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Gene Dmel\CG3792

General Information
Symbol	Dmel\CG3792	Species	D. melanogaster
Name		Annotation symbol	CG3792
Feature type	protein_coding_gene	FlyBase ID	FBgn0031662
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	25B5-25B5	Sequence location	2L:4,977,312..4,978,567 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG3792 (FBgn0031662). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. Based on sequence similarity, it is predicted to be involved in the biological process: protein glycosylation. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Cystinosin/ERS1p repeat; Mannose-P-dolichol utilization defect 1 protein. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during early larval stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval midgut. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1632503_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG3792. Gene sequence location is 2L:4977312..4978567.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 25B5-25B5   Limits computationally determined from genome sequence between P{lacW}l(2)k10001k10001 and P{lacW}vkgk16721&P{lacW}Cg25Ck00405
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG3792 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.44
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG3792-RA FBtr0078997  NM_135045   1194   252
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG3792-PA   FBpp0078636   27.5   252   9.68     NP_608889   AAF52190
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Cystinosin/ERS1p repeat (IPR006603) Mannose-P-dolichol utilization defect 1 protein (IPR016817)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA803072   AE014134 AAF52190   AF171765   BF489128   BI232427   BI484943   BT004850 AAO45206   CK604400   CK604401   CO182190   CO291064   CO291588   CO300070   CO335455   CZ472654   EC081970   EC222727   EC246922   EC264064   EV592071   GH749030   GH749464   GH750569   GH752159   GH760900   GH770690   GH772827   GH774419   GH775593   GH777324   GH777340   GH780306   GH783992   GH784080   GH784390   GH786476   GH786579   GH787942   GH788509   GH788929   GH788943   GH789143   GH789988   GH792592   GH795061   GH802229   GH805601   GH805703   GH807459   GH810057   GH811025   GH818515   GH823518   GH824494   GH825084   GH825958   GH826710   GH827213   GH827470   GH831185   GH833402   GH835322   GH837982   GH838663   GH841228   GH841759   GH844846   GH847565   GH849812   GH851806   GH852021   GH852965   GH853255   GH854632   GH855561   GH859404   GH862601   GH862858   GH863793   GH869380   GH870626   GH871046   GH874045   GH877283   GH878569   GH878606   GH882172   GH884522   GH886052   GH890121   GH891041   GH891173   GH894497   GH896249   GH898820   GH900657   GH900999   GH904251   GH906631   GH910007   GH911373   GH912948   GH915107   GH919914   GH923212   GH927097   GH928071   GH930139   GH932523   GH933441
UniProtKB/Swiss-Prot	Q9VMW8
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic brain   (Fisher et al., 2012) embryonic central brain neuron   (Fisher et al., 2012) embryonic hindgut   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval nervous system   (Fisher et al., 2012) gastric caecum   (Fisher et al., 2012) lateral cord neuron   (Fisher et al., 2012) ventral nerve cord   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval midgut. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    338.6 Larval Midgut    715.1 Larval Hindgut    217.3 Larval Malpighian Tubules    211.7 Larval Fat Body    213.1 Larval Salivary Gland    377.3 Larval Trachea    347.925 Larval Carcass    271.3 Adult Head    210.1 Adult Eye    250.7 Adult Brain    275.9 Adult Thoracic-Abdominal Ganglion    342.6 Adult Crop    202.6 Adult Midgut    133.5 Adult Hindgut    217 Adult Malpighian Tubules    435.3 Adult Fat Body    252.4 Adult Salivary Gland    194.1 Adult Heart    311.675 Adult VirginFemale Spermatheca    177.5 Adult InseminatedFemale Spermatheca    218.2 Adult Ovary    231.5 Adult Testis    107.7 Adult Male Accessory Gland    421.2 Adult Carcass    239.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    338.6 Larval Midgut  (715.1) Larval Hindgut    217.3 Larval Malpighian Tubules    211.7 Larval Fat Body    213.1 Larval Salivary Gland    377.3 Larval Trachea    347.925 Larval Carcass    271.3 Adult Head    210.1 Adult Eye    250.7 Adult Brain    275.9 Adult Thoracic-Abdominal Ganglion    342.6 Adult Crop    202.6 Adult Midgut    133.5 Adult Hindgut    217 Adult Malpighian Tubules    435.3 Adult Fat Body    252.4 Adult Salivary Gland    194.1 Adult Heart    311.675 Adult VirginFemale Spermatheca    177.5 Adult InseminatedFemale Spermatheca    218.2 Adult Ovary    231.5 Adult Testis    107.7 Adult Male Accessory Gland    421.2 Adult Carcass    239.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    338.6 Larval Midgut    715.1 Larval Hindgut    217.3 Larval Malpighian Tubules    211.7 Larval Fat Body    213.1 Larval Salivary Gland    377.3 Larval Trachea    347.925 Larval Carcass    271.3 Adult Head    210.1 Adult Eye    250.7 Adult Brain    275.9 Adult Thoracic-Abdominal Ganglion    342.6 Adult Crop    202.6 Adult Midgut    133.5 Adult Hindgut    217 Adult Malpighian Tubules    435.3 Adult Fat Body    252.4 Adult Salivary Gland    194.1 Adult Heart    311.675 Adult VirginFemale Spermatheca    177.5 Adult InseminatedFemale Spermatheca    218.2 Adult Ovary    231.5 Adult Testis    107.7 Adult Male Accessory Gland    421.2 Adult Carcass    239.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    338.6 Larval Midgut    715.1 Larval Hindgut    217.3 Larval Malpighian Tubules    211.7 Larval Fat Body    213.1 Larval Salivary Gland    377.3 Larval Trachea    347.925 Larval Carcass    271.3 Adult Head    210.1 Adult Eye    250.7 Adult Brain    275.9 Adult Thoracic-Abdominal Ganglion    342.6 Adult Crop    202.6 Adult Midgut    133.5 Adult Hindgut    217 Adult Malpighian Tubules    435.3 Adult Fat Body    252.4 Adult Salivary Gland    194.1 Adult Heart    311.675 Adult VirginFemale Spermatheca    177.5 Adult InseminatedFemale Spermatheca    218.2 Adult Ovary    231.5 Adult Testis    107.7 Adult Male Accessory Gland    421.2 Adult Carcass    239.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    338.6 Larval Midgut    715.1 Larval Hindgut    217.3 Larval Malpighian Tubules    211.7 Larval Fat Body    213.1 Larval Salivary Gland    377.3 Larval Trachea    347.925 Larval Carcass    271.3 Adult Head    210.1 Adult Eye    250.7 Adult Brain    275.9 Adult Thoracic-Abdominal Ganglion    342.6 Adult Crop    202.6 Adult Midgut    133.5 Adult Hindgut    217 Adult Malpighian Tubules    435.3 Adult Fat Body    252.4 Adult Salivary Gland    194.1 Adult Heart    311.675 Adult VirginFemale Spermatheca    177.5 Adult InseminatedFemale Spermatheca    218.2 Adult Ovary    231.5 Adult Testis    107.7 Adult Male Accessory Gland    421.2 Adult Carcass    239.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    338.6 Larval Midgut  715.1 Larval Hindgut    217.3 Larval Malpighian Tubules    211.7 Larval Fat Body    213.1 Larval Salivary Gland    377.3 Larval Trachea    347.925 Larval Carcass    271.3 Adult Head    210.1 Adult Eye    250.7 Adult Brain    275.9 Adult Thoracic-Abdominal Ganglion    342.6 Adult Crop    202.6 Adult Midgut    133.5 Adult Hindgut    217 Adult Malpighian Tubules    435.3 Adult Fat Body    252.4 Adult Salivary Gland    194.1 Adult Heart    311.675 Adult VirginFemale Spermatheca    177.5 Adult InseminatedFemale Spermatheca    218.2 Adult Ovary    231.5 Adult Testis    107.7 Adult Male Accessory Gland    421.2 Adult Carcass    239.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    338.6 Larval Midgut    715.1 Larval Hindgut    217.3 Larval Malpighian Tubules    211.7 Larval Fat Body    213.1 Larval Salivary Gland    377.3 Larval Trachea    347.925 Larval Carcass    271.3 Adult Head    210.1 Adult Eye    250.7 Adult Brain    275.9 Adult Thoracic-Abdominal Ganglion    342.6 Adult Crop    202.6 Adult Midgut    133.5 Adult Hindgut    217 Adult Malpighian Tubules    435.3 Adult Fat Body    252.4 Adult Salivary Gland    194.1 Adult Heart    311.675 Adult VirginFemale Spermatheca    177.5 Adult InseminatedFemale Spermatheca    218.2 Adult Ovary    231.5 Adult Testis    107.7 Adult Male Accessory Gland    421.2 Adult Carcass    239.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    338.6 Larval Midgut    715.1 Larval Hindgut    217.3 Larval Malpighian Tubules    211.7 Larval Fat Body    213.1 Larval Salivary Gland    377.3 Larval Trachea    347.925 Larval Carcass    271.3 Adult Head    210.1 Adult Eye    250.7 Adult Brain    275.9 Adult Thoracic-Abdominal Ganglion    342.6 Adult Crop    202.6 Adult Midgut    133.5 Adult Hindgut    217 Adult Malpighian Tubules    435.3 Adult Fat Body    252.4 Adult Salivary Gland    194.1 Adult Heart    311.675 Adult VirginFemale Spermatheca    177.5 Adult InseminatedFemale Spermatheca    218.2 Adult Ovary    231.5 Adult Testis    107.7 Adult Male Accessory Gland    421.2 Adult Carcass    239.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    210.1   NA  Eye    250.7   NA  Brain    275.9   338.6  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    342.6   NA  Crop    202.6   715.1  Midgut    133.5   217.3  Hindgut    217   211.7  Malpighian Tubules    435.3   213.1  Fat Body    252.4   377.3  Salivary Gland    194.1   NA  Heart    311.675   347.925  Trachea    NA   NA  VirginFemale Spermatheca    177.5   NA  InseminatedFemale Spermatheca    218.2   NA  Ovary    231.5   NA  Testis    107.7   NA  Male Accessory Gland    421.2   271.3  Carcass    239.5 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    27 central nervous system, larvae L3    23 central nervous system, pupae P8    29 head, virgin 1-day female    18 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    19 head, mated 4-day female    18 head, mated 20-day female    11 head, mated 1-day male    17 head, mated 4-day male    28 head, mated 20-day male    32 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    9 digestive system, 4-day adult    12 digestive system, 20-day adult    8 fat body, larvae L3 wandering    21 fat body, white prepupae    17 fat body, pupae P8    42 carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    14 carcass, 20-day adult    11 ovary, virgin 4-day female    28 ovary, mated 4-day female    31 testis, mated 4-day male    21 accessory gland, mated 4-day male    29 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (27) central nervous system, larvae L3    23 central nervous system, pupae P8  (29) head, virgin 1-day female    18 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    19 head, mated 4-day female    18 head, mated 20-day female    11 head, mated 1-day male    17 head, mated 4-day male  (28) head, mated 20-day male  (32) salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    9 digestive system, 4-day adult    12 digestive system, 20-day adult    8 fat body, larvae L3 wandering    21 fat body, white prepupae    17 fat body, pupae P8  (42) carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    14 carcass, 20-day adult    11 ovary, virgin 4-day female  (28) ovary, mated 4-day female  (31) testis, mated 4-day male    21 accessory gland, mated 4-day male  (29) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    27 central nervous system, larvae L3    23 central nervous system, pupae P8    29 head, virgin 1-day female    18 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    19 head, mated 4-day female    18 head, mated 20-day female    11 head, mated 1-day male    17 head, mated 4-day male    28 head, mated 20-day male    32 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    9 digestive system, 4-day adult    12 digestive system, 20-day adult    8 fat body, larvae L3 wandering    21 fat body, white prepupae    17 fat body, pupae P8    42 carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    14 carcass, 20-day adult    11 ovary, virgin 4-day female    28 ovary, mated 4-day female    31 testis, mated 4-day male    21 accessory gland, mated 4-day male    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    27 central nervous system, larvae L3    23 central nervous system, pupae P8    29 head, virgin 1-day female    18 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    19 head, mated 4-day female    18 head, mated 20-day female    11 head, mated 1-day male    17 head, mated 4-day male    28 head, mated 20-day male    32 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    9 digestive system, 4-day adult    12 digestive system, 20-day adult    8 fat body, larvae L3 wandering    21 fat body, white prepupae    17 fat body, pupae P8    42 carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    14 carcass, 20-day adult    11 ovary, virgin 4-day female    28 ovary, mated 4-day female    31 testis, mated 4-day male    21 accessory gland, mated 4-day male    29 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    27 central nervous system, larvae L3    23 central nervous system, pupae P8    29 head, virgin 1-day female    18 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    19 head, mated 4-day female    18 head, mated 20-day female    11 head, mated 1-day male    17 head, mated 4-day male    28 head, mated 20-day male    32 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    9 digestive system, 4-day adult    12 digestive system, 20-day adult    8 fat body, larvae L3 wandering    21 fat body, white prepupae    17 fat body, pupae P8    42 carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    14 carcass, 20-day adult    11 ovary, virgin 4-day female    28 ovary, mated 4-day female    31 testis, mated 4-day male    21 accessory gland, mated 4-day male    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  27 central nervous system, larvae L3    23 central nervous system, pupae P8  29 head, virgin 1-day female    18 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    19 head, mated 4-day female    18 head, mated 20-day female    11 head, mated 1-day male    17 head, mated 4-day male  28 head, mated 20-day male  32 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    9 digestive system, 4-day adult    12 digestive system, 20-day adult    8 fat body, larvae L3 wandering    21 fat body, white prepupae    17 fat body, pupae P8  (42) carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    14 carcass, 20-day adult    11 ovary, virgin 4-day female  28 ovary, mated 4-day female  31 testis, mated 4-day male    21 accessory gland, mated 4-day male  29 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    27 central nervous system, larvae L3    23 central nervous system, pupae P8    29 head, virgin 1-day female    18 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    19 head, mated 4-day female    18 head, mated 20-day female    11 head, mated 1-day male    17 head, mated 4-day male    28 head, mated 20-day male    32 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    9 digestive system, 4-day adult    12 digestive system, 20-day adult    8 fat body, larvae L3 wandering    21 fat body, white prepupae    17 fat body, pupae P8    42 carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    14 carcass, 20-day adult    11 ovary, virgin 4-day female    28 ovary, mated 4-day female    31 testis, mated 4-day male    21 accessory gland, mated 4-day male    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    27 central nervous system, larvae L3    23 central nervous system, pupae P8    29 head, virgin 1-day female    18 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    19 head, mated 4-day female    18 head, mated 20-day female    11 head, mated 1-day male    17 head, mated 4-day male    28 head, mated 20-day male    32 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    6 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    9 digestive system, 4-day adult    12 digestive system, 20-day adult    8 fat body, larvae L3 wandering    21 fat body, white prepupae    17 fat body, pupae P8    42 carcass, larvae L3 wandering    22 carcass, 1-day adult    12 carcass, 4-day adult    14 carcass, 20-day adult    11 ovary, virgin 4-day female    28 ovary, mated 4-day female    31 testis, mated 4-day male    21 accessory gland, mated 4-day male    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during early larval stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    52 embryo 02-04hr    13 embryo 04-06hr    32 embryo 06-08hr    35 embryo 08-10hr    32 embryo 10-12hr    38 embryo 12-14hr    28 embryo 14-16hr    32 embryo 16-18hr    29 embryo 18-20hr    27 embryo 20-22hr    31 embryo 22-24hr    30 larva L1    67 larva L2    93 larva L3 12hr old    67 larva L3 puffstage 1-2    41 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    36 white prepupae new    36 white prepupae 12hr    42 white prepupae 24hr    42 pupae 2d postWPP    39 pupae 3d postWPP    22 pupae 4d postWPP    15 adult male 01day    23 adult male 05day    29 adult male 30day    33 adult female 01day    34 adult female 05day    48 adult female 30day    48 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (52) embryo 02-04hr    13 embryo 04-06hr  (32) embryo 06-08hr  (35) embryo 08-10hr  (32) embryo 10-12hr  (38) embryo 12-14hr  (28) embryo 14-16hr  (32) embryo 16-18hr  (29) embryo 18-20hr  (27) embryo 20-22hr  (31) embryo 22-24hr  (30) larva L1  (67) larva L2  (93) larva L3 12hr old  (67) larva L3 puffstage 1-2  (41) larva L3 puffstage 3-6  (35) larva L3 puffstage 7-9  (36) white prepupae new  (36) white prepupae 12hr  (42) white prepupae 24hr  (42) pupae 2d postWPP  (39) pupae 3d postWPP    22 pupae 4d postWPP    15 adult male 01day    23 adult male 05day  (29) adult male 30day  (33) adult female 01day  (34) adult female 05day  (48) adult female 30day  (48) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    52 embryo 02-04hr    13 embryo 04-06hr    32 embryo 06-08hr    35 embryo 08-10hr    32 embryo 10-12hr    38 embryo 12-14hr    28 embryo 14-16hr    32 embryo 16-18hr    29 embryo 18-20hr    27 embryo 20-22hr    31 embryo 22-24hr    30 larva L1    67 larva L2    93 larva L3 12hr old    67 larva L3 puffstage 1-2    41 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    36 white prepupae new    36 white prepupae 12hr    42 white prepupae 24hr    42 pupae 2d postWPP    39 pupae 3d postWPP    22 pupae 4d postWPP    15 adult male 01day    23 adult male 05day    29 adult male 30day    33 adult female 01day    34 adult female 05day    48 adult female 30day    48 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    52 embryo 02-04hr    13 embryo 04-06hr    32 embryo 06-08hr    35 embryo 08-10hr    32 embryo 10-12hr    38 embryo 12-14hr    28 embryo 14-16hr    32 embryo 16-18hr    29 embryo 18-20hr    27 embryo 20-22hr    31 embryo 22-24hr    30 larva L1    67 larva L2    93 larva L3 12hr old    67 larva L3 puffstage 1-2    41 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    36 white prepupae new    36 white prepupae 12hr    42 white prepupae 24hr    42 pupae 2d postWPP    39 pupae 3d postWPP    22 pupae 4d postWPP    15 adult male 01day    23 adult male 05day    29 adult male 30day    33 adult female 01day    34 adult female 05day    48 adult female 30day    48 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    52 embryo 02-04hr    13 embryo 04-06hr    32 embryo 06-08hr    35 embryo 08-10hr    32 embryo 10-12hr    38 embryo 12-14hr    28 embryo 14-16hr    32 embryo 16-18hr    29 embryo 18-20hr    27 embryo 20-22hr    31 embryo 22-24hr    30 larva L1    67 larva L2    93 larva L3 12hr old    67 larva L3 puffstage 1-2    41 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    36 white prepupae new    36 white prepupae 12hr    42 white prepupae 24hr    42 pupae 2d postWPP    39 pupae 3d postWPP    22 pupae 4d postWPP    15 adult male 01day    23 adult male 05day    29 adult male 30day    33 adult female 01day    34 adult female 05day    48 adult female 30day    48 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (52) embryo 02-04hr    13 embryo 04-06hr  32 embryo 06-08hr  (35) embryo 08-10hr  32 embryo 10-12hr  (38) embryo 12-14hr  28 embryo 14-16hr  32 embryo 16-18hr  29 embryo 18-20hr  27 embryo 20-22hr  31 embryo 22-24hr  30 larva L1  (67) larva L2  (93) larva L3 12hr old  (67) larva L3 puffstage 1-2  (41) larva L3 puffstage 3-6  (35) larva L3 puffstage 7-9  (36) white prepupae new  (36) white prepupae 12hr  (42) white prepupae 24hr  (42) pupae 2d postWPP  (39) pupae 3d postWPP    22 pupae 4d postWPP    15 adult male 01day    23 adult male 05day  29 adult male 30day  (33) adult female 01day  (34) adult female 05day  (48) adult female 30day  (48) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    52 embryo 02-04hr    13 embryo 04-06hr    32 embryo 06-08hr    35 embryo 08-10hr    32 embryo 10-12hr    38 embryo 12-14hr    28 embryo 14-16hr    32 embryo 16-18hr    29 embryo 18-20hr    27 embryo 20-22hr    31 embryo 22-24hr    30 larva L1    67 larva L2    93 larva L3 12hr old    67 larva L3 puffstage 1-2    41 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    36 white prepupae new    36 white prepupae 12hr    42 white prepupae 24hr    42 pupae 2d postWPP    39 pupae 3d postWPP    22 pupae 4d postWPP    15 adult male 01day    23 adult male 05day    29 adult male 30day    33 adult female 01day    34 adult female 05day    48 adult female 30day    48 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    52 embryo 02-04hr    13 embryo 04-06hr    32 embryo 06-08hr    35 embryo 08-10hr    32 embryo 10-12hr    38 embryo 12-14hr    28 embryo 14-16hr    32 embryo 16-18hr    29 embryo 18-20hr    27 embryo 20-22hr    31 embryo 22-24hr    30 larva L1    67 larva L2    93 larva L3 12hr old    67 larva L3 puffstage 1-2    41 larva L3 puffstage 3-6    35 larva L3 puffstage 7-9    36 white prepupae new    36 white prepupae 12hr    42 white prepupae 24hr    42 pupae 2d postWPP    39 pupae 3d postWPP    22 pupae 4d postWPP    15 adult male 01day    23 adult male 05day    29 adult male 30day    33 adult female 01day    34 adult female 05day    48 adult female 30day    48 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    68 Schneider line 2 Sg4    65 embryonic 1182-4H    26 embryonic GM2    35 embryonic Kc167    30 embryonic S1    34 embryonic S3    92 leg disc CME L1    44 wing disc CME-W2    62 wing disc ML-DmD8    29 wing disc ML-DmD9    34 wing disc ML-DmD16-c3    55 wing disc ML-DmD21    34 wing disc ML-DmD32    33 haltere disc ML-DmD17-c3    37 eye-antennal disc ML-DmD11    41 antennal disc ML-DmD20-c5    61 mixed discs ML-DmD4-c1    64 CNS ML-DmBG1-c1    57 CNS ML-DmBG2-c2    60 tumorous blood cells mbn2    74 ovary fGS/OSS    13 ovary OSC    19 ovary OSS    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (68) Schneider line 2 Sg4  (65) embryonic 1182-4H  26 embryonic GM2  (35) embryonic Kc167  (30) embryonic S1  (34) embryonic S3  (92) leg disc CME L1  (44) wing disc CME-W2  (62) wing disc ML-DmD8  (29) wing disc ML-DmD9  (34) wing disc ML-DmD16-c3  (55) wing disc ML-DmD21  (34) wing disc ML-DmD32  (33) haltere disc ML-DmD17-c3  (37) eye-antennal disc ML-DmD11  (41) antennal disc ML-DmD20-c5  (61) mixed discs ML-DmD4-c1  (64) CNS ML-DmBG1-c1  (57) CNS ML-DmBG2-c2  (60) tumorous blood cells mbn2  (74) ovary fGS/OSS    13 ovary OSC    19 ovary OSS    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    68 Schneider line 2 Sg4    65 embryonic 1182-4H    26 embryonic GM2    35 embryonic Kc167    30 embryonic S1    34 embryonic S3    92 leg disc CME L1    44 wing disc CME-W2    62 wing disc ML-DmD8    29 wing disc ML-DmD9    34 wing disc ML-DmD16-c3    55 wing disc ML-DmD21    34 wing disc ML-DmD32    33 haltere disc ML-DmD17-c3    37 eye-antennal disc ML-DmD11    41 antennal disc ML-DmD20-c5    61 mixed discs ML-DmD4-c1    64 CNS ML-DmBG1-c1    57 CNS ML-DmBG2-c2    60 tumorous blood cells mbn2    74 ovary fGS/OSS    13 ovary OSC    19 ovary OSS    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    68 Schneider line 2 Sg4    65 embryonic 1182-4H    26 embryonic GM2    35 embryonic Kc167    30 embryonic S1    34 embryonic S3    92 leg disc CME L1    44 wing disc CME-W2    62 wing disc ML-DmD8    29 wing disc ML-DmD9    34 wing disc ML-DmD16-c3    55 wing disc ML-DmD21    34 wing disc ML-DmD32    33 haltere disc ML-DmD17-c3    37 eye-antennal disc ML-DmD11    41 antennal disc ML-DmD20-c5    61 mixed discs ML-DmD4-c1    64 CNS ML-DmBG1-c1    57 CNS ML-DmBG2-c2    60 tumorous blood cells mbn2    74 ovary fGS/OSS    13 ovary OSC    19 ovary OSS    16 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    68 Schneider line 2 Sg4    65 embryonic 1182-4H    26 embryonic GM2    35 embryonic Kc167    30 embryonic S1    34 embryonic S3    92 leg disc CME L1    44 wing disc CME-W2    62 wing disc ML-DmD8    29 wing disc ML-DmD9    34 wing disc ML-DmD16-c3    55 wing disc ML-DmD21    34 wing disc ML-DmD32    33 haltere disc ML-DmD17-c3    37 eye-antennal disc ML-DmD11    41 antennal disc ML-DmD20-c5    61 mixed discs ML-DmD4-c1    64 CNS ML-DmBG1-c1    57 CNS ML-DmBG2-c2    60 tumorous blood cells mbn2    74 ovary fGS/OSS    13 ovary OSC    19 ovary OSS    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (68) Schneider line 2 Sg4  (65) embryonic 1182-4H  26 embryonic GM2  (35) embryonic Kc167  30 embryonic S1  (34) embryonic S3  (92) leg disc CME L1  (44) wing disc CME-W2  (62) wing disc ML-DmD8  29 wing disc ML-DmD9  (34) wing disc ML-DmD16-c3  (55) wing disc ML-DmD21  (34) wing disc ML-DmD32  (33) haltere disc ML-DmD17-c3  (37) eye-antennal disc ML-DmD11  (41) antennal disc ML-DmD20-c5  (61) mixed discs ML-DmD4-c1  (64) CNS ML-DmBG1-c1  (57) CNS ML-DmBG2-c2  (60) tumorous blood cells mbn2  (74) ovary fGS/OSS    13 ovary OSC    19 ovary OSS    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    68 Schneider line 2 Sg4    65 embryonic 1182-4H    26 embryonic GM2    35 embryonic Kc167    30 embryonic S1    34 embryonic S3    92 leg disc CME L1    44 wing disc CME-W2    62 wing disc ML-DmD8    29 wing disc ML-DmD9    34 wing disc ML-DmD16-c3    55 wing disc ML-DmD21    34 wing disc ML-DmD32    33 haltere disc ML-DmD17-c3    37 eye-antennal disc ML-DmD11    41 antennal disc ML-DmD20-c5    61 mixed discs ML-DmD4-c1    64 CNS ML-DmBG1-c1    57 CNS ML-DmBG2-c2    60 tumorous blood cells mbn2    74 ovary fGS/OSS    13 ovary OSC    19 ovary OSS    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    68 Schneider line 2 Sg4    65 embryonic 1182-4H    26 embryonic GM2    35 embryonic Kc167    30 embryonic S1    34 embryonic S3    92 leg disc CME L1    44 wing disc CME-W2    62 wing disc ML-DmD8    29 wing disc ML-DmD9    34 wing disc ML-DmD16-c3    55 wing disc ML-DmD21    34 wing disc ML-DmD32    33 haltere disc ML-DmD17-c3    37 eye-antennal disc ML-DmD11    41 antennal disc ML-DmD20-c5    61 mixed discs ML-DmD4-c1    64 CNS ML-DmBG1-c1    57 CNS ML-DmBG2-c2    60 tumorous blood cells mbn2    74 ovary fGS/OSS    13 ovary OSC    19 ovary OSS    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    8 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    41 Cadmium 50 mM 12 hrs, larvae L3    38 Cadmium 50 mM 48 hrs, 4-day adult    36 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    37 Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    62 Ethanol 10% 3 hrs, larvae L3    39 Caffeine 1.5 mg/ml 4 hrs, larvae L3    34 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3    59 Rotenone 8 μg 12 hrs, larvae L3    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    8 heat shock, 4-day adult  (29) Cadmium 50 mM 6 hrs, larvae L3  (41) Cadmium 50 mM 12 hrs, larvae L3  (38) Cadmium 50 mM 48 hrs, 4-day adult  (36) Cadmium 100 mM 48 hrs, 4-day adult  (29) Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult  (37) Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3  (62) Ethanol 10% 3 hrs, larvae L3  (39) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (34) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3  (59) Rotenone 8 μg 12 hrs, larvae L3  (37) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    8 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    41 Cadmium 50 mM 12 hrs, larvae L3    38 Cadmium 50 mM 48 hrs, 4-day adult    36 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    37 Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    62 Ethanol 10% 3 hrs, larvae L3    39 Caffeine 1.5 mg/ml 4 hrs, larvae L3    34 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3    59 Rotenone 8 μg 12 hrs, larvae L3    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    8 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    41 Cadmium 50 mM 12 hrs, larvae L3    38 Cadmium 50 mM 48 hrs, 4-day adult    36 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    37 Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    62 Ethanol 10% 3 hrs, larvae L3    39 Caffeine 1.5 mg/ml 4 hrs, larvae L3    34 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3    59 Rotenone 8 μg 12 hrs, larvae L3    37 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    8 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    41 Cadmium 50 mM 12 hrs, larvae L3    38 Cadmium 50 mM 48 hrs, 4-day adult    36 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    37 Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    62 Ethanol 10% 3 hrs, larvae L3    39 Caffeine 1.5 mg/ml 4 hrs, larvae L3    34 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3    59 Rotenone 8 μg 12 hrs, larvae L3    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    8 heat shock, 4-day adult  29 Cadmium 50 mM 6 hrs, larvae L3  (41) Cadmium 50 mM 12 hrs, larvae L3  (38) Cadmium 50 mM 48 hrs, 4-day adult  (36) Cadmium 100 mM 48 hrs, 4-day adult  29 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult  (37) Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3  (62) Ethanol 10% 3 hrs, larvae L3  (39) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (34) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3  (59) Rotenone 8 μg 12 hrs, larvae L3  (37) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    8 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    41 Cadmium 50 mM 12 hrs, larvae L3    38 Cadmium 50 mM 48 hrs, 4-day adult    36 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    37 Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    62 Ethanol 10% 3 hrs, larvae L3    39 Caffeine 1.5 mg/ml 4 hrs, larvae L3    34 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3    59 Rotenone 8 μg 12 hrs, larvae L3    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    8 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    41 Cadmium 50 mM 12 hrs, larvae L3    38 Cadmium 50 mM 48 hrs, 4-day adult    36 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    22 Copper 15 mM 48 hrs, 4-day adult    37 Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    62 Ethanol 10% 3 hrs, larvae L3    39 Caffeine 1.5 mg/ml 4 hrs, larvae L3    34 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    20 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    20 Paraquat 10 mM 48 hrs, 4-day adult    20 Rotenone 2 μg 12 hrs, larvae L3    59 Rotenone 8 μg 12 hrs, larvae L3    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_26 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • RE68138 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031662 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3792-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG3792 Stages(s) 1-3 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG3792GD899 CG3792GD17089 Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG3792 Class Mutagen Stocks Known lesion CG3792d02169 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG3792 Class Mutagen Stocks Known lesion CG3792GD17089 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG3792GD899 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG3792NIG.3792R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel7021 (Ryder, 2004.4.26) Df(2L)Exel8013 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD899} NA P{GD17089} NA P{NIG.3792R} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}CG14043EY03612 NA P{XP}CG3792d02169 NA
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
protein glycosylation inferred from sequence or structural similarity with UniProtKB:O75352 (Curators, 2008--)
Cellular Component
CV term Evidence References
integral to membrane inferred from sequence model (Curators, 2008--)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG3792 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 59901 DroID - A comprehensive database of gene and protein interactions. • FBgn0031662 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33717
Orthologs
OrthoDB Orthologs (40) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG62FT3W Dipteran inclusive ortholog search EOG6868NH Insect inclusive ortholog search EOG66DJZT Arthropod inclusive ortholog search EOG6N8PMT Metazoa inclusive ortholog search EOG6QG880
Orthologs in Drosophila Species (EOG62FT3W)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG3792     Drosophila simulans   Dsim\GD23315 Y   Drosophila sechellia   Dsec\GM18511 Y   Drosophila erecta   Dere\GG25037 Y   Drosophila yakuba   Dyak\GE11282 Y   Drosophila ananassae   Dana\GF15707 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA17688 Y   Drosophila persimilis   Dper\GL26539 Y   Drosophila willistoni   Dwil\GK24464 Y   Drosophila virilis   Dvir\GJ17483 Y   Drosophila mojavensis   Dmoj\GI21484 Y   Drosophila grimshawi   Dgri\GH13077 Y
Orthologs in non-Drosophila Dipterans (EOG6868NH)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL008594   Anopheles gambiae Malaria mosquito  Agam\AGAP008375   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ801677
Orthologs in non-Dipteran Insects (EOG66DJZT)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC410429   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG024984   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH16929   Atta cephalotes Leafcutter ant  Acep\ACEP21357   Camponotus floridanus Florida carpenter ant  Cflo\CFLO15298   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL13325   Linepithema humile Argentine ant  Lhum\LH18393   Pogonomyrmex barbatus Red harvester ant  Pbar\PB22611   Solenopsis invicta Red fire ant  Sinv\SINV23821   Acyrthosiphon pisum Pea aphid  Apim\ACYPI007743   Bombyx mori Silkmoth  Bmor\BGIBMGA006154   Pediculus humanus Human body louse  Phum\PHUM462910   Tribolium castaneum Red flour beetle  Tcas\TC013726
Orthologs in non-Insect Arthropods (EOG6N8PMT)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_31031   Ixodes scapularis Deer tick  Isca\ISCW005098   Ixodes scapularis Deer tick  Isca\ISCW005096
Orthologs in non-Arthropod Metazoa (EOG6QG880)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\F38E1.9   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_008271gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_020128gn   Danio rerio Zebrafish  Drer\mpdu1b   Danio rerio Zebrafish  Drer\mpdu1a   Xenopus tropicalis Western clawed frog  Xtro\mpdu1   Mus musculus House mouse  Mmus\Mpdu1   Rattus norvegicus Norway rat  Rnor\Mpdu1   Homo sapiens Human  Hsap\MPDU1
Human Orthologs (1)
Gene OMIM HGNC Hsap\MPDU1
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD23315 Drosophila sechellia Dsec\GM18511 Drosophila erecta Dere\GG25037 Drosophila yakuba Dyak\GE11282 Drosophila ananassae Dana\GF15707 Drosophila pseudoobscura pseudoobscura Dpse\GA17688 Drosophila persimilis Dper\GL26539 Drosophila willistoni Dwil\GK24464 Drosophila virilis Dvir\GJ17483 Drosophila mojavensis Dmoj\GI21484 Drosophila grimshawi Dgri\GH13077
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Harvard	- P{XP}CG3792d02169
VDRC	v7862 w1118; P{GD899}v7862 v7863 w1118; P{GD899}v7863 v48231 w1118; P{GD17089}v48231 v48233 w1118; P{GD17089}v48233/TM3
Genomic Clones ( 2 )
	BACR13M11 BACR40I04 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 103 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE68138
Other clones	AF171765
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT24839 GM06940 RE28489
Other clones	51296 Dmel_neb_012446_0678_1814 EC22236 EK076030 EK177330 EK197716 EN10355 RP003000549 RP003010141 RP003010979 RP003012087 RP003016479 RP003018032 RP003025386 RP003028057 RP003028791 RP003030475 RP003034342 RP003043849 RP003046932 RP003052964 RP003054596 RP003075401 RP003075694 RP003081658 RP003083741 RP003089863 RP003101391 RP003116495 RP003128813 RP003163877 RP003165031 RP003167235 RP003167524 RP003178337 RP003183607 RP003188832 RP003203212 RP003203837 RP003214185 RP003215178 RP003232617 RP003244652 RP003261166 RP003265482 RP003272541 RP003277662 RP003285665 RP003293011 RP003294146 RP003302529 RP003307027 RP003312082 RP003312270 RP003324000 RP003332201 RP003356905 RP003367047 RP003367403 RP003377091 RP003384403 RP003384611 RP003386695 RP003387620 RP003400974 RP003420216 RP003420431 RP003421492 RP003425085 RP003442927 RP003443121 RP003448855 RP003451837 RP003453027 RP003463657 RP003468246 RP003475401 RP003479353 RP003484264 RP003490726 RP003498339 RP003502069 RP003508914 RP003514106 RP003531929 RP003535098 RP003545458 RP003558053 RP003569710 RP003571523 RP003580811 RP003597425 RP003630657 RP003646873 RP003649616 RP003657746 RP003680367 UT01157
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0031662 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33717
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG3792 anon-EST:Posey8 (Bayraktaroglu, 2000.11.2)
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_135045 RefSeq (Proteins) • NP_608889 DDBJ / EMBL / GenBank • AAF52190 AAF52190.2 AAO45206 AF171765 BI484943 BT004850 CZ472654 Entrez Gene - A searchable database of RefSeq genes. • 33717 UniProtKB/Swiss-Prot • Q9VMW8
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Cystinosin/ERS1p repeat (IPR006603) Mannose-P-dolichol utilization defect 1 protein (IPR016817) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE68138
Linkouts
	BioGRID - A database of protein and genetic interactions • 59901 DroID - A comprehensive database of gene and protein interactions. • FBgn0031662 DRSC - Results from RNAi screens. • FBgn0031662 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031662 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3792-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0031662 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33717 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33717 modMine - Data generated by the modENCODE project. • FBgn0031662
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	anon-EST:Posey8   CG3792 (Cammarato et al., 2011, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
	FBgn0027670
References ( 20 )
Research paper	Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812] Ponting et al., 2001, Genome Res. 11(12): 1996--2008 Novel protein domains and repeats in Drosophila melanogaster: insights into structure, function, and evolution. [FBrf0141558]
Supplementary material	Cammarato et al., 2011, PLoS ONE 6(4): Table S1. Proteins & Peptides. [FBrf0214682] Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Review	Roos et al., 2002, J. Biol. Chem. 277(5): 3168--3175 Composition of Drosophila melanogaster proteome involved in fucosylated glycan metabolism. [FBrf0144936]
Personal communication to FlyBase	Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file) Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] Bayraktaroglu, 2000.11.2, Current list of possibly CG-able known genes. Current list of possibly CG-able known genes. [FBrf0131225] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078] Misra, 2000.11.18, nc5 report, third installment. nc5 report, third installment. [FBrf0132131]
FlyBase analysis	Curators, 2008--, Assigning Gene Ontology (GO) terms by sequence similarity in FlyBase. Assigning Gene Ontology (GO) terms by sequence similarity in FlyBase. [FBrf0202953] FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]
Protein sequence record	Swiss-Prot Project Members, 2000.10.1, UniProtKB: Q9VMW8 MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 PROTEIN HOMOLOG. [FBrf0136215]