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Gene Dmel\RfC3

General Information
Symbol	Dmel\RfC3	Species	D. melanogaster
Name	Replication factor C subunit 3	Annotation symbol	CG5313
Feature type	protein_coding_gene	FlyBase ID	FBgn0032244
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	31E1-31E1	Sequence location	2L:10,419,190..10,420,612 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Replication factor C subunit 3 is referred to in FlyBase by the symbol Dmel\RfC3 (CG5313, FBgn0032244). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: DNA binding. There is experimental evidence that it is involved in the biological process: lateral inhibition; neurogenesis. 3 alleles are reported. The phenotypes of these alleles are annotated with: trichogen cell; chaeta. It has one annotated transcript and one annotated polypeptide. Protein features are: AAA+ ATPase domain; ATPase, AAA-type, core; DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal; Replication factor C, C-terminal domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult ovary, adult male accessory gland. Comments on Affy2 ProbeSet: ProbeSet 1637166_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of RfC3. Gene sequence location is 2L:10419190..10420612.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 31E1-31E1   Limits computationally determined from genome sequence between P{lacW}RnrLk06709 and P{lacW}KdelRk00311
Experimentally Determined Cytological Location
Cytogenetic map Notes References 31E-31E     (Shi, 2000.3.22)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\RfC3 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.45
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) RfC3-RA FBtr0080019  NM_135555   1134   332
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein RfC3-PA   FBpp0079609   37.4   332   7.24     NP_609399   AAF52944
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • AAA+ ATPase domain (IPR003593) ATPase, AAA-type, core (IPR003959) DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (IPR008921) Replication factor C, C-terminal domain (IPR013748) P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014134 AAF52944   AF247499 AAF63387   AY119188 AAM51048   BG640309   BI141886   BP541721   BP559339   BP559340   CO324059   EC067248   EC246670   EC259171   EL882709   EL882710   EV583874
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VKW3
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
microtubule associated complex inferred from direct assay (Hughes et al., 2008)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult ovary, adult male accessory gland. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    178.525 Larval Midgut    23 Larval Hindgut    19.1 Larval Malpighian Tubules    17.4 Larval Fat Body    23.8 Larval Salivary Gland    68.1 Larval Trachea    75.675 Larval Carcass    44.325 Adult Head    20.4 Adult Eye    23.9 Adult Brain    30.5 Adult Thoracic-Abdominal Ganglion    40.5 Adult Crop    21.9 Adult Midgut    23.5 Adult Hindgut    18.1 Adult Malpighian Tubules    16.8 Adult Fat Body    11.2 Adult Salivary Gland    15.9 Adult Heart    16.55 Adult VirginFemale Spermatheca    18.9 Adult InseminatedFemale Spermatheca    21.9 Adult Ovary    291.8 Adult Testis    71.3 Adult Male Accessory Gland    100.2 Adult Carcass    16.1 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    178.525 Larval Midgut    23 Larval Hindgut    19.1 Larval Malpighian Tubules    17.4 Larval Fat Body    23.8 Larval Salivary Gland    68.1 Larval Trachea    75.675 Larval Carcass    44.325 Adult Head    20.4 Adult Eye    23.9 Adult Brain    30.5 Adult Thoracic-Abdominal Ganglion    40.5 Adult Crop    21.9 Adult Midgut    23.5 Adult Hindgut    18.1 Adult Malpighian Tubules    16.8 Adult Fat Body    11.2 Adult Salivary Gland    15.9 Adult Heart    16.55 Adult VirginFemale Spermatheca    18.9 Adult InseminatedFemale Spermatheca    21.9 Adult Ovary    291.8 Adult Testis    71.3 Adult Male Accessory Gland    100.2 Adult Carcass    16.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    178.525 Larval Midgut    23 Larval Hindgut    19.1 Larval Malpighian Tubules    17.4 Larval Fat Body    23.8 Larval Salivary Gland    68.1 Larval Trachea    75.675 Larval Carcass    44.325 Adult Head    20.4 Adult Eye    23.9 Adult Brain    30.5 Adult Thoracic-Abdominal Ganglion    40.5 Adult Crop    21.9 Adult Midgut    23.5 Adult Hindgut    18.1 Adult Malpighian Tubules    16.8 Adult Fat Body    11.2 Adult Salivary Gland    15.9 Adult Heart    16.55 Adult VirginFemale Spermatheca    18.9 Adult InseminatedFemale Spermatheca    21.9 Adult Ovary    291.8 Adult Testis    71.3 Adult Male Accessory Gland    100.2 Adult Carcass    16.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    178.525 Larval Midgut    23 Larval Hindgut    19.1 Larval Malpighian Tubules    17.4 Larval Fat Body    23.8 Larval Salivary Gland    68.1 Larval Trachea    75.675 Larval Carcass    44.325 Adult Head    20.4 Adult Eye    23.9 Adult Brain    30.5 Adult Thoracic-Abdominal Ganglion    40.5 Adult Crop    21.9 Adult Midgut    23.5 Adult Hindgut    18.1 Adult Malpighian Tubules    16.8 Adult Fat Body    11.2 Adult Salivary Gland    15.9 Adult Heart    16.55 Adult VirginFemale Spermatheca    18.9 Adult InseminatedFemale Spermatheca    21.9 Adult Ovary    291.8 Adult Testis    71.3 Adult Male Accessory Gland    100.2 Adult Carcass    16.1 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    178.525 Larval Midgut    23 Larval Hindgut    19.1 Larval Malpighian Tubules    17.4 Larval Fat Body    23.8 Larval Salivary Gland    68.1 Larval Trachea    75.675 Larval Carcass    44.325 Adult Head    20.4 Adult Eye    23.9 Adult Brain    30.5 Adult Thoracic-Abdominal Ganglion    40.5 Adult Crop    21.9 Adult Midgut    23.5 Adult Hindgut    18.1 Adult Malpighian Tubules    16.8 Adult Fat Body    11.2 Adult Salivary Gland    15.9 Adult Heart    16.55 Adult VirginFemale Spermatheca    18.9 Adult InseminatedFemale Spermatheca    21.9 Adult Ovary    291.8 Adult Testis    71.3 Adult Male Accessory Gland    100.2 Adult Carcass    16.1 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    178.525 Larval Midgut    23 Larval Hindgut    19.1 Larval Malpighian Tubules    17.4 Larval Fat Body    23.8 Larval Salivary Gland    68.1 Larval Trachea    75.675 Larval Carcass    44.325 Adult Head    20.4 Adult Eye    23.9 Adult Brain    30.5 Adult Thoracic-Abdominal Ganglion    40.5 Adult Crop    21.9 Adult Midgut    23.5 Adult Hindgut    18.1 Adult Malpighian Tubules    16.8 Adult Fat Body    11.2 Adult Salivary Gland    15.9 Adult Heart    16.55 Adult VirginFemale Spermatheca    18.9 Adult InseminatedFemale Spermatheca    21.9 Adult Ovary    291.8 Adult Testis    71.3 Adult Male Accessory Gland    100.2 Adult Carcass    16.1 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    178.525 Larval Midgut    23 Larval Hindgut    19.1 Larval Malpighian Tubules    17.4 Larval Fat Body    23.8 Larval Salivary Gland    68.1 Larval Trachea    75.675 Larval Carcass    44.325 Adult Head    20.4 Adult Eye    23.9 Adult Brain    30.5 Adult Thoracic-Abdominal Ganglion    40.5 Adult Crop    21.9 Adult Midgut    23.5 Adult Hindgut    18.1 Adult Malpighian Tubules    16.8 Adult Fat Body    11.2 Adult Salivary Gland    15.9 Adult Heart    16.55 Adult VirginFemale Spermatheca    18.9 Adult InseminatedFemale Spermatheca    21.9 Adult Ovary    291.8 Adult Testis    71.3 Adult Male Accessory Gland    100.2 Adult Carcass    16.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    178.525 Larval Midgut    23 Larval Hindgut    19.1 Larval Malpighian Tubules    17.4 Larval Fat Body    23.8 Larval Salivary Gland    68.1 Larval Trachea    75.675 Larval Carcass    44.325 Adult Head    20.4 Adult Eye    23.9 Adult Brain    30.5 Adult Thoracic-Abdominal Ganglion    40.5 Adult Crop    21.9 Adult Midgut    23.5 Adult Hindgut    18.1 Adult Malpighian Tubules    16.8 Adult Fat Body    11.2 Adult Salivary Gland    15.9 Adult Heart    16.55 Adult VirginFemale Spermatheca    18.9 Adult InseminatedFemale Spermatheca    21.9 Adult Ovary    291.8 Adult Testis    71.3 Adult Male Accessory Gland    100.2 Adult Carcass    16.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    20.4   NA  Eye    23.9   NA  Brain    30.5   178.525  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    40.5   NA  Crop    21.9   23  Midgut    no informative data   no informative data  Hindgut    no informative data   no informative data  Malpighian Tubules    no informative data   no informative data  Fat Body    no informative data   68.1  Salivary Gland    no informative data   NA  Heart    16.55   75.675  Trachea    NA   NA  VirginFemale Spermatheca    no informative data   NA  InseminatedFemale Spermatheca    21.9   NA  Ovary    291.8   NA  Testis    71.3   NA  Male Accessory Gland    100.2   44.325  Carcass    no informative data FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    8 central nervous system, pupae P8    2 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    2 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    1 ovary, virgin 4-day female    33 ovary, mated 4-day female    27 testis, mated 4-day male    6 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    8 central nervous system, pupae P8    2 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    2 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    1 ovary, virgin 4-day female  (33) ovary, mated 4-day female  (27) testis, mated 4-day male    6 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    8 central nervous system, pupae P8    2 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    2 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    1 ovary, virgin 4-day female    33 ovary, mated 4-day female    27 testis, mated 4-day male    6 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    8 central nervous system, pupae P8    2 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    2 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    1 ovary, virgin 4-day female    33 ovary, mated 4-day female    27 testis, mated 4-day male    6 accessory gland, mated 4-day male    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    8 central nervous system, pupae P8    2 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    2 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    1 ovary, virgin 4-day female    33 ovary, mated 4-day female    27 testis, mated 4-day male    6 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    8 central nervous system, pupae P8    2 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    2 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    1 ovary, virgin 4-day female  (33) ovary, mated 4-day female  27 testis, mated 4-day male    6 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    8 central nervous system, pupae P8    2 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    2 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    1 ovary, virgin 4-day female    33 ovary, mated 4-day female    27 testis, mated 4-day male    6 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    9 central nervous system, larvae L3    8 central nervous system, pupae P8    2 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    1 head, mated 4-day male    2 head, mated 20-day male    2 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    2 digestive system, 4-day adult    2 digestive system, 20-day adult    3 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    1 carcass, larvae L3 wandering    6 carcass, 1-day adult    1 carcass, 4-day adult    2 carcass, 20-day adult    1 ovary, virgin 4-day female    33 ovary, mated 4-day female    27 testis, mated 4-day male    6 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    19 embryo 04-06hr    50 embryo 06-08hr    25 embryo 08-10hr    14 embryo 10-12hr    8 embryo 12-14hr    5 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    2 larva L1    8 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    9 white prepupae new    7 white prepupae 12hr    14 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    4 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    5 adult male 30day    5 adult female 01day    12 adult female 05day    27 adult female 30day    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (42) embryo 02-04hr    19 embryo 04-06hr  (50) embryo 06-08hr    25 embryo 08-10hr    14 embryo 10-12hr    8 embryo 12-14hr    5 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    2 larva L1    8 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    9 white prepupae new    7 white prepupae 12hr    14 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    4 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    5 adult male 30day    5 adult female 01day    12 adult female 05day  (27) adult female 30day  (29) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    19 embryo 04-06hr    50 embryo 06-08hr    25 embryo 08-10hr    14 embryo 10-12hr    8 embryo 12-14hr    5 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    2 larva L1    8 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    9 white prepupae new    7 white prepupae 12hr    14 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    4 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    5 adult male 30day    5 adult female 01day    12 adult female 05day    27 adult female 30day    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    19 embryo 04-06hr    50 embryo 06-08hr    25 embryo 08-10hr    14 embryo 10-12hr    8 embryo 12-14hr    5 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    2 larva L1    8 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    9 white prepupae new    7 white prepupae 12hr    14 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    4 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    5 adult male 30day    5 adult female 01day    12 adult female 05day    27 adult female 30day    29 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    19 embryo 04-06hr    50 embryo 06-08hr    25 embryo 08-10hr    14 embryo 10-12hr    8 embryo 12-14hr    5 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    2 larva L1    8 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    9 white prepupae new    7 white prepupae 12hr    14 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    4 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    5 adult male 30day    5 adult female 01day    12 adult female 05day    27 adult female 30day    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (42) embryo 02-04hr    19 embryo 04-06hr  (50) embryo 06-08hr    25 embryo 08-10hr    14 embryo 10-12hr    8 embryo 12-14hr    5 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    2 larva L1    8 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    9 white prepupae new    7 white prepupae 12hr    14 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    4 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    5 adult male 30day    5 adult female 01day    12 adult female 05day  27 adult female 30day  29 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    19 embryo 04-06hr    50 embryo 06-08hr    25 embryo 08-10hr    14 embryo 10-12hr    8 embryo 12-14hr    5 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    2 larva L1    8 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    9 white prepupae new    7 white prepupae 12hr    14 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    4 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    5 adult male 30day    5 adult female 01day    12 adult female 05day    27 adult female 30day    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    19 embryo 04-06hr    50 embryo 06-08hr    25 embryo 08-10hr    14 embryo 10-12hr    8 embryo 12-14hr    5 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    2 embryo 20-22hr    2 embryo 22-24hr    2 larva L1    8 larva L2    6 larva L3 12hr old    6 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    9 white prepupae new    7 white prepupae 12hr    14 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    4 pupae 4d postWPP    3 adult male 01day    4 adult male 05day    5 adult male 30day    5 adult female 01day    12 adult female 05day    27 adult female 30day    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    38 Schneider line 2 Sg4    20 embryonic 1182-4H    15 embryonic GM2    16 embryonic Kc167    13 embryonic S1    23 embryonic S3    36 leg disc CME L1    14 wing disc CME-W2    35 wing disc ML-DmD8    16 wing disc ML-DmD9    19 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    32 wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    32 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2    30 tumorous blood cells mbn2    21 ovary fGS/OSS    8 ovary OSC    9 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (38) Schneider line 2 Sg4    20 embryonic 1182-4H    15 embryonic GM2    16 embryonic Kc167    13 embryonic S1    23 embryonic S3  (36) leg disc CME L1    14 wing disc CME-W2  (35) wing disc ML-DmD8    16 wing disc ML-DmD9    19 wing disc ML-DmD16-c3    11 wing disc ML-DmD21  (32) wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5  (32) mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2  (30) tumorous blood cells mbn2    21 ovary fGS/OSS    8 ovary OSC    9 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    38 Schneider line 2 Sg4    20 embryonic 1182-4H    15 embryonic GM2    16 embryonic Kc167    13 embryonic S1    23 embryonic S3    36 leg disc CME L1    14 wing disc CME-W2    35 wing disc ML-DmD8    16 wing disc ML-DmD9    19 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    32 wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    32 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2    30 tumorous blood cells mbn2    21 ovary fGS/OSS    8 ovary OSC    9 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    38 Schneider line 2 Sg4    20 embryonic 1182-4H    15 embryonic GM2    16 embryonic Kc167    13 embryonic S1    23 embryonic S3    36 leg disc CME L1    14 wing disc CME-W2    35 wing disc ML-DmD8    16 wing disc ML-DmD9    19 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    32 wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    32 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2    30 tumorous blood cells mbn2    21 ovary fGS/OSS    8 ovary OSC    9 ovary OSS    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    38 Schneider line 2 Sg4    20 embryonic 1182-4H    15 embryonic GM2    16 embryonic Kc167    13 embryonic S1    23 embryonic S3    36 leg disc CME L1    14 wing disc CME-W2    35 wing disc ML-DmD8    16 wing disc ML-DmD9    19 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    32 wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    32 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2    30 tumorous blood cells mbn2    21 ovary fGS/OSS    8 ovary OSC    9 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (38) Schneider line 2 Sg4    20 embryonic 1182-4H    15 embryonic GM2    16 embryonic Kc167    13 embryonic S1    23 embryonic S3  (36) leg disc CME L1    14 wing disc CME-W2  (35) wing disc ML-DmD8    16 wing disc ML-DmD9    19 wing disc ML-DmD16-c3    11 wing disc ML-DmD21  32 wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5  32 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2  30 tumorous blood cells mbn2    21 ovary fGS/OSS    8 ovary OSC    9 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    38 Schneider line 2 Sg4    20 embryonic 1182-4H    15 embryonic GM2    16 embryonic Kc167    13 embryonic S1    23 embryonic S3    36 leg disc CME L1    14 wing disc CME-W2    35 wing disc ML-DmD8    16 wing disc ML-DmD9    19 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    32 wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    32 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2    30 tumorous blood cells mbn2    21 ovary fGS/OSS    8 ovary OSC    9 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    38 Schneider line 2 Sg4    20 embryonic 1182-4H    15 embryonic GM2    16 embryonic Kc167    13 embryonic S1    23 embryonic S3    36 leg disc CME L1    14 wing disc CME-W2    35 wing disc ML-DmD8    16 wing disc ML-DmD9    19 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    32 wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    21 eye-antennal disc ML-DmD11    18 antennal disc ML-DmD20-c5    32 mixed discs ML-DmD4-c1    21 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2    30 tumorous blood cells mbn2    21 ovary fGS/OSS    8 ovary OSC    9 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    17 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    17 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    17 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    17 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    17 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    17 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    17 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    17 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    0 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    22 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    6 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_06 mE1_20_mRNA_expression_cluster_05
External Data & Images
Linkouts	BDGP expression data • SD11293 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032244 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5313-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal RfC3GD4599 viable, with Scer\GAL4pnr-MD237 RfC3GD4599 Other Phenotypes Allele neuroanatomy defective | larval stage RfC3GD4599 visible, with Scer\GAL4pnr-MD237 RfC3GD4599 Phenotype manifest in Allele chaeta, with Scer\GAL4pnr-MD237 RfC3GD4599 embryonic/larval neuroblast | larval stage RfC3GD4599 ganglion mother cell | larval stage RfC3GD4599 trichogen cell, with Scer\GAL4pnr-MD237 RfC3GD4599
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of RfC3 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of RfC3 Class Mutagen Stocks Known lesion RfC3GD4599 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes RfC3KK100666 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes RfC3NIG.5313R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD4599} NA P{KK100666} NA P{NIG.5313R} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 8 unique terms )
Terms Based on Experimental Evidence ( 3 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
lateral inhibition inferred from mutant phenotype (Mummery-Widmer et al., 2009) neurogenesis inferred from mutant phenotype (Neumüller et al., 2011)
Cellular Component
CV term Evidence References
microtubule associated complex inferred from direct assay (Hughes et al., 2008)
Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term Evidence References
ATP binding inferred from electronic annotation with InterPro:IPR003959, InterPro:IPR013748 (FlyBase Curators et al., 2004-) DNA binding inferred from sequence or structural similarity (Shi, 2000.3.22) inferred from sequence or structural similarity with Saccharomyces RFC3 (FlyBase, 1992-) nucleoside-triphosphatase activity inferred from electronic annotation with InterPro:IPR003593 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
DNA replication inferred from sequence or structural similarity (Shi, 2000.3.22) inferred from sequence or structural similarity with Saccharomyces RFC3 (FlyBase, 1992-)
Cellular Component
CV term Evidence References
DNA replication factor C complex inferred from sequence or structural similarity (Shi, 2000.3.22) inferred from sequence or structural similarity with Saccharomyces RFC3 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
RfC3 - Atx2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - CG10077 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - CG10306 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - CG13321 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - CG15047 experimental knowledge based (Guruharsha et al., 2011) RfC3 - CG16753 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - CG17601 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - CG1785 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - CG3165 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - CG3548 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) RfC3 - CG3817 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - CG4866 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - CG4951 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - CG5642 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - CG6652 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - CG6701 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - CG8142 experimental knowledge based (Guruharsha et al., 2011) RfC3 - CG9769 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - D1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - Gnf1 experimental knowledge based (Guruharsha et al., 2011) RfC3 - Hakai anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - Imp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - Int6 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - Irbp experimental knowledge based (Guruharsha et al., 2011) RfC3 - Ku80 experimental knowledge based (Guruharsha et al., 2011) RfC3 - Parp experimental knowledge based (Guruharsha et al., 2011) RfC3 - RPA2 experimental knowledge based (Guruharsha et al., 2011) RfC3 - RfC4 experimental knowledge based (Guruharsha et al., 2011) RfC3 - RpS19b anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - Rsf1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - TFAM experimental knowledge based (Guruharsha et al., 2011) RfC3 - Tango7 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - eIF3-S8 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - eIF4E-4 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - fs(1)h anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - hbn anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) RfC3 - mRpL4 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - mRpL43 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - mRpL52 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - mRpS24 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - mTerf3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - pUf68 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - ppan anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) RfC3 - ttk anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions RfC3 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 60505 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0032244 DroID - A comprehensive database of gene and protein interactions. • FBgn0032244 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34423
Orthologs
OrthoDB Orthologs (44) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG615H0G Dipteran inclusive ortholog search EOG66WZJ3 Insect inclusive ortholog search EOG63TXR6 Arthropod inclusive ortholog search EOG6STQM8 Metazoa inclusive ortholog search EOG679T1Q
Orthologs in Drosophila Species (EOG615H0G)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\RfC3     Drosophila simulans   Dsim\GD23698 Y   Drosophila sechellia   Dsec\GM18361 Y   Drosophila erecta   Dere\GG10129 Y   Drosophila yakuba   Dyak\GE18941 Y   Drosophila ananassae   Dana\GF15785 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA25212 Y   Drosophila persimilis   Dper\GL19009 Y   Drosophila willistoni   Dwil\GK15259 Y   Drosophila virilis   Dvir\GJ14606 Y   Drosophila mojavensis   Dmoj\GI18168 Y   Drosophila grimshawi   Dgri\GH13305 Y
Orthologs in non-Drosophila Dipterans (EOG66WZJ3)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL009465   Anopheles gambiae Malaria mosquito  Agam\AGAP005144
Orthologs in non-Dipteran Insects (EOG63TXR6)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC410266   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG020126   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH14608   Atta cephalotes Leafcutter ant  Acep\ACEP19095   Camponotus floridanus Florida carpenter ant  Cflo\CFLO20188   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL13375   Linepithema humile Argentine ant  Lhum\LH16623   Pogonomyrmex barbatus Red harvester ant  Pbar\PB15266   Solenopsis invicta Red fire ant  Sinv\SINV25753   Acyrthosiphon pisum Pea aphid  Apim\ACYPI007941   Pediculus humanus Human body louse  Phum\PHUM473490
Orthologs in non-Insect Arthropods (EOG6STQM8)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_202808   Ixodes scapularis Deer tick  Isca\ISCW022932
Orthologs in non-Arthropod Metazoa (EOG679T1Q)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\rfc-4 Y Caenorhabditis elegans Nematode  Cele\F44B9.8 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_020264gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_024308gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_023528gn Y Danio rerio Zebrafish  Drer\rfc5 Y Danio rerio Zebrafish  Drer\rfc4 Y Xenopus tropicalis Western clawed frog  Xtro\rfc4 Y Xenopus tropicalis Western clawed frog  Xtro\rfc5 Y Gallus gallus Domestic chicken  Ggal\RFC4 Y Mus musculus House mouse  Mmus\Rfc4 Y Mus musculus House mouse  Mmus\Rfc5 Y Rattus norvegicus Norway rat  Rnor\Rfc4 Y Rattus norvegicus Norway rat  Rnor\Rfc5 Y Rattus norvegicus Norway rat  Rnor\LOC367042 Y Homo sapiens Human  Hsap\RFC4 Y Homo sapiens Human  Hsap\RFC5 Y
Human Orthologs (2)
Gene OMIM HGNC Hsap\RFC4     Hsap\RFC5
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD23698 Drosophila sechellia Dsec\GM18361 Drosophila erecta Dere\GG10129 Drosophila yakuba Dyak\GE18941 Drosophila ananassae Dana\GF15785 Drosophila pseudoobscura pseudoobscura Dpse\GA25212 Drosophila persimilis Dper\GL19009 Drosophila willistoni Dwil\GK15259 Drosophila virilis Dvir\GJ14606 Drosophila mojavensis Dmoj\GI18168 Drosophila grimshawi Dgri\GH13305
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
VDRC	v108001 P{KK100666}VIE-260B v37761 w1118; P{GD4599}v37761 v37762 w1118; P{GD4599}v37762
Genomic Clones ( 2 )
	BACR34C10 BACR48K04 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 11 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	SD11293
Other clones	DPiM_SD11293
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	SD15852
Other clones	65241 181393 Dmel_dig_014837_0648_2785 EC259171 EK192434 FGC004F11 FGM320D01 IP12412
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0032244 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34423
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: RfC3 CG5313 (FlyBase, 1996-)
Source for database merge of
Additional comments	Source for identity of RfC3 CG5313 was sequence comparison (date:000414). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_135555 RefSeq (Proteins) • NP_609399 DDBJ / EMBL / GenBank • AAF52944 AAF63387 AAM51048 AF247499 AY119188 BG640309 Entrez Gene - A searchable database of RefSeq genes. • 34423 UniProtKB/TrEMBL • Q9VKW3
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • AAA+ ATPase domain (IPR003593) ATPase, AAA-type, core (IPR003959) DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (IPR008921) Replication factor C, C-terminal domain (IPR013748) P-loop containing nucleoside triphosphate hydrolase (IPR027417) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • SD11293
Linkouts
	BioGRID - A database of protein and genetic interactions • 60505 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0032244 DroID - A comprehensive database of gene and protein interactions. • FBgn0032244 DRSC - Results from RNAi screens. • FBgn0032244 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032244 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5313-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0032244 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34423 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34423 modMine - Data generated by the modENCODE project. • FBgn0032244
Synonyms & Secondary IDs ( 7 )
Reported As
Symbol Synonym	CG5313 (Krause et al., 2001, Keleman et al., 2009.8.5, Gandhi et al., 2007, Hughes et al., 2008) DmRFC3 (Krause et al., 2001) DRFC (Amin and Li, 2007) RfC3 (Cayirlioglu et al., 2003, Fisher et al., 2008, Davis et al., 2011, Érdi et al., 2012, Japanese National Institute of Genetics, 2012.5.21) Rfc3 (De Lucia et al., 2005)
Name Synonym	Drosophila replication factor C (Amin and Li, 2007) Replication factor C subunit 3   RfC3
Secondary FlyBase IDs
References ( 29 )
Generate a list of	All references relating to this gene ( 29 )
List References by type	Research paper  ( 10 ) Supplementary material  ( 7 ) Personal communication to FlyBase  ( 5 ) Abstract  ( 1 ) FlyBase analysis  ( 2 ) Stock list  ( 1 ) DNA/RNA sequence record  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 2 )
	Érdi et al., 2012, Autophagy 8(7): 1124--1135 Loss of the starvation-induced gene Rack1 leads to glycogen deficiency and impaired autophagic responses in Drosophila. [FBrf0219844] Davis et al., 2011, BMC Dev. Biol. 11: 66 Identification of common and cell type specific LXXLL motif EcR cofactors using a bioinformatics refined candidate RNAi screen in Drosophila melanogaster cell lines. [FBrf0216830] Show all research papers ...