing disc CME-W2    7 wing disc ML-DmD8    0 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2  (30) ovary fGS/OSS    1 ovary OSC    3 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    1 embryonic 1182-4H    8 embryonic GM2    13 embryonic Kc167    9 embryonic S1    3 embryonic S3    2 leg disc CME L1    2 wing disc CME-W2    7 wing disc ML-DmD8    0 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    30 ovary fGS/OSS    1 ovary OSC    3 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    1 embryonic 1182-4H    8 embryonic GM2    13 embryonic Kc167    9 embryonic S1    3 embryonic S3    2 leg disc CME L1    2 wing disc CME-W2    7 wing disc ML-DmD8    0 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    30 ovary fGS/OSS    1 ovary OSC    3 ovary OSS    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    1 embryonic 1182-4H    8 embryonic GM2    13 embryonic Kc167    9 embryonic S1    3 embryonic S3    2 leg disc CME L1    2 wing disc CME-W2    7 wing disc ML-DmD8    0 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    30 ovary fGS/OSS    1 ovary OSC    3 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    1 embryonic 1182-4H    8 embryonic GM2    13 embryonic Kc167    9 embryonic S1    3 embryonic S3    2 leg disc CME L1    2 wing disc CME-W2    7 wing disc ML-DmD8    0 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2  30 ovary fGS/OSS    1 ovary OSC    3 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    1 embryonic 1182-4H    8 embryonic GM2    13 embryonic Kc167    9 embryonic S1    3 embryonic S3    2 leg disc CME L1    2 wing disc CME-W2    7 wing disc ML-DmD8    0 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    30 ovary fGS/OSS    1 ovary OSC    3 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    14 Schneider line 2 Sg4    1 embryonic 1182-4H    8 embryonic GM2    13 embryonic Kc167    9 embryonic S1    3 embryonic S3    2 leg disc CME L1    2 wing disc CME-W2    7 wing disc ML-DmD8    0 wing disc ML-DmD9    9 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    0 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    22 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    30 ovary fGS/OSS    1 ovary OSC    3 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    27 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3  (30) Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult  (27) Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    27 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    27 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    27 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3  30 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult  27 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    27 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    11 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    27 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_10
External Data & Images
Linkouts	BDGP expression data • SD10603 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031449 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31689-RC FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG31689 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG31689CB03239 viable, with Scer\GAL4pnr-MD237 CG31689GD839 Phenotype manifest in Allele
Classical Alleles ( 5 )
For All Classical Alleles Show
Allele of CG31689 Class Mutagen Stocks Known lesion CG31689c00554 piggyBac transposase 1 -- CG31689DG12405 P-element activity 1 -- CG31689f02778 piggyBac transposase 1 -- CG31689KG00713 P-element activity 1 -- CG31689CB03239 P-element activity 0 Yes
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG31689 Class Mutagen Stocks Known lesion CG31689GD839 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG31689KK110720 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG31689NIG.31689R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel6008 (Ryder, 2004.4.26) Df(2L)Exel6277 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD839} NA P{KK110720} NA P{NIG.31689R} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{PTT-GB}CG31689CB03239 NA P{SUPor-P}CG31689KG00713 NA P{wHy}CG31689DG12405 NA PBac{PB}CG31689c00554 NA PBac{WH}CG31689f02778 NA
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term Evidence References
ATPase activity, coupled to transmembrane movement of substances inferred from sequence or structural similarity with UniProtKB:P45844 (FlyBase, 1992-) ATP binding inferred from electronic annotation with InterPro:IPR003439, InterPro:IPR017871, InterPro:IPR020064 (FlyBase Curators et al., 2004-) transporter activity inferred from sequence or structural similarity with UniProtKB:P45844 (FlyBase, 1992-)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
ATP-binding cassette (ABC) transporter complex inferred from sequence or structural similarity with UniProtKB:P45844 (FlyBase, 1992-) integral to membrane inferred from electronic annotation with InterPro:IPR020064 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG31689 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0031449 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 326154
Orthologs
OrthoDB Orthologs (62) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6ZGPXT Dipteran inclusive ortholog search EOG6X3H8H Insect inclusive ortholog search EOG612K1M Arthropod inclusive ortholog search EOG6T4B9H Metazoa inclusive ortholog search EOG6HTNKB
Orthologs in Drosophila Species (EOG6ZGPXT)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG31689     Drosophila simulans   Dsim\GD23174 Y   Drosophila sechellia   Dsec\GM18358 Y   Drosophila erecta   Dere\GG24877 Y   Drosophila yakuba   Dyak\GE18174 Y   Drosophila ananassae   Dana\GF13887 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA16397 Y   Drosophila persimilis   Dper\GL26576 Y   Drosophila willistoni   Dwil\GK24575 Y   Drosophila virilis   Dvir\GJ17376 Y   Drosophila mojavensis   Dmoj\GI17876 Y   Drosophila grimshawi   Dgri\GH11164 Y
Orthologs in non-Drosophila Dipterans (EOG6X3H8H)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL015670   Aedes aegypti Yellow fever mosquito  Aaeg\AAEL013372   Anopheles gambiae Malaria mosquito  Agam\AGAP008889   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ801608
Orthologs in non-Dipteran Insects (EOG612K1M)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC410552   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG015102   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH15782   Atta cephalotes Leafcutter ant  Acep\ACEP22352   Camponotus floridanus Florida carpenter ant  Cflo\CFLO11983   Camponotus floridanus Florida carpenter ant  Cflo\CFLO12118   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL10700   Linepithema humile Argentine ant  Lhum\LH17100   Pogonomyrmex barbatus Red harvester ant  Pbar\PB17210   Solenopsis invicta Red fire ant  Sinv\SINV13070   Acyrthosiphon pisum Pea aphid  Apim\ACYPI001846   Pediculus humanus Human body louse  Phum\PHUM349840   Tribolium castaneum Red flour beetle  Tcas\GLEAN_07074
Orthologs in non-Insect Arthropods (EOG6T4B9H)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_312949 Y Daphnia pulex Water flea  Dpux\psaA Y Daphnia pulex Water flea  Dpux\JGI_V11_312950 Y Daphnia pulex Water flea  Dpux\JGI_V11_320906 Y Daphnia pulex Water flea  Dpux\JGI_V11_312951 Y Daphnia pulex Water flea  Dpux\COI Y Daphnia pulex Water flea  Dpux\JGI_V11_347444 Y Daphnia pulex Water flea  Dpux\JGI_V11_312948 Y Daphnia pulex Water flea  Dpux\JGI_V11_312942 Y Daphnia pulex Water flea  Dpux\Lage3 Y Daphnia pulex Water flea  Dpux\JGI_V11_222011 Y Ixodes scapularis Deer tick  Isca\ISCW004600 Y Ixodes scapularis Deer tick  Isca\ISCW009243 Y Ixodes scapularis Deer tick  Isca\ISCW009244 Y Ixodes scapularis Deer tick  Isca\ISCW006658 Y Ixodes scapularis Deer tick  Isca\ISCW007580 Y
Orthologs in non-Arthropod Metazoa (EOG6HTNKB)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\wht-5 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_013105gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_021184gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_004670gn Y Danio rerio Zebrafish  Drer\abcg4b Y Danio rerio Zebrafish  Drer\abcg1 Y Danio rerio Zebrafish  Drer\abcg4a Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000021581 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000033068 Y Gallus gallus Domestic chicken  Ggal\ABCG1 Y Gallus gallus Domestic chicken  Ggal\ABCG4 Y Mus musculus House mouse  Mmus\Abcg4 Y Mus musculus House mouse  Mmus\Abcg1 Y Rattus norvegicus Norway rat  Rnor\Abcg1 Y Rattus norvegicus Norway rat  Rnor\Abcg4 Y Homo sapiens Human  Hsap\ABCG4 Y Homo sapiens Human  Hsap\ENSG00000160179 Y
Human Orthologs (2)
Gene OMIM HGNC Hsap\ABCG4     Hsap\ENSG00000160179
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD23174 Drosophila sechellia Dsec\GM18358 Drosophila erecta Dere\GG24877 Drosophila yakuba Dyak\GE18174 Drosophila ananassae Dana\GF13887 Drosophila pseudoobscura pseudoobscura Dpse\GA16397 Drosophila persimilis Dper\GL26576 Drosophila willistoni Dwil\GK24575 Drosophila virilis Dvir\GJ17376 Drosophila mojavensis Dmoj\GI17876 Drosophila grimshawi Dgri\GH11164
Stocks & Reagents
Stocks Listed in FlyBase ( 7 )
Bloomington	20596 y1 w67c23; P{wHy}CG31689DG12405 13143 y1 w67c23; P{SUPor-P}CG31689KG00713
Harvard	- PBac{PB}CG31689c00554 - PBac{WH}CG31689f02778
VDRC	v102097 P{KK110720}VIE-260B v2584 w1118; P{GD839}v2584/CyO v2585 w1118; P{GD839}v2585/CyO
Genomic Clones ( 2 )
	BACR30P05 BACR42J13 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 44 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	SD10603
Other clones	FI05237
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT17436 RE05512 RE08118 RE28371 RE29221 RE64396 RE68629 RH27616 RH34377
Other clones	28840 70150 102398 214571.22 CK01.29B.H5 CK01.97D.C4 Dmel_dig_005991_0609_1439 Dmel_dig_008486_0593_1119 Dmel_dig_018277_0583_2992 Dmel_neb_009260_0610_3615 Dmel_neb_012285_0881_2094 Dmel_neb_012463_0664_1888 Dmel_neb_014382_0907_2075 EK075742 EK137534 EK190443 EK197055 EK225551 EK255144 EK291761 EP08533 RP004171548 RP004199161 RP004233200 RP004246270 RP004260434 RP004346575 RP004448888 RP004466996 RP004474265 RP004505826 RP004528504 RP004529940
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0031449 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 326154
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG9892 CG31689 (FlyBase, 1996-)
Additional comments	"CG9892" may correspond to "Scim13". Sequence analysis off ends of P{SUPor-P} in Scim insertion mutant places "Scim13" near/in "CG9892". (Dobie and Karpen, 2001.4.18) Source for merge of CG9892 CG31689 was a shared cDNA (date:030728). (FlyBase, 1996-)
Other Comments
	Annotation CG9892 renamed CG31689 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_134859 NM_164493 NM_164494 NM_164495 NM_001273022 NM_001273023 NM_001273024 NM_001273025 RefSeq (Proteins) • NP_608703 NP_722827 NP_722828 NP_722829 NP_001259951 NP_001259952 NP_001259953 NP_001259954 DDBJ / EMBL / GenBank • AAF51223 AAL40008 AAN10409 AAN10410 AAN10411 AGB92488 AGB92489 AGB92490 AGB92491 AI543719 AW944647 AY069863 BH614925 CZ466550 CZ466551 CZ485327 Entrez Gene - A searchable database of RefSeq genes. • 326154 UniProtKB/TrEMBL • Q8T998 Q9VQF1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • ABC transporter-like (IPR003439) AAA+ ATPase domain (IPR003593) ABC-2 type transporter (IPR013525) P-loop containing nucleoside triphosphate hydrolase (IPR027417) ABC transporter, conserved site (IPR017871) ABC transporter, G1-like (IPR020064) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • SD10603
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0031449 DRSC - Results from RNAi screens. • FBgn0031449 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031449 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31689-RC FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0031449 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 326154 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 326154 modMine - Data generated by the modENCODE project. • FBgn0031449
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	CG9892 (Pedra et al., 2004, Dobie and Karpen, 2001.4.18, Dean et al., 2001, ) CG31689 (Buszczak et al., 2007, Keleman et al., 2009.8.5, Bushati et al., 2008, Ellis and Carney, 2010, Bronstein et al., 2010, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
	FBgn0051689
References ( 25 )
Generate a list of	All references relating to this gene ( 25 )
List References by type	Research paper  ( 5 ) Supplementary material  ( 2 ) Review  ( 1 ) Personal communication to FlyBase  ( 10 ) FlyBase analysis  ( 3 ) Stock list  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...