FlyBase Gene Report: Dmel\Oscillin

INTRAMOLECULAR OXIDOREDUCTASES INTERCONVERTING ALDOSES AND KETOSES -: Intramolecular oxidoreductases interconverting aldoses and ketoses catalyze the oxidation of one part of an aldose or ketose molecule and the concurrent reduction of another part of the same molecule. (Adapted from FBrf0238665.)

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the GBrowse view of Dmel\Oscillin or the JBrowse view of Dmel\Oscillin for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Comments on Gene Model

Annotated transcripts do not represent all supported alternative splices within 5' UTR.

Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.

Gene model reviewed during 5.45

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

Oscillin-RA

FBtr0079101

NM_135094

1216

273

Oscillin-RB

FBtr0079102

NM_164649

1529

273

Oscillin-RC

FBtr0307060

NM_001258965

1206

273

Oscillin-RD

FBtr0307061

NM_001258966

1156

272

Oscillin-RE

FBtr0307062

NM_001258967

1586

266

Oscillin-RF

FBtr0307063

NM_001258968

1388

273

Oscillin-RG

FBtr0307064

NM_001258969

1413

272

Oscillin-RH

FBtr0331675

NM_001273172

1299

273

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank

Oscillin-PA

FBpp0078734

30.8

273

6.18

NP_608938

AAF52263

Oscillin-PB

FBpp0078735

30.8

273

6.18

NP_723092

AAN10546

Oscillin-PC

FBpp0297903

30.8

273

6.18

NP_001245894

AFH03568

Oscillin-PD

FBpp0297904

30.8

272

6.59

NP_001245895

AFH03569

Oscillin-PE

FBpp0297905

30.0

266

6.51

NP_001245896

AFH03570

Oscillin-PF

FBpp0297906

30.8

273

6.18

NP_001245897

AFH03571

Oscillin-PG

FBpp0297907

30.8

272

6.59

NP_001245898

AFH03572

Oscillin-PH

FBpp0304065

30.8

273

6.18

NP_001260101

AGB92637

Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

273 aa isoforms: Oscillin-PA, Oscillin-PB, Oscillin-PC, Oscillin-PF, Oscillin-PH

272 aa isoforms: Oscillin-PD, Oscillin-PG

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Subunit Structure (UniProtKB)

Homohexamer.

(UniProt, Q9VMP9)

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Oscillin using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Linkouts

Gene Ontology (10 terms)

Molecular Function (2 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

glucosamine-6-phosphate deaminase activity

inferred from sequence or structural similarity with UniProtKB:P46926

(assigned by UniProt )

(UniProt Curators, 2002-)

inferred from biological aspect of ancestor with PANTHER:PTN000138938

(assigned by GO_Central )

(Gaudet et al., 2011)

inferred from sequence or structural similarity with UniProtKB:P0A759

(Nakamura et al., 2000)

identical protein binding

inferred from biological aspect of ancestor with PANTHER:PTN000138938

(assigned by GO_Central )

(Gaudet et al., 2011)

Biological Process (7 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (7 terms)

CV Term

Evidence

References

carbohydrate metabolic process

inferred from electronic annotation with InterPro:IPR006148

(assigned by InterPro )

(FlyBase Curators et al., 2004-)

generation of precursor metabolites and energy

inferred from sequence or structural similarity with UniProtKB:P46926

(assigned by UniProt )

(UniProt Curators, 2002-)

glucosamine catabolic process

inferred from sequence or structural similarity with UniProtKB:P46926

(assigned by UniProt )

(UniProt Curators, 2002-)

inferred from biological aspect of ancestor with PANTHER:PTN000138938

(assigned by GO_Central )

(Gaudet et al., 2011)

N-acetylglucosamine catabolic process

inferred from biological aspect of ancestor with PANTHER:PTN000138938

(assigned by GO_Central )

(Gaudet et al., 2011)

N-acetylglucosamine metabolic process

inferred from sequence or structural similarity with UniProtKB:P0A759

(Nakamura et al., 2000)

N-acetylneuraminate catabolic process

inferred from biological aspect of ancestor with PANTHER:PTN000138938

(assigned by GO_Central )

(Gaudet et al., 2011)

UDP-N-acetylglucosamine biosynthetic process

inferred from biological aspect of ancestor with PANTHER:PTN000138938

(assigned by GO_Central )

(Gaudet et al., 2011)

Cellular Component (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

cytoplasm

inferred from biological aspect of ancestor with PANTHER:PTN000138938

(assigned by GO_Central )

(Gaudet et al., 2011)

inferred from sequence or structural similarity with UniProtKB:O88958

(assigned by UniProt )

(UniProt Curators, 2002-)

Expression Data

Expression Summary Ribbons

Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.

For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 4 -- 6

yolk nucleus

(Fisher et al., 2012)

embryonic stage 7 -- 8

anterior endoderm anlage

(Fisher et al., 2012)

head mesoderm

(Fisher et al., 2012)

yolk nucleus

(Fisher et al., 2012)

embryonic stage 9 -- 10

anterior endoderm

(Fisher et al., 2012)

head mesoderm

(Fisher et al., 2012)

yolk nucleus

(Fisher et al., 2012)

embryonic stage 11 -- 12

yolk nucleus

(Fisher et al., 2012)

embryonic stage 13 -- 16

yolk nucleus

(Fisher et al., 2012)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

adult head

• membrane

(Aradska et al., 2015)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\Oscillin in GBrowse 2

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\Oscillin

View exonic expression by tissue for Dmel\Oscillin

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0031717

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0031717

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG6957-RA

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG6957

Flygut - An atlas of the Drosophila adult midgut

FBgn0031717

Images

FlyExpress - Embryonic expression images (BDGP data)

Show all FlyExpress processed images for Dmel\Oscillin

Stages(s) 4-6
Stages(s) 7-8
Stages(s) 9-10
Stages(s) 11-12
Stages(s) 13-16

FlyBase Wiki

Image Based Resources

Alleles, Insertions, and Transgenic Constructs

Classical and Insertion Alleles ( 3 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 4 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of Oscillin

Transgenic constructs containing regulatory region of Oscillin

Deletions and Duplications ( 2 )

Disrupted in

Df(2L)Exel6012

(Ryder, 2004.4.26)

Df(2L)Exel7023

(Ryder, 2004.4.26)

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Phenotype manifest in

Allele

Orthologs

Downloads

Download All DIOPT Orthologs

Download All OrthoDB Orthologs

Human Orthologs (via DIOPT v7.1)

Homo sapiens (Human) (3)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Hsap\GNPDA2

14 of 15

Yes

Hsap\GNPDA1

11 of 15

Yes

Hsap\MPPE1

1 of 15

Model Organism Orthologs (via DIOPT v7.1)

Mus musculus (laboratory mouse) (3)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Mmus\Gnpda1

11 of 15

Yes

Mmus\Gnpda2

11 of 15

Yes

Mmus\Mppe1

1 of 15

Rattus norvegicus (Norway rat) (3)

Rnor\Gnpda2

12 of 13

Yes

Rnor\Gnpda1

7 of 13

Yes

Rnor\Mppe1

1 of 13

Xenopus tropicalis (Western clawed frog) (2)

Xtro\gnpda1

11 of 12

Yes

Xtro\gnpda2

10 of 12

Yes

Danio rerio (Zebrafish) (2)

Drer\gnpda2

14 of 15

Yes

Drer\gnpda1

11 of 15

Yes

Caenorhabditis elegans (Nematode, roundworm) (3)

Cele\T03F6.3

14 of 15

Yes

Cele\B0511.13

1 of 15

Cele\T04A8.13

1 of 15

Yes

Arabidopsis thaliana (thale-cress) (1)

Atha\EMB2024

1 of 9

Yes

Saccharomyces cerevisiae (Brewer's yeast) (0)

No records found.

Schizosaccharomyces pombe (Fission yeast) (0)

No records found.

Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG09190CTV )

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Dmel\Oscillin

Drosophila suzukii

Spotted wing Drosophila

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA19983

Drosophila persimilis

Dper\GL25853

Drosophila willistoni

Dwil\GK21107

Drosophila virilis

Dvir\GJ19587

Drosophila mojavensis

Dmoj\GI17992

Drosophila grimshawi

Dgri\GH10296

Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091506I2 )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Musca domestica

House fly

Mdoa\17018303

Musca domestica

House fly

Mdoa\17025412

Glossina morsitans

Tsetse fly

Gmor\GMOY009440

Glossina morsitans

Tsetse fly

Gmor\GMOY002095

Glossina morsitans

Tsetse fly

Gmor\GMOY012058

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_06597

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_02885

Mayetiola destructor

Hessian fly

Mdes\Mdes016290

Mayetiola destructor

Hessian fly

Mdes\Mdes012970

Aedes aegypti

Yellow fever mosquito

Aaeg\Gnpda1

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL013879

Anopheles darlingi

American malaria mosquito

Adar\ADAC009134

Anopheles darlingi

American malaria mosquito

Adar\ADAC009132

Anopheles gambiae

Malaria mosquito

Agam\AGAP009304

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ008075

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ008074

Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W06YO )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Bombyx mori

Silkmoth

Bmor\BGIBMGA009467

Bombyx mori

Silkmoth

Bmor\BGIBMGA003701

Danaus plexippus

Monarch butterfly

Dple\DPOGS204639-PA

Danaus plexippus

Monarch butterfly

Dple\DPOGS203793-PA

Danaus plexippus

Monarch butterfly

Dple\DPOGS211163-PA

Heliconius melpomene

Postman butterfly

Hmel\HMEL012508

Heliconius melpomene

Postman butterfly

Hmel\HMEL017209

Heliconius melpomene

Postman butterfly

Hmel\HMEL012659

Apis florea

Little honeybee

Aflo\2750485972

Apis florea

Little honeybee

Aflo\5116006660

Apis mellifera

Western honey bee

Amel\LOC552716

Apis mellifera

Western honey bee

Amel\Oscillin

Bombus impatiens

Common eastern bumble bee

Bimp\BIMP15123

Bombus impatiens

Common eastern bumble bee

Bimp\BIMP22766

Bombus terrestris

Buff-tailed bumblebee

Bter\15208476

Bombus terrestris

Buff-tailed bumblebee

Bter\15212388

Linepithema humile

Argentine ant

Lhum\LH18020

Linepithema humile

Argentine ant

Lhum\LH22011

Megachile rotundata

Alfalfa leafcutting bee

Mrot\MROTU:0022f5

Megachile rotundata

Alfalfa leafcutting bee

Mrot\MROTU:0000b2

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG003310

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG012452

Dendroctonus ponderosae

Mountain pine beetle

Dpod\YQE_07222

Dendroctonus ponderosae

Mountain pine beetle

Dpod\YQE_03345

Dendroctonus ponderosae

Mountain pine beetle

Dpod\YQE_01204

Tribolium castaneum

Red flour beetle

Tcas\GLEAN_07627

Tribolium castaneum

Red flour beetle

Tcas\TC003757

Tribolium castaneum

Red flour beetle

Tcas\TC002924

Pediculus humanus

Human body louse

Phum\PHUM618470

Pediculus humanus

Human body louse

Phum\PHUM079800

Pediculus humanus

Human body louse

Phum\PHUM432570

Rhodnius prolixus

Kissing bug

Rpro\RPRC008766

Rhodnius prolixus

Kissing bug

Rpro\RPRC002765

Rhodnius prolixus

Kissing bug

Rpro\RPRC008764

Rhodnius prolixus

Kissing bug

Rpro\RPRC002701

Cimex lectularius

Bed bug

Clec\CLEC000985

Cimex lectularius

Bed bug

Clec\CLEC012520

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI33462

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI009259

Zootermopsis nevadensis

Nevada dampwood termite

Znev\Znev_02537

Zootermopsis nevadensis

Nevada dampwood termite

Znev\Znev_11013

Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X06U0 )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strigamia maritima

European centipede

Smar\SMAR001171

Strigamia maritima

European centipede

Smar\SMAR014850

Strigamia maritima

European centipede

Smar\SMAR002940

Ixodes scapularis

Black-legged tick

Isca\ISCW018498

Ixodes scapularis

Black-legged tick

Isca\ISCW016458

Stegodyphus mimosarum

African social velvet spider

Smim\KFM66495.1

Stegodyphus mimosarum

African social velvet spider

Smim\KFM76601.1

Tetranychus urticae

Two-spotted spider mite

Turt\tetur01g15940

Tetranychus urticae

Two-spotted spider mite

Turt\tetur36g00460

Tetranychus urticae

Two-spotted spider mite

Turt\tetur02g10820

Daphnia pulex

Water flea

Dpux\DAPPUDRAFT_60800

Daphnia pulex

Water flea

Dpux\DAPPUDRAFT_230426

Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G0LJF )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strongylocentrotus purpuratus

Purple sea urchin

Spur\Sp-gnpda1

Strongylocentrotus purpuratus

Purple sea urchin

Spur\Sp-Mppe1

Strongylocentrotus purpuratus

Purple sea urchin

Spur\Sp-gnpda1_1

Ciona intestinalis

Vase tunicate

Cint\LOC100184260

Ciona intestinalis

Vase tunicate

Cint\LOC100179403

Ciona intestinalis

Vase tunicate

Cint\LOC101242593

Gallus gallus

Domestic chicken

Ggal\ENSGALG00000027244

Gallus gallus

Domestic chicken

Ggal\GNPDA2

Gallus gallus

Domestic chicken

Ggal\MPPE1

Gallus gallus

Domestic chicken

Ggal\GNPDA1

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v7.1)

Drosophila melanogaster (Fruit fly) (1)

Gene Symbol

Score

Source

Alignment

1 of 10

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Model Summary Ribbon

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Comments on Models/Modifiers Based on Experimental Evidence ( 0 )

Disease Associations of Human Orthologs (via DIOPT v7.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

GNPDA2; glucosamine-6-phosphate deaminase 2

14 of 15

613222

GNPDA1; glucosamine-6-phosphate deaminase 1

11 of 15

601798

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

esyN Network Diagram

Interactions Browser

View in Interactions Browser

Please see the Physical Interaction reports below for full details

protein-protein

Physical Interaction

Assay

References

Oscillin - CG11095

experimental knowledge based

(Guruharsha et al., 2011)

Oscillin - Gyf

experimental knowledge based

(Guruharsha et al., 2011)

Oscillin - PSR

experimental knowledge based

(Guruharsha et al., 2011)

Oscillin - Tim8

experimental knowledge based

(Guruharsha et al., 2011)

Oscillin - eIF4EHP

experimental knowledge based

(Guruharsha et al., 2011)

Oscillin - nwk

experimental knowledge based

(Guruharsha et al., 2011)

Oscillin - sphe

experimental knowledge based

(Guruharsha et al., 2011)

Summary of Genetic Interactions

esyN Network Diagram

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Subunit Structure (UniProtKB)

Homohexamer.

(UniProt, Q9VMP9 )

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0031717

InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.

33783

MIST (protein-protein) - An integrated Molecular Interaction Database

Oscillin

Pathways

Gene Group - Pathway Membership (FlyBase)

External Data

Linkouts

FlyCyc Pathways - Pathways from a BioCyc PGDB for Dmel

<i>N</i>-acetylglucosamine degradation I

KEGG Pathways - Wiring diagrams of molecular interactions, reactions and relations.

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Glycolysis

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

2-17

Cytogenetic map

25E6-25E6

Sequence location

2L:5,547,086..5,549,614 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

25E6-25E6

Limits computationally determined from genome sequence between P{lacW}Hel25E^k11511 and P{lacW}l(2)k06502^k06502

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

2-17

(FlyBase, 2016)

2-18.5

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (5)

Bloomington

15524

y¹ w^67c23; P{EPgy2}Oscillin^EY01635

65004

y¹ sc^* v¹ sev²¹; P{TRiP.HMC05878}attP40

Harvard

e01629

PBac{RB}Oscillin^e01629

f04360

PBac{WH}Oscillin^f04360

VDRC

v106685

P{KK102245}VIE-260B

Genomic Clones (9)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (183)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequences

BDGP DGC clones

LP11234

Other clones

DPiM_LP11234

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0031717

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0031717

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

33783

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Other Information

Relationship to Other Genes

Source for database identify of

Source for identity of: Oscillin CG6957

(Nakamura et al., 2000)

Source for database merge of

Additional comments

Other Comments

Origin and Etymology

Discoverer

Etymology

Identification

External Crossreferences and Linkouts ( 68 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

33783

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information

Q9VMP9

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0031717

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0031717

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG6957

Flygut - An atlas of the Drosophila adult midgut

FBgn0031717

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

33783

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

Dmel_CG6957

modMine - A data warehouse for the modENCODE project

FBgn0031717

Linkouts

DPiM - Drosophila Protein interaction map

FBgn0031717

DroID - A comprehensive database of gene and protein interactions.

FBgn0031717

DRSC - Results frm RNAi screens

FBgn0031717

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0031717

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG6957-RA

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0031717

FlyCyc Pathways - Pathways from a BioCyc PGDB for Dmel

<i>N</i>-acetylglucosamine degradation I

FlyMine - An integrated database for Drosophila genomics

FBgn0031717

InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.

33783

KEGG Pathways - Wiring diagrams of molecular interactions, reactions and relations.

MIST (protein-protein) - An integrated Molecular Interaction Database

Oscillin

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Glycolysis

Synonyms and Secondary IDs (3)

Reported As

Symbol Synonym

CG6957

(Keleman et al., 2009.8.5, Perkins et al., 2009, Juhász et al., 2007)

Oscillin

(Miller et al., 2017, Japanese National Institute of Genetics, 2012.5.21)

Name Synonyms

Oscillin

(Williams et al., 2012, Zimek and Weber, 2011, Ayroles et al., 2009)

oscillin

(Ferjoux et al., 2007)

Secondary FlyBase IDs

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

References (31)

Report Sections

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