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Gene Dmel\CG3887

General Information
Symbol	Dmel\CG3887	Species	D. melanogaster
Name		Annotation symbol	CG3887
Feature type	protein_coding_gene	FlyBase ID	FBgn0031670
Gene Model Status	Current	Stock availability	1 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	25C1-25C1	Sequence location	2L:5,010,922..5,012,127 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG3887 (FBgn0031670). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: selenium binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: cell redox homeostasis. 4 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Selenoprotein T; Selenoprotein, Rdx type; Thioredoxin-like fold. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult crop. Comments on Affy2 ProbeSet: ProbeSet 1624032_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG3887. Gene sequence location is 2L:5010922..5012127.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 25C1-25C1   Limits computationally determined from genome sequence between P{lacW}l(2)k10001k10001 and P{lacW}vkgk16721&P{lacW}Cg25Ck00405
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG3887 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.45
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG3887-RA FBtr0079000  NM_135053   960   198 CG3887-RB FBtr0332411  NM_001273140   908   198 CG3887-RC FBtr0332412  NM_001273141   1130   198
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG3887-PA   FBpp0078639   22.3   198   5.75     NP_608897   AAF52202 CG3887-PB   FBpp0304684   22.3   198   5.75     NP_001260069   AGB92605 CG3887-PC   FBpp0304685   22.3   198   5.75     NP_001260070   AGB92606
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Selenoprotein, Rdx type (IPR011893) Selenoprotein T (IPR019389) Thioredoxin-like fold (IPR012336)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA141482   AA141483   AA392087   AA697164   AA979327   AE014134 AAF52202   AE014134 AGB92605   AE014134 AGB92606   AI109660   AI293183   AI387010   AI388319   AI389163   AI514910   AI520545   AI543836   AW943203   AY061409 AAL28957   BF488111   BF490655   BF503456   BG635795   BI167823   BI169946   BI215952   BI229366   BI229377   BI236485   BI238366   BI238424   BI239556   BI351816   BI361381   BI362665   BI363749   BI366046   BI366339   BI366867   BI372393   BI572538   BI574980   BI575126   BI578654   BI580556   BI583649   BI586576   BP546899   BP555827   BP555828   BP560409   BP560411   CO156816   CO178739   CO179647   CO266432   CO268911   CO281105   CO288415   CO294028   CO304594   CO307860   CO318983   CO336342   CO336788   CO337683   EC061546   EC066163   EC069875   EC075374   EC076805   EC081332   EC081562   EC089856   EC213131   EC233652   EC239052   EC243044   EC248697   EC261484   EC261579   EC265829   EC267787   GH753996   GH758478   GH772245   GH772771   GH774276   GH776386   GH782007   GH782289   GH782446   GH783528   GH787405   GH789260   GH792039   GH792473   GH792562   GH794287   GH796231   GH797160   GH799290   GH799588   GH801333   GH801750   GH802661   GH803270   GH804668   GH806240   GH808758   GH810984   GH811786   GH814399   GH817904   GH820676   GH821293   GH823019   GH823484   GH823937   GH824952   GH825371   GH825424   GH826071   GH827997   GH829946   GH831513   GH832503   GH839045   GH840476   GH841875   GH842077   GH842336   GH842415   GH843837   GH844607   GH852962   GH854684   GH856817   GH859508   GH860710   GH860735   GH862469   GH864790   GH866553   GH868833   GH869454   GH869644   GH873617   GH874820   GH875626   GH875637   GH876473   GH877279   GH878256   GH880437   GH881414   GH883059   GH883689   GH885099   GH889000   GH890089   GH891368   GH893131   GH894818   GH895056   GH895908   GH897304   GH897513   GH898612   GH899516   GH903369   GH905388   GH914335   GH917075   GH917301   GH918278   GH919563   GH920767   GH920877   GH921291   GH921293   GH922216   GH922490   GH925183   GH928639   GH928975   GH935829   GH939119   GH939572   GH940157   GH940175   GH941068   GH942417
UniProtKB/Swiss-Prot	Q9VMV6
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult crop. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    572.15 Larval Midgut    616.6 Larval Hindgut    659.6 Larval Malpighian Tubules    1349.2 Larval Fat Body    1199.9 Larval Salivary Gland    822.1 Larval Trachea    814.075 Larval Carcass    677.6 Adult Head    660.8 Adult Eye    1196.05 Adult Brain    515 Adult Thoracic-Abdominal Ganglion    610 Adult Crop    468.8 Adult Midgut    796.3 Adult Hindgut    593.6 Adult Malpighian Tubules    671.6 Adult Fat Body    656.5 Adult Salivary Gland    594.9 Adult Heart    1016.45 Adult VirginFemale Spermatheca    521.2 Adult InseminatedFemale Spermatheca    512.9 Adult Ovary    779.7 Adult Testis    718.1 Adult Male Accessory Gland    791.8 Adult Carcass    769.4 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (572.15) Larval Midgut  (616.6) Larval Hindgut  (659.6) Larval Malpighian Tubules  (1349.2) Larval Fat Body  (1199.9) Larval Salivary Gland  (822.1) Larval Trachea  (814.075) Larval Carcass  (677.6) Adult Head  (660.8) Adult Eye  (1196.05) Adult Brain  515 Adult Thoracic-Abdominal Ganglion  (610) Adult Crop    468.8 Adult Midgut  (796.3) Adult Hindgut  (593.6) Adult Malpighian Tubules  (671.6) Adult Fat Body  (656.5) Adult Salivary Gland  (594.9) Adult Heart  (1016.45) Adult VirginFemale Spermatheca  521.2 Adult InseminatedFemale Spermatheca  512.9 Adult Ovary  (779.7) Adult Testis  (718.1) Adult Male Accessory Gland  (791.8) Adult Carcass  (769.4) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    572.15 Larval Midgut    616.6 Larval Hindgut    659.6 Larval Malpighian Tubules  (1349.2) Larval Fat Body  (1199.9) Larval Salivary Gland    822.1 Larval Trachea    814.075 Larval Carcass    677.6 Adult Head    660.8 Adult Eye  (1196.05) Adult Brain    515 Adult Thoracic-Abdominal Ganglion    610 Adult Crop    468.8 Adult Midgut    796.3 Adult Hindgut    593.6 Adult Malpighian Tubules    671.6 Adult Fat Body    656.5 Adult Salivary Gland    594.9 Adult Heart  1016.45 Adult VirginFemale Spermatheca    521.2 Adult InseminatedFemale Spermatheca    512.9 Adult Ovary    779.7 Adult Testis    718.1 Adult Male Accessory Gland    791.8 Adult Carcass    769.4 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    572.15 Larval Midgut    616.6 Larval Hindgut    659.6 Larval Malpighian Tubules    1349.2 Larval Fat Body    1199.9 Larval Salivary Gland    822.1 Larval Trachea    814.075 Larval Carcass    677.6 Adult Head    660.8 Adult Eye    1196.05 Adult Brain    515 Adult Thoracic-Abdominal Ganglion    610 Adult Crop    468.8 Adult Midgut    796.3 Adult Hindgut    593.6 Adult Malpighian Tubules    671.6 Adult Fat Body    656.5 Adult Salivary Gland    594.9 Adult Heart    1016.45 Adult VirginFemale Spermatheca    521.2 Adult InseminatedFemale Spermatheca    512.9 Adult Ovary    779.7 Adult Testis    718.1 Adult Male Accessory Gland    791.8 Adult Carcass    769.4 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    572.15 Larval Midgut    616.6 Larval Hindgut    659.6 Larval Malpighian Tubules    1349.2 Larval Fat Body    1199.9 Larval Salivary Gland    822.1 Larval Trachea    814.075 Larval Carcass    677.6 Adult Head    660.8 Adult Eye    1196.05 Adult Brain    515 Adult Thoracic-Abdominal Ganglion    610 Adult Crop    468.8 Adult Midgut    796.3 Adult Hindgut    593.6 Adult Malpighian Tubules    671.6 Adult Fat Body    656.5 Adult Salivary Gland    594.9 Adult Heart    1016.45 Adult VirginFemale Spermatheca    521.2 Adult InseminatedFemale Spermatheca    512.9 Adult Ovary    779.7 Adult Testis    718.1 Adult Male Accessory Gland    791.8 Adult Carcass    769.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  572.15 Larval Midgut  616.6 Larval Hindgut  659.6 Larval Malpighian Tubules  (1349.2) Larval Fat Body  (1199.9) Larval Salivary Gland  (822.1) Larval Trachea  (814.075) Larval Carcass  677.6 Adult Head  660.8 Adult Eye  (1196.05) Adult Brain  515 Adult Thoracic-Abdominal Ganglion  610 Adult Crop    468.8 Adult Midgut  796.3 Adult Hindgut  593.6 Adult Malpighian Tubules  671.6 Adult Fat Body  656.5 Adult Salivary Gland  594.9 Adult Heart  (1016.45) Adult VirginFemale Spermatheca  521.2 Adult InseminatedFemale Spermatheca  512.9 Adult Ovary  779.7 Adult Testis  718.1 Adult Male Accessory Gland  791.8 Adult Carcass  769.4 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    572.15 Larval Midgut    616.6 Larval Hindgut    659.6 Larval Malpighian Tubules  1349.2 Larval Fat Body  1199.9 Larval Salivary Gland    822.1 Larval Trachea    814.075 Larval Carcass    677.6 Adult Head    660.8 Adult Eye  1196.05 Adult Brain    515 Adult Thoracic-Abdominal Ganglion    610 Adult Crop    468.8 Adult Midgut    796.3 Adult Hindgut    593.6 Adult Malpighian Tubules    671.6 Adult Fat Body    656.5 Adult Salivary Gland    594.9 Adult Heart  1016.45 Adult VirginFemale Spermatheca    521.2 Adult InseminatedFemale Spermatheca    512.9 Adult Ovary    779.7 Adult Testis    718.1 Adult Male Accessory Gland    791.8 Adult Carcass    769.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    572.15 Larval Midgut    616.6 Larval Hindgut    659.6 Larval Malpighian Tubules    1349.2 Larval Fat Body    1199.9 Larval Salivary Gland    822.1 Larval Trachea    814.075 Larval Carcass    677.6 Adult Head    660.8 Adult Eye    1196.05 Adult Brain    515 Adult Thoracic-Abdominal Ganglion    610 Adult Crop    468.8 Adult Midgut    796.3 Adult Hindgut    593.6 Adult Malpighian Tubules    671.6 Adult Fat Body    656.5 Adult Salivary Gland    594.9 Adult Heart    1016.45 Adult VirginFemale Spermatheca    521.2 Adult InseminatedFemale Spermatheca    512.9 Adult Ovary    779.7 Adult Testis    718.1 Adult Male Accessory Gland    791.8 Adult Carcass    769.4 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    660.8   NA  Eye    1196.05   NA  Brain    515   572.15  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    610   NA  Crop    468.8   616.6  Midgut    796.3   659.6  Hindgut    593.6   1349.2  Malpighian Tubules    671.6   1199.9  Fat Body    656.5   822.1  Salivary Gland    594.9   NA  Heart    1016.45   814.075  Trachea    NA   NA  VirginFemale Spermatheca    521.2   NA  InseminatedFemale Spermatheca    512.9   NA  Ovary    779.7   NA  Testis    718.1   NA  Male Accessory Gland    791.8   677.6  Carcass    769.4 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    105 central nervous system, larvae L3    98 central nervous system, pupae P8    74 head, virgin 1-day female    56 head, virgin 4-day female    53 head, virgin 20-day female    45 head, mated 1-day female    48 head, mated 4-day female    66 head, mated 20-day female    45 head, mated 1-day male    59 head, mated 4-day male    114 head, mated 20-day male    148 salivary gland, larvae L3 wandering    25 salivary gland, white prepupae    44 digestive system, larvae L3 wandering    87 digestive system, 1-day adult    91 digestive system, 4-day adult    87 digestive system, 20-day adult    62 fat body, larvae L3 wandering    53 fat body, white prepupae    120 fat body, pupae P8    74 carcass, larvae L3 wandering    87 carcass, 1-day adult    51 carcass, 4-day adult    64 carcass, 20-day adult    44 ovary, virgin 4-day female    150 ovary, mated 4-day female    121 testis, mated 4-day male    405 accessory gland, mated 4-day male    102 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (105) central nervous system, larvae L3  (98) central nervous system, pupae P8  (74) head, virgin 1-day female  (56) head, virgin 4-day female  (53) head, virgin 20-day female  (45) head, mated 1-day female  (48) head, mated 4-day female  (66) head, mated 20-day female  (45) head, mated 1-day male  (59) head, mated 4-day male  (114) head, mated 20-day male  (148) salivary gland, larvae L3 wandering    25 salivary gland, white prepupae  (44) digestive system, larvae L3 wandering  (87) digestive system, 1-day adult  (91) digestive system, 4-day adult  (87) digestive system, 20-day adult  (62) fat body, larvae L3 wandering  (53) fat body, white prepupae  (120) fat body, pupae P8  (74) carcass, larvae L3 wandering  (87) carcass, 1-day adult  (51) carcass, 4-day adult  (64) carcass, 20-day adult  (44) ovary, virgin 4-day female  (150) ovary, mated 4-day female  (121) testis, mated 4-day male  (405) accessory gland, mated 4-day male  (102) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  105 central nervous system, larvae L3    98 central nervous system, pupae P8    74 head, virgin 1-day female    56 head, virgin 4-day female    53 head, virgin 20-day female    45 head, mated 1-day female    48 head, mated 4-day female    66 head, mated 20-day female    45 head, mated 1-day male    59 head, mated 4-day male  (114) head, mated 20-day male  (148) salivary gland, larvae L3 wandering    25 salivary gland, white prepupae    44 digestive system, larvae L3 wandering    87 digestive system, 1-day adult    91 digestive system, 4-day adult    87 digestive system, 20-day adult    62 fat body, larvae L3 wandering    53 fat body, white prepupae  (120) fat body, pupae P8    74 carcass, larvae L3 wandering    87 carcass, 1-day adult    51 carcass, 4-day adult    64 carcass, 20-day adult    44 ovary, virgin 4-day female  (150) ovary, mated 4-day female  (121) testis, mated 4-day male  (405) accessory gland, mated 4-day male  102 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    105 central nervous system, larvae L3    98 central nervous system, pupae P8    74 head, virgin 1-day female    56 head, virgin 4-day female    53 head, virgin 20-day female    45 head, mated 1-day female    48 head, mated 4-day female    66 head, mated 20-day female    45 head, mated 1-day male    59 head, mated 4-day male    114 head, mated 20-day male    148 salivary gland, larvae L3 wandering    25 salivary gland, white prepupae    44 digestive system, larvae L3 wandering    87 digestive system, 1-day adult    91 digestive system, 4-day adult    87 digestive system, 20-day adult    62 fat body, larvae L3 wandering    53 fat body, white prepupae    120 fat body, pupae P8    74 carcass, larvae L3 wandering    87 carcass, 1-day adult    51 carcass, 4-day adult    64 carcass, 20-day adult    44 ovary, virgin 4-day female    150 ovary, mated 4-day female    121 testis, mated 4-day male    405 accessory gland, mated 4-day male    102 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    105 central nervous system, larvae L3    98 central nervous system, pupae P8    74 head, virgin 1-day female    56 head, virgin 4-day female    53 head, virgin 20-day female    45 head, mated 1-day female    48 head, mated 4-day female    66 head, mated 20-day female    45 head, mated 1-day male    59 head, mated 4-day male    114 head, mated 20-day male    148 salivary gland, larvae L3 wandering    25 salivary gland, white prepupae    44 digestive system, larvae L3 wandering    87 digestive system, 1-day adult    91 digestive system, 4-day adult    87 digestive system, 20-day adult    62 fat body, larvae L3 wandering    53 fat body, white prepupae    120 fat body, pupae P8    74 carcass, larvae L3 wandering    87 carcass, 1-day adult    51 carcass, 4-day adult    64 carcass, 20-day adult    44 ovary, virgin 4-day female    150 ovary, mated 4-day female    121 testis, mated 4-day male    405 accessory gland, mated 4-day male    102 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (105) central nervous system, larvae L3  (98) central nervous system, pupae P8  (74) head, virgin 1-day female  (56) head, virgin 4-day female  (53) head, virgin 20-day female  (45) head, mated 1-day female  (48) head, mated 4-day female  (66) head, mated 20-day female  (45) head, mated 1-day male  (59) head, mated 4-day male  (114) head, mated 20-day male  (148) salivary gland, larvae L3 wandering    25 salivary gland, white prepupae  (44) digestive system, larvae L3 wandering  (87) digestive system, 1-day adult  (91) digestive system, 4-day adult  (87) digestive system, 20-day adult  (62) fat body, larvae L3 wandering  (53) fat body, white prepupae  (120) fat body, pupae P8  (74) carcass, larvae L3 wandering  (87) carcass, 1-day adult  (51) carcass, 4-day adult  (64) carcass, 20-day adult  (44) ovary, virgin 4-day female  (150) ovary, mated 4-day female  (121) testis, mated 4-day male  (405) accessory gland, mated 4-day male  (102) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  105 central nervous system, larvae L3    98 central nervous system, pupae P8    74 head, virgin 1-day female    56 head, virgin 4-day female    53 head, virgin 20-day female    45 head, mated 1-day female    48 head, mated 4-day female    66 head, mated 20-day female    45 head, mated 1-day male    59 head, mated 4-day male  114 head, mated 20-day male  (148) salivary gland, larvae L3 wandering    25 salivary gland, white prepupae    44 digestive system, larvae L3 wandering    87 digestive system, 1-day adult    91 digestive system, 4-day adult    87 digestive system, 20-day adult    62 fat body, larvae L3 wandering    53 fat body, white prepupae  120 fat body, pupae P8    74 carcass, larvae L3 wandering    87 carcass, 1-day adult    51 carcass, 4-day adult    64 carcass, 20-day adult    44 ovary, virgin 4-day female  (150) ovary, mated 4-day female  121 testis, mated 4-day male  (405) accessory gland, mated 4-day male  102 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    105 central nervous system, larvae L3    98 central nervous system, pupae P8    74 head, virgin 1-day female    56 head, virgin 4-day female    53 head, virgin 20-day female    45 head, mated 1-day female    48 head, mated 4-day female    66 head, mated 20-day female    45 head, mated 1-day male    59 head, mated 4-day male    114 head, mated 20-day male    148 salivary gland, larvae L3 wandering    25 salivary gland, white prepupae    44 digestive system, larvae L3 wandering    87 digestive system, 1-day adult    91 digestive system, 4-day adult    87 digestive system, 20-day adult    62 fat body, larvae L3 wandering    53 fat body, white prepupae    120 fat body, pupae P8    74 carcass, larvae L3 wandering    87 carcass, 1-day adult    51 carcass, 4-day adult    64 carcass, 20-day adult    44 ovary, virgin 4-day female    150 ovary, mated 4-day female    121 testis, mated 4-day male    405 accessory gland, mated 4-day male    102 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    111 embryo 02-04hr    163 embryo 04-06hr    187 embryo 06-08hr    119 embryo 08-10hr    135 embryo 10-12hr    160 embryo 12-14hr    105 embryo 14-16hr    88 embryo 16-18hr    77 embryo 18-20hr    47 embryo 20-22hr    36 embryo 22-24hr    47 larva L1    54 larva L2    74 larva L3 12hr old    61 larva L3 puffstage 1-2    69 larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    106 white prepupae new    110 white prepupae 12hr    80 white prepupae 24hr    93 pupae 2d postWPP    79 pupae 3d postWPP    57 pupae 4d postWPP    46 adult male 01day    53 adult male 05day    68 adult male 30day    69 adult female 01day    57 adult female 05day    72 adult female 30day    73 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (111) embryo 02-04hr  (163) embryo 04-06hr  (187) embryo 06-08hr  (119) embryo 08-10hr  (135) embryo 10-12hr  (160) embryo 12-14hr  (105) embryo 14-16hr  (88) embryo 16-18hr  (77) embryo 18-20hr  (47) embryo 20-22hr  (36) embryo 22-24hr  (47) larva L1  (54) larva L2  (74) larva L3 12hr old  (61) larva L3 puffstage 1-2  (69) larva L3 puffstage 3-6  (73) larva L3 puffstage 7-9  (106) white prepupae new  (110) white prepupae 12hr  (80) white prepupae 24hr  (93) pupae 2d postWPP  (79) pupae 3d postWPP  (57) pupae 4d postWPP  (46) adult male 01day  (53) adult male 05day  (68) adult male 30day  (69) adult female 01day  (57) adult female 05day  (72) adult female 30day  (73) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (111) embryo 02-04hr  (163) embryo 04-06hr  (187) embryo 06-08hr  (119) embryo 08-10hr  (135) embryo 10-12hr  (160) embryo 12-14hr  105 embryo 14-16hr    88 embryo 16-18hr    77 embryo 18-20hr    47 embryo 20-22hr    36 embryo 22-24hr    47 larva L1    54 larva L2    74 larva L3 12hr old    61 larva L3 puffstage 1-2    69 larva L3 puffstage 3-6    73 larva L3 puffstage 7-9  106 white prepupae new  (110) white prepupae 12hr    80 white prepupae 24hr    93 pupae 2d postWPP    79 pupae 3d postWPP    57 pupae 4d postWPP    46 adult male 01day    53 adult male 05day    68 adult male 30day    69 adult female 01day    57 adult female 05day    72 adult female 30day    73 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    111 embryo 02-04hr    163 embryo 04-06hr    187 embryo 06-08hr    119 embryo 08-10hr    135 embryo 10-12hr    160 embryo 12-14hr    105 embryo 14-16hr    88 embryo 16-18hr    77 embryo 18-20hr    47 embryo 20-22hr    36 embryo 22-24hr    47 larva L1    54 larva L2    74 larva L3 12hr old    61 larva L3 puffstage 1-2    69 larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    106 white prepupae new    110 white prepupae 12hr    80 white prepupae 24hr    93 pupae 2d postWPP    79 pupae 3d postWPP    57 pupae 4d postWPP    46 adult male 01day    53 adult male 05day    68 adult male 30day    69 adult female 01day    57 adult female 05day    72 adult female 30day    73 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    111 embryo 02-04hr    163 embryo 04-06hr    187 embryo 06-08hr    119 embryo 08-10hr    135 embryo 10-12hr    160 embryo 12-14hr    105 embryo 14-16hr    88 embryo 16-18hr    77 embryo 18-20hr    47 embryo 20-22hr    36 embryo 22-24hr    47 larva L1    54 larva L2    74 larva L3 12hr old    61 larva L3 puffstage 1-2    69 larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    106 white prepupae new    110 white prepupae 12hr    80 white prepupae 24hr    93 pupae 2d postWPP    79 pupae 3d postWPP    57 pupae 4d postWPP    46 adult male 01day    53 adult male 05day    68 adult male 30day    69 adult female 01day    57 adult female 05day    72 adult female 30day    73 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (111) embryo 02-04hr  (163) embryo 04-06hr  (187) embryo 06-08hr  (119) embryo 08-10hr  (135) embryo 10-12hr  (160) embryo 12-14hr  (105) embryo 14-16hr  (88) embryo 16-18hr  (77) embryo 18-20hr  (47) embryo 20-22hr  (36) embryo 22-24hr  (47) larva L1  (54) larva L2  (74) larva L3 12hr old  (61) larva L3 puffstage 1-2  (69) larva L3 puffstage 3-6  (73) larva L3 puffstage 7-9  (106) white prepupae new  (110) white prepupae 12hr  (80) white prepupae 24hr  (93) pupae 2d postWPP  (79) pupae 3d postWPP  (57) pupae 4d postWPP  (46) adult male 01day  (53) adult male 05day  (68) adult male 30day  (69) adult female 01day  (57) adult female 05day  (72) adult female 30day  (73) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  111 embryo 02-04hr  (163) embryo 04-06hr  (187) embryo 06-08hr  119 embryo 08-10hr  135 embryo 10-12hr  (160) embryo 12-14hr  105 embryo 14-16hr    88 embryo 16-18hr    77 embryo 18-20hr    47 embryo 20-22hr    36 embryo 22-24hr    47 larva L1    54 larva L2    74 larva L3 12hr old    61 larva L3 puffstage 1-2    69 larva L3 puffstage 3-6    73 larva L3 puffstage 7-9  106 white prepupae new  110 white prepupae 12hr    80 white prepupae 24hr    93 pupae 2d postWPP    79 pupae 3d postWPP    57 pupae 4d postWPP    46 adult male 01day    53 adult male 05day    68 adult male 30day    69 adult female 01day    57 adult female 05day    72 adult female 30day    73 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    111 embryo 02-04hr    163 embryo 04-06hr    187 embryo 06-08hr    119 embryo 08-10hr    135 embryo 10-12hr    160 embryo 12-14hr    105 embryo 14-16hr    88 embryo 16-18hr    77 embryo 18-20hr    47 embryo 20-22hr    36 embryo 22-24hr    47 larva L1    54 larva L2    74 larva L3 12hr old    61 larva L3 puffstage 1-2    69 larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    106 white prepupae new    110 white prepupae 12hr    80 white prepupae 24hr    93 pupae 2d postWPP    79 pupae 3d postWPP    57 pupae 4d postWPP    46 adult male 01day    53 adult male 05day    68 adult male 30day    69 adult female 01day    57 adult female 05day    72 adult female 30day    73 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    406 Schneider line 2 Sg4    201 embryonic 1182-4H    123 embryonic GM2    89 embryonic Kc167    182 embryonic S1    139 embryonic S3    142 leg disc CME L1    153 wing disc CME-W2    311 wing disc ML-DmD8    122 wing disc ML-DmD9    153 wing disc ML-DmD16-c3    115 wing disc ML-DmD21    391 wing disc ML-DmD32    189 haltere disc ML-DmD17-c3    136 eye-antennal disc ML-DmD11    138 antennal disc ML-DmD20-c5    212 mixed discs ML-DmD4-c1    177 CNS ML-DmBG1-c1    290 CNS ML-DmBG2-c2    220 tumorous blood cells mbn2    187 ovary fGS/OSS    91 ovary OSC    274 ovary OSS    75 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (406) Schneider line 2 Sg4  (201) embryonic 1182-4H  (123) embryonic GM2  (89) embryonic Kc167  (182) embryonic S1  (139) embryonic S3  (142) leg disc CME L1  (153) wing disc CME-W2  (311) wing disc ML-DmD8  (122) wing disc ML-DmD9  (153) wing disc ML-DmD16-c3  (115) wing disc ML-DmD21  (391) wing disc ML-DmD32  (189) haltere disc ML-DmD17-c3  (136) eye-antennal disc ML-DmD11  (138) antennal disc ML-DmD20-c5  (212) mixed discs ML-DmD4-c1  (177) CNS ML-DmBG1-c1  (290) CNS ML-DmBG2-c2  (220) tumorous blood cells mbn2  (187) ovary fGS/OSS  (91) ovary OSC  (274) ovary OSS  (75) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (406) Schneider line 2 Sg4  (201) embryonic 1182-4H  (123) embryonic GM2    89 embryonic Kc167  (182) embryonic S1  (139) embryonic S3  (142) leg disc CME L1  (153) wing disc CME-W2  (311) wing disc ML-DmD8  (122) wing disc ML-DmD9  (153) wing disc ML-DmD16-c3  (115) wing disc ML-DmD21  (391) wing disc ML-DmD32  (189) haltere disc ML-DmD17-c3  (136) eye-antennal disc ML-DmD11  (138) antennal disc ML-DmD20-c5  (212) mixed discs ML-DmD4-c1  (177) CNS ML-DmBG1-c1  (290) CNS ML-DmBG2-c2  (220) tumorous blood cells mbn2  (187) ovary fGS/OSS    91 ovary OSC  (274) ovary OSS    75 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    406 Schneider line 2 Sg4    201 embryonic 1182-4H    123 embryonic GM2    89 embryonic Kc167    182 embryonic S1    139 embryonic S3    142 leg disc CME L1    153 wing disc CME-W2    311 wing disc ML-DmD8    122 wing disc ML-DmD9    153 wing disc ML-DmD16-c3    115 wing disc ML-DmD21    391 wing disc ML-DmD32    189 haltere disc ML-DmD17-c3    136 eye-antennal disc ML-DmD11    138 antennal disc ML-DmD20-c5    212 mixed discs ML-DmD4-c1    177 CNS ML-DmBG1-c1    290 CNS ML-DmBG2-c2    220 tumorous blood cells mbn2    187 ovary fGS/OSS    91 ovary OSC    274 ovary OSS    75 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    406 Schneider line 2 Sg4    201 embryonic 1182-4H    123 embryonic GM2    89 embryonic Kc167    182 embryonic S1    139 embryonic S3    142 leg disc CME L1    153 wing disc CME-W2    311 wing disc ML-DmD8    122 wing disc ML-DmD9    153 wing disc ML-DmD16-c3    115 wing disc ML-DmD21    391 wing disc ML-DmD32    189 haltere disc ML-DmD17-c3    136 eye-antennal disc ML-DmD11    138 antennal disc ML-DmD20-c5    212 mixed discs ML-DmD4-c1    177 CNS ML-DmBG1-c1    290 CNS ML-DmBG2-c2    220 tumorous blood cells mbn2    187 ovary fGS/OSS    91 ovary OSC    274 ovary OSS    75 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (406) Schneider line 2 Sg4  (201) embryonic 1182-4H  (123) embryonic GM2  (89) embryonic Kc167  (182) embryonic S1  (139) embryonic S3  (142) leg disc CME L1  (153) wing disc CME-W2  (311) wing disc ML-DmD8  (122) wing disc ML-DmD9  (153) wing disc ML-DmD16-c3  (115) wing disc ML-DmD21  (391) wing disc ML-DmD32  (189) haltere disc ML-DmD17-c3  (136) eye-antennal disc ML-DmD11  (138) antennal disc ML-DmD20-c5  (212) mixed discs ML-DmD4-c1  (177) CNS ML-DmBG1-c1  (290) CNS ML-DmBG2-c2  (220) tumorous blood cells mbn2  (187) ovary fGS/OSS  (91) ovary OSC  (274) ovary OSS  (75) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (406) Schneider line 2 Sg4  (201) embryonic 1182-4H  123 embryonic GM2    89 embryonic Kc167  (182) embryonic S1  139 embryonic S3  142 leg disc CME L1  (153) wing disc CME-W2  (311) wing disc ML-DmD8  122 wing disc ML-DmD9  (153) wing disc ML-DmD16-c3  115 wing disc ML-DmD21  (391) wing disc ML-DmD32  (189) haltere disc ML-DmD17-c3  136 eye-antennal disc ML-DmD11  138 antennal disc ML-DmD20-c5  (212) mixed discs ML-DmD4-c1  (177) CNS ML-DmBG1-c1  (290) CNS ML-DmBG2-c2  (220) tumorous blood cells mbn2  (187) ovary fGS/OSS    91 ovary OSC  (274) ovary OSS    75 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    406 Schneider line 2 Sg4    201 embryonic 1182-4H    123 embryonic GM2    89 embryonic Kc167    182 embryonic S1    139 embryonic S3    142 leg disc CME L1    153 wing disc CME-W2    311 wing disc ML-DmD8    122 wing disc ML-DmD9    153 wing disc ML-DmD16-c3    115 wing disc ML-DmD21    391 wing disc ML-DmD32    189 haltere disc ML-DmD17-c3    136 eye-antennal disc ML-DmD11    138 antennal disc ML-DmD20-c5    212 mixed discs ML-DmD4-c1    177 CNS ML-DmBG1-c1    290 CNS ML-DmBG2-c2    220 tumorous blood cells mbn2    187 ovary fGS/OSS    91 ovary OSC    274 ovary OSS    75 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    37 cold shock, 4-day adult    28 heat shock, 4-day adult    70 Cadmium 50 mM 6 hrs, larvae L3    85 Cadmium 50 mM 12 hrs, larvae L3    106 Cadmium 50 mM 48 hrs, 4-day adult    81 Cadmium 100 mM 48 hrs, 4-day adult    98 Copper 0.5 mM 12 hrs, larvae L3    34 Copper 15 mM 48 hrs, 4-day adult    186 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    99 Ethanol 2.5% 3 hrs, larvae L3    58 Ethanol 5% 3 hrs, larvae L3    83 Ethanol 10% 3 hrs, larvae L3    50 Caffeine 1.5 mg/ml 4 hrs, larvae L3    68 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    85 Caffeine 25 mg/ml 48 hrs, 4-day adult    55 Paraquat 5 mM 48 hrs, 4-day adult    92 Paraquat 10 mM 48 hrs, 4-day adult    75 Rotenone 2 μg 12 hrs, larvae L3    67 Rotenone 8 μg 12 hrs, larvae L3    47 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (37) cold shock, 4-day adult  (28) heat shock, 4-day adult  (70) Cadmium 50 mM 6 hrs, larvae L3  (85) Cadmium 50 mM 12 hrs, larvae L3  (106) Cadmium 50 mM 48 hrs, 4-day adult  (81) Cadmium 100 mM 48 hrs, 4-day adult  (98) Copper 0.5 mM 12 hrs, larvae L3  (34) Copper 15 mM 48 hrs, 4-day adult  (186) Zinc 5 mM 12 hrs, larvae L3  (36) Zinc 4.5 mM 48 hrs, 4-day adult  (99) Ethanol 2.5% 3 hrs, larvae L3  (58) Ethanol 5% 3 hrs, larvae L3  (83) Ethanol 10% 3 hrs, larvae L3  (50) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (68) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (85) Caffeine 25 mg/ml 48 hrs, 4-day adult  (55) Paraquat 5 mM 48 hrs, 4-day adult  (92) Paraquat 10 mM 48 hrs, 4-day adult  (75) Rotenone 2 μg 12 hrs, larvae L3  (67) Rotenone 8 μg 12 hrs, larvae L3  (47) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    37 cold shock, 4-day adult    28 heat shock, 4-day adult    70 Cadmium 50 mM 6 hrs, larvae L3    85 Cadmium 50 mM 12 hrs, larvae L3  106 Cadmium 50 mM 48 hrs, 4-day adult    81 Cadmium 100 mM 48 hrs, 4-day adult    98 Copper 0.5 mM 12 hrs, larvae L3    34 Copper 15 mM 48 hrs, 4-day adult  (186) Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    99 Ethanol 2.5% 3 hrs, larvae L3    58 Ethanol 5% 3 hrs, larvae L3    83 Ethanol 10% 3 hrs, larvae L3    50 Caffeine 1.5 mg/ml 4 hrs, larvae L3    68 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    85 Caffeine 25 mg/ml 48 hrs, 4-day adult    55 Paraquat 5 mM 48 hrs, 4-day adult    92 Paraquat 10 mM 48 hrs, 4-day adult    75 Rotenone 2 μg 12 hrs, larvae L3    67 Rotenone 8 μg 12 hrs, larvae L3    47 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    37 cold shock, 4-day adult    28 heat shock, 4-day adult    70 Cadmium 50 mM 6 hrs, larvae L3    85 Cadmium 50 mM 12 hrs, larvae L3    106 Cadmium 50 mM 48 hrs, 4-day adult    81 Cadmium 100 mM 48 hrs, 4-day adult    98 Copper 0.5 mM 12 hrs, larvae L3    34 Copper 15 mM 48 hrs, 4-day adult    186 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    99 Ethanol 2.5% 3 hrs, larvae L3    58 Ethanol 5% 3 hrs, larvae L3    83 Ethanol 10% 3 hrs, larvae L3    50 Caffeine 1.5 mg/ml 4 hrs, larvae L3    68 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    85 Caffeine 25 mg/ml 48 hrs, 4-day adult    55 Paraquat 5 mM 48 hrs, 4-day adult    92 Paraquat 10 mM 48 hrs, 4-day adult    75 Rotenone 2 μg 12 hrs, larvae L3    67 Rotenone 8 μg 12 hrs, larvae L3    47 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    37 cold shock, 4-day adult    28 heat shock, 4-day adult    70 Cadmium 50 mM 6 hrs, larvae L3    85 Cadmium 50 mM 12 hrs, larvae L3    106 Cadmium 50 mM 48 hrs, 4-day adult    81 Cadmium 100 mM 48 hrs, 4-day adult    98 Copper 0.5 mM 12 hrs, larvae L3    34 Copper 15 mM 48 hrs, 4-day adult    186 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    99 Ethanol 2.5% 3 hrs, larvae L3    58 Ethanol 5% 3 hrs, larvae L3    83 Ethanol 10% 3 hrs, larvae L3    50 Caffeine 1.5 mg/ml 4 hrs, larvae L3    68 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    85 Caffeine 25 mg/ml 48 hrs, 4-day adult    55 Paraquat 5 mM 48 hrs, 4-day adult    92 Paraquat 10 mM 48 hrs, 4-day adult    75 Rotenone 2 μg 12 hrs, larvae L3    67 Rotenone 8 μg 12 hrs, larvae L3    47 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (37) cold shock, 4-day adult  28 heat shock, 4-day adult  (70) Cadmium 50 mM 6 hrs, larvae L3  (85) Cadmium 50 mM 12 hrs, larvae L3  (106) Cadmium 50 mM 48 hrs, 4-day adult  (81) Cadmium 100 mM 48 hrs, 4-day adult  (98) Copper 0.5 mM 12 hrs, larvae L3  (34) Copper 15 mM 48 hrs, 4-day adult  (186) Zinc 5 mM 12 hrs, larvae L3  (36) Zinc 4.5 mM 48 hrs, 4-day adult  (99) Ethanol 2.5% 3 hrs, larvae L3  (58) Ethanol 5% 3 hrs, larvae L3  (83) Ethanol 10% 3 hrs, larvae L3  (50) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (68) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (85) Caffeine 25 mg/ml 48 hrs, 4-day adult  (55) Paraquat 5 mM 48 hrs, 4-day adult  (92) Paraquat 10 mM 48 hrs, 4-day adult  (75) Rotenone 2 μg 12 hrs, larvae L3  (67) Rotenone 8 μg 12 hrs, larvae L3  (47) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    37 cold shock, 4-day adult    28 heat shock, 4-day adult    70 Cadmium 50 mM 6 hrs, larvae L3    85 Cadmium 50 mM 12 hrs, larvae L3  106 Cadmium 50 mM 48 hrs, 4-day adult    81 Cadmium 100 mM 48 hrs, 4-day adult    98 Copper 0.5 mM 12 hrs, larvae L3    34 Copper 15 mM 48 hrs, 4-day adult  (186) Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    99 Ethanol 2.5% 3 hrs, larvae L3    58 Ethanol 5% 3 hrs, larvae L3    83 Ethanol 10% 3 hrs, larvae L3    50 Caffeine 1.5 mg/ml 4 hrs, larvae L3    68 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    85 Caffeine 25 mg/ml 48 hrs, 4-day adult    55 Paraquat 5 mM 48 hrs, 4-day adult    92 Paraquat 10 mM 48 hrs, 4-day adult    75 Rotenone 2 μg 12 hrs, larvae L3    67 Rotenone 8 μg 12 hrs, larvae L3    47 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    37 cold shock, 4-day adult    28 heat shock, 4-day adult    70 Cadmium 50 mM 6 hrs, larvae L3    85 Cadmium 50 mM 12 hrs, larvae L3    106 Cadmium 50 mM 48 hrs, 4-day adult    81 Cadmium 100 mM 48 hrs, 4-day adult    98 Copper 0.5 mM 12 hrs, larvae L3    34 Copper 15 mM 48 hrs, 4-day adult    186 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    99 Ethanol 2.5% 3 hrs, larvae L3    58 Ethanol 5% 3 hrs, larvae L3    83 Ethanol 10% 3 hrs, larvae L3    50 Caffeine 1.5 mg/ml 4 hrs, larvae L3    68 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    85 Caffeine 25 mg/ml 48 hrs, 4-day adult    55 Paraquat 5 mM 48 hrs, 4-day adult    92 Paraquat 10 mM 48 hrs, 4-day adult    75 Rotenone 2 μg 12 hrs, larvae L3    67 Rotenone 8 μg 12 hrs, larvae L3    47 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_30 mE1_20_mRNA_expression_cluster_02
External Data & Images
Linkouts	BDGP expression data • LD33828 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031670 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3887-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG3887 Class Mutagen Stocks Known lesion CG3887DG29511 0 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG3887 Class Mutagen Stocks Known lesion CG3887KK101800 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG3887GD901 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes CG3887NIG.3887R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel7022 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD901} NA P{KK101800} NA P{NIG.3887R} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{wHy}CG3887DG29511 NA
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
	There is no information supporting a cellular component term for this gene. (Based on a review of available data before: 2006)
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
selenium binding inferred from electronic annotation with InterPro:IPR011893, InterPro:IPR019389 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
cell redox homeostasis inferred from electronic annotation with InterPro:IPR011893, InterPro:IPR019389 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG3887 - AnxB10 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) CG3887 - Aos1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - CG13887 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - CG1561 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - CG15643 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - CG15717 experimental knowledge based (Guruharsha et al., 2011) CG3887 - CG1607 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - CG1688 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - CG2064 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - CG2065 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - CG2070 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) CG3887 - CG2789 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - CG31522 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - CG3795 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - CG4169 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - CG7115 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - CG7675 experimental knowledge based (Guruharsha et al., 2011) CG3887 - CG8311 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - CG8314 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - CG8525 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - Chc anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - Mpcp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - Oamb anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - Or49b anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - P32 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - Pp2A-29B anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - Pp2B-14D anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - Prosα4 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - Prosα5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - Prosα7 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - Prosβ1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - Prosβ7 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - R anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - Rab5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - Torsin anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) CG3887 - bbc anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - ine anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - l(2)37Cc anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG3887 - poe anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG3887 allele Gene References
External Data
Linkouts	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0031670 DroID - A comprehensive database of gene and protein interactions. • FBgn0031670 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33725
Orthologs
OrthoDB Orthologs (40) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6GF41M Dipteran inclusive ortholog search EOG6PZJGT Insect inclusive ortholog search EOG61VJ0P Arthropod inclusive ortholog search EOG6DNCN3 Metazoa inclusive ortholog search EOG6N3CHH
Orthologs in Drosophila Species (EOG6GF41M)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG3887     Drosophila sechellia   Dsec\GM18515 Y   Drosophila erecta   Dere\GG25041 Y   Drosophila yakuba   Dyak\GE11298 Y   Drosophila ananassae   Dana\GF15710 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA17753 Y   Drosophila persimilis   Dper\GL26542 Y   Drosophila willistoni   Dwil\GK24855 Y   Drosophila virilis   Dvir\GJ17222 Y   Drosophila mojavensis   Dmoj\GI16976 Y   Drosophila grimshawi   Dgri\GH11481 Y
Orthologs in non-Drosophila Dipterans (EOG6PZJGT)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL007944   Anopheles gambiae Malaria mosquito  Agam\AGAP009202   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ802356
Orthologs in non-Dipteran Insects (EOG61VJ0P)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC550992   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG003816   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH17606   Atta cephalotes Leafcutter ant  Acep\ACEP21457   Camponotus floridanus Florida carpenter ant  Cflo\CFLO20027   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL19526   Linepithema humile Argentine ant  Lhum\LH16540   Pogonomyrmex barbatus Red harvester ant  Pbar\PB24749   Acyrthosiphon pisum Pea aphid  Apim\ACYPI003983   Bombyx mori Silkmoth  Bmor\BGIBMGA014041   Pediculus humanus Human body louse  Phum\PHUM136050   Tribolium castaneum Red flour beetle  Tcas\TC013470
Orthologs in non-Insect Arthropods (EOG6DNCN3)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_328140   Ixodes scapularis Deer tick  Isca\ISCW006093
Orthologs in non-Arthropod Metazoa (EOG6N3CHH)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\F28H7.4   Caenorhabditis elegans Nematode  Cele\C35C5.3   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_013113gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_028410gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_000885gn   Danio rerio Zebrafish  Drer\selt1b   Danio rerio Zebrafish  Drer\selt1a   Danio rerio Zebrafish  Drer\selt2   Xenopus tropicalis Western clawed frog  Xtro\selt   Mus musculus House mouse  Mmus\Selt   Rattus norvegicus Norway rat  Rnor\Selt   Homo sapiens Human  Hsap\SELT
Human Orthologs (1)
Gene OMIM HGNC Hsap\SELT
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila sechellia Dsec\GM18515 Drosophila erecta Dere\GG25041 Drosophila yakuba Dyak\GE11298 Drosophila ananassae Dana\GF15710 Drosophila pseudoobscura pseudoobscura Dpse\GA17753 Drosophila persimilis Dper\GL26542 Drosophila willistoni Dwil\GK24855 Drosophila virilis Dvir\GJ17222 Drosophila mojavensis Dmoj\GI16976 Drosophila grimshawi Dgri\GH11481
Stocks & Reagents
Stocks Listed in FlyBase ( 1 )
VDRC	v105430 P{KK101800}VIE-260B
Genomic Clones ( 2 )
	BACR13M11 BACR40I04 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 169 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD33828
Other clones	DPiM_LD33828
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT19448 AT23207 AT27201 GH08908 GH16294 GH17419 GH19175 GH20264 GM09236 GM16233 LD12443 LD39890 LD40738 LD46542 RE08303 RE11266 RE22731 RE27135 RE27147 RE32544 RE34783 RE34883 RE36082 RE45568 RE47282 RE48683 RE51483 RE51852 RE52495 RE59345 RE72550 RE74765 RH08078 RH22312 RH26643 RH27536 RH27995 SD13278
Other clones	CK01854 EK057449 EK060111 EK068452 EK093045 EK146418 EK155964 EK205529 EK245233 EK255853 EK275706 EN09349 EN12335 EN13235 EN15062 FGH111C09 FGM237D07 FGX002E01 FGX002E03 RP003016474 RP003023554 RP003028012 RP003060033 RP003068984 RP003074560 RP003077748 RP003084198 RP003086317 RP003098524 RP003108671 RP003109464 RP003130878 RP003136315 RP003147021 RP003149266 RP003163885 RP003183433 RP003185506 RP003192855 RP003192914 RP003211281 RP003221302 RP003233507 RP003238868 RP003241552 RP003242861 RP003256232 RP003256371 RP003259880 RP003261476 RP003265038 RP003265165 RP003273716 RP003274966 RP003279774 RP003287095 RP003287625 RP003295001 RP003300338 RP003301855 RP003305803 RP003308955 RP003308973 RP003311514 RP003313943 RP003319346 RP003321897 RP003323394 RP003328280 RP003328941 RP003330393 RP003332427 RP003332837 RP003342246 RP003346854 RP003349664 RP003356887 RP003357962 RP003358248 RP003366040 RP003389757 RP003390415 RP003391626 RP003416564 RP003418166 RP003425633 RP003437261 RP003440522 RP003441786 RP003451689 RP003467744 RP003467839 RP003472036 RP003515481 RP003516754 RP003520707 RP003529727 RP003537475 RP003538066 RP003544169 RP003552695 RP003553785 RP003558199 RP003561177 RP003562889 RP003577077 RP003578552 RP003584750 RP003585752 RP003593269 RP003597287 RP003602137 RP003605020 RP003608934 RP003613783 RP003615221 RP003627402 RP003638701 RP003640141 RP003645312 RP003648729 RP003649594 RP003652352 RP003652715 RP003662513 RP003663749 RP003664249 RP003672782 RP003674267
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0031670 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33725
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_135053 NM_001273140 NM_001273141 RefSeq (Proteins) • NP_608897 NP_001260069 NP_001260070 DDBJ / EMBL / GenBank • AA979327 AAF52202 AAL28957 AGB92605 AGB92606 AW943203 AY061409 Entrez Gene - A searchable database of RefSeq genes. • 33725 UniProtKB/Swiss-Prot • Q9VMV6
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Selenoprotein, Rdx type (IPR011893) Selenoprotein T (IPR019389) Thioredoxin-like fold (IPR012336) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD33828
Linkouts
	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0031670 DroID - A comprehensive database of gene and protein interactions. • FBgn0031670 DRSC - Results from RNAi screens. • FBgn0031670 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031670 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3887-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0031670 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33725 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33725 modMine - Data generated by the modENCODE project. • FBgn0031670
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG3887 (Keleman et al., 2009.8.5, Cammarato et al., 2011, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
References ( 15 )
Supplementary material	Cammarato et al., 2011, PLoS ONE 6(4): Table S1. Proteins & Peptides. [FBrf0214682] Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] Guruharsha et al., 2011, Cell 147(3): Table S3. [FBrf0218395] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Dietzl et al., 2007, Nature 448(7150): Supplementary Table 1. [FBrf0202579]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]