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Gene Dmel\C1GalTA

General Information
Symbol	Dmel\C1GalTA	Species	D. melanogaster
Name	Core 1 Galactosyltransferase A	Annotation symbol	CG9520
Feature type	protein_coding_gene	FlyBase ID	FBgn0032078
Gene Model Status	Current	Stock availability	13 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	29F5-29F5	Sequence location	2L:8,943,455..8,951,216 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Core 1 Galactosyltransferase A is referred to in FlyBase by the symbol Dmel\C1GalTA (CG9520, FBgn0032078). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: beta-1,3-galactosyltransferase activity; glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. There is experimental evidence that it is involved in the biological process: protein glycosylation; glycolipid biosynthetic process; central nervous system morphogenesis; O-glycan processing, core 1. 12 alleles are reported. The phenotypes of these alleles are annotated with: plasmatocyte; leg; ventral nerve cord; embryonic/larval brain. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: C1GALT1; Fringe-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult thoracico-abdominal ganglion, adult midgut, adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, larval midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval trachea, adult spermathecae, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1627589_s_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of C1GalTA. Gene sequence location is 2L:8943455..8951216.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 29F5-29F5   Limits computationally determined from genome sequence between P{lacW}l(2)k04003k04003 and P{PZ}tai01351
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\C1GalTA for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.50 Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) C1GalTA-RA FBtr0079790  NM_164839   1931   388 C1GalTA-RB FBtr0079788  NM_135414   2227   388 C1GalTA-RC FBtr0079789  NM_164840   2019   388
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein C1GalTA-PA   FBpp0079390   44.3   388   6.65     NP_723427   AAF52725 C1GalTA-PB   FBpp0079388   44.3   388   6.65     NP_609258   AAF52723 C1GalTA-PC   FBpp0079389   44.3   388   6.65     NP_723428   AAF52724
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Fringe-like (IPR003378) C1GALT1 (IPR026842)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA540683   AA540971   AA540972   AA698756   AE014134 AAF52723   AE014134 AAF52724   AE014134 AAF52725   AI455762   AI532959   AI534298   AI543041   AI543203   AI546714   AI546718   AW942553   AX175176   AY061283 AAL28831   BG636371   BG637313   BG639821   BH740800   BI237927   BI238616   BI242485   BI373315   CL943575   CO266130   CO286851   CO286936   CO287102   CO291337   CO293919   CO297002   CO326751   CZ467471   CZ467472   CZ472058   EC058142   EC060709   EC063899   EC072967   EC081398   EC196103   EC200279   EC224874   EC247724   EC266383   EV578074   FD585498   FD585544   FD585634   FD585663   FD585864   FD585969   FD585982   FD586000   FD586037   FD586148   FD586151   FD586381   FD586414   FD587054   FD587256   GH739550   GH740399   GH741170   GH742031   GH744938   GH745060   GH746403   GH747418   GH761655   GH762528   GH763040   GH763053   GH763252   GH763612   GH763653   GH763757   GH763917   GH763926   GH764076   GH765155   GH765613   GH765733   GH766097   GH768026   GH779322   GH779470   GH779837   GO254502
UniProtKB/Swiss-Prot	Q7K237
UniProtKB/TrEMBL	E2QCQ7
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 9 -- 10   amnioserosa   (Fisher et al., 2012) amnioserosa primordium   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) embryonic stage 11 -- 12   amnioserosa   (Fisher et al., 2012) embryonic stage 12 -- 14   amnioserosa   (Lin et al., 2008) embryonic stage 13 -- 16   amnioserosa   (Fisher et al., 2012) crystal cell   (Fisher et al., 2012) embryonic brain   (Fisher et al., 2012) ventral nerve cord   (Fisher et al., 2012) embryonic stage 16   ventral nerve cord   (Lin et al., 2008) embryonic/larval brain   (Lin et al., 2008) embryonic/larval central nervous system   (Lin et al., 2008) larval stage   embryonic/larval gut   (Lin et al., 2008) first instar larval stage   embryonic/larval central nervous system   (Lin et al., 2008) third instar larval stage   ventral nerve cord   (Lin et al., 2008) embryonic/larval brain   (Lin et al., 2008) wing disc   (Lin et al., 2008) imaginal disc   (Lin et al., 2008) adult stage | male   ejaculatory duct   (Lin et al., 2008) adult stage | female   nurse cell   (Lin et al., 2008)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult thoracico-abdominal ganglion, adult midgut, adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, larval midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval trachea, adult spermathecae, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    448.775 Larval Midgut    404.6 Larval Hindgut    104.1 Larval Malpighian Tubules    201.8 Larval Fat Body    163.9 Larval Salivary Gland    44.4 Larval Trachea    223.15 Larval Carcass    66.075 Adult Head    253.8 Adult Eye    189.025 Adult Brain    497.2 Adult Thoracic-Abdominal Ganglion    607 Adult Crop    97.8 Adult Midgut    506.1 Adult Hindgut    133.3 Adult Malpighian Tubules    341.1 Adult Fat Body    169.8 Adult Salivary Gland    25.3 Adult Heart    342.175 Adult VirginFemale Spermatheca    285.8 Adult InseminatedFemale Spermatheca    267.7 Adult Ovary    631.6 Adult Testis    36 Adult Male Accessory Gland    31.8 Adult Carcass    111.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    448.775 Larval Midgut    404.6 Larval Hindgut    104.1 Larval Malpighian Tubules    201.8 Larval Fat Body    163.9 Larval Salivary Gland    44.4 Larval Trachea    223.15 Larval Carcass    66.075 Adult Head    253.8 Adult Eye    189.025 Adult Brain    497.2 Adult Thoracic-Abdominal Ganglion  (607) Adult Crop    97.8 Adult Midgut  506.1 Adult Hindgut    133.3 Adult Malpighian Tubules    341.1 Adult Fat Body    169.8 Adult Salivary Gland    25.3 Adult Heart    342.175 Adult VirginFemale Spermatheca    285.8 Adult InseminatedFemale Spermatheca    267.7 Adult Ovary  (631.6) Adult Testis    36 Adult Male Accessory Gland    31.8 Adult Carcass    111.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    448.775 Larval Midgut    404.6 Larval Hindgut    104.1 Larval Malpighian Tubules    201.8 Larval Fat Body    163.9 Larval Salivary Gland    44.4 Larval Trachea    223.15 Larval Carcass    66.075 Adult Head    253.8 Adult Eye    189.025 Adult Brain    497.2 Adult Thoracic-Abdominal Ganglion    607 Adult Crop    97.8 Adult Midgut    506.1 Adult Hindgut    133.3 Adult Malpighian Tubules    341.1 Adult Fat Body    169.8 Adult Salivary Gland    25.3 Adult Heart    342.175 Adult VirginFemale Spermatheca    285.8 Adult InseminatedFemale Spermatheca    267.7 Adult Ovary    631.6 Adult Testis    36 Adult Male Accessory Gland    31.8 Adult Carcass    111.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    448.775 Larval Midgut    404.6 Larval Hindgut    104.1 Larval Malpighian Tubules    201.8 Larval Fat Body    163.9 Larval Salivary Gland    44.4 Larval Trachea    223.15 Larval Carcass    66.075 Adult Head    253.8 Adult Eye    189.025 Adult Brain    497.2 Adult Thoracic-Abdominal Ganglion    607 Adult Crop    97.8 Adult Midgut    506.1 Adult Hindgut    133.3 Adult Malpighian Tubules    341.1 Adult Fat Body    169.8 Adult Salivary Gland    25.3 Adult Heart    342.175 Adult VirginFemale Spermatheca    285.8 Adult InseminatedFemale Spermatheca    267.7 Adult Ovary    631.6 Adult Testis    36 Adult Male Accessory Gland    31.8 Adult Carcass    111.3 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    448.775 Larval Midgut    404.6 Larval Hindgut    104.1 Larval Malpighian Tubules    201.8 Larval Fat Body    163.9 Larval Salivary Gland    44.4 Larval Trachea    223.15 Larval Carcass    66.075 Adult Head    253.8 Adult Eye    189.025 Adult Brain    497.2 Adult Thoracic-Abdominal Ganglion    607 Adult Crop    97.8 Adult Midgut    506.1 Adult Hindgut    133.3 Adult Malpighian Tubules    341.1 Adult Fat Body    169.8 Adult Salivary Gland    25.3 Adult Heart    342.175 Adult VirginFemale Spermatheca    285.8 Adult InseminatedFemale Spermatheca    267.7 Adult Ovary    631.6 Adult Testis    36 Adult Male Accessory Gland    31.8 Adult Carcass    111.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    448.775 Larval Midgut    404.6 Larval Hindgut    104.1 Larval Malpighian Tubules    201.8 Larval Fat Body    163.9 Larval Salivary Gland    44.4 Larval Trachea    223.15 Larval Carcass    66.075 Adult Head    253.8 Adult Eye    189.025 Adult Brain    497.2 Adult Thoracic-Abdominal Ganglion  607 Adult Crop    97.8 Adult Midgut  506.1 Adult Hindgut    133.3 Adult Malpighian Tubules    341.1 Adult Fat Body    169.8 Adult Salivary Gland    25.3 Adult Heart    342.175 Adult VirginFemale Spermatheca    285.8 Adult InseminatedFemale Spermatheca    267.7 Adult Ovary  631.6 Adult Testis    36 Adult Male Accessory Gland    31.8 Adult Carcass    111.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    448.775 Larval Midgut    404.6 Larval Hindgut    104.1 Larval Malpighian Tubules    201.8 Larval Fat Body    163.9 Larval Salivary Gland    44.4 Larval Trachea    223.15 Larval Carcass    66.075 Adult Head    253.8 Adult Eye    189.025 Adult Brain    497.2 Adult Thoracic-Abdominal Ganglion    607 Adult Crop    97.8 Adult Midgut    506.1 Adult Hindgut    133.3 Adult Malpighian Tubules    341.1 Adult Fat Body    169.8 Adult Salivary Gland    25.3 Adult Heart    342.175 Adult VirginFemale Spermatheca    285.8 Adult InseminatedFemale Spermatheca    267.7 Adult Ovary    631.6 Adult Testis    36 Adult Male Accessory Gland    31.8 Adult Carcass    111.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    448.775 Larval Midgut    404.6 Larval Hindgut    104.1 Larval Malpighian Tubules    201.8 Larval Fat Body    163.9 Larval Salivary Gland    44.4 Larval Trachea    223.15 Larval Carcass    66.075 Adult Head    253.8 Adult Eye    189.025 Adult Brain    497.2 Adult Thoracic-Abdominal Ganglion    607 Adult Crop    97.8 Adult Midgut    506.1 Adult Hindgut    133.3 Adult Malpighian Tubules    341.1 Adult Fat Body    169.8 Adult Salivary Gland    25.3 Adult Heart    342.175 Adult VirginFemale Spermatheca    285.8 Adult InseminatedFemale Spermatheca    267.7 Adult Ovary    631.6 Adult Testis    36 Adult Male Accessory Gland    31.8 Adult Carcass    111.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    253.8   NA  Eye    189.025   NA  Brain    497.2   448.775  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    607   NA  Crop    97.8   404.6  Midgut    506.1   104.1  Hindgut    133.3   201.8  Malpighian Tubules    341.1   163.9  Fat Body    169.8   44.4  Salivary Gland    no informative data   NA  Heart    342.175   223.15  Trachea    NA   NA  VirginFemale Spermatheca    285.8   NA  InseminatedFemale Spermatheca    267.7   NA  Ovary    631.6   NA  Testis    36   NA  Male Accessory Gland    31.8   66.075  Carcass    111.3 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    17 central nervous system, pupae P8    23 head, virgin 1-day female    10 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    7 head, mated 1-day male    16 head, mated 4-day male    15 head, mated 20-day male    17 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    554 digestive system, larvae L3 wandering    39 digestive system, 1-day adult    21 digestive system, 4-day adult    15 digestive system, 20-day adult    18 fat body, larvae L3 wandering    3 fat body, white prepupae    23 fat body, pupae P8    7 carcass, larvae L3 wandering    7 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    35 ovary, mated 4-day female    30 testis, mated 4-day male    6 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    17 central nervous system, pupae P8    23 head, virgin 1-day female    10 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    7 head, mated 1-day male    16 head, mated 4-day male    15 head, mated 20-day male    17 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae  (554) digestive system, larvae L3 wandering  (39) digestive system, 1-day adult    21 digestive system, 4-day adult    15 digestive system, 20-day adult    18 fat body, larvae L3 wandering    3 fat body, white prepupae    23 fat body, pupae P8    7 carcass, larvae L3 wandering    7 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female  (35) ovary, mated 4-day female  (30) testis, mated 4-day male    6 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    17 central nervous system, pupae P8    23 head, virgin 1-day female    10 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    7 head, mated 1-day male    16 head, mated 4-day male    15 head, mated 20-day male    17 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae  (554) digestive system, larvae L3 wandering    39 digestive system, 1-day adult    21 digestive system, 4-day adult    15 digestive system, 20-day adult    18 fat body, larvae L3 wandering    3 fat body, white prepupae    23 fat body, pupae P8    7 carcass, larvae L3 wandering    7 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    35 ovary, mated 4-day female    30 testis, mated 4-day male    6 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    17 central nervous system, pupae P8    23 head, virgin 1-day female    10 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    7 head, mated 1-day male    16 head, mated 4-day male    15 head, mated 20-day male    17 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    554 digestive system, larvae L3 wandering    39 digestive system, 1-day adult    21 digestive system, 4-day adult    15 digestive system, 20-day adult    18 fat body, larvae L3 wandering    3 fat body, white prepupae    23 fat body, pupae P8    7 carcass, larvae L3 wandering    7 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    35 ovary, mated 4-day female    30 testis, mated 4-day male    6 accessory gland, mated 4-day male    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    17 central nervous system, pupae P8    23 head, virgin 1-day female    10 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    7 head, mated 1-day male    16 head, mated 4-day male    15 head, mated 20-day male    17 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    554 digestive system, larvae L3 wandering    39 digestive system, 1-day adult    21 digestive system, 4-day adult    15 digestive system, 20-day adult    18 fat body, larvae L3 wandering    3 fat body, white prepupae    23 fat body, pupae P8    7 carcass, larvae L3 wandering    7 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    35 ovary, mated 4-day female    30 testis, mated 4-day male    6 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    17 central nervous system, pupae P8    23 head, virgin 1-day female    10 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    7 head, mated 1-day male    16 head, mated 4-day male    15 head, mated 20-day male    17 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae  (554) digestive system, larvae L3 wandering  (39) digestive system, 1-day adult    21 digestive system, 4-day adult    15 digestive system, 20-day adult    18 fat body, larvae L3 wandering    3 fat body, white prepupae    23 fat body, pupae P8    7 carcass, larvae L3 wandering    7 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female  (35) ovary, mated 4-day female  30 testis, mated 4-day male    6 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    17 central nervous system, pupae P8    23 head, virgin 1-day female    10 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    7 head, mated 1-day male    16 head, mated 4-day male    15 head, mated 20-day male    17 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae  (554) digestive system, larvae L3 wandering    39 digestive system, 1-day adult    21 digestive system, 4-day adult    15 digestive system, 20-day adult    18 fat body, larvae L3 wandering    3 fat body, white prepupae    23 fat body, pupae P8    7 carcass, larvae L3 wandering    7 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    35 ovary, mated 4-day female    30 testis, mated 4-day male    6 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    17 central nervous system, pupae P8    23 head, virgin 1-day female    10 head, virgin 4-day female    12 head, virgin 20-day female    9 head, mated 1-day female    10 head, mated 4-day female    9 head, mated 20-day female    7 head, mated 1-day male    16 head, mated 4-day male    15 head, mated 20-day male    17 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    554 digestive system, larvae L3 wandering    39 digestive system, 1-day adult    21 digestive system, 4-day adult    15 digestive system, 20-day adult    18 fat body, larvae L3 wandering    3 fat body, white prepupae    23 fat body, pupae P8    7 carcass, larvae L3 wandering    7 carcass, 1-day adult    6 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    35 ovary, mated 4-day female    30 testis, mated 4-day male    6 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    7 embryo 04-06hr    19 embryo 06-08hr    48 embryo 08-10hr    49 embryo 10-12hr    34 embryo 12-14hr    19 embryo 14-16hr    16 embryo 16-18hr    18 embryo 18-20hr    17 embryo 20-22hr    11 embryo 22-24hr    13 larva L1    14 larva L2    9 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    23 white prepupae new    60 white prepupae 12hr    18 white prepupae 24hr    15 pupae 2d postWPP    13 pupae 3d postWPP    9 pupae 4d postWPP    14 adult male 01day    12 adult male 05day    11 adult male 30day    12 adult female 01day    26 adult female 05day    33 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (38) embryo 02-04hr    7 embryo 04-06hr    19 embryo 06-08hr  (48) embryo 08-10hr  (49) embryo 10-12hr  (34) embryo 12-14hr    19 embryo 14-16hr    16 embryo 16-18hr    18 embryo 18-20hr    17 embryo 20-22hr    11 embryo 22-24hr    13 larva L1    14 larva L2    9 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    23 white prepupae new  (60) white prepupae 12hr    18 white prepupae 24hr    15 pupae 2d postWPP    13 pupae 3d postWPP    9 pupae 4d postWPP    14 adult male 01day    12 adult male 05day    11 adult male 30day    12 adult female 01day  26 adult female 05day  (33) adult female 30day  (32) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    7 embryo 04-06hr    19 embryo 06-08hr    48 embryo 08-10hr    49 embryo 10-12hr    34 embryo 12-14hr    19 embryo 14-16hr    16 embryo 16-18hr    18 embryo 18-20hr    17 embryo 20-22hr    11 embryo 22-24hr    13 larva L1    14 larva L2    9 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    23 white prepupae new    60 white prepupae 12hr    18 white prepupae 24hr    15 pupae 2d postWPP    13 pupae 3d postWPP    9 pupae 4d postWPP    14 adult male 01day    12 adult male 05day    11 adult male 30day    12 adult female 01day    26 adult female 05day    33 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    7 embryo 04-06hr    19 embryo 06-08hr    48 embryo 08-10hr    49 embryo 10-12hr    34 embryo 12-14hr    19 embryo 14-16hr    16 embryo 16-18hr    18 embryo 18-20hr    17 embryo 20-22hr    11 embryo 22-24hr    13 larva L1    14 larva L2    9 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    23 white prepupae new    60 white prepupae 12hr    18 white prepupae 24hr    15 pupae 2d postWPP    13 pupae 3d postWPP    9 pupae 4d postWPP    14 adult male 01day    12 adult male 05day    11 adult male 30day    12 adult female 01day    26 adult female 05day    33 adult female 30day    32 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    7 embryo 04-06hr    19 embryo 06-08hr    48 embryo 08-10hr    49 embryo 10-12hr    34 embryo 12-14hr    19 embryo 14-16hr    16 embryo 16-18hr    18 embryo 18-20hr    17 embryo 20-22hr    11 embryo 22-24hr    13 larva L1    14 larva L2    9 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    23 white prepupae new    60 white prepupae 12hr    18 white prepupae 24hr    15 pupae 2d postWPP    13 pupae 3d postWPP    9 pupae 4d postWPP    14 adult male 01day    12 adult male 05day    11 adult male 30day    12 adult female 01day    26 adult female 05day    33 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (38) embryo 02-04hr    7 embryo 04-06hr    19 embryo 06-08hr  (48) embryo 08-10hr  (49) embryo 10-12hr  (34) embryo 12-14hr    19 embryo 14-16hr    16 embryo 16-18hr    18 embryo 18-20hr    17 embryo 20-22hr    11 embryo 22-24hr    13 larva L1    14 larva L2    9 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    23 white prepupae new  (60) white prepupae 12hr    18 white prepupae 24hr    15 pupae 2d postWPP    13 pupae 3d postWPP    9 pupae 4d postWPP    14 adult male 01day    12 adult male 05day    11 adult male 30day    12 adult female 01day  26 adult female 05day  (33) adult female 30day  32 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    7 embryo 04-06hr    19 embryo 06-08hr    48 embryo 08-10hr    49 embryo 10-12hr    34 embryo 12-14hr    19 embryo 14-16hr    16 embryo 16-18hr    18 embryo 18-20hr    17 embryo 20-22hr    11 embryo 22-24hr    13 larva L1    14 larva L2    9 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    23 white prepupae new    60 white prepupae 12hr    18 white prepupae 24hr    15 pupae 2d postWPP    13 pupae 3d postWPP    9 pupae 4d postWPP    14 adult male 01day    12 adult male 05day    11 adult male 30day    12 adult female 01day    26 adult female 05day    33 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    7 embryo 04-06hr    19 embryo 06-08hr    48 embryo 08-10hr    49 embryo 10-12hr    34 embryo 12-14hr    19 embryo 14-16hr    16 embryo 16-18hr    18 embryo 18-20hr    17 embryo 20-22hr    11 embryo 22-24hr    13 larva L1    14 larva L2    9 larva L3 12hr old    6 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    14 larva L3 puffstage 7-9    23 white prepupae new    60 white prepupae 12hr    18 white prepupae 24hr    15 pupae 2d postWPP    13 pupae 3d postWPP    9 pupae 4d postWPP    14 adult male 01day    12 adult male 05day    11 adult male 30day    12 adult female 01day    26 adult female 05day    33 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    53 Schneider line 2 Sg4    34 embryonic 1182-4H    45 embryonic GM2    46 embryonic Kc167    30 embryonic S1    37 embryonic S3    16 leg disc CME L1    40 wing disc CME-W2    30 wing disc ML-DmD8    27 wing disc ML-DmD9    46 wing disc ML-DmD16-c3    131 wing disc ML-DmD21    99 wing disc ML-DmD32    43 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    47 antennal disc ML-DmD20-c5    24 mixed discs ML-DmD4-c1    80 CNS ML-DmBG1-c1    89 CNS ML-DmBG2-c2    41 tumorous blood cells mbn2    61 ovary fGS/OSS    9 ovary OSC    2 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (53) Schneider line 2 Sg4  (34) embryonic 1182-4H  (45) embryonic GM2  (46) embryonic Kc167  (30) embryonic S1  (37) embryonic S3    16 leg disc CME L1  (40) wing disc CME-W2  (30) wing disc ML-DmD8  (27) wing disc ML-DmD9  (46) wing disc ML-DmD16-c3  (131) wing disc ML-DmD21  (99) wing disc ML-DmD32  (43) haltere disc ML-DmD17-c3  26 eye-antennal disc ML-DmD11  (47) antennal disc ML-DmD20-c5    24 mixed discs ML-DmD4-c1  (80) CNS ML-DmBG1-c1  (89) CNS ML-DmBG2-c2  (41) tumorous blood cells mbn2  (61) ovary fGS/OSS    9 ovary OSC    2 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    53 Schneider line 2 Sg4    34 embryonic 1182-4H    45 embryonic GM2    46 embryonic Kc167    30 embryonic S1    37 embryonic S3    16 leg disc CME L1    40 wing disc CME-W2    30 wing disc ML-DmD8    27 wing disc ML-DmD9    46 wing disc ML-DmD16-c3  (131) wing disc ML-DmD21    99 wing disc ML-DmD32    43 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    47 antennal disc ML-DmD20-c5    24 mixed discs ML-DmD4-c1    80 CNS ML-DmBG1-c1    89 CNS ML-DmBG2-c2    41 tumorous blood cells mbn2    61 ovary fGS/OSS    9 ovary OSC    2 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    53 Schneider line 2 Sg4    34 embryonic 1182-4H    45 embryonic GM2    46 embryonic Kc167    30 embryonic S1    37 embryonic S3    16 leg disc CME L1    40 wing disc CME-W2    30 wing disc ML-DmD8    27 wing disc ML-DmD9    46 wing disc ML-DmD16-c3    131 wing disc ML-DmD21    99 wing disc ML-DmD32    43 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    47 antennal disc ML-DmD20-c5    24 mixed discs ML-DmD4-c1    80 CNS ML-DmBG1-c1    89 CNS ML-DmBG2-c2    41 tumorous blood cells mbn2    61 ovary fGS/OSS    9 ovary OSC    2 ovary OSS    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    53 Schneider line 2 Sg4    34 embryonic 1182-4H    45 embryonic GM2    46 embryonic Kc167    30 embryonic S1    37 embryonic S3    16 leg disc CME L1    40 wing disc CME-W2    30 wing disc ML-DmD8    27 wing disc ML-DmD9    46 wing disc ML-DmD16-c3    131 wing disc ML-DmD21    99 wing disc ML-DmD32    43 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    47 antennal disc ML-DmD20-c5    24 mixed discs ML-DmD4-c1    80 CNS ML-DmBG1-c1    89 CNS ML-DmBG2-c2    41 tumorous blood cells mbn2    61 ovary fGS/OSS    9 ovary OSC    2 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (53) Schneider line 2 Sg4  (34) embryonic 1182-4H  (45) embryonic GM2  (46) embryonic Kc167  30 embryonic S1  (37) embryonic S3    16 leg disc CME L1  (40) wing disc CME-W2  30 wing disc ML-DmD8  27 wing disc ML-DmD9  (46) wing disc ML-DmD16-c3  (131) wing disc ML-DmD21  (99) wing disc ML-DmD32  (43) haltere disc ML-DmD17-c3  26 eye-antennal disc ML-DmD11  (47) antennal disc ML-DmD20-c5    24 mixed discs ML-DmD4-c1  (80) CNS ML-DmBG1-c1  (89) CNS ML-DmBG2-c2  (41) tumorous blood cells mbn2  (61) ovary fGS/OSS    9 ovary OSC    2 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    53 Schneider line 2 Sg4    34 embryonic 1182-4H    45 embryonic GM2    46 embryonic Kc167    30 embryonic S1    37 embryonic S3    16 leg disc CME L1    40 wing disc CME-W2    30 wing disc ML-DmD8    27 wing disc ML-DmD9    46 wing disc ML-DmD16-c3  131 wing disc ML-DmD21    99 wing disc ML-DmD32    43 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    47 antennal disc ML-DmD20-c5    24 mixed discs ML-DmD4-c1    80 CNS ML-DmBG1-c1    89 CNS ML-DmBG2-c2    41 tumorous blood cells mbn2    61 ovary fGS/OSS    9 ovary OSC    2 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    53 Schneider line 2 Sg4    34 embryonic 1182-4H    45 embryonic GM2    46 embryonic Kc167    30 embryonic S1    37 embryonic S3    16 leg disc CME L1    40 wing disc CME-W2    30 wing disc ML-DmD8    27 wing disc ML-DmD9    46 wing disc ML-DmD16-c3    131 wing disc ML-DmD21    99 wing disc ML-DmD32    43 haltere disc ML-DmD17-c3    26 eye-antennal disc ML-DmD11    47 antennal disc ML-DmD20-c5    24 mixed discs ML-DmD4-c1    80 CNS ML-DmBG1-c1    89 CNS ML-DmBG2-c2    41 tumorous blood cells mbn2    61 ovary fGS/OSS    9 ovary OSC    2 ovary OSS    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    85 cold shock, 4-day adult    75 heat shock, 4-day adult    20 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3    10 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    31 Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    50 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (85) cold shock, 4-day adult  (75) heat shock, 4-day adult    20 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3    10 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3  (31) Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3  (30) Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult  (50) Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    85 cold shock, 4-day adult    75 heat shock, 4-day adult    20 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3    10 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    31 Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    50 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    85 cold shock, 4-day adult    75 heat shock, 4-day adult    20 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3    10 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    31 Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    50 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    85 cold shock, 4-day adult    75 heat shock, 4-day adult    20 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3    10 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    31 Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    50 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (85) cold shock, 4-day adult  (75) heat shock, 4-day adult    20 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3    10 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3  31 Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3  30 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult  (50) Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    85 cold shock, 4-day adult    75 heat shock, 4-day adult    20 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3    10 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    31 Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    50 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    85 cold shock, 4-day adult    75 heat shock, 4-day adult    20 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3    10 Copper 15 mM 48 hrs, 4-day adult    18 Zinc 5 mM 12 hrs, larvae L3    31 Zinc 4.5 mM 48 hrs, 4-day adult    18 Ethanol 2.5% 3 hrs, larvae L3    30 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    50 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    9 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_27
External Data & Images
Linkouts	BDGP expression data • LD20186 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032078 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9520-RB FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for C1GalTA Stages(s) 1-3 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal (with C1GalTA2.1) C1GalTA30.1 lethal (with C1GalTA30.1) C1GalTA2.1 lethal | partially C1GalTAEY13370 lethal | pupal stage (with Df(2L)ED647) C1GalTA2.1 lethal | pupal stage (with Df(2L)Exel7040) C1GalTA2.1 lethal | pupal stage | recessive C1GalTA30.1 lethal | recessive C1GalTA2.1 partially lethal - majority die | pupal stage, with Scer\GAL4pnr-MD237 C1GalTAGD1019 viable C1GalTAKG02976 Sterility Allele fertile C1GalTAKG02976 Other Phenotypes Allele neuroanatomy defective | larval stage C1GalTA2.1 Phenotype manifest in Allele embryonic/larval brain C1GalTA2.1 leg C1GalTAEY13370 plasmatocyte C1GalTAEY13370 ventral nerve cord C1GalTA2.1
Classical Alleles ( 8 )
For All Classical Alleles Show
Allele of C1GalTA Class Mutagen Stocks Known lesion C1GalTA2.1 Delta2-3 4 Yes C1GalTAEY13370 P-element activity 2 Yes C1GalTAc01812 piggyBac transposase 1 -- C1GalTAd00121 1 -- C1GalTAKG02976 P-element activity 1 Yes C1GalTAMI05091 1 -- C1GalTA30.1 Delta2-3 0 Yes C1GalTAd01139 P-element activity 0 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of C1GalTA Class Mutagen Stocks Known lesion C1GalTAGD1019 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes C1GalTA+tLa in vitro construct - genomic fragment 1 Yes C1GalTAScer\UAS.cLa in vitro construct - regulatory fusion 1 Yes C1GalTAKK101417 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)ED647 (Lin et al., 2008) Df(2L)Exel7040 (Ryder, 2004.4.26, Lin et al., 2008) Df(2L)N22-14 (Lin et al., 2008)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{KK101417} NA P{UAS-C1GalTA.L} NA characterization construct P{C1GalTA+tLa} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}EP2046 NA P{EPgy2}C1GalTAEY13370 NA P{XP}C1GalTAd00121 NA P{XP}C1GalTAd01139 NA miscellaneous insertions Mi{MIC}C1GalTAMI05091 NA P{?SUPor-P}C1GalTA2.1 NA P{SUPor-P}C1GalTAKG02976 NA PBac{PB}C1GalTAc01812 NA
Gene Ontology: Function, Process & Cellular Component ( 7 unique terms )
Terms Based on Experimental Evidence ( 6 terms )
Molecular Function
CV term Evidence References
beta-1,3-galactosyltransferase activity inferred from direct assay (Mueller et al., 2005) glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity inferred from mutant phenotype (Yoshida et al., 2008)
Biological Process
CV term Evidence References
central nervous system morphogenesis inferred from mutant phenotype (Lin et al., 2008) glycolipid biosynthetic process inferred from direct assay (Mueller et al., 2005) O-glycan processing, core 1 inferred from mutant phenotype (Yoshida et al., 2008, Lin et al., 2008) protein glycosylation inferred from direct assay (Mueller et al., 2005)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity inferred from sequence or structural similarity with UniProtKB:Q9NS00 (assigned by UniProtKB) (UniProtKB Project Members, 2006.10.17)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
integral to membrane inferred from sequence or structural similarity with UniProtKB:Q9NS00 (assigned by UniProtKB) (UniProtKB Project Members, 2006.10.17)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions C1GalTA allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 60328 DroID - A comprehensive database of gene and protein interactions. • FBgn0032078 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34215
Orthologs
OrthoDB Orthologs (46) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6B8JZZ Dipteran inclusive ortholog search EOG666VVJ Insect inclusive ortholog search EOG602VNS Arthropod inclusive ortholog search EOG69KD63 Metazoa inclusive ortholog search EOG6VF2RW
Orthologs in Drosophila Species (EOG6B8JZZ)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\C1GalTA     Drosophila simulans   Dsim\GD22375 Y   Drosophila sechellia   Dsec\GM12650 Y   Drosophila erecta   Dere\GG24047 Y   Drosophila yakuba   Dyak\GE10709 Y   Drosophila ananassae   Dana\GF15693 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA21851 Y   Drosophila persimilis   Dper\GL25549 Y   Drosophila willistoni   Dwil\GK14790     Drosophila virilis   Dvir\GJ14135 Y   Drosophila mojavensis   Dmoj\GI12045 Y   Drosophila grimshawi   Dgri\GH25123 Y
Orthologs in non-Drosophila Dipterans (EOG666VVJ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL007560 Y Anopheles gambiae Malaria mosquito  Agam\AGAP009979 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ003116 Y
Orthologs in non-Dipteran Insects (EOG602VNS)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC409263 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG006428 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH11948 Y Atta cephalotes Leafcutter ant  Acep\ACEP23658 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO18327 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL20131 Y Linepithema humile Argentine ant  Lhum\LH24314 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB13997 Y Solenopsis invicta Red fire ant  Sinv\SINV16036 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI009340 Y Bombyx mori Silkmoth  Bmor\BGIBMGA014130 Y Pediculus humanus Human body louse  Phum\PHUM258020 Y Tribolium castaneum Red flour beetle  Tcas\TC030587 Y
Orthologs in non-Insect Arthropods (EOG69KD63)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Ixodes scapularis Deer tick  Isca\ISCW016807 Y
Orthologs in non-Arthropod Metazoa (EOG6VF2RW)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\C38H2.2 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_016302gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_020717gn Y Danio rerio Zebrafish  Drer\si:dkey-202e17.1 Y Danio rerio Zebrafish  Drer\c1galt1a Y Danio rerio Zebrafish  Drer\c1galt1b Y Danio rerio Zebrafish  Drer\ENSDARG00000074025 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000009666 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000006215 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000030129 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000032913 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000025171 Y Xenopus tropicalis Western clawed frog  Xtro\c1galt1 Y Gallus gallus Domestic chicken  Ggal\C1GALT1 Y Mus musculus House mouse  Mmus\C1galt1 Y Rattus norvegicus Norway rat  Rnor\C1galt1 Y Homo sapiens Human  Hsap\C1GALT1 Y
Human Orthologs (1)
Gene OMIM HGNC Hsap\C1GALT1
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD22375 Drosophila sechellia Dsec\GM12650 Drosophila erecta Dere\GG24047 Drosophila yakuba Dyak\GE10709 Drosophila ananassae Dana\GF15693 Drosophila pseudoobscura pseudoobscura Dpse\GA21851 Drosophila persimilis Dper\GL25549 Drosophila virilis Dvir\GJ14135 Drosophila mojavensis Dmoj\GI12045 Drosophila grimshawi Dgri\GH25123
Stocks & Reagents
Stocks Listed in FlyBase ( 13 )
Bloomington	38097 y1 w*; Mi{MIC}C1GalTAMI05091 13500 y1 w67c23; P{SUPor-P}C1GalTAKG02976 20876 y1 w67c23; P{EPgy2}C1GalTAEY13370/CyO 28834 w*; C1GalTA2.1/CyO, P{GAL4-twi.G}2.2, P{UAS-2xEGFP}AH2.2 28812 P{UAS-CG8708.L}1, w*; C1GalTA2.1/CyO, P{GAL4-twi.G}2.2, P{UAS-2xEGFP}AH2.2 28810 P{UAS-C1GalTA.L}7, w*; C1GalTA2.1/CyO, P{GAL4-twi.G}2.2, P{UAS-2xEGFP}AH2.2 28811 w*; C1GalTA2.1/CyO, P{GAL4-twi.G}2.2, P{UAS-2xEGFP}AH2.2; P{UAS-CG8708.L}14A 28807 w*; Df(2L)Exel7040/CyO, P{GAL4-twi.G}2.2, P{UAS-2xEGFP}AH2.2; P{C1GalTA+tLa}5-1
Harvard	- P{XP}C1GalTAd00121 - PBac{PB}C1GalTAc01812
VDRC	v2827 w1118 P{GD1019}v2827 v2826 w1118; P{GD1019}v2826
	More stocks available...
Genomic Clones ( 2 )
	BACR01O16 BACR05B09 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 79 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD20186
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	HL05644 LD20453 LD35443 RE34261 RE35120 RE39833 RE60574 SD04621 SD09621 SD09894 SD10475 SD10485 SD14043 SD15242
Other clones	20737 34517 58482 75237 82198 82347 522678 CK01.63D.D6 CK01.81D.E1 CK01.82B.E1 Dmel_dig_012024_0684_3122 EK064047 EK064313 EK064917 EK077705 EK145025 EK205138 EK215716 EP04546 LD20187 RM02656 RM02657 RM02658 RM02756 RM02757 RM02856 RM02857 RM02956 RM02957 RM03056 RM03158 RM03257 RM03356 RM03357 RM03358 RP01503 RP001000486 RP001006935 RP001007895 RP001008369 RP001009261 RP001012857 RP001016307 RP001016871 RP001019561 RP001021429 RP001022890 RP001023055 RP001023363 RP001023849 RP001025155 RP001035195 RP001035391 RP001040054 RP001040404 RP001044120 RP001045938 RP001046674 RP001048699 RP001052546 RP001054464 RP001054762 RP001055727 SD07079
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0032078 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34215
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: C1GalTA CG9520 (Lin et al., 2008)
Source for database merge of	Source for merge of: CG9520 anon-WO0144478.18 (FlyBase, 1996-)
Additional comments	Source for merge of CG9520 anon-WO0144478.18 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_135414 NM_164839 NM_164840 RefSeq (Proteins) • NP_609258 NP_723427 NP_723428 DDBJ / EMBL / GenBank • AA540971 AAF52723 AAF52724 AAF52725 AAL28831 AW942553 AX175176 AY061283 BH740800 CL943575 CZ467471 CZ467472 CZ472058 Entrez Gene - A searchable database of RefSeq genes. • 34215 UniProtKB/Swiss-Prot • Q7K237 UniProtKB/TrEMBL • E2QCQ7
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Fringe-like (IPR003378) C1GALT1 (IPR026842) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD20186
Linkouts
	BioGRID - A database of protein and genetic interactions • 60328 DroID - A comprehensive database of gene and protein interactions. • FBgn0032078 DRSC - Results from RNAi screens. • FBgn0032078 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032078 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9520-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0032078 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34215 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34215 modMine - Data generated by the modENCODE project. • FBgn0032078
Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym	anon-WO0144478.18   C1GALT1 (Castilho et al., 2012) C1GalTA (Lin et al., 2008, Irvine, 2009.9.21) CG9520 (Mueller et al., 2005, UniProtKB Project Members, 2006.10.17, Yoshida et al., 2008, Lin et al., 2008, Liu and Lehmann, 2008, Keleman et al., 2009.8.5) dC1β3GalT1 (Yoshida et al., 2008) unnamed (Ju et al., 2002)
Name Synonym	CG9520   Core 1 Galactosyltransferase A (Lin et al., 2008, ) core 1 β1,3-galactosyltransferase (Yoshida et al., 2008, Castilho et al., 2012)
Secondary FlyBase IDs
	FBgn0044521
References ( 26 )
Generate a list of	All references relating to this gene ( 26 )
List References by type	Research paper  ( 8 ) Supplementary material  ( 3 ) Personal communication to FlyBase  ( 8 ) Abstract  ( 1 ) FlyBase analysis  ( 3 ) Protein sequence record  ( 1 ) Website  ( 1 ) Patent  ( 1 )
Recent research papers ( 1 )
	Castilho et al., 2012, J. Biol. Chem. 287(43): 36518--36526 Engineering of Sialylated Mucin-type O-Glycosylation in Plants. [FBrf0219756] Show all research papers ...