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Gene Dmel\CG6739

General Information
Symbol	Dmel\CG6739	Species	D. melanogaster
Name		Annotation symbol	CG6739
Feature type	protein_coding_gene	FlyBase ID	FBgn0031926
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	28B4-28B4	Sequence location	2L:7,608,390..7,616,528 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG6739 (FBgn0031926). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Frizzled domain; Low-density lipoprotein (LDL) receptor class A repeat; Low-density lipoprotein (LDL) receptor class A, conserved site. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed during late pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval trachea, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1641423_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG6739. Gene sequence location is 2L:7608390..7616528.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features HFA02987 BKN25904
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 28B4-28B4   Limits computationally determined from genome sequence between P{EP}EP2419EP2419&P{EP}EP575 and P{PZ}l(2)rL220rL220
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG6739 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG6739-RA FBtr0079472  NM_135286   2707   787
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG6739-PA   FBpp0079096   86.9   787   4.62     NP_609130   AAF52532
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Low-density lipoprotein (LDL) receptor class A, conserved site (IPR023415) Frizzled domain (IPR020067) Low-density lipoprotein (LDL) receptor class A repeat (IPR002172)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014134 AAF52532   BI371882   BT011018   CO177980   CO307625   CO339318   CO344730   CZ480738   EC077545   EC210676   EC238126   EC255504   ES690958   GH758891   GH773706   GH780930   GH781315   GH782945   GH783563   GH790984   GH791306   GH800297   GH812053   GH816530   GH823228   GH826570   GH827100   GH847881   GH861158   GH861325   GH862445   GH864128   GH869402   GH872039   GH876269   GH882498   GH892065   GH901822   GH915555   GH918723   GH924068   GH928468   GH931656   GH931771   GH932530   GH937152
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VLZ6
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0031926    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0031926 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed during late pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0031926 expression level Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    3 embryo 04-06hr    4 embryo 06-08hr    22 embryo 08-10hr    52 embryo 10-12hr    216 embryo 12-14hr    377 embryo 14-16hr    874 embryo 16-18hr    1184 embryo 18-20hr    1027 embryo 20-22hr    934 embryo 22-24hr    987 larva L1    430 larva L2    345 larva L3 12hr old    716 larva L3 puffstage 1-2    210 larva L3 puffstage 3-6    209 larva L3 puffstage 7-9    157 white prepupae new    196 white prepupae 12hr    183 white prepupae 24hr    514 pupae 2d postWPP    1968 pupae 3d postWPP    3691 pupae 4d postWPP    1480 adult male 01day    354 adult male 05day    73 adult male 30day    41 adult female 01day    239 adult female 05day    19 adult female 30day    18 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    3 embryo 04-06hr    4 embryo 06-08hr    22 embryo 08-10hr    52 embryo 10-12hr  (216) embryo 12-14hr  (377) embryo 14-16hr  (874) embryo 16-18hr  (1184) embryo 18-20hr  (1027) embryo 20-22hr  (934) embryo 22-24hr  (987) larva L1  (430) larva L2  (345) larva L3 12hr old  (716) larva L3 puffstage 1-2  (210) larva L3 puffstage 3-6  (209) larva L3 puffstage 7-9  (157) white prepupae new  (196) white prepupae 12hr  (183) white prepupae 24hr  (514) pupae 2d postWPP  (1968) pupae 3d postWPP  (3691) pupae 4d postWPP  (1480) adult male 01day  (354) adult male 05day    73 adult male 30day    41 adult female 01day  (239) adult female 05day    19 adult female 30day    18 Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    3 embryo 04-06hr    4 embryo 06-08hr    22 embryo 08-10hr    52 embryo 10-12hr    216 embryo 12-14hr    377 embryo 14-16hr    874 embryo 16-18hr    1184 embryo 18-20hr    1027 embryo 20-22hr    934 embryo 22-24hr    987 larva L1    430 larva L2    345 larva L3 12hr old    716 larva L3 puffstage 1-2    210 larva L3 puffstage 3-6    209 larva L3 puffstage 7-9    157 white prepupae new    196 white prepupae 12hr    183 white prepupae 24hr    514 pupae 2d postWPP  (1968) pupae 3d postWPP  (3691) pupae 4d postWPP  1480 adult male 01day    354 adult male 05day    73 adult male 30day    41 adult female 01day    239 adult female 05day    19 adult female 30day    18 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    3 embryo 04-06hr    4 embryo 06-08hr    22 embryo 08-10hr    52 embryo 10-12hr    216 embryo 12-14hr    377 embryo 14-16hr    874 embryo 16-18hr    1184 embryo 18-20hr    1027 embryo 20-22hr    934 embryo 22-24hr    987 larva L1    430 larva L2    345 larva L3 12hr old    716 larva L3 puffstage 1-2    210 larva L3 puffstage 3-6    209 larva L3 puffstage 7-9    157 white prepupae new    196 white prepupae 12hr    183 white prepupae 24hr    514 pupae 2d postWPP    1968 pupae 3d postWPP    3691 pupae 4d postWPP    1480 adult male 01day    354 adult male 05day    73 adult male 30day    41 adult female 01day    239 adult female 05day    19 adult female 30day    18 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    3 embryo 04-06hr    4 embryo 06-08hr    22 embryo 08-10hr    52 embryo 10-12hr    216 embryo 12-14hr    377 embryo 14-16hr    874 embryo 16-18hr    1184 embryo 18-20hr    1027 embryo 20-22hr    934 embryo 22-24hr    987 larva L1    430 larva L2    345 larva L3 12hr old    716 larva L3 puffstage 1-2    210 larva L3 puffstage 3-6    209 larva L3 puffstage 7-9    157 white prepupae new    196 white prepupae 12hr    183 white prepupae 24hr    514 pupae 2d postWPP    1968 pupae 3d postWPP    3691 pupae 4d postWPP    1480 adult male 01day    354 adult male 05day    73 adult male 30day    41 adult female 01day    239 adult female 05day    19 adult female 30day    18 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0031926 expression level Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    3 embryo 04-06hr    4 embryo 06-08hr    22 embryo 08-10hr    52 embryo 10-12hr    216 embryo 12-14hr    377 embryo 14-16hr    874 embryo 16-18hr    1184 embryo 18-20hr    1027 embryo 20-22hr    934 embryo 22-24hr    987 larva L1    430 larva L2    345 larva L3 12hr old    716 larva L3 puffstage 1-2    210 larva L3 puffstage 3-6    209 larva L3 puffstage 7-9    157 white prepupae new    196 white prepupae 12hr    183 white prepupae 24hr    514 pupae 2d postWPP    1968 pupae 3d postWPP    3691 pupae 4d postWPP    1480 adult male 01day    354 adult male 05day    73 adult male 30day    41 adult female 01day    239 adult female 05day    19 adult female 30day    18 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    3 embryo 04-06hr    4 embryo 06-08hr    22 embryo 08-10hr    52 embryo 10-12hr  (216) embryo 12-14hr  (377) embryo 14-16hr  (874) embryo 16-18hr  (1184) embryo 18-20hr  (1027) embryo 20-22hr  (934) embryo 22-24hr  (987) larva L1  (430) larva L2  (345) larva L3 12hr old  (716) larva L3 puffstage 1-2  (210) larva L3 puffstage 3-6  (209) larva L3 puffstage 7-9  (157) white prepupae new  (196) white prepupae 12hr  (183) white prepupae 24hr  (514) pupae 2d postWPP  (1968) pupae 3d postWPP  (3691) pupae 4d postWPP  (1480) adult male 01day  (354) adult male 05day    73 adult male 30day    41 adult female 01day  (239) adult female 05day    19 adult female 30day    18 Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    3 embryo 04-06hr    4 embryo 06-08hr    22 embryo 08-10hr    52 embryo 10-12hr    216 embryo 12-14hr    377 embryo 14-16hr    874 embryo 16-18hr    1184 embryo 18-20hr    1027 embryo 20-22hr    934 embryo 22-24hr    987 larva L1    430 larva L2    345 larva L3 12hr old    716 larva L3 puffstage 1-2    210 larva L3 puffstage 3-6    209 larva L3 puffstage 7-9    157 white prepupae new    196 white prepupae 12hr    183 white prepupae 24hr    514 pupae 2d postWPP  1968 pupae 3d postWPP  (3691) pupae 4d postWPP  1480 adult male 01day    354 adult male 05day    73 adult male 30day    41 adult female 01day    239 adult female 05day    19 adult female 30day    18 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    3 embryo 04-06hr    4 embryo 06-08hr    22 embryo 08-10hr    52 embryo 10-12hr    216 embryo 12-14hr    377 embryo 14-16hr    874 embryo 16-18hr    1184 embryo 18-20hr    1027 embryo 20-22hr    934 embryo 22-24hr    987 larva L1    430 larva L2    345 larva L3 12hr old    716 larva L3 puffstage 1-2    210 larva L3 puffstage 3-6    209 larva L3 puffstage 7-9    157 white prepupae new    196 white prepupae 12hr    183 white prepupae 24hr    514 pupae 2d postWPP    1968 pupae 3d postWPP    3691 pupae 4d postWPP    1480 adult male 01day    354 adult male 05day    73 adult male 30day    41 adult female 01day    239 adult female 05day    19 adult female 30day    18 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    3 embryo 04-06hr    4 embryo 06-08hr    22 embryo 08-10hr    52 embryo 10-12hr    216 embryo 12-14hr    377 embryo 14-16hr    874 embryo 16-18hr    1184 embryo 18-20hr    1027 embryo 20-22hr    934 embryo 22-24hr    987 larva L1    430 larva L2    345 larva L3 12hr old    716 larva L3 puffstage 1-2    210 larva L3 puffstage 3-6    209 larva L3 puffstage 7-9    157 white prepupae new    196 white prepupae 12hr    183 white prepupae 24hr    514 pupae 2d postWPP    1968 pupae 3d postWPP    3691 pupae 4d postWPP    1480 adult male 01day    354 adult male 05day    73 adult male 30day    41 adult female 01day    239 adult female 05day    19 adult female 30day    18 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0031926    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0031926 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval trachea, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0031926 expression level Tissue   Expression Level Larval Central Nervous System    40.3 Larval Midgut    6.1 Larval Hindgut    75.4 Larval Malpighian Tubules    6.7 Larval Fat Body no informative data Larval Salivary Gland    6.9 Larval Trachea    324.5 Larval Carcass    104.45 Adult Head    34 Adult Eye    30.875 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    28.4 Adult Midgut    4.9 Adult Hindgut    5.1 Adult Malpighian Tubules    6.1 Adult Fat Body    8.4 Adult Salivary Gland no informative data Adult Heart    8.225 Adult VirginFemale Spermatheca    6.2 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    8.2 Adult Testis    9.7 Adult Male Accessory Gland no informative data Adult Carcass    28.2 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    40.3 Larval Midgut    6.1 Larval Hindgut    75.4 Larval Malpighian Tubules    6.7 Larval Fat Body no informative data Larval Salivary Gland    6.9 Larval Trachea    324.5 Larval Carcass    104.45 Adult Head    34 Adult Eye    30.875 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    28.4 Adult Midgut    4.9 Adult Hindgut    5.1 Adult Malpighian Tubules    6.1 Adult Fat Body    8.4 Adult Salivary Gland no informative data Adult Heart    8.225 Adult VirginFemale Spermatheca    6.2 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    8.2 Adult Testis    9.7 Adult Male Accessory Gland no informative data Adult Carcass    28.2 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    40.3 Larval Midgut    6.1 Larval Hindgut    75.4 Larval Malpighian Tubules    6.7 Larval Fat Body no informative data Larval Salivary Gland    6.9 Larval Trachea    324.5 Larval Carcass    104.45 Adult Head    34 Adult Eye    30.875 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    28.4 Adult Midgut    4.9 Adult Hindgut    5.1 Adult Malpighian Tubules    6.1 Adult Fat Body    8.4 Adult Salivary Gland no informative data Adult Heart    8.225 Adult VirginFemale Spermatheca    6.2 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    8.2 Adult Testis    9.7 Adult Male Accessory Gland no informative data Adult Carcass    28.2 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    40.3 Larval Midgut    6.1 Larval Hindgut    75.4 Larval Malpighian Tubules    6.7 Larval Fat Body no informative data Larval Salivary Gland    6.9 Larval Trachea    324.5 Larval Carcass    104.45 Adult Head    34 Adult Eye    30.875 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    28.4 Adult Midgut    4.9 Adult Hindgut    5.1 Adult Malpighian Tubules    6.1 Adult Fat Body    8.4 Adult Salivary Gland no informative data Adult Heart    8.225 Adult VirginFemale Spermatheca    6.2 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    8.2 Adult Testis    9.7 Adult Male Accessory Gland no informative data Adult Carcass    28.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0031926 expression level Tissue   Expression Level Larval Central Nervous System    40.3 Larval Midgut    6.1 Larval Hindgut    75.4 Larval Malpighian Tubules    6.7 Larval Fat Body no informative data Larval Salivary Gland    6.9 Larval Trachea    324.5 Larval Carcass    104.45 Adult Head    34 Adult Eye    30.875 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    28.4 Adult Midgut    4.9 Adult Hindgut    5.1 Adult Malpighian Tubules    6.1 Adult Fat Body    8.4 Adult Salivary Gland no informative data Adult Heart    8.225 Adult VirginFemale Spermatheca    6.2 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    8.2 Adult Testis    9.7 Adult Male Accessory Gland no informative data Adult Carcass    28.2 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    40.3 Larval Midgut    6.1 Larval Hindgut    75.4 Larval Malpighian Tubules    6.7 Larval Fat Body no informative data Larval Salivary Gland    6.9 Larval Trachea    324.5 Larval Carcass    104.45 Adult Head    34 Adult Eye    30.875 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    28.4 Adult Midgut    4.9 Adult Hindgut    5.1 Adult Malpighian Tubules    6.1 Adult Fat Body    8.4 Adult Salivary Gland no informative data Adult Heart    8.225 Adult VirginFemale Spermatheca    6.2 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    8.2 Adult Testis    9.7 Adult Male Accessory Gland no informative data Adult Carcass    28.2 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    40.3 Larval Midgut    6.1 Larval Hindgut    75.4 Larval Malpighian Tubules    6.7 Larval Fat Body no informative data Larval Salivary Gland    6.9 Larval Trachea    324.5 Larval Carcass    104.45 Adult Head    34 Adult Eye    30.875 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    28.4 Adult Midgut    4.9 Adult Hindgut    5.1 Adult Malpighian Tubules    6.1 Adult Fat Body    8.4 Adult Salivary Gland no informative data Adult Heart    8.225 Adult VirginFemale Spermatheca    6.2 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    8.2 Adult Testis    9.7 Adult Male Accessory Gland no informative data Adult Carcass    28.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    40.3 Larval Midgut    6.1 Larval Hindgut    75.4 Larval Malpighian Tubules    6.7 Larval Fat Body no informative data Larval Salivary Gland    6.9 Larval Trachea    324.5 Larval Carcass    104.45 Adult Head    34 Adult Eye    30.875 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    28.4 Adult Midgut    4.9 Adult Hindgut    5.1 Adult Malpighian Tubules    6.1 Adult Fat Body    8.4 Adult Salivary Gland no informative data Adult Heart    8.225 Adult VirginFemale Spermatheca    6.2 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    8.2 Adult Testis    9.7 Adult Male Accessory Gland no informative data Adult Carcass    28.2 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body no informative data Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland no informative data Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland no informative data Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    34   NA  Eye    30.875   NA  Brain    3.5   40.3  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    5   NA  Crop    28.4   6.1  Midgut    4.9   75.4  Hindgut    5.1   6.7  Malpighian Tubules    6.1   no informative data  Fat Body    8.4   6.9  Salivary Gland    no informative data   NA  Heart    8.225   324.5  Trachea    NA   NA  VirginFemale Spermatheca    6.2   NA  InseminatedFemale Spermatheca    6.6   NA  Ovary    8.2   NA  Testis    9.7   NA  Male Accessory Gland    no informative data   104.45  Carcass    28.2 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_29
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031926 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6739-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG6739 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG6739 Class Mutagen Stocks Known lesion CG6739d09967 P-element activity 3 -- CG6739e02971 piggyBac transposase 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG6739 Class Mutagen Stocks Known lesion CG6739KK105904 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG6739GD970 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel6018 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD970} NA P{KK105904} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{XP}CG6739d09967 NA miscellaneous insertions PBac{RB}CG6739e02971 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG6739 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0031926 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34037
Orthologs
Genome-wide drosophilid orthologs	Dana\GF15867 Dere\GG10486 Dgri\GH11153 Dmoj\GI17859 Dper\GL19277 Dpse\GA19823 Dsec\GM16502 Dsim\GD23478 Dvir\GJ17357 Dwil\GK24663 Dyak\GE14586
Curated drosophilid orthologs	Dpse\GA19823
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL008735-PA Aedes aegypti (mosquito) ENSCINP00000005112 Ciona intestinalis (sea squirt) CPIJ011799 Culex pipens (mosquito) ENSOANP00000008228 Ornithorynchus anatinus (platypus) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • ISCW004862 FBgn0232182 FBgn0226623 FBgn0204529 FBgn0194858 FBgn0183765 FBgn0171417 JGI_V11_328169 FBgn0079819 FBgn0156876 FBgn0140600 FBgn0127086 FBgn0127085 FBgn0118634 FBgn0102794 FBgn0092890 CPIJ011799 BGIBMGA003646 AGAP010706 AAEL008735 PHUM617750
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	19324 w1118; P{XP}CG6739d09967/CyO
Harvard	- P{XP}CG6739d09967 - PBac{RB}CG6739e02971
Kyoto	114564 yd2 w1118 P{ey-FLP.N}2; P{XP}CG6739d09967 P{neoFRT}40A/CyO y+
VDRC	v108197 P{KK105904}VIE-260B
Genomic Clones ( 1 )
	BACR13D17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 42 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE58902
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	39789 148956 149916 EC255504 EK054908 EK255122 EP01617 EP19807 RP003114521 RP003115171 RP003156819 RP003181799 RP003187478 RP003237432 RP003257891 RP003272378 RP003278010 RP003283366 RP003288602 RP003303308 RP003307407 RP003308847 RP003312294 RP003336985 RP003348187 RP003348514 RP003348743 RP003358372 RP003382117 RP003436683 RP003444588 RP003474615 RP003483382 RP003489808 RP003497314 RP003505316 RP003564535 RP003598004 RP003636976 RP003647114 RP003660726
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0031926 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34037
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_135286 RefSeq (Proteins) • NP_609130 DDBJ / EMBL / GenBank • AAF52532 BI371882 CZ480738 Entrez Gene - A searchable database of RefSeq genes. • 34037 UniProtKB/TrEMBL • Q9VLZ6
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Low-density lipoprotein (LDL) receptor class A, conserved site (IPR023415) Frizzled domain (IPR020067) Low-density lipoprotein (LDL) receptor class A repeat (IPR002172)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0031926 DRSC - Results from RNAi screens. • FBgn0031926 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0031926 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6739-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0031926 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34037 InParanoid A subset of ortholog calls from InParanoid. • AAEL008735-PA Aedes aegypti (mosquito) ENSCINP00000005112 Ciona intestinalis (sea squirt) CPIJ011799 Culex pipens (mosquito) ENSOANP00000008228 Ornithorynchus anatinus (platypus) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34037 modMine - Data generated by the modENCODE project. • FBgn0031926 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • ISCW004862 FBgn0232182 FBgn0226623 FBgn0204529 FBgn0194858 FBgn0183765 FBgn0171417 JGI_V11_328169 FBgn0079819 FBgn0156876 FBgn0140600 FBgn0127086 FBgn0127085 FBgn0118634 FBgn0102794 FBgn0092890 CPIJ011799 BGIBMGA003646 AGAP010706 AAEL008735 PHUM617750
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG6739 (Lebo et al., 2009, Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
References ( 13 )
Research paper	Lebo et al., 2009, BMC Genomics 10: 80 Somatic, germline and sex hierarchy regulated gene expression during Drosophila metamorphosis. [FBrf0207472]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Dietzl et al., 2007, Nature 448(7150): Supplementary Table 1. [FBrf0202579]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
FlyBase analysis	FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. Genomic mapping of Exelixis insertion collection. [FBrf0184340] Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]
Curated genome annotation	Gu, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126670]