• Home
• Tools
  • Tools Overview
  • Query Tools

    
    • QuickSearch
    • QueryBuilder
    • TermLink
    • CytoSearch
    • Interactions Browser
    • ImageBrowse
    • Find A Person
    • Google™ FlyBase
  • Genomic/Map Tools

    
    • BLAST
    • GBrowse
    • CytoSearch
    • Aberrations Maps
    • Chromosome Maps
    • Coordinates Converter
  • Retrieve/Convert

    
    • Batch Download
    • Coordinates Converter
    • ID Converter
  • Data Submission

    
    • Fast-Track Your Paper
    • Submit Personal Comm
    • Add A New Person
    • Update Person Info
  • People

    
    • Find A Person
    • Add A New Person
    • Update Person Info
• Files
  • Files Overview
  • Downloads:
  • Precomputed files
  • Archived data
  • Releases (FTP)
  • Genomes (FTP)
  • AAA data (FTP)
  • Lists:
  • Transposons (Dmel)
  • Transposons (other)
  • Vectors & Constructs
  • Anatomical Terms
  • Map Conversion
• Species
  • Phylogeny
  • Sequenced Species
  • Synteny Table
  • Color Illustrations
  • Abbreviations
• Documents
  • About FlyBase
  • Reference Manual:
  • Sections
  • Contents
  • Nomenclature
  • Release Notes
• Resources
  • All Resources
  • Model Organisms
  • Stock Collections
  • Other links:
  • BDGP
  • DGRC
  • FlyExpress
  • Interactive Fly
  • modENCODE
  • Textpresso for Fly
• News
  • News
  • FlyBase Forum
  • FlyBase Positions
  • Meetings
  • Courses
  • Fly Board
  • White papers
  • Funding
  • bionet.dros
• Help
  • Google™ FlyBase
  • Site Map
  • FAQs
  • FlyBase Guides
  • Video Tutorials
  • Report help
  • New to Flies
  • Pers. comm.
  • Author guidelines
  • Contact FlyBase
• Archives
  • Prior Release
  • Other Archives
  • Coordinate Converter

Gene Dmel\CG13996

General Information
Symbol	Dmel\CG13996	Species	D. melanogaster
Name		Annotation symbol	CG13996
Feature type	protein_coding_gene	FlyBase ID	FBgn0031763
Gene Model Status	Current	Stock availability	2 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	26B3-26B3	Sequence location	2L:6,020,850..6,021,672 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG13996 (FBgn0031763). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Sterile alpha motif domain; Sterile alpha motif, type 1; Sterile alpha motif/pointed domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of no expression detected. Peak expression observed within 18-24 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: No expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1627815_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG13996. Gene sequence location is 2L:6020850..6021672.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01	Sequence features BKN31477 HFA02328
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 26B3-26B3   Limits computationally determined from genome sequence between P{EP}chicEP713&P{EP}chicEP1095 and P{lacW}Gef26k13720
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG13996 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG13996-RA FBtr0079181  NM_135136   771   256
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG13996-PA   FBpp0078812   30.0   256   5.44     NP_608980   AAF52324
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Sterile alpha motif domain (IPR001660) Sterile alpha motif/pointed domain (IPR013761) Sterile alpha motif, type 1 (IPR021129)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014134 AAF52324   BT124800   EY198579
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VMJ2
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0031763    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0031763 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of no expression detected. Peak expression observed within 18-24 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0031763 expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    5 embryo 04-06hr    2 embryo 06-08hr    4 embryo 08-10hr    16 embryo 10-12hr    30 embryo 12-14hr    14 embryo 14-16hr    18 embryo 16-18hr    44 embryo 18-20hr    208 embryo 20-22hr    428 embryo 22-24hr    316 larva L1    222 larva L2    27 larva L3 12hr old    0 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    13 white prepupae new    9 white prepupae 12hr    6 white prepupae 24hr    34 pupae 2d postWPP    49 pupae 3d postWPP    160 pupae 4d postWPP    48 adult male 01day    20 adult male 05day    38 adult male 30day    43 adult female 01day    7 adult female 05day    0 adult female 30day    1 Expression Level Scale  None   Extremely low   Very low   Low   Moderate  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    5 embryo 04-06hr    2 embryo 06-08hr    4 embryo 08-10hr    16 embryo 10-12hr    30 embryo 12-14hr    14 embryo 14-16hr    18 embryo 16-18hr    44 embryo 18-20hr  (208) embryo 20-22hr  (428) embryo 22-24hr  (316) larva L1  (222) larva L2    27 larva L3 12hr old    0 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    13 white prepupae new    9 white prepupae 12hr    6 white prepupae 24hr    34 pupae 2d postWPP    49 pupae 3d postWPP  (160) pupae 4d postWPP    48 adult male 01day    20 adult male 05day    38 adult male 30day    43 adult female 01day    7 adult female 05day    0 adult female 30day    1 Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    5 embryo 04-06hr    2 embryo 06-08hr    4 embryo 08-10hr    16 embryo 10-12hr    30 embryo 12-14hr    14 embryo 14-16hr    18 embryo 16-18hr    44 embryo 18-20hr    208 embryo 20-22hr    428 embryo 22-24hr    316 larva L1    222 larva L2    27 larva L3 12hr old    0 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    13 white prepupae new    9 white prepupae 12hr    6 white prepupae 24hr    34 pupae 2d postWPP    49 pupae 3d postWPP    160 pupae 4d postWPP    48 adult male 01day    20 adult male 05day    38 adult male 30day    43 adult female 01day    7 adult female 05day    0 adult female 30day    1 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    5 embryo 04-06hr    2 embryo 06-08hr    4 embryo 08-10hr    16 embryo 10-12hr    30 embryo 12-14hr    14 embryo 14-16hr    18 embryo 16-18hr    44 embryo 18-20hr    208 embryo 20-22hr    428 embryo 22-24hr    316 larva L1    222 larva L2    27 larva L3 12hr old    0 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    13 white prepupae new    9 white prepupae 12hr    6 white prepupae 24hr    34 pupae 2d postWPP    49 pupae 3d postWPP    160 pupae 4d postWPP    48 adult male 01day    20 adult male 05day    38 adult male 30day    43 adult female 01day    7 adult female 05day    0 adult female 30day    1 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    5 embryo 04-06hr    2 embryo 06-08hr    4 embryo 08-10hr    16 embryo 10-12hr    30 embryo 12-14hr    14 embryo 14-16hr    18 embryo 16-18hr    44 embryo 18-20hr    208 embryo 20-22hr    428 embryo 22-24hr    316 larva L1    222 larva L2    27 larva L3 12hr old    0 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    13 white prepupae new    9 white prepupae 12hr    6 white prepupae 24hr    34 pupae 2d postWPP    49 pupae 3d postWPP    160 pupae 4d postWPP    48 adult male 01day    20 adult male 05day    38 adult male 30day    43 adult female 01day    7 adult female 05day    0 adult female 30day    1 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0031763 expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    5 embryo 04-06hr    2 embryo 06-08hr    4 embryo 08-10hr    16 embryo 10-12hr    30 embryo 12-14hr    14 embryo 14-16hr    18 embryo 16-18hr    44 embryo 18-20hr    208 embryo 20-22hr    428 embryo 22-24hr    316 larva L1    222 larva L2    27 larva L3 12hr old    0 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    13 white prepupae new    9 white prepupae 12hr    6 white prepupae 24hr    34 pupae 2d postWPP    49 pupae 3d postWPP    160 pupae 4d postWPP    48 adult male 01day    20 adult male 05day    38 adult male 30day    43 adult female 01day    7 adult female 05day    0 adult female 30day    1 Expression Level Scale  None   Extremely low   Very low   Low   Moderate  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    5 embryo 04-06hr    2 embryo 06-08hr    4 embryo 08-10hr    16 embryo 10-12hr    30 embryo 12-14hr    14 embryo 14-16hr    18 embryo 16-18hr    44 embryo 18-20hr  (208) embryo 20-22hr  (428) embryo 22-24hr  (316) larva L1  (222) larva L2    27 larva L3 12hr old    0 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    13 white prepupae new    9 white prepupae 12hr    6 white prepupae 24hr    34 pupae 2d postWPP    49 pupae 3d postWPP  (160) pupae 4d postWPP    48 adult male 01day    20 adult male 05day    38 adult male 30day    43 adult female 01day    7 adult female 05day    0 adult female 30day    1 Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    5 embryo 04-06hr    2 embryo 06-08hr    4 embryo 08-10hr    16 embryo 10-12hr    30 embryo 12-14hr    14 embryo 14-16hr    18 embryo 16-18hr    44 embryo 18-20hr    208 embryo 20-22hr    428 embryo 22-24hr    316 larva L1    222 larva L2    27 larva L3 12hr old    0 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    13 white prepupae new    9 white prepupae 12hr    6 white prepupae 24hr    34 pupae 2d postWPP    49 pupae 3d postWPP    160 pupae 4d postWPP    48 adult male 01day    20 adult male 05day    38 adult male 30day    43 adult female 01day    7 adult female 05day    0 adult female 30day    1 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    5 embryo 04-06hr    2 embryo 06-08hr    4 embryo 08-10hr    16 embryo 10-12hr    30 embryo 12-14hr    14 embryo 14-16hr    18 embryo 16-18hr    44 embryo 18-20hr    208 embryo 20-22hr    428 embryo 22-24hr    316 larva L1    222 larva L2    27 larva L3 12hr old    0 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    13 white prepupae new    9 white prepupae 12hr    6 white prepupae 24hr    34 pupae 2d postWPP    49 pupae 3d postWPP    160 pupae 4d postWPP    48 adult male 01day    20 adult male 05day    38 adult male 30day    43 adult female 01day    7 adult female 05day    0 adult female 30day    1 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    5 embryo 04-06hr    2 embryo 06-08hr    4 embryo 08-10hr    16 embryo 10-12hr    30 embryo 12-14hr    14 embryo 14-16hr    18 embryo 16-18hr    44 embryo 18-20hr    208 embryo 20-22hr    428 embryo 22-24hr    316 larva L1    222 larva L2    27 larva L3 12hr old    0 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    0 larva L3 puffstage 7-9    13 white prepupae new    9 white prepupae 12hr    6 white prepupae 24hr    34 pupae 2d postWPP    49 pupae 3d postWPP    160 pupae 4d postWPP    48 adult male 01day    20 adult male 05day    38 adult male 30day    43 adult female 01day    7 adult female 05day    0 adult female 30day    1 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0031763    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0031763 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: No expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0031763 expression level Tissue   Expression Level Larval Central Nervous System    0.95 Larval Midgut    1.7 Larval Hindgut    0.7 Larval Malpighian Tubules    1.2 Larval Fat Body    2.4 Larval Salivary Gland    4 Larval Trachea    1.05 Larval Carcass    0.825 Adult Head    1.4 Adult Eye    1.025 Adult Brain    5.6 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    0.6 Adult Midgut    5 Adult Hindgut    0.8 Adult Malpighian Tubules    2.9 Adult Fat Body    1 Adult Salivary Gland    6.6 Adult Heart    1.425 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    1.5 Adult Ovary    1.7 Adult Testis    1.3 Adult Male Accessory Gland    1.1 Adult Carcass    1.6 Expression Level Scale  None   Low  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    0.95 Larval Midgut    1.7 Larval Hindgut    0.7 Larval Malpighian Tubules    1.2 Larval Fat Body    2.4 Larval Salivary Gland    4 Larval Trachea    1.05 Larval Carcass    0.825 Adult Head    1.4 Adult Eye    1.025 Adult Brain    5.6 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    0.6 Adult Midgut    5 Adult Hindgut    0.8 Adult Malpighian Tubules    2.9 Adult Fat Body    1 Adult Salivary Gland    6.6 Adult Heart    1.425 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    1.5 Adult Ovary    1.7 Adult Testis    1.3 Adult Male Accessory Gland    1.1 Adult Carcass    1.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    0.95 Larval Midgut    1.7 Larval Hindgut    0.7 Larval Malpighian Tubules    1.2 Larval Fat Body    2.4 Larval Salivary Gland    4 Larval Trachea    1.05 Larval Carcass    0.825 Adult Head    1.4 Adult Eye    1.025 Adult Brain    5.6 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    0.6 Adult Midgut    5 Adult Hindgut    0.8 Adult Malpighian Tubules    2.9 Adult Fat Body    1 Adult Salivary Gland    6.6 Adult Heart    1.425 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    1.5 Adult Ovary    1.7 Adult Testis    1.3 Adult Male Accessory Gland    1.1 Adult Carcass    1.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    0.95 Larval Midgut    1.7 Larval Hindgut    0.7 Larval Malpighian Tubules    1.2 Larval Fat Body    2.4 Larval Salivary Gland    4 Larval Trachea    1.05 Larval Carcass    0.825 Adult Head    1.4 Adult Eye    1.025 Adult Brain    5.6 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    0.6 Adult Midgut    5 Adult Hindgut    0.8 Adult Malpighian Tubules    2.9 Adult Fat Body    1 Adult Salivary Gland    6.6 Adult Heart    1.425 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    1.5 Adult Ovary    1.7 Adult Testis    1.3 Adult Male Accessory Gland    1.1 Adult Carcass    1.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0031763 expression level Tissue   Expression Level Larval Central Nervous System    0.95 Larval Midgut    1.7 Larval Hindgut    0.7 Larval Malpighian Tubules    1.2 Larval Fat Body    2.4 Larval Salivary Gland    4 Larval Trachea    1.05 Larval Carcass    0.825 Adult Head    1.4 Adult Eye    1.025 Adult Brain    5.6 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    0.6 Adult Midgut    5 Adult Hindgut    0.8 Adult Malpighian Tubules    2.9 Adult Fat Body    1 Adult Salivary Gland    6.6 Adult Heart    1.425 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    1.5 Adult Ovary    1.7 Adult Testis    1.3 Adult Male Accessory Gland    1.1 Adult Carcass    1.6 Expression Level Scale  None   Low  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    0.95 Larval Midgut    1.7 Larval Hindgut    0.7 Larval Malpighian Tubules    1.2 Larval Fat Body    2.4 Larval Salivary Gland    4 Larval Trachea    1.05 Larval Carcass    0.825 Adult Head    1.4 Adult Eye    1.025 Adult Brain    5.6 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    0.6 Adult Midgut    5 Adult Hindgut    0.8 Adult Malpighian Tubules    2.9 Adult Fat Body    1 Adult Salivary Gland    6.6 Adult Heart    1.425 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    1.5 Adult Ovary    1.7 Adult Testis    1.3 Adult Male Accessory Gland    1.1 Adult Carcass    1.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    0.95 Larval Midgut    1.7 Larval Hindgut    0.7 Larval Malpighian Tubules    1.2 Larval Fat Body    2.4 Larval Salivary Gland    4 Larval Trachea    1.05 Larval Carcass    0.825 Adult Head    1.4 Adult Eye    1.025 Adult Brain    5.6 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    0.6 Adult Midgut    5 Adult Hindgut    0.8 Adult Malpighian Tubules    2.9 Adult Fat Body    1 Adult Salivary Gland    6.6 Adult Heart    1.425 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    1.5 Adult Ovary    1.7 Adult Testis    1.3 Adult Male Accessory Gland    1.1 Adult Carcass    1.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    0.95 Larval Midgut    1.7 Larval Hindgut    0.7 Larval Malpighian Tubules    1.2 Larval Fat Body    2.4 Larval Salivary Gland    4 Larval Trachea    1.05 Larval Carcass    0.825 Adult Head    1.4 Adult Eye    1.025 Adult Brain    5.6 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    0.6 Adult Midgut    5 Adult Hindgut    0.8 Adult Malpighian Tubules    2.9 Adult Fat Body    1 Adult Salivary Gland    6.6 Adult Heart    1.425 Adult VirginFemale Spermatheca    2.5 Adult InseminatedFemale Spermatheca    1.5 Adult Ovary    1.7 Adult Testis    1.3 Adult Male Accessory Gland    1.1 Adult Carcass    1.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    1.4   NA  Eye    1.025   NA  Brain    5.6   0.95  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    3   NA  Crop    0.6   1.7  Midgut    5   0.7  Hindgut    0.8   1.2  Malpighian Tubules    2.9   2.4  Fat Body    1   4  Salivary Gland    6.6   NA  Heart    1.425   1.05  Trachea    NA   NA  VirginFemale Spermatheca    2.5   NA  InseminatedFemale Spermatheca    1.5   NA  Ovary    1.7   NA  Testis    1.3   NA  Male Accessory Gland    1.1   0.825  Carcass    1.6 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031763 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13996-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG13996GD8191 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG13996 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG13996 Class Mutagen Stocks Known lesion CG13996GD8191 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel8017 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8191} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG13996 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 60007 DroID - A comprehensive database of gene and protein interactions. • FBgn0031763 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33842
Orthologs
Genome-wide drosophilid orthologs	Dana\GF15598 Dere\GG23918 Dgri\GH11021 Dmoj\GI17540 Dper\GL19050 Dpse\GA12685 Dsec\GM18590 Dsim\GD23378 Dvir\GJ15442 Dwil\GK14714 Dyak\GE25822
Curated drosophilid orthologs	Dpse\GA12685
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • PHUM007652-PA Pediculus humanus (human body louse) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0242872 FBgn0216719 FBgn0202635 FBgn0194763 FBgn0173496 FBgn0072731 FBgn0156650 FBgn0140284 FBgn0118502 FBgn0116057 FBgn0092622 BGIBMGA001831
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
VDRC	v46531 w1118; P{GD8191}v46531 v46532 w1118; P{GD8191}v46532
Genomic Clones ( 1 )
	BACR10M11 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 1 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones	RT07854
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0031763 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33842
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_135136 RefSeq (Proteins) • NP_608980 DDBJ / EMBL / GenBank • AAF52324 Entrez Gene - A searchable database of RefSeq genes. • 33842 UniProtKB/TrEMBL • Q9VMJ2
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Sterile alpha motif domain (IPR001660) Sterile alpha motif/pointed domain (IPR013761) Sterile alpha motif, type 1 (IPR021129)
Linkouts
	BioGRID - A database of protein and genetic interactions • 60007 DroID - A comprehensive database of gene and protein interactions. • FBgn0031763 DRSC - Results from RNAi screens. • FBgn0031763 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031763 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13996-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0031763 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33842 InParanoid A subset of ortholog calls from InParanoid. • PHUM007652-PA Pediculus humanus (human body louse) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33842 modMine - Data generated by the modENCODE project. • FBgn0031763 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0242872 FBgn0216719 FBgn0202635 FBgn0194763 FBgn0173496 FBgn0072731 FBgn0156650 FBgn0140284 FBgn0118502 FBgn0116057 FBgn0092622 BGIBMGA001831
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG13996
Name Synonym
Secondary FlyBase IDs
References ( 5 )
Supplementary material	Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]