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Gene Dmel\CG9171

General Information
Symbol	Dmel\CG9171	Species	D. melanogaster
Name		Annotation symbol	CG9171
Feature type	protein_coding_gene	FlyBase ID	FBgn0031738
Gene Model Status	Current	Stock availability	28 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	25F4-25F5	Sequence location	2L:5,766,994..5,800,173 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG9171 (FBgn0031738). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity. There is experimental evidence that it is involved in the biological process: inter-male aggressive behavior. 37 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has 5 annotated transcripts and 5 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval/adult Malpighian tubules, inseminated spermatheca. Expression at moderate levels in the following post-embryonic organs or tissues: adult central nervous system, larval/adult midgut, larval/adult hindgut, adult salivary gland, adult female reproductive system, adult male accessory gland. Comments on Affy2 ProbeSet: ProbeSet 1633801_s_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of CG9171. Gene sequence location is 2L:5766994..5800173.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 25F4-25F5   Limits computationally determined from genome sequence between P{lacW}l(2)k06502k06502 and P{EP}bchsEP2299&P{EP}GpdhEP466
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG9171 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.45 Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG9171-RC FBtr0301234  NM_135114   3013   544 CG9171-RD FBtr0301235  NM_001169420   4274   544 CG9171-RE FBtr0301236  NM_164660   3132   544 CG9171-RF FBtr0332038  NM_001273176   3736   544 CG9171-RG FBtr0332039  NM_001273177   3950   544
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG9171-PC   FBpp0290452   61.0   544   7.84     NP_608958   AAF52288 CG9171-PD   FBpp0290453   61.0   544   7.84     NP_001162891   ACZ94182 CG9171-PE   FBpp0290454   61.0   544   7.84     NP_723117   AAN10556 CG9171-PF   FBpp0304348   61.0   544   7.84     NP_001260105   AGB92641 CG9171-PG   FBpp0304349   61.0   544   7.84     NP_001260106   AGB92642
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA202470   AA263494   AA735341   AE014134 AAF52288   AE014134 AAN10556   AE014134 ACZ94182   AE014134 AGB92641   AE014134 AGB92642   AI294014   AI455099   AQ074098   BE978034   BF497627   BH023787   BI483997   BI485695   BI577216   BP541083   BP541084   BP558022   BP558023   BQ103570   BT001709 AAN71464   BT029053   CK604406   CK604407   CL610276   CO179388   CO187260   CO266734   CO267148   CO269862   CO280722   CO280865   CO283459   CO283743   CO290656   CO291711   CO292324   CO295988   CO309719   CO311315   CO311820   CO311824   CO311907   CO323800   CO328137   CO328241   CO332025   CO338203   CO341494   CS133193   CZ466165   CZ466198   CZ466298   CZ466314   CZ467512   CZ468041   CZ468042   CZ472907   CZ476543   CZ477888   CZ482171   CZ486731   CZ486732   CZ487142   CZ487374   CZ487375   EC061475   EC063558   EC063601   EC069030   EC071340   EC073068   EC084807   EC087131   EC090493   EC204468   EC210856   EC212352   EC216585   EC219238   EC220183   EC224984   EC225396   EC230334   EC231996   EC235184   EC236535   EC238802   EC245278   EC248278   EC251727   EC257164   EC257733   EC257743   EC263352   GH980431
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q7JRE1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
expression microarray Stage Tissue/Position (including subcellular localization) Reference adult stage   eye   (Xu et al., 2004) in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 9 -- 10   head mesoderm   (Fisher et al., 2012) embryonic stage 11 -- 12   plasmatocyte primordium   (Fisher et al., 2012) Comment:reported as plasmatocytes anlage embryonic stage 13 -- 16   embryonic/larval posterior spiracle   (Fisher et al., 2012) plasmatocyte   (Fisher et al., 2012)
Additional Descriptive Data
	Eye-enriched transcripts determined by ratio of expression level in wild-type heads. versus expression level in so heads. (Xu et al., 2004)
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval/adult Malpighian tubules, inseminated spermatheca. Expression at moderate levels in the following post-embryonic organs or tissues: adult central nervous system, larval/adult midgut, larval/adult hindgut, adult salivary gland, adult female reproductive system, adult male accessory gland. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    76.425 Larval Midgut    105.5 Larval Hindgut    163.8 Larval Malpighian Tubules    537.2 Larval Fat Body    30.5 Larval Salivary Gland    57.8 Larval Trachea    69.5 Larval Carcass    53.7 Adult Head    53 Adult Eye    76.4 Adult Brain    177.4 Adult Thoracic-Abdominal Ganglion    132.8 Adult Crop    57.7 Adult Midgut    221.6 Adult Hindgut    138.5 Adult Malpighian Tubules    621.5 Adult Fat Body    28.1 Adult Salivary Gland    413.2 Adult Heart    30.175 Adult VirginFemale Spermatheca    420.7 Adult InseminatedFemale Spermatheca    525.3 Adult Ovary    115.9 Adult Testis    31.6 Adult Male Accessory Gland    124.4 Adult Carcass    34.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    76.425 Larval Midgut    105.5 Larval Hindgut    163.8 Larval Malpighian Tubules  537.2 Larval Fat Body    30.5 Larval Salivary Gland    57.8 Larval Trachea    69.5 Larval Carcass    53.7 Adult Head    53 Adult Eye    76.4 Adult Brain    177.4 Adult Thoracic-Abdominal Ganglion    132.8 Adult Crop    57.7 Adult Midgut    221.6 Adult Hindgut    138.5 Adult Malpighian Tubules  (621.5) Adult Fat Body    28.1 Adult Salivary Gland    413.2 Adult Heart    30.175 Adult VirginFemale Spermatheca    420.7 Adult InseminatedFemale Spermatheca  525.3 Adult Ovary    115.9 Adult Testis    31.6 Adult Male Accessory Gland    124.4 Adult Carcass    34.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    76.425 Larval Midgut    105.5 Larval Hindgut    163.8 Larval Malpighian Tubules    537.2 Larval Fat Body    30.5 Larval Salivary Gland    57.8 Larval Trachea    69.5 Larval Carcass    53.7 Adult Head    53 Adult Eye    76.4 Adult Brain    177.4 Adult Thoracic-Abdominal Ganglion    132.8 Adult Crop    57.7 Adult Midgut    221.6 Adult Hindgut    138.5 Adult Malpighian Tubules    621.5 Adult Fat Body    28.1 Adult Salivary Gland    413.2 Adult Heart    30.175 Adult VirginFemale Spermatheca    420.7 Adult InseminatedFemale Spermatheca    525.3 Adult Ovary    115.9 Adult Testis    31.6 Adult Male Accessory Gland    124.4 Adult Carcass    34.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    76.425 Larval Midgut    105.5 Larval Hindgut    163.8 Larval Malpighian Tubules    537.2 Larval Fat Body    30.5 Larval Salivary Gland    57.8 Larval Trachea    69.5 Larval Carcass    53.7 Adult Head    53 Adult Eye    76.4 Adult Brain    177.4 Adult Thoracic-Abdominal Ganglion    132.8 Adult Crop    57.7 Adult Midgut    221.6 Adult Hindgut    138.5 Adult Malpighian Tubules    621.5 Adult Fat Body    28.1 Adult Salivary Gland    413.2 Adult Heart    30.175 Adult VirginFemale Spermatheca    420.7 Adult InseminatedFemale Spermatheca    525.3 Adult Ovary    115.9 Adult Testis    31.6 Adult Male Accessory Gland    124.4 Adult Carcass    34.7 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    76.425 Larval Midgut    105.5 Larval Hindgut    163.8 Larval Malpighian Tubules    537.2 Larval Fat Body    30.5 Larval Salivary Gland    57.8 Larval Trachea    69.5 Larval Carcass    53.7 Adult Head    53 Adult Eye    76.4 Adult Brain    177.4 Adult Thoracic-Abdominal Ganglion    132.8 Adult Crop    57.7 Adult Midgut    221.6 Adult Hindgut    138.5 Adult Malpighian Tubules    621.5 Adult Fat Body    28.1 Adult Salivary Gland    413.2 Adult Heart    30.175 Adult VirginFemale Spermatheca    420.7 Adult InseminatedFemale Spermatheca    525.3 Adult Ovary    115.9 Adult Testis    31.6 Adult Male Accessory Gland    124.4 Adult Carcass    34.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    76.425 Larval Midgut    105.5 Larval Hindgut    163.8 Larval Malpighian Tubules  537.2 Larval Fat Body    30.5 Larval Salivary Gland    57.8 Larval Trachea    69.5 Larval Carcass    53.7 Adult Head    53 Adult Eye    76.4 Adult Brain    177.4 Adult Thoracic-Abdominal Ganglion    132.8 Adult Crop    57.7 Adult Midgut    221.6 Adult Hindgut    138.5 Adult Malpighian Tubules  621.5 Adult Fat Body    28.1 Adult Salivary Gland    413.2 Adult Heart    30.175 Adult VirginFemale Spermatheca    420.7 Adult InseminatedFemale Spermatheca  525.3 Adult Ovary    115.9 Adult Testis    31.6 Adult Male Accessory Gland    124.4 Adult Carcass    34.7 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    76.425 Larval Midgut    105.5 Larval Hindgut    163.8 Larval Malpighian Tubules    537.2 Larval Fat Body    30.5 Larval Salivary Gland    57.8 Larval Trachea    69.5 Larval Carcass    53.7 Adult Head    53 Adult Eye    76.4 Adult Brain    177.4 Adult Thoracic-Abdominal Ganglion    132.8 Adult Crop    57.7 Adult Midgut    221.6 Adult Hindgut    138.5 Adult Malpighian Tubules    621.5 Adult Fat Body    28.1 Adult Salivary Gland    413.2 Adult Heart    30.175 Adult VirginFemale Spermatheca    420.7 Adult InseminatedFemale Spermatheca    525.3 Adult Ovary    115.9 Adult Testis    31.6 Adult Male Accessory Gland    124.4 Adult Carcass    34.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    76.425 Larval Midgut    105.5 Larval Hindgut    163.8 Larval Malpighian Tubules    537.2 Larval Fat Body    30.5 Larval Salivary Gland    57.8 Larval Trachea    69.5 Larval Carcass    53.7 Adult Head    53 Adult Eye    76.4 Adult Brain    177.4 Adult Thoracic-Abdominal Ganglion    132.8 Adult Crop    57.7 Adult Midgut    221.6 Adult Hindgut    138.5 Adult Malpighian Tubules    621.5 Adult Fat Body    28.1 Adult Salivary Gland    413.2 Adult Heart    30.175 Adult VirginFemale Spermatheca    420.7 Adult InseminatedFemale Spermatheca    525.3 Adult Ovary    115.9 Adult Testis    31.6 Adult Male Accessory Gland    124.4 Adult Carcass    34.7 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    53   NA  Eye    76.4   NA  Brain    177.4   76.425  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    132.8   NA  Crop    57.7   105.5  Midgut    221.6   163.8  Hindgut    138.5   537.2  Malpighian Tubules    621.5   30.5  Fat Body    28.1   57.8  Salivary Gland    413.2   NA  Heart    30.175   69.5  Trachea    NA   NA  VirginFemale Spermatheca    420.7   NA  InseminatedFemale Spermatheca    525.3   NA  Ovary    115.9   NA  Testis    31.6   NA  Male Accessory Gland    124.4   53.7  Carcass    34.7 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    6 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    8 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    9 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    3 ovary, virgin 4-day female    14 ovary, mated 4-day female    11 testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    6 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    8 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    9 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    3 ovary, virgin 4-day female    14 ovary, mated 4-day female    11 testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    6 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    8 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    9 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    3 ovary, virgin 4-day female    14 ovary, mated 4-day female    11 testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    6 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    8 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    9 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    3 ovary, virgin 4-day female    14 ovary, mated 4-day female    11 testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    6 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    8 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    9 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    3 ovary, virgin 4-day female    14 ovary, mated 4-day female    11 testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    6 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    8 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    9 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    3 ovary, virgin 4-day female    14 ovary, mated 4-day female    11 testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    6 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    8 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    9 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    3 ovary, virgin 4-day female    14 ovary, mated 4-day female    11 testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    6 head, virgin 1-day female    5 head, virgin 4-day female    4 head, virgin 20-day female    3 head, mated 1-day female    4 head, mated 4-day female    4 head, mated 20-day female    3 head, mated 1-day male    7 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    7 digestive system, 1-day adult    8 digestive system, 4-day adult    8 digestive system, 20-day adult    8 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    9 carcass, 1-day adult    3 carcass, 4-day adult    3 carcass, 20-day adult    3 ovary, virgin 4-day female    14 ovary, mated 4-day female    11 testis, mated 4-day male    2 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    7 embryo 02-04hr    4 embryo 04-06hr    7 embryo 06-08hr    7 embryo 08-10hr    9 embryo 10-12hr    10 embryo 12-14hr    12 embryo 14-16hr    6 embryo 16-18hr    12 embryo 18-20hr    11 embryo 20-22hr    8 embryo 22-24hr    14 larva L1    5 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    10 white prepupae 24hr    10 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    5 adult male 01day    5 adult male 05day    3 adult male 30day    3 adult female 01day    4 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    7 embryo 02-04hr    4 embryo 04-06hr    7 embryo 06-08hr    7 embryo 08-10hr    9 embryo 10-12hr    10 embryo 12-14hr    12 embryo 14-16hr    6 embryo 16-18hr    12 embryo 18-20hr    11 embryo 20-22hr    8 embryo 22-24hr    14 larva L1    5 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    10 white prepupae 24hr    10 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    5 adult male 01day    5 adult male 05day    3 adult male 30day    3 adult female 01day    4 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    7 embryo 02-04hr    4 embryo 04-06hr    7 embryo 06-08hr    7 embryo 08-10hr    9 embryo 10-12hr    10 embryo 12-14hr    12 embryo 14-16hr    6 embryo 16-18hr    12 embryo 18-20hr    11 embryo 20-22hr    8 embryo 22-24hr    14 larva L1    5 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    10 white prepupae 24hr    10 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    5 adult male 01day    5 adult male 05day    3 adult male 30day    3 adult female 01day    4 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    7 embryo 02-04hr    4 embryo 04-06hr    7 embryo 06-08hr    7 embryo 08-10hr    9 embryo 10-12hr    10 embryo 12-14hr    12 embryo 14-16hr    6 embryo 16-18hr    12 embryo 18-20hr    11 embryo 20-22hr    8 embryo 22-24hr    14 larva L1    5 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    10 white prepupae 24hr    10 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    5 adult male 01day    5 adult male 05day    3 adult male 30day    3 adult female 01day    4 adult female 05day    7 adult female 30day    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    7 embryo 02-04hr    4 embryo 04-06hr    7 embryo 06-08hr    7 embryo 08-10hr    9 embryo 10-12hr    10 embryo 12-14hr    12 embryo 14-16hr    6 embryo 16-18hr    12 embryo 18-20hr    11 embryo 20-22hr    8 embryo 22-24hr    14 larva L1    5 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    10 white prepupae 24hr    10 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    5 adult male 01day    5 adult male 05day    3 adult male 30day    3 adult female 01day    4 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    7 embryo 02-04hr    4 embryo 04-06hr    7 embryo 06-08hr    7 embryo 08-10hr    9 embryo 10-12hr    10 embryo 12-14hr    12 embryo 14-16hr    6 embryo 16-18hr    12 embryo 18-20hr    11 embryo 20-22hr    8 embryo 22-24hr    14 larva L1    5 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    10 white prepupae 24hr    10 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    5 adult male 01day    5 adult male 05day    3 adult male 30day    3 adult female 01day    4 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    7 embryo 02-04hr    4 embryo 04-06hr    7 embryo 06-08hr    7 embryo 08-10hr    9 embryo 10-12hr    10 embryo 12-14hr    12 embryo 14-16hr    6 embryo 16-18hr    12 embryo 18-20hr    11 embryo 20-22hr    8 embryo 22-24hr    14 larva L1    5 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    10 white prepupae 24hr    10 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    5 adult male 01day    5 adult male 05day    3 adult male 30day    3 adult female 01day    4 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    7 embryo 02-04hr    4 embryo 04-06hr    7 embryo 06-08hr    7 embryo 08-10hr    9 embryo 10-12hr    10 embryo 12-14hr    12 embryo 14-16hr    6 embryo 16-18hr    12 embryo 18-20hr    11 embryo 20-22hr    8 embryo 22-24hr    14 larva L1    5 larva L2    7 larva L3 12hr old    5 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    10 white prepupae 24hr    10 pupae 2d postWPP    10 pupae 3d postWPP    6 pupae 4d postWPP    5 adult male 01day    5 adult male 05day    3 adult male 30day    3 adult female 01day    4 adult female 05day    7 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4    71 embryonic 1182-4H    7 embryonic GM2    16 embryonic Kc167    2 embryonic S1    13 embryonic S3    53 leg disc CME L1    68 wing disc CME-W2    15 wing disc ML-DmD8    91 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    4 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    96 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    22 ovary fGS/OSS    2 ovary OSC    2 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4  (71) embryonic 1182-4H    7 embryonic GM2    16 embryonic Kc167    2 embryonic S1    13 embryonic S3  (53) leg disc CME L1  (68) wing disc CME-W2    15 wing disc ML-DmD8  (91) wing disc ML-DmD9    3 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    4 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1  (96) CNS ML-DmBG1-c1  (44) CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    22 ovary fGS/OSS    2 ovary OSC    2 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4    71 embryonic 1182-4H    7 embryonic GM2    16 embryonic Kc167    2 embryonic S1    13 embryonic S3    53 leg disc CME L1    68 wing disc CME-W2    15 wing disc ML-DmD8    91 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    4 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    96 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    22 ovary fGS/OSS    2 ovary OSC    2 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4    71 embryonic 1182-4H    7 embryonic GM2    16 embryonic Kc167    2 embryonic S1    13 embryonic S3    53 leg disc CME L1    68 wing disc CME-W2    15 wing disc ML-DmD8    91 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    4 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    96 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    22 ovary fGS/OSS    2 ovary OSC    2 ovary OSS    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4    71 embryonic 1182-4H    7 embryonic GM2    16 embryonic Kc167    2 embryonic S1    13 embryonic S3    53 leg disc CME L1    68 wing disc CME-W2    15 wing disc ML-DmD8    91 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    4 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    96 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    22 ovary fGS/OSS    2 ovary OSC    2 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4  (71) embryonic 1182-4H    7 embryonic GM2    16 embryonic Kc167    2 embryonic S1    13 embryonic S3  (53) leg disc CME L1  (68) wing disc CME-W2    15 wing disc ML-DmD8  (91) wing disc ML-DmD9    3 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    4 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1  (96) CNS ML-DmBG1-c1  (44) CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    22 ovary fGS/OSS    2 ovary OSC    2 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4    71 embryonic 1182-4H    7 embryonic GM2    16 embryonic Kc167    2 embryonic S1    13 embryonic S3    53 leg disc CME L1    68 wing disc CME-W2    15 wing disc ML-DmD8    91 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    4 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    96 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    22 ovary fGS/OSS    2 ovary OSC    2 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    5 Schneider line 2 Sg4    71 embryonic 1182-4H    7 embryonic GM2    16 embryonic Kc167    2 embryonic S1    13 embryonic S3    53 leg disc CME L1    68 wing disc CME-W2    15 wing disc ML-DmD8    91 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    20 wing disc ML-DmD21    4 wing disc ML-DmD32    3 haltere disc ML-DmD17-c3    6 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    7 mixed discs ML-DmD4-c1    96 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    16 tumorous blood cells mbn2    22 ovary fGS/OSS    2 ovary OSC    2 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    9 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    7 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    9 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    7 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    9 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    7 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    9 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    7 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    9 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    7 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    9 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    7 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    9 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    7 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    3 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    5 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    9 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    5 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    4 Ethanol 2.5% 3 hrs, larvae L3    9 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    7 Caffeine 25 mg/ml 48 hrs, 4-day adult    3 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_27 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	BDGP expression data • LD21134 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031738 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9171-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG9171 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG9171CB02706 CG9171EY10262 viable, with Scer\GAL4pnr-MD237 CG9171GD925 CG9171GD10405 CG9171GD17547 Sterility Allele fertile CG9171EY10262 Other Phenotypes Allele behavior defective | recessive CG9171BG02019 body color defective, with Scer\GAL4pnr-MD237 CG9171GD10405 gravitaxis defective | female limited CG9171BG02019 long lived | female limited CG9171BG02019 starvation stress response defective CG9171BG02019 temperature response defective CG9171BG02019 Phenotype manifest in Allele mesothoracic tergum, with Scer\GAL4pnr-MD237 CG9171GD10405
Classical Alleles ( 33 )
For All Classical Alleles Show
Allele of CG9171 Class Mutagen Stocks Known lesion CG91715-HA-1420 1 -- CG91715-HA-1715 1 -- CG9171A192 1 -- CG9171BG02425 P-element activity 1 -- CG9171c00049 piggyBac transposase 1 -- CG9171c00101 piggyBac transposase 1 -- CG9171c01863 piggyBac transposase 1 -- CG9171c02577 piggyBac transposase 1 -- CG9171CB-0695-3 1 -- CG9171CB-6895-3 1 -- CG9171d02607 P-element activity 1 -- CG9171d11736 P-element activity 1 -- CG9171e04409 piggyBac transposase 1 -- CG9171EY10262 P-element activity 1 -- CG9171f04201 piggyBac transposase 1 -- CG9171f04810 piggyBac transposase 1 -- CG9171MI06948 1 -- CG9171NP2111 1 -- CG9171NP2351 1 -- CG9171NP4226 1 -- CG9171NP5131 1 -- CG9171NP5910 1 -- CG91715-HA-2307 0 -- CG9171BG02019 0 -- CG9171c00231 piggyBac transposase 0 -- CG9171c00249 piggyBac transposase 0 -- CG9171CB02706 P-element activity 0 Yes CG9171d09069 P-element activity 0 -- CG9171DG30709 P-element activity 0 -- CG9171EP1239 P-element activity 0 -- CG9171f04599 piggyBac transposase 0 -- CG9171NP2356 0 -- CG9171SH1242 0 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG9171 Class Mutagen Stocks Known lesion CG9171GD17547 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG9171GD925 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG9171GD10405 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG9171KK111446 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel6013 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD925} NA P{KK111446} NA characterization construct P{GD10405} NA P{GD17547} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}CG9171EP1239 NA P{EPgy2}CG9171EY10262 NA P{XP}CG9171d02607 NA P{XP}CG9171d09069 NA P{XP}CG9171d11736 NA miscellaneous insertions Mi{MIC}CG9171MI06948 NA P{GT1}CG9171BG02019 NA P{GT1}CG9171BG02425 NA P{PTT-GB}CG9171CB02706 NA P{RS3}CG9171CB-0695-3 NA P{RS3}CG9171CB-6895-3 NA P{RS5}CG91715-HA-1420 NA P{RS5}CG91715-HA-1715 NA P{RS5}CG91715-HA-2307 NA P{wHy}CG9171DG30709 NA PBac{5HPw+}CG9171A192 NA PBac{PB}CG9171c00049 NA PBac{PB}CG9171c00101 NA PBac{PB}CG9171c00231 NA PBac{PB}CG9171c00249 NA PBac{PB}CG9171c01863 NA PBac{PB}CG9171c02577 NA PBac{RB}CG9171e04409 NA PBac{WH}CG9171f04201 NA PBac{WH}CG9171f04599 NA PBac{WH}CG9171f04810 NA insertion of enhancer trap P{lacW}CG9171SH1242 No P{lacW}l(2)SH1185SH1185 No insertion of enhancer trap binary system P{GawB}CG9171NP2111 No P{GawB}CG9171NP2351 No P{GawB}CG9171NP2356 No P{GawB}CG9171NP4226 No P{GawB}CG9171NP5131 No P{GawB}CG9171NP5910 No
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
inter-male aggressive behavior inferred from mutant phenotype (Edwards et al., 2009)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity inferred from sequence or structural similarity with EMBL:AF029893 (FlyBase, 1992-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG9171 - CG10641 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9171 - CG4872 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9171 - CG8578 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9171 - FK506-bp2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG9171 - tmod anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG9171 allele Gene References
External Data
Linkouts	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0031738 DroID - A comprehensive database of gene and protein interactions. • FBgn0031738
Orthologs
OrthoDB Orthologs (37) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6J9NJP Dipteran inclusive ortholog search EOG6NZV2Q Insect inclusive ortholog search EOG6Q2CB5 Arthropod inclusive ortholog search EOG62Z36M Metazoa inclusive ortholog search EOG61ZT5V
Orthologs in Drosophila Species (EOG6J9NJP)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG9171     Drosophila simulans   Dsim\GD22631 Y   Drosophila sechellia   Dsec\GM17997     Drosophila erecta   Dere\GG24282 Y   Drosophila yakuba   Dyak\GE18978 Y   Drosophila ananassae   Dana\GF14302 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA21591 Y   Drosophila persimilis   Dper\GL19115     Drosophila willistoni   Dwil\GK15419 Y   Drosophila virilis   Dvir\GJ18327 Y   Drosophila mojavensis   Dmoj\GI11204     Drosophila grimshawi   Dgri\GH10688 Y
Orthologs in non-Drosophila Dipterans (EOG6NZV2Q)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL011900   Anopheles gambiae Malaria mosquito  Agam\AGAP009403   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ004149
Orthologs in non-Dipteran Insects (EOG6Q2CB5)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB54802   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG000113   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH18633   Atta cephalotes Leafcutter ant  Acep\ACEP21162   Camponotus floridanus Florida carpenter ant  Cflo\CFLO17142   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL21724   Linepithema humile Argentine ant  Lhum\LH12856   Pogonomyrmex barbatus Red harvester ant  Pbar\PB23801   Solenopsis invicta Red fire ant  Sinv\SINV11618   Acyrthosiphon pisum Pea aphid  Apim\ACYPI000750   Bombyx mori Silkmoth  Bmor\BGIBMGA007703   Pediculus humanus Human body louse  Phum\PHUM599230   Tribolium castaneum Red flour beetle  Tcas\GLEAN_15784   Tribolium castaneum Red flour beetle  Tcas\GLEAN_14920   Tribolium castaneum Red flour beetle  Tcas\TC004372   Tribolium castaneum Red flour beetle  Tcas\TC011128
Orthologs in non-Insect Arthropods (EOG62Z36M)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_306884 Y Ixodes scapularis Deer tick  Isca\ISCW004574 Y Ixodes scapularis Deer tick  Isca\ISCW004573 Y
Orthologs in non-Arthropod Metazoa (EOG61ZT5V)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\C54C8.2 Y Caenorhabditis elegans Nematode  Cele\F01D4.9 Y Caenorhabditis elegans Nematode  Cele\F56H6.6 Y
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (8) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD22631 Drosophila erecta Dere\GG24282 Drosophila yakuba Dyak\GE18978 Drosophila ananassae Dana\GF14302 Drosophila pseudoobscura pseudoobscura Dpse\GA21591 Drosophila willistoni Dwil\GK15419 Drosophila virilis Dvir\GJ18327 Drosophila grimshawi Dgri\GH10688
Stocks & Reagents
Stocks Listed in FlyBase ( 28 )
Harvard	- P{XP}CG9171d02607 - P{XP}CG9171d11736 - PBac{PB}CG9171c00049 - PBac{PB}CG9171c00101 - PBac{PB}CG9171c01863 - PBac{PB}CG9171c02577 - PBac{RB}CG9171e04409 - PBac{WH}CG9171f04201 - PBac{WH}CG9171f04810
VDRC	v104818 P{KK111446}VIE-260B v13450 w1118; P{GD925}v13450 v13451 w1118; P{GD925}v13451
	More stocks available...
Genomic Clones ( 1 )
	BACR07G15 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 42 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT11839 IP06467 RE67001
Other clones	DPiM_RE67001
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	LD01924 LD06793 LP07295 RE69029 RE70868
Other clones	568865 bs72f08 CK01.145D.B2 EK027543 EK059258 EK074656 EK096149 EK147357 EK148844 EK154711 EK155233 EK163329 EK164225 EK191523 EK198026 EK199838 EK212444 EK218953 EK224130 EK226740 EK226761 EK227205 EK302332 EN16204 EP08631 EP08818 EP12542 FGA010D12 FGM312E10 LD21134 RP004241008 UT01160 UUGC0978
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0031738 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33807
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_135114 NM_164660 NM_001169420 NM_001273176 NM_001273177 RefSeq (Proteins) • NP_608958 NP_723117 NP_001162891 NP_001260105 NP_001260106 DDBJ / EMBL / GenBank • AA735341 AAF52288 AAN10556 AAN71464 ACZ94182 AGB92641 AGB92642 AI455099 AQ074098 BH023787 BI483997 BT001709 CL610276 CS133193 CZ466165 CZ466198 CZ466298 CZ466314 CZ467512 CZ468041 CZ468042 CZ472907 CZ476543 CZ477888 CZ482171 CZ486731 CZ486732 CZ487142 CZ487374 CZ487375 Entrez Gene - A searchable database of RefSeq genes. • 33807 UniProtKB/TrEMBL • Q7JRE1
Other Crossreferences
	BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD21134
Linkouts
	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0031738 DroID - A comprehensive database of gene and protein interactions. • FBgn0031738 DRSC - Results from RNAi screens. • FBgn0031738 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031738 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9171-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0031738 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33807 modMine - Data generated by the modENCODE project. • FBgn0031738
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG9171 (Buszczak et al., 2007, Magwire et al., 2010, Keleman et al., 2009.8.5, Edwards et al., 2009, Morozova et al., 2009, Kim and Marqués, 2010)
Name Synonym
Secondary FlyBase IDs
References ( 26 )
Generate a list of	All references relating to this gene ( 26 )
List References by type	Research paper  ( 7 ) Supplementary material  ( 5 ) Personal communication to FlyBase  ( 10 ) FlyBase analysis  ( 2 ) Website  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...