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Gene Dmel\CG9662

General Information
Symbol	Dmel\CG9662	Species	D. melanogaster
Name		Annotation symbol	CG9662
Feature type	protein_coding_gene	FlyBase ID	FBgn0031529
Gene Model Status	Current	Stock availability	4 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	23F1-23F1	Sequence location	2L:3,375,832..3,376,737 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG9662 (FBgn0031529). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Oligosaccharyl transferase complex, subunit OST3/OST6. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval/adult salivary gland, adult female reproductive system, adult male reproductive system. Comments on Affy2 ProbeSet: ProbeSet 1638645_at partially aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG9662: 13 out of 14 probes fall into this exonic region. Gene sequence location is 2L:3375832..3376737.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 23F1-23F1   Limits computationally determined from genome sequence between P{lacW}Madk00237 and P{lacW}Pdswk10101
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG9662 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.45
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG9662-RA FBtr0077594  NM_134928   795   149 CG9662-RB FBtr0332407  NM_001273068   846   149
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG9662-PA   FBpp0077282   16.8   149   9.41     NP_608772   AAF51116 CG9662-PB   FBpp0304680   16.8   149   9.41     NP_001259997   AGB92533
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Oligosaccharyl transferase complex, subunit OST3/OST6 (IPR021149)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014134 AAF51116   AE014134 AGB92533   AY070777 AAL48399   AY431501   BE979017   BF491045   BF494854   BT125066   CO154216   CO269374   CO279279   CO293395   CO300998   CO320161   CO323562   CO327181   DQ440479   EC061281   EC062515   EC071167   EC086592   EC204366   EC235100   EC238952   EC250485   EC251209   EC255365   EC264624   EV597429   GH945348   GH960155
UniProtKB/Swiss-Prot	Q9VQP9
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval/adult salivary gland, adult female reproductive system, adult male reproductive system. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    177.775 Larval Midgut    42.8 Larval Hindgut    66.5 Larval Malpighian Tubules    30.3 Larval Fat Body    98.8 Larval Salivary Gland    244 Larval Trachea    96.625 Larval Carcass    83.775 Adult Head    62.2 Adult Eye    55.6 Adult Brain    98.2 Adult Thoracic-Abdominal Ganglion    96.6 Adult Crop    84.1 Adult Midgut    33.8 Adult Hindgut    59.6 Adult Malpighian Tubules    16 Adult Fat Body    51.4 Adult Salivary Gland    123.6 Adult Heart    43.425 Adult VirginFemale Spermatheca    109 Adult InseminatedFemale Spermatheca    130.6 Adult Ovary    123.9 Adult Testis    124.5 Adult Male Accessory Gland    174.1 Adult Carcass    51.3 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    177.775 Larval Midgut    42.8 Larval Hindgut    66.5 Larval Malpighian Tubules    30.3 Larval Fat Body    98.8 Larval Salivary Gland    244 Larval Trachea    96.625 Larval Carcass    83.775 Adult Head    62.2 Adult Eye    55.6 Adult Brain    98.2 Adult Thoracic-Abdominal Ganglion    96.6 Adult Crop    84.1 Adult Midgut    33.8 Adult Hindgut    59.6 Adult Malpighian Tubules    16 Adult Fat Body    51.4 Adult Salivary Gland    123.6 Adult Heart    43.425 Adult VirginFemale Spermatheca    109 Adult InseminatedFemale Spermatheca    130.6 Adult Ovary    123.9 Adult Testis    124.5 Adult Male Accessory Gland    174.1 Adult Carcass    51.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    177.775 Larval Midgut    42.8 Larval Hindgut    66.5 Larval Malpighian Tubules    30.3 Larval Fat Body    98.8 Larval Salivary Gland    244 Larval Trachea    96.625 Larval Carcass    83.775 Adult Head    62.2 Adult Eye    55.6 Adult Brain    98.2 Adult Thoracic-Abdominal Ganglion    96.6 Adult Crop    84.1 Adult Midgut    33.8 Adult Hindgut    59.6 Adult Malpighian Tubules    16 Adult Fat Body    51.4 Adult Salivary Gland    123.6 Adult Heart    43.425 Adult VirginFemale Spermatheca    109 Adult InseminatedFemale Spermatheca    130.6 Adult Ovary    123.9 Adult Testis    124.5 Adult Male Accessory Gland    174.1 Adult Carcass    51.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    177.775 Larval Midgut    42.8 Larval Hindgut    66.5 Larval Malpighian Tubules    30.3 Larval Fat Body    98.8 Larval Salivary Gland    244 Larval Trachea    96.625 Larval Carcass    83.775 Adult Head    62.2 Adult Eye    55.6 Adult Brain    98.2 Adult Thoracic-Abdominal Ganglion    96.6 Adult Crop    84.1 Adult Midgut    33.8 Adult Hindgut    59.6 Adult Malpighian Tubules    16 Adult Fat Body    51.4 Adult Salivary Gland    123.6 Adult Heart    43.425 Adult VirginFemale Spermatheca    109 Adult InseminatedFemale Spermatheca    130.6 Adult Ovary    123.9 Adult Testis    124.5 Adult Male Accessory Gland    174.1 Adult Carcass    51.3 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    177.775 Larval Midgut    42.8 Larval Hindgut    66.5 Larval Malpighian Tubules    30.3 Larval Fat Body    98.8 Larval Salivary Gland    244 Larval Trachea    96.625 Larval Carcass    83.775 Adult Head    62.2 Adult Eye    55.6 Adult Brain    98.2 Adult Thoracic-Abdominal Ganglion    96.6 Adult Crop    84.1 Adult Midgut    33.8 Adult Hindgut    59.6 Adult Malpighian Tubules    16 Adult Fat Body    51.4 Adult Salivary Gland    123.6 Adult Heart    43.425 Adult VirginFemale Spermatheca    109 Adult InseminatedFemale Spermatheca    130.6 Adult Ovary    123.9 Adult Testis    124.5 Adult Male Accessory Gland    174.1 Adult Carcass    51.3 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    177.775 Larval Midgut    42.8 Larval Hindgut    66.5 Larval Malpighian Tubules    30.3 Larval Fat Body    98.8 Larval Salivary Gland    244 Larval Trachea    96.625 Larval Carcass    83.775 Adult Head    62.2 Adult Eye    55.6 Adult Brain    98.2 Adult Thoracic-Abdominal Ganglion    96.6 Adult Crop    84.1 Adult Midgut    33.8 Adult Hindgut    59.6 Adult Malpighian Tubules    16 Adult Fat Body    51.4 Adult Salivary Gland    123.6 Adult Heart    43.425 Adult VirginFemale Spermatheca    109 Adult InseminatedFemale Spermatheca    130.6 Adult Ovary    123.9 Adult Testis    124.5 Adult Male Accessory Gland    174.1 Adult Carcass    51.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    177.775 Larval Midgut    42.8 Larval Hindgut    66.5 Larval Malpighian Tubules    30.3 Larval Fat Body    98.8 Larval Salivary Gland    244 Larval Trachea    96.625 Larval Carcass    83.775 Adult Head    62.2 Adult Eye    55.6 Adult Brain    98.2 Adult Thoracic-Abdominal Ganglion    96.6 Adult Crop    84.1 Adult Midgut    33.8 Adult Hindgut    59.6 Adult Malpighian Tubules    16 Adult Fat Body    51.4 Adult Salivary Gland    123.6 Adult Heart    43.425 Adult VirginFemale Spermatheca    109 Adult InseminatedFemale Spermatheca    130.6 Adult Ovary    123.9 Adult Testis    124.5 Adult Male Accessory Gland    174.1 Adult Carcass    51.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    177.775 Larval Midgut    42.8 Larval Hindgut    66.5 Larval Malpighian Tubules    30.3 Larval Fat Body    98.8 Larval Salivary Gland    244 Larval Trachea    96.625 Larval Carcass    83.775 Adult Head    62.2 Adult Eye    55.6 Adult Brain    98.2 Adult Thoracic-Abdominal Ganglion    96.6 Adult Crop    84.1 Adult Midgut    33.8 Adult Hindgut    59.6 Adult Malpighian Tubules    16 Adult Fat Body    51.4 Adult Salivary Gland    123.6 Adult Heart    43.425 Adult VirginFemale Spermatheca    109 Adult InseminatedFemale Spermatheca    130.6 Adult Ovary    123.9 Adult Testis    124.5 Adult Male Accessory Gland    174.1 Adult Carcass    51.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    62.2   NA  Eye    55.6   NA  Brain    98.2   177.775  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    96.6   NA  Crop    84.1   no informative data  Midgut    33.8   66.5  Hindgut    59.6   no informative data  Malpighian Tubules    no informative data   98.8  Fat Body    51.4   244  Salivary Gland    123.6   NA  Heart    43.425   96.625  Trachea    NA   NA  VirginFemale Spermatheca    109   NA  InseminatedFemale Spermatheca    130.6   NA  Ovary    123.9   NA  Testis    124.5   NA  Male Accessory Gland    174.1   83.775  Carcass    51.3 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    68 central nervous system, larvae L3    67 central nervous system, pupae P8    42 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    18 head, mated 1-day female    8 head, mated 4-day female    13 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    25 head, mated 20-day male    30 salivary gland, larvae L3 wandering    15 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    6 digestive system, 4-day adult    12 digestive system, 20-day adult    9 fat body, larvae L3 wandering    15 fat body, white prepupae    26 fat body, pupae P8    30 carcass, larvae L3 wandering    49 carcass, 1-day adult    11 carcass, 4-day adult    17 carcass, 20-day adult    14 ovary, virgin 4-day female    74 ovary, mated 4-day female    70 testis, mated 4-day male    48 accessory gland, mated 4-day male    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (68) central nervous system, larvae L3  (67) central nervous system, pupae P8  (42) head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    18 head, mated 1-day female    8 head, mated 4-day female    13 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    25 head, mated 20-day male  (30) salivary gland, larvae L3 wandering    15 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    6 digestive system, 4-day adult    12 digestive system, 20-day adult    9 fat body, larvae L3 wandering    15 fat body, white prepupae  26 fat body, pupae P8  (30) carcass, larvae L3 wandering  (49) carcass, 1-day adult    11 carcass, 4-day adult    17 carcass, 20-day adult    14 ovary, virgin 4-day female  (74) ovary, mated 4-day female  (70) testis, mated 4-day male  (48) accessory gland, mated 4-day male  (32) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    68 central nervous system, larvae L3    67 central nervous system, pupae P8    42 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    18 head, mated 1-day female    8 head, mated 4-day female    13 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    25 head, mated 20-day male    30 salivary gland, larvae L3 wandering    15 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    6 digestive system, 4-day adult    12 digestive system, 20-day adult    9 fat body, larvae L3 wandering    15 fat body, white prepupae    26 fat body, pupae P8    30 carcass, larvae L3 wandering    49 carcass, 1-day adult    11 carcass, 4-day adult    17 carcass, 20-day adult    14 ovary, virgin 4-day female    74 ovary, mated 4-day female    70 testis, mated 4-day male    48 accessory gland, mated 4-day male    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    68 central nervous system, larvae L3    67 central nervous system, pupae P8    42 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    18 head, mated 1-day female    8 head, mated 4-day female    13 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    25 head, mated 20-day male    30 salivary gland, larvae L3 wandering    15 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    6 digestive system, 4-day adult    12 digestive system, 20-day adult    9 fat body, larvae L3 wandering    15 fat body, white prepupae    26 fat body, pupae P8    30 carcass, larvae L3 wandering    49 carcass, 1-day adult    11 carcass, 4-day adult    17 carcass, 20-day adult    14 ovary, virgin 4-day female    74 ovary, mated 4-day female    70 testis, mated 4-day male    48 accessory gland, mated 4-day male    32 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    68 central nervous system, larvae L3    67 central nervous system, pupae P8    42 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    18 head, mated 1-day female    8 head, mated 4-day female    13 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    25 head, mated 20-day male    30 salivary gland, larvae L3 wandering    15 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    6 digestive system, 4-day adult    12 digestive system, 20-day adult    9 fat body, larvae L3 wandering    15 fat body, white prepupae    26 fat body, pupae P8    30 carcass, larvae L3 wandering    49 carcass, 1-day adult    11 carcass, 4-day adult    17 carcass, 20-day adult    14 ovary, virgin 4-day female    74 ovary, mated 4-day female    70 testis, mated 4-day male    48 accessory gland, mated 4-day male    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (68) central nervous system, larvae L3  (67) central nervous system, pupae P8  (42) head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    18 head, mated 1-day female    8 head, mated 4-day female    13 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    25 head, mated 20-day male  30 salivary gland, larvae L3 wandering    15 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    6 digestive system, 4-day adult    12 digestive system, 20-day adult    9 fat body, larvae L3 wandering    15 fat body, white prepupae  26 fat body, pupae P8  30 carcass, larvae L3 wandering  (49) carcass, 1-day adult    11 carcass, 4-day adult    17 carcass, 20-day adult    14 ovary, virgin 4-day female  (74) ovary, mated 4-day female  (70) testis, mated 4-day male  (48) accessory gland, mated 4-day male  32 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    68 central nervous system, larvae L3    67 central nervous system, pupae P8    42 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    18 head, mated 1-day female    8 head, mated 4-day female    13 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    25 head, mated 20-day male    30 salivary gland, larvae L3 wandering    15 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    6 digestive system, 4-day adult    12 digestive system, 20-day adult    9 fat body, larvae L3 wandering    15 fat body, white prepupae    26 fat body, pupae P8    30 carcass, larvae L3 wandering    49 carcass, 1-day adult    11 carcass, 4-day adult    17 carcass, 20-day adult    14 ovary, virgin 4-day female    74 ovary, mated 4-day female    70 testis, mated 4-day male    48 accessory gland, mated 4-day male    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    68 central nervous system, larvae L3    67 central nervous system, pupae P8    42 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    18 head, mated 1-day female    8 head, mated 4-day female    13 head, mated 20-day female    15 head, mated 1-day male    18 head, mated 4-day male    25 head, mated 20-day male    30 salivary gland, larvae L3 wandering    15 salivary gland, white prepupae    10 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    6 digestive system, 4-day adult    12 digestive system, 20-day adult    9 fat body, larvae L3 wandering    15 fat body, white prepupae    26 fat body, pupae P8    30 carcass, larvae L3 wandering    49 carcass, 1-day adult    11 carcass, 4-day adult    17 carcass, 20-day adult    14 ovary, virgin 4-day female    74 ovary, mated 4-day female    70 testis, mated 4-day male    48 accessory gland, mated 4-day male    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    50 embryo 02-04hr    64 embryo 04-06hr    38 embryo 06-08hr    26 embryo 08-10hr    29 embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    9 embryo 18-20hr    4 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    8 larva L2    17 larva L3 12hr old    14 larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9    26 white prepupae new    28 white prepupae 12hr    28 white prepupae 24hr    37 pupae 2d postWPP    24 pupae 3d postWPP    12 pupae 4d postWPP    8 adult male 01day    15 adult male 05day    18 adult male 30day    15 adult female 01day    15 adult female 05day    34 adult female 30day    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (50) embryo 02-04hr  (64) embryo 04-06hr  (38) embryo 06-08hr  26 embryo 08-10hr  (29) embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    9 embryo 18-20hr    4 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    8 larva L2    17 larva L3 12hr old    14 larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9  26 white prepupae new  (28) white prepupae 12hr  (28) white prepupae 24hr  (37) pupae 2d postWPP    24 pupae 3d postWPP    12 pupae 4d postWPP    8 adult male 01day    15 adult male 05day    18 adult male 30day    15 adult female 01day    15 adult female 05day  (34) adult female 30day  (31) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    50 embryo 02-04hr    64 embryo 04-06hr    38 embryo 06-08hr    26 embryo 08-10hr    29 embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    9 embryo 18-20hr    4 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    8 larva L2    17 larva L3 12hr old    14 larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9    26 white prepupae new    28 white prepupae 12hr    28 white prepupae 24hr    37 pupae 2d postWPP    24 pupae 3d postWPP    12 pupae 4d postWPP    8 adult male 01day    15 adult male 05day    18 adult male 30day    15 adult female 01day    15 adult female 05day    34 adult female 30day    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    50 embryo 02-04hr    64 embryo 04-06hr    38 embryo 06-08hr    26 embryo 08-10hr    29 embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    9 embryo 18-20hr    4 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    8 larva L2    17 larva L3 12hr old    14 larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9    26 white prepupae new    28 white prepupae 12hr    28 white prepupae 24hr    37 pupae 2d postWPP    24 pupae 3d postWPP    12 pupae 4d postWPP    8 adult male 01day    15 adult male 05day    18 adult male 30day    15 adult female 01day    15 adult female 05day    34 adult female 30day    31 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    50 embryo 02-04hr    64 embryo 04-06hr    38 embryo 06-08hr    26 embryo 08-10hr    29 embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    9 embryo 18-20hr    4 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    8 larva L2    17 larva L3 12hr old    14 larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9    26 white prepupae new    28 white prepupae 12hr    28 white prepupae 24hr    37 pupae 2d postWPP    24 pupae 3d postWPP    12 pupae 4d postWPP    8 adult male 01day    15 adult male 05day    18 adult male 30day    15 adult female 01day    15 adult female 05day    34 adult female 30day    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (50) embryo 02-04hr  (64) embryo 04-06hr  (38) embryo 06-08hr  26 embryo 08-10hr  29 embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    9 embryo 18-20hr    4 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    8 larva L2    17 larva L3 12hr old    14 larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9  26 white prepupae new  28 white prepupae 12hr  28 white prepupae 24hr  (37) pupae 2d postWPP    24 pupae 3d postWPP    12 pupae 4d postWPP    8 adult male 01day    15 adult male 05day    18 adult male 30day    15 adult female 01day    15 adult female 05day  (34) adult female 30day  31 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    50 embryo 02-04hr    64 embryo 04-06hr    38 embryo 06-08hr    26 embryo 08-10hr    29 embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    9 embryo 18-20hr    4 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    8 larva L2    17 larva L3 12hr old    14 larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9    26 white prepupae new    28 white prepupae 12hr    28 white prepupae 24hr    37 pupae 2d postWPP    24 pupae 3d postWPP    12 pupae 4d postWPP    8 adult male 01day    15 adult male 05day    18 adult male 30day    15 adult female 01day    15 adult female 05day    34 adult female 30day    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    50 embryo 02-04hr    64 embryo 04-06hr    38 embryo 06-08hr    26 embryo 08-10hr    29 embryo 10-12hr    19 embryo 12-14hr    18 embryo 14-16hr    11 embryo 16-18hr    9 embryo 18-20hr    4 embryo 20-22hr    3 embryo 22-24hr    4 larva L1    8 larva L2    17 larva L3 12hr old    14 larva L3 puffstage 1-2    18 larva L3 puffstage 3-6    23 larva L3 puffstage 7-9    26 white prepupae new    28 white prepupae 12hr    28 white prepupae 24hr    37 pupae 2d postWPP    24 pupae 3d postWPP    12 pupae 4d postWPP    8 adult male 01day    15 adult male 05day    18 adult male 30day    15 adult female 01day    15 adult female 05day    34 adult female 30day    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    97 Schneider line 2 Sg4    57 embryonic 1182-4H    21 embryonic GM2    40 embryonic Kc167    98 embryonic S1    93 embryonic S3    134 leg disc CME L1    41 wing disc CME-W2    143 wing disc ML-DmD8    73 wing disc ML-DmD9    63 wing disc ML-DmD16-c3    68 wing disc ML-DmD21    98 wing disc ML-DmD32    72 haltere disc ML-DmD17-c3    111 eye-antennal disc ML-DmD11    95 antennal disc ML-DmD20-c5    93 mixed discs ML-DmD4-c1    24 CNS ML-DmBG1-c1    88 CNS ML-DmBG2-c2    100 tumorous blood cells mbn2    126 ovary fGS/OSS    10 ovary OSC    64 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (97) Schneider line 2 Sg4  (57) embryonic 1182-4H    21 embryonic GM2  (40) embryonic Kc167  (98) embryonic S1  (93) embryonic S3  (134) leg disc CME L1  (41) wing disc CME-W2  (143) wing disc ML-DmD8  (73) wing disc ML-DmD9  (63) wing disc ML-DmD16-c3  (68) wing disc ML-DmD21  (98) wing disc ML-DmD32  (72) haltere disc ML-DmD17-c3  (111) eye-antennal disc ML-DmD11  (95) antennal disc ML-DmD20-c5  (93) mixed discs ML-DmD4-c1    24 CNS ML-DmBG1-c1  (88) CNS ML-DmBG2-c2  (100) tumorous blood cells mbn2  (126) ovary fGS/OSS    10 ovary OSC  (64) ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    97 Schneider line 2 Sg4    57 embryonic 1182-4H    21 embryonic GM2    40 embryonic Kc167    98 embryonic S1    93 embryonic S3  (134) leg disc CME L1    41 wing disc CME-W2  (143) wing disc ML-DmD8    73 wing disc ML-DmD9    63 wing disc ML-DmD16-c3    68 wing disc ML-DmD21    98 wing disc ML-DmD32    72 haltere disc ML-DmD17-c3  (111) eye-antennal disc ML-DmD11    95 antennal disc ML-DmD20-c5    93 mixed discs ML-DmD4-c1    24 CNS ML-DmBG1-c1    88 CNS ML-DmBG2-c2    100 tumorous blood cells mbn2  (126) ovary fGS/OSS    10 ovary OSC    64 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    97 Schneider line 2 Sg4    57 embryonic 1182-4H    21 embryonic GM2    40 embryonic Kc167    98 embryonic S1    93 embryonic S3    134 leg disc CME L1    41 wing disc CME-W2    143 wing disc ML-DmD8    73 wing disc ML-DmD9    63 wing disc ML-DmD16-c3    68 wing disc ML-DmD21    98 wing disc ML-DmD32    72 haltere disc ML-DmD17-c3    111 eye-antennal disc ML-DmD11    95 antennal disc ML-DmD20-c5    93 mixed discs ML-DmD4-c1    24 CNS ML-DmBG1-c1    88 CNS ML-DmBG2-c2    100 tumorous blood cells mbn2    126 ovary fGS/OSS    10 ovary OSC    64 ovary OSS    18 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    97 Schneider line 2 Sg4    57 embryonic 1182-4H    21 embryonic GM2    40 embryonic Kc167    98 embryonic S1    93 embryonic S3    134 leg disc CME L1    41 wing disc CME-W2    143 wing disc ML-DmD8    73 wing disc ML-DmD9    63 wing disc ML-DmD16-c3    68 wing disc ML-DmD21    98 wing disc ML-DmD32    72 haltere disc ML-DmD17-c3    111 eye-antennal disc ML-DmD11    95 antennal disc ML-DmD20-c5    93 mixed discs ML-DmD4-c1    24 CNS ML-DmBG1-c1    88 CNS ML-DmBG2-c2    100 tumorous blood cells mbn2    126 ovary fGS/OSS    10 ovary OSC    64 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (97) Schneider line 2 Sg4  (57) embryonic 1182-4H    21 embryonic GM2  (40) embryonic Kc167  (98) embryonic S1  (93) embryonic S3  (134) leg disc CME L1  (41) wing disc CME-W2  (143) wing disc ML-DmD8  (73) wing disc ML-DmD9  (63) wing disc ML-DmD16-c3  (68) wing disc ML-DmD21  (98) wing disc ML-DmD32  (72) haltere disc ML-DmD17-c3  (111) eye-antennal disc ML-DmD11  (95) antennal disc ML-DmD20-c5  (93) mixed discs ML-DmD4-c1    24 CNS ML-DmBG1-c1  (88) CNS ML-DmBG2-c2  (100) tumorous blood cells mbn2  (126) ovary fGS/OSS    10 ovary OSC  (64) ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    97 Schneider line 2 Sg4    57 embryonic 1182-4H    21 embryonic GM2    40 embryonic Kc167    98 embryonic S1    93 embryonic S3  134 leg disc CME L1    41 wing disc CME-W2  143 wing disc ML-DmD8    73 wing disc ML-DmD9    63 wing disc ML-DmD16-c3    68 wing disc ML-DmD21    98 wing disc ML-DmD32    72 haltere disc ML-DmD17-c3  111 eye-antennal disc ML-DmD11    95 antennal disc ML-DmD20-c5    93 mixed discs ML-DmD4-c1    24 CNS ML-DmBG1-c1    88 CNS ML-DmBG2-c2    100 tumorous blood cells mbn2  126 ovary fGS/OSS    10 ovary OSC    64 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    97 Schneider line 2 Sg4    57 embryonic 1182-4H    21 embryonic GM2    40 embryonic Kc167    98 embryonic S1    93 embryonic S3    134 leg disc CME L1    41 wing disc CME-W2    143 wing disc ML-DmD8    73 wing disc ML-DmD9    63 wing disc ML-DmD16-c3    68 wing disc ML-DmD21    98 wing disc ML-DmD32    72 haltere disc ML-DmD17-c3    111 eye-antennal disc ML-DmD11    95 antennal disc ML-DmD20-c5    93 mixed discs ML-DmD4-c1    24 CNS ML-DmBG1-c1    88 CNS ML-DmBG2-c2    100 tumorous blood cells mbn2    126 ovary fGS/OSS    10 ovary OSC    64 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    9 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    28 Cadmium 50 mM 12 hrs, larvae L3    41 Cadmium 50 mM 48 hrs, 4-day adult    24 Cadmium 100 mM 48 hrs, 4-day adult    47 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    36 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    44 Ethanol 5% 3 hrs, larvae L3    26 Ethanol 10% 3 hrs, larvae L3    21 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    46 Paraquat 10 mM 48 hrs, 4-day adult    30 Rotenone 2 μg 12 hrs, larvae L3    27 Rotenone 8 μg 12 hrs, larvae L3    24 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    9 heat shock, 4-day adult  (29) Cadmium 50 mM 6 hrs, larvae L3  (28) Cadmium 50 mM 12 hrs, larvae L3  (41) Cadmium 50 mM 48 hrs, 4-day adult    24 Cadmium 100 mM 48 hrs, 4-day adult  (47) Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult  (36) Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3  (44) Ethanol 5% 3 hrs, larvae L3  26 Ethanol 10% 3 hrs, larvae L3    21 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (43) Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult  (46) Paraquat 10 mM 48 hrs, 4-day adult  (30) Rotenone 2 μg 12 hrs, larvae L3  (27) Rotenone 8 μg 12 hrs, larvae L3    24 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    9 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    28 Cadmium 50 mM 12 hrs, larvae L3    41 Cadmium 50 mM 48 hrs, 4-day adult    24 Cadmium 100 mM 48 hrs, 4-day adult    47 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    36 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    44 Ethanol 5% 3 hrs, larvae L3    26 Ethanol 10% 3 hrs, larvae L3    21 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    46 Paraquat 10 mM 48 hrs, 4-day adult    30 Rotenone 2 μg 12 hrs, larvae L3    27 Rotenone 8 μg 12 hrs, larvae L3    24 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    9 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    28 Cadmium 50 mM 12 hrs, larvae L3    41 Cadmium 50 mM 48 hrs, 4-day adult    24 Cadmium 100 mM 48 hrs, 4-day adult    47 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    36 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    44 Ethanol 5% 3 hrs, larvae L3    26 Ethanol 10% 3 hrs, larvae L3    21 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    46 Paraquat 10 mM 48 hrs, 4-day adult    30 Rotenone 2 μg 12 hrs, larvae L3    27 Rotenone 8 μg 12 hrs, larvae L3    24 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    9 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    28 Cadmium 50 mM 12 hrs, larvae L3    41 Cadmium 50 mM 48 hrs, 4-day adult    24 Cadmium 100 mM 48 hrs, 4-day adult    47 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    36 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    44 Ethanol 5% 3 hrs, larvae L3    26 Ethanol 10% 3 hrs, larvae L3    21 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    46 Paraquat 10 mM 48 hrs, 4-day adult    30 Rotenone 2 μg 12 hrs, larvae L3    27 Rotenone 8 μg 12 hrs, larvae L3    24 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    9 heat shock, 4-day adult  29 Cadmium 50 mM 6 hrs, larvae L3  28 Cadmium 50 mM 12 hrs, larvae L3  (41) Cadmium 50 mM 48 hrs, 4-day adult    24 Cadmium 100 mM 48 hrs, 4-day adult  (47) Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult  (36) Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3  (44) Ethanol 5% 3 hrs, larvae L3  26 Ethanol 10% 3 hrs, larvae L3    21 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (43) Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult  (46) Paraquat 10 mM 48 hrs, 4-day adult  30 Rotenone 2 μg 12 hrs, larvae L3  27 Rotenone 8 μg 12 hrs, larvae L3    24 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    9 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    28 Cadmium 50 mM 12 hrs, larvae L3    41 Cadmium 50 mM 48 hrs, 4-day adult    24 Cadmium 100 mM 48 hrs, 4-day adult    47 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    36 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    44 Ethanol 5% 3 hrs, larvae L3    26 Ethanol 10% 3 hrs, larvae L3    21 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    46 Paraquat 10 mM 48 hrs, 4-day adult    30 Rotenone 2 μg 12 hrs, larvae L3    27 Rotenone 8 μg 12 hrs, larvae L3    24 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    14 cold shock, 4-day adult    9 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    28 Cadmium 50 mM 12 hrs, larvae L3    41 Cadmium 50 mM 48 hrs, 4-day adult    24 Cadmium 100 mM 48 hrs, 4-day adult    47 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    36 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    19 Ethanol 2.5% 3 hrs, larvae L3    44 Ethanol 5% 3 hrs, larvae L3    26 Ethanol 10% 3 hrs, larvae L3    21 Caffeine 1.5 mg/ml 4 hrs, larvae L3    23 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    46 Paraquat 10 mM 48 hrs, 4-day adult    30 Rotenone 2 μg 12 hrs, larvae L3    27 Rotenone 8 μg 12 hrs, larvae L3    24 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_06 mE1_20_mRNA_expression_cluster_04
External Data & Images
Linkouts	BDGP expression data • AT03617 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031529 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9662-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG9662f06279 viable, with Scer\GAL4pnr-MD237 CG9662GD868 Sterility Allele fertile CG9662f06279 Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG9662 Class Mutagen Stocks Known lesion CG9662f06279 piggyBac transposase 2 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG9662 Class Mutagen Stocks Known lesion CG9662GD868 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG9662KK108543 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel7016 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD868} NA P{KK108543} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{WH}CG9662f06279 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
	There is no information supporting a biological process, cellular component or molecular function term for this gene. (Based on a review of available data on: 2008-02-22)
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG9662 - ATPsyn-Cf6 experimental knowledge based (Guruharsha et al., 2011) CG9662 - CG10934 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9662 - CG13220 experimental knowledge based (Guruharsha et al., 2011) CG9662 - CG2789 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) CG9662 - CG31522 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9662 - CG31523 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9662 - Cand1 experimental knowledge based (Guruharsha et al., 2011) CG9662 - Dh44-R2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9662 - Kr-h2 experimental knowledge based (Guruharsha et al., 2011) CG9662 - Ost48 experimental knowledge based (Guruharsha et al., 2011) CG9662 - Pk17E anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9662 - Rab7 experimental knowledge based (Guruharsha et al., 2011) CG9662 - Ranbp9 experimental knowledge based (Guruharsha et al., 2011) CG9662 - Tsp29Fb anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9662 - bbc experimental knowledge based (Guruharsha et al., 2011) CG9662 - frc anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9662 - jagn experimental knowledge based (Guruharsha et al., 2011) CG9662 - l(1)G0230 experimental knowledge based (Guruharsha et al., 2011) CG9662 - rho anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG9662 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0031529
Orthologs
OrthoDB Orthologs (34) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6JWW13 Dipteran inclusive ortholog search EOG66DMC3 Insect inclusive ortholog search EOG60RZC6 Arthropod inclusive ortholog search EOG6TX98C Metazoa inclusive ortholog search EOG625JNS
Orthologs in Drosophila Species (EOG6JWW13)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG9662     Drosophila simulans   Dsim\GD22760 Y   Drosophila sechellia   Dsec\GM18149 Y   Drosophila erecta   Dere\GG24442 Y   Drosophila yakuba   Dyak\GE14881 Y   Drosophila ananassae   Dana\GF15682 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA25992 Y   Drosophila persimilis   Dper\GL19520 Y   Drosophila willistoni   Dwil\GK14596 Y   Drosophila virilis   Dvir\GJ10350 Y   Drosophila mojavensis   Dmoj\GI15864 Y   Drosophila grimshawi   Dgri\GH10468 Y
Orthologs in non-Drosophila Dipterans (EOG66DMC3)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL002198   Anopheles gambiae Malaria mosquito  Agam\AGAP008475   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ003502
Orthologs in non-Dipteran Insects (EOG60RZC6)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB55938   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG012929   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH21088   Atta cephalotes Leafcutter ant  Acep\ACEP22283   Camponotus floridanus Florida carpenter ant  Cflo\CFLO12893   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL17709   Linepithema humile Argentine ant  Lhum\LH16908   Pogonomyrmex barbatus Red harvester ant  Pbar\PB19104   Acyrthosiphon pisum Pea aphid  Apim\ACYPI005283   Bombyx mori Silkmoth  Bmor\BGIBMGA006115
Orthologs in non-Insect Arthropods (EOG6TX98C)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_231513   Ixodes scapularis Deer tick  Isca\ISCW004923
Orthologs in non-Arthropod Metazoa (EOG625JNS)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_012345gn   Danio rerio Zebrafish  Drer\ENSDARG00000035838   Xenopus tropicalis Western clawed frog  Xtro\ostc   Gallus gallus Domestic chicken  Ggal\ENSGALG00000010526   Mus musculus House mouse  Mmus\Ostc   Rattus norvegicus Norway rat  Rnor\Ostc   Homo sapiens Human  Hsap\OSTC
Human Orthologs (1)
Gene OMIM HGNC Hsap\OSTC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD22760 Drosophila sechellia Dsec\GM18149 Drosophila erecta Dere\GG24442 Drosophila yakuba Dyak\GE14881 Drosophila ananassae Dana\GF15682 Drosophila pseudoobscura pseudoobscura Dpse\GA25992 Drosophila persimilis Dper\GL19520 Drosophila willistoni Dwil\GK14596 Drosophila virilis Dvir\GJ10350 Drosophila mojavensis Dmoj\GI15864 Drosophila grimshawi Dgri\GH10468
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	18957 w1118; PBac{WH}CG9662f06279
Harvard	- PBac{WH}CG9662f06279
VDRC	v100769 P{KK108543}VIE-260B v7278 w1118; P{GD868}v7278
Genomic Clones ( 2 )
	BACR15P13 BACR26A07 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 26 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT03617
Other clones	MIP14365
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT27696
Other clones	20188 54652 63761 72085 172551 174220 177381 214403.74 280777 523265 bs85f08 CK01.123D.B8 Dmel_neb_013919_0839_2801 EK094240 EK133941 EK179854 EK190837 EK202830 EK282554 EN03730 EP06414 RP004231866 RP004548442
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0031529 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33554
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG9662 BcDNA:AT03617 (FlyBase, 1996-)
Additional comments	Source for merge of CG9662 BcDNA:AT03617 was shared cDNA (AT03617) (date:030528). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_134928 NM_001273068 RefSeq (Proteins) • NP_608772 NP_001259997 DDBJ / EMBL / GenBank • AAF51116 AAL48399 AGB92533 AY070777 BF494854 Entrez Gene - A searchable database of RefSeq genes. • 33554 UniProtKB/Swiss-Prot • Q9VQP9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Oligosaccharyl transferase complex, subunit OST3/OST6 (IPR021149) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • AT03617
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0031529 DRSC - Results from RNAi screens. • FBgn0031529 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031529 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9662-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0031529 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33554 modMine - Data generated by the modENCODE project. • FBgn0031529
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	BcDNA:AT03617   CG9662 (Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
	FBgn0047352
References ( 16 )
Research paper	Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] Guruharsha et al., 2011, Cell 147(3): Table S3. [FBrf0218395] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Robertson, 2001.5.6, FlyBase error report on Sun May 06 00:40:30 2001. FlyBase error report on Sun May 06 00:40:30 2001. [FBrf0136023] Robertson, 2001.7.7, Third set of annotation suggestions from bee ESTs. Third set of annotation suggestions from bee ESTs. [FBrf0138600] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]