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Gene Dmel\CG7456

General Information
Symbol	Dmel\CG7456	Species	D. melanogaster
Name		Annotation symbol	CG7456
Feature type	protein_coding_gene	FlyBase ID	FBgn0032258
Gene Model Status	Current	Stock availability	1 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	31F1-31F1	Sequence location	2L:10,485,538..10,488,622 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG7456 (FBgn0032258). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Conserved oligomeric Golgi complex, subunit 4. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-18 hour embryonic stages, at stages throughout the larval period, during early pupal stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval/adult salivary gland, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval trachea, adult female reproductive system, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1623203_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG7456. Gene sequence location is 2L:10485538..10488622.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 31F1-31F1   Limits computationally determined from genome sequence between P{lacW}KdelRk00311 and P{lacW}l(2)k09116k09116&P{lacW}Fatpk10307
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG7456 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.48
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG7456-RA FBtr0080038  NM_135569   2666   776
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG7456-PA   FBpp0079628   87.7   776   5.64     NP_609413   AAF52963
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Conserved oligomeric Golgi complex, subunit 4 (IPR013167)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA264843   AA802565   AA949002   AA949545   AA978587   AE014134 AAF52963   AI238982   AI388037   AI455806   AI513027   AI519462   AI531278   AW943292   AY058656 AAL13885   BG635224   BG637419   BG639543   BI237399   BI352980   BI356208   BI363552   BI364663   BI364692   BI369748   BI369971   BI482274   BI482399   BI484169   BI637505   BI638430   BP559599   BP559600   CK604230   CK604231   CK604565   CK604566   CO178851   CO314873   CO318005   CO326066   CO328982   CO337422   EC199832   EC225903   EC244257   EC257660   EC264292   GH752278   GH752394   GH753000   GH753968   GH754230   GH755131   GH760641   GH771986   GH772217   GH775990   GH776180   GH777703   GH782203   GH784891   GH786831   GH786906   GH787425   GH789796   GH790505   GH792243   GH792302   GH792688   GH795330   GH797364   GH800672   GH801221   GH806690   GH807165   GH810999   GH812229   GH813595   GH815377   GH816056   GH825402   GH826357   GH833362   GH833725   GH834716   GH836239   GH837962   GH840490   GH840864   GH847306   GH848985   GH849982   GH854672   GH858551   GH860883   GH861332   GH862915   GH865349   GH867877   GH868841   GH873493   GH883518   GH883692   GH888864   GH891222   GH893304   GH894240   GH896418   GH899583   GH901188   GH901657   GH902002   GH905380   GH907148   GH910889   GH913223   GH920352   GH921618   GH921795   GH922714   GH927403   GH928854   GH929911   GH931145   GH932242   GH934337   GH937227   GH938758
UniProtKB/Swiss-Prot	Q95TN4
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   anlage in statu nascendi   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) salivary gland body primordium   (Fisher et al., 2012) somatic muscle primordium   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic dorsal epidermis   (Fisher et al., 2012) embryonic ventral epidermis   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval salivary gland   (Fisher et al., 2012) embryonic/larval salivary gland body   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval/adult salivary gland, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval trachea, adult female reproductive system, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    168.5 Larval Midgut    116.1 Larval Hindgut    212.8 Larval Malpighian Tubules    231.7 Larval Fat Body    137.6 Larval Salivary Gland    956.6 Larval Trachea    252.25 Larval Carcass    155.975 Adult Head    137.4 Adult Eye    168.575 Adult Brain    169.6 Adult Thoracic-Abdominal Ganglion    199.6 Adult Crop    161.1 Adult Midgut    131 Adult Hindgut    144.8 Adult Malpighian Tubules    257.4 Adult Fat Body    91 Adult Salivary Gland    746.3 Adult Heart    122.2 Adult VirginFemale Spermatheca    199.4 Adult InseminatedFemale Spermatheca    242.5 Adult Ovary    234.2 Adult Testis    73.2 Adult Male Accessory Gland    1034.7 Adult Carcass    83.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    168.5 Larval Midgut    116.1 Larval Hindgut    212.8 Larval Malpighian Tubules    231.7 Larval Fat Body    137.6 Larval Salivary Gland  (956.6) Larval Trachea    252.25 Larval Carcass    155.975 Adult Head    137.4 Adult Eye    168.575 Adult Brain    169.6 Adult Thoracic-Abdominal Ganglion    199.6 Adult Crop    161.1 Adult Midgut    131 Adult Hindgut    144.8 Adult Malpighian Tubules    257.4 Adult Fat Body    91 Adult Salivary Gland  (746.3) Adult Heart    122.2 Adult VirginFemale Spermatheca    199.4 Adult InseminatedFemale Spermatheca    242.5 Adult Ovary    234.2 Adult Testis    73.2 Adult Male Accessory Gland  (1034.7) Adult Carcass    83.8 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    168.5 Larval Midgut    116.1 Larval Hindgut    212.8 Larval Malpighian Tubules    231.7 Larval Fat Body    137.6 Larval Salivary Gland    956.6 Larval Trachea    252.25 Larval Carcass    155.975 Adult Head    137.4 Adult Eye    168.575 Adult Brain    169.6 Adult Thoracic-Abdominal Ganglion    199.6 Adult Crop    161.1 Adult Midgut    131 Adult Hindgut    144.8 Adult Malpighian Tubules    257.4 Adult Fat Body    91 Adult Salivary Gland    746.3 Adult Heart    122.2 Adult VirginFemale Spermatheca    199.4 Adult InseminatedFemale Spermatheca    242.5 Adult Ovary    234.2 Adult Testis    73.2 Adult Male Accessory Gland  1034.7 Adult Carcass    83.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    168.5 Larval Midgut    116.1 Larval Hindgut    212.8 Larval Malpighian Tubules    231.7 Larval Fat Body    137.6 Larval Salivary Gland    956.6 Larval Trachea    252.25 Larval Carcass    155.975 Adult Head    137.4 Adult Eye    168.575 Adult Brain    169.6 Adult Thoracic-Abdominal Ganglion    199.6 Adult Crop    161.1 Adult Midgut    131 Adult Hindgut    144.8 Adult Malpighian Tubules    257.4 Adult Fat Body    91 Adult Salivary Gland    746.3 Adult Heart    122.2 Adult VirginFemale Spermatheca    199.4 Adult InseminatedFemale Spermatheca    242.5 Adult Ovary    234.2 Adult Testis    73.2 Adult Male Accessory Gland    1034.7 Adult Carcass    83.8 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    168.5 Larval Midgut    116.1 Larval Hindgut    212.8 Larval Malpighian Tubules    231.7 Larval Fat Body    137.6 Larval Salivary Gland    956.6 Larval Trachea    252.25 Larval Carcass    155.975 Adult Head    137.4 Adult Eye    168.575 Adult Brain    169.6 Adult Thoracic-Abdominal Ganglion    199.6 Adult Crop    161.1 Adult Midgut    131 Adult Hindgut    144.8 Adult Malpighian Tubules    257.4 Adult Fat Body    91 Adult Salivary Gland    746.3 Adult Heart    122.2 Adult VirginFemale Spermatheca    199.4 Adult InseminatedFemale Spermatheca    242.5 Adult Ovary    234.2 Adult Testis    73.2 Adult Male Accessory Gland    1034.7 Adult Carcass    83.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    168.5 Larval Midgut    116.1 Larval Hindgut    212.8 Larval Malpighian Tubules    231.7 Larval Fat Body    137.6 Larval Salivary Gland  (956.6) Larval Trachea    252.25 Larval Carcass    155.975 Adult Head    137.4 Adult Eye    168.575 Adult Brain    169.6 Adult Thoracic-Abdominal Ganglion    199.6 Adult Crop    161.1 Adult Midgut    131 Adult Hindgut    144.8 Adult Malpighian Tubules    257.4 Adult Fat Body    91 Adult Salivary Gland  746.3 Adult Heart    122.2 Adult VirginFemale Spermatheca    199.4 Adult InseminatedFemale Spermatheca    242.5 Adult Ovary    234.2 Adult Testis    73.2 Adult Male Accessory Gland  (1034.7) Adult Carcass    83.8 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    168.5 Larval Midgut    116.1 Larval Hindgut    212.8 Larval Malpighian Tubules    231.7 Larval Fat Body    137.6 Larval Salivary Gland    956.6 Larval Trachea    252.25 Larval Carcass    155.975 Adult Head    137.4 Adult Eye    168.575 Adult Brain    169.6 Adult Thoracic-Abdominal Ganglion    199.6 Adult Crop    161.1 Adult Midgut    131 Adult Hindgut    144.8 Adult Malpighian Tubules    257.4 Adult Fat Body    91 Adult Salivary Gland    746.3 Adult Heart    122.2 Adult VirginFemale Spermatheca    199.4 Adult InseminatedFemale Spermatheca    242.5 Adult Ovary    234.2 Adult Testis    73.2 Adult Male Accessory Gland  1034.7 Adult Carcass    83.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    168.5 Larval Midgut    116.1 Larval Hindgut    212.8 Larval Malpighian Tubules    231.7 Larval Fat Body    137.6 Larval Salivary Gland    956.6 Larval Trachea    252.25 Larval Carcass    155.975 Adult Head    137.4 Adult Eye    168.575 Adult Brain    169.6 Adult Thoracic-Abdominal Ganglion    199.6 Adult Crop    161.1 Adult Midgut    131 Adult Hindgut    144.8 Adult Malpighian Tubules    257.4 Adult Fat Body    91 Adult Salivary Gland    746.3 Adult Heart    122.2 Adult VirginFemale Spermatheca    199.4 Adult InseminatedFemale Spermatheca    242.5 Adult Ovary    234.2 Adult Testis    73.2 Adult Male Accessory Gland    1034.7 Adult Carcass    83.8 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    137.4   NA  Eye    168.575   NA  Brain    169.6   168.5  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    199.6   NA  Crop    161.1   116.1  Midgut    131   212.8  Hindgut    144.8   231.7  Malpighian Tubules    257.4   137.6  Fat Body    91   956.6  Salivary Gland    746.3   NA  Heart    122.2   252.25  Trachea    NA   NA  VirginFemale Spermatheca    199.4   NA  InseminatedFemale Spermatheca    242.5   NA  Ovary    234.2   NA  Testis    73.2   NA  Male Accessory Gland    1034.7   155.975  Carcass    83.8 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    16 central nervous system, pupae P8    14 head, virgin 1-day female    12 head, virgin 4-day female    7 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    10 head, mated 4-day male    12 head, mated 20-day male    19 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    19 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    11 fat body, larvae L3 wandering    6 fat body, white prepupae    8 fat body, pupae P8    16 carcass, larvae L3 wandering    14 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female    26 ovary, mated 4-day female    17 testis, mated 4-day male    14 accessory gland, mated 4-day male    26 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    16 central nervous system, pupae P8    14 head, virgin 1-day female    12 head, virgin 4-day female    7 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    10 head, mated 4-day male    12 head, mated 20-day male    19 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    19 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    11 fat body, larvae L3 wandering    6 fat body, white prepupae    8 fat body, pupae P8    16 carcass, larvae L3 wandering    14 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female  26 ovary, mated 4-day female    17 testis, mated 4-day male    14 accessory gland, mated 4-day male  26 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    16 central nervous system, pupae P8    14 head, virgin 1-day female    12 head, virgin 4-day female    7 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    10 head, mated 4-day male    12 head, mated 20-day male    19 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    19 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    11 fat body, larvae L3 wandering    6 fat body, white prepupae    8 fat body, pupae P8    16 carcass, larvae L3 wandering    14 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female    26 ovary, mated 4-day female    17 testis, mated 4-day male    14 accessory gland, mated 4-day male    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    16 central nervous system, pupae P8    14 head, virgin 1-day female    12 head, virgin 4-day female    7 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    10 head, mated 4-day male    12 head, mated 20-day male    19 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    19 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    11 fat body, larvae L3 wandering    6 fat body, white prepupae    8 fat body, pupae P8    16 carcass, larvae L3 wandering    14 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female    26 ovary, mated 4-day female    17 testis, mated 4-day male    14 accessory gland, mated 4-day male    26 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    16 central nervous system, pupae P8    14 head, virgin 1-day female    12 head, virgin 4-day female    7 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    10 head, mated 4-day male    12 head, mated 20-day male    19 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    19 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    11 fat body, larvae L3 wandering    6 fat body, white prepupae    8 fat body, pupae P8    16 carcass, larvae L3 wandering    14 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female    26 ovary, mated 4-day female    17 testis, mated 4-day male    14 accessory gland, mated 4-day male    26 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    16 central nervous system, pupae P8    14 head, virgin 1-day female    12 head, virgin 4-day female    7 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    10 head, mated 4-day male    12 head, mated 20-day male    19 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    19 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    11 fat body, larvae L3 wandering    6 fat body, white prepupae    8 fat body, pupae P8    16 carcass, larvae L3 wandering    14 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female  26 ovary, mated 4-day female    17 testis, mated 4-day male    14 accessory gland, mated 4-day male  26 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    16 central nervous system, pupae P8    14 head, virgin 1-day female    12 head, virgin 4-day female    7 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    10 head, mated 4-day male    12 head, mated 20-day male    19 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    19 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    11 fat body, larvae L3 wandering    6 fat body, white prepupae    8 fat body, pupae P8    16 carcass, larvae L3 wandering    14 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female    26 ovary, mated 4-day female    17 testis, mated 4-day male    14 accessory gland, mated 4-day male    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    13 central nervous system, larvae L3    16 central nervous system, pupae P8    14 head, virgin 1-day female    12 head, virgin 4-day female    7 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    10 head, mated 4-day male    12 head, mated 20-day male    19 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    19 digestive system, larvae L3 wandering    14 digestive system, 1-day adult    12 digestive system, 4-day adult    10 digestive system, 20-day adult    11 fat body, larvae L3 wandering    6 fat body, white prepupae    8 fat body, pupae P8    16 carcass, larvae L3 wandering    14 carcass, 1-day adult    7 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female    26 ovary, mated 4-day female    17 testis, mated 4-day male    14 accessory gland, mated 4-day male    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-18 hour embryonic stages, at stages throughout the larval period, during early pupal stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    27 embryo 04-06hr    11 embryo 06-08hr    24 embryo 08-10hr    36 embryo 10-12hr    40 embryo 12-14hr    30 embryo 14-16hr    20 embryo 16-18hr    16 embryo 18-20hr    12 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    12 larva L2    19 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    20 white prepupae new    20 white prepupae 12hr    15 white prepupae 24hr    20 pupae 2d postWPP    18 pupae 3d postWPP    13 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    18 adult male 30day    18 adult female 01day    18 adult female 05day    24 adult female 30day    25 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (29) embryo 02-04hr  (27) embryo 04-06hr    11 embryo 06-08hr    24 embryo 08-10hr  (36) embryo 10-12hr  (40) embryo 12-14hr  (30) embryo 14-16hr    20 embryo 16-18hr    16 embryo 18-20hr    12 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    12 larva L2    19 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    20 white prepupae new    20 white prepupae 12hr    15 white prepupae 24hr    20 pupae 2d postWPP    18 pupae 3d postWPP    13 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    18 adult male 30day    18 adult female 01day    18 adult female 05day    24 adult female 30day    25 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    27 embryo 04-06hr    11 embryo 06-08hr    24 embryo 08-10hr    36 embryo 10-12hr    40 embryo 12-14hr    30 embryo 14-16hr    20 embryo 16-18hr    16 embryo 18-20hr    12 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    12 larva L2    19 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    20 white prepupae new    20 white prepupae 12hr    15 white prepupae 24hr    20 pupae 2d postWPP    18 pupae 3d postWPP    13 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    18 adult male 30day    18 adult female 01day    18 adult female 05day    24 adult female 30day    25 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    27 embryo 04-06hr    11 embryo 06-08hr    24 embryo 08-10hr    36 embryo 10-12hr    40 embryo 12-14hr    30 embryo 14-16hr    20 embryo 16-18hr    16 embryo 18-20hr    12 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    12 larva L2    19 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    20 white prepupae new    20 white prepupae 12hr    15 white prepupae 24hr    20 pupae 2d postWPP    18 pupae 3d postWPP    13 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    18 adult male 30day    18 adult female 01day    18 adult female 05day    24 adult female 30day    25 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    27 embryo 04-06hr    11 embryo 06-08hr    24 embryo 08-10hr    36 embryo 10-12hr    40 embryo 12-14hr    30 embryo 14-16hr    20 embryo 16-18hr    16 embryo 18-20hr    12 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    12 larva L2    19 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    20 white prepupae new    20 white prepupae 12hr    15 white prepupae 24hr    20 pupae 2d postWPP    18 pupae 3d postWPP    13 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    18 adult male 30day    18 adult female 01day    18 adult female 05day    24 adult female 30day    25 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  29 embryo 02-04hr  27 embryo 04-06hr    11 embryo 06-08hr    24 embryo 08-10hr  (36) embryo 10-12hr  (40) embryo 12-14hr  30 embryo 14-16hr    20 embryo 16-18hr    16 embryo 18-20hr    12 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    12 larva L2    19 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    20 white prepupae new    20 white prepupae 12hr    15 white prepupae 24hr    20 pupae 2d postWPP    18 pupae 3d postWPP    13 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    18 adult male 30day    18 adult female 01day    18 adult female 05day    24 adult female 30day    25 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    27 embryo 04-06hr    11 embryo 06-08hr    24 embryo 08-10hr    36 embryo 10-12hr    40 embryo 12-14hr    30 embryo 14-16hr    20 embryo 16-18hr    16 embryo 18-20hr    12 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    12 larva L2    19 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    20 white prepupae new    20 white prepupae 12hr    15 white prepupae 24hr    20 pupae 2d postWPP    18 pupae 3d postWPP    13 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    18 adult male 30day    18 adult female 01day    18 adult female 05day    24 adult female 30day    25 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    27 embryo 04-06hr    11 embryo 06-08hr    24 embryo 08-10hr    36 embryo 10-12hr    40 embryo 12-14hr    30 embryo 14-16hr    20 embryo 16-18hr    16 embryo 18-20hr    12 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    12 larva L2    19 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    20 white prepupae new    20 white prepupae 12hr    15 white prepupae 24hr    20 pupae 2d postWPP    18 pupae 3d postWPP    13 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    18 adult male 30day    18 adult female 01day    18 adult female 05day    24 adult female 30day    25 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    65 Schneider line 2 Sg4    63 embryonic 1182-4H    45 embryonic GM2    50 embryonic Kc167    52 embryonic S1    60 embryonic S3    61 leg disc CME L1    49 wing disc CME-W2    43 wing disc ML-DmD8    40 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    36 wing disc ML-DmD21    67 wing disc ML-DmD32    36 haltere disc ML-DmD17-c3    51 eye-antennal disc ML-DmD11    40 antennal disc ML-DmD20-c5    53 mixed discs ML-DmD4-c1    37 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    48 ovary fGS/OSS    29 ovary OSC    29 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (65) Schneider line 2 Sg4  (63) embryonic 1182-4H  (45) embryonic GM2  (50) embryonic Kc167  (52) embryonic S1  (60) embryonic S3  (61) leg disc CME L1  (49) wing disc CME-W2  (43) wing disc ML-DmD8  (40) wing disc ML-DmD9  (38) wing disc ML-DmD16-c3  (36) wing disc ML-DmD21  (67) wing disc ML-DmD32  (36) haltere disc ML-DmD17-c3  (51) eye-antennal disc ML-DmD11  (40) antennal disc ML-DmD20-c5  (53) mixed discs ML-DmD4-c1  (37) CNS ML-DmBG1-c1  (44) CNS ML-DmBG2-c2  (68) tumorous blood cells mbn2  (48) ovary fGS/OSS  (29) ovary OSC  (29) ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    65 Schneider line 2 Sg4    63 embryonic 1182-4H    45 embryonic GM2    50 embryonic Kc167    52 embryonic S1    60 embryonic S3    61 leg disc CME L1    49 wing disc CME-W2    43 wing disc ML-DmD8    40 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    36 wing disc ML-DmD21    67 wing disc ML-DmD32    36 haltere disc ML-DmD17-c3    51 eye-antennal disc ML-DmD11    40 antennal disc ML-DmD20-c5    53 mixed discs ML-DmD4-c1    37 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    48 ovary fGS/OSS    29 ovary OSC    29 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    65 Schneider line 2 Sg4    63 embryonic 1182-4H    45 embryonic GM2    50 embryonic Kc167    52 embryonic S1    60 embryonic S3    61 leg disc CME L1    49 wing disc CME-W2    43 wing disc ML-DmD8    40 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    36 wing disc ML-DmD21    67 wing disc ML-DmD32    36 haltere disc ML-DmD17-c3    51 eye-antennal disc ML-DmD11    40 antennal disc ML-DmD20-c5    53 mixed discs ML-DmD4-c1    37 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    48 ovary fGS/OSS    29 ovary OSC    29 ovary OSS    11 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    65 Schneider line 2 Sg4    63 embryonic 1182-4H    45 embryonic GM2    50 embryonic Kc167    52 embryonic S1    60 embryonic S3    61 leg disc CME L1    49 wing disc CME-W2    43 wing disc ML-DmD8    40 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    36 wing disc ML-DmD21    67 wing disc ML-DmD32    36 haltere disc ML-DmD17-c3    51 eye-antennal disc ML-DmD11    40 antennal disc ML-DmD20-c5    53 mixed discs ML-DmD4-c1    37 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    48 ovary fGS/OSS    29 ovary OSC    29 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (65) Schneider line 2 Sg4  (63) embryonic 1182-4H  (45) embryonic GM2  (50) embryonic Kc167  (52) embryonic S1  (60) embryonic S3  (61) leg disc CME L1  (49) wing disc CME-W2  (43) wing disc ML-DmD8  (40) wing disc ML-DmD9  (38) wing disc ML-DmD16-c3  (36) wing disc ML-DmD21  (67) wing disc ML-DmD32  (36) haltere disc ML-DmD17-c3  (51) eye-antennal disc ML-DmD11  (40) antennal disc ML-DmD20-c5  (53) mixed discs ML-DmD4-c1  (37) CNS ML-DmBG1-c1  (44) CNS ML-DmBG2-c2  (68) tumorous blood cells mbn2  (48) ovary fGS/OSS  29 ovary OSC  29 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    65 Schneider line 2 Sg4    63 embryonic 1182-4H    45 embryonic GM2    50 embryonic Kc167    52 embryonic S1    60 embryonic S3    61 leg disc CME L1    49 wing disc CME-W2    43 wing disc ML-DmD8    40 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    36 wing disc ML-DmD21    67 wing disc ML-DmD32    36 haltere disc ML-DmD17-c3    51 eye-antennal disc ML-DmD11    40 antennal disc ML-DmD20-c5    53 mixed discs ML-DmD4-c1    37 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    48 ovary fGS/OSS    29 ovary OSC    29 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    65 Schneider line 2 Sg4    63 embryonic 1182-4H    45 embryonic GM2    50 embryonic Kc167    52 embryonic S1    60 embryonic S3    61 leg disc CME L1    49 wing disc CME-W2    43 wing disc ML-DmD8    40 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    36 wing disc ML-DmD21    67 wing disc ML-DmD32    36 haltere disc ML-DmD17-c3    51 eye-antennal disc ML-DmD11    40 antennal disc ML-DmD20-c5    53 mixed discs ML-DmD4-c1    37 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    68 tumorous blood cells mbn2    48 ovary fGS/OSS    29 ovary OSC    29 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    5 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    5 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    5 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    5 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    5 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    5 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    5 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    5 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    15 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    14 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    16 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    13 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    16 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    14 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_03 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	BDGP expression data • LD35507 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032258 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7456-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG7456 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG7456 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG7456 Class Mutagen Stocks Known lesion CG7456JF03049 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG7456GD12244 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes CG7456NIG.7456R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel7048 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD12244} NA P{NIG.7456R} NA P{TRiP.JF03049} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap P{lacW}l(2)SH0609SH0609 No
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG7456 - CG12241 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) CG7456 - CG15098 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7456 - CG1532 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7456 - CG3511 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) CG7456 - CG43444 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7456 - CG5002 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7456 - Nup214 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7456 - Rbp1-like anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7456 - RpL7-like anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7456 - SmD3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7456 - eIF2B-γ anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7456 - eIF2B-ε anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7456 - mbo anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7456 - sw anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG7456 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 60522 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0032258 DroID - A comprehensive database of gene and protein interactions. • FBgn0032258 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34442
Orthologs
OrthoDB Orthologs (41) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6614PG Dipteran inclusive ortholog search EOG6JWVNM Insect inclusive ortholog search EOG6VDNVP Arthropod inclusive ortholog search EOG6MSBF9 Metazoa inclusive ortholog search EOG66QKN1
Orthologs in Drosophila Species (EOG6614PG)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG7456     Drosophila simulans   Dsim\GD22250 Y   Drosophila sechellia   Dsec\GM11647 Y   Drosophila erecta   Dere\GG10382 Y   Drosophila yakuba   Dyak\GE13582 Y   Drosophila ananassae   Dana\GF14092 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA20365 Y   Drosophila persimilis   Dper\GL19016 Y   Drosophila willistoni   Dwil\GK15251 Y   Drosophila virilis   Dvir\GJ14587 Y   Drosophila mojavensis   Dmoj\GI18160 Y   Drosophila grimshawi   Dgri\GH13296 Y
Orthologs in non-Drosophila Dipterans (EOG6JWVNM)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL005794   Aedes aegypti Yellow fever mosquito  Aaeg\AAEL010135   Anopheles gambiae Malaria mosquito  Agam\AGAP008875   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ802268
Orthologs in non-Dipteran Insects (EOG6VDNVP)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC411125   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG003823   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH11380   Atta cephalotes Leafcutter ant  Acep\ACEP16036   Camponotus floridanus Florida carpenter ant  Cflo\CFLO19996   Camponotus floridanus Florida carpenter ant  Cflo\CFLO19980   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL14958   Linepithema humile Argentine ant  Lhum\LH18562   Pogonomyrmex barbatus Red harvester ant  Pbar\PB17766   Solenopsis invicta Red fire ant  Sinv\SINV10918   Acyrthosiphon pisum Pea aphid  Apim\ACYPI009975   Bombyx mori Silkmoth  Bmor\BGIBMGA006072   Pediculus humanus Human body louse  Phum\PHUM529330   Tribolium castaneum Red flour beetle  Tcas\TC013064
Orthologs in non-Insect Arthropods (EOG6MSBF9)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\COI   Ixodes scapularis Deer tick  Isca\ISCW011879
Orthologs in non-Arthropod Metazoa (EOG66QKN1)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\cogc-4   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_003524gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_026357gn   Danio rerio Zebrafish  Drer\zgc:136860   Xenopus tropicalis Western clawed frog  Xtro\cog4   Gallus gallus Domestic chicken  Ggal\COG4   Mus musculus House mouse  Mmus\Cog4   Rattus norvegicus Norway rat  Rnor\Cog4   Homo sapiens Human  Hsap\ENSG00000103051
Human Orthologs (1)
Gene OMIM HGNC Hsap\ENSG00000103051
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD22250 Drosophila sechellia Dsec\GM11647 Drosophila erecta Dere\GG10382 Drosophila yakuba Dyak\GE13582 Drosophila ananassae Dana\GF14092 Drosophila pseudoobscura pseudoobscura Dpse\GA20365 Drosophila persimilis Dper\GL19016 Drosophila willistoni Dwil\GK15251 Drosophila virilis Dvir\GJ14587 Drosophila mojavensis Dmoj\GI18160 Drosophila grimshawi Dgri\GH13296
Stocks & Reagents
Stocks Listed in FlyBase ( 1 )
Bloomington	28634 y1 v1; P{TRiP.JF03049}attP2
Genomic Clones ( 2 )
	BACR34C10 BACR48K04 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 122 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD35507
Other clones	DPiM_LD35507
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT31738 GH15141 GH18769 GM05836 GM21601 LD09549 LD27731 LD28381 LD32007 LD39068 LD45243 RE33623 RE42304 RE48394 RE49830 RE49859 RE56034 RE56326 RE64943 RE65086 RE67220 SD15422 SD19543 SD20721
Other clones	30020 52097 118790 297868 EC257660 EK057803 EK238134 EK270007 EK291804 EN14524 EP03160 FGM321G12 RP003001301 RP003011500 RP003039266 RP003040775 RP003045272 RP003051725 RP003053097 RP003053688 RP003059145 RP003098367 RP003098384 RP003115507 RP003121644 RP003130430 RP003133122 RP003140550 RP003142624 RP003158312 RP003163046 RP003169173 RP003169331 RP003170913 RP003172274 RP003180032 RP003185956 RP003192279 RP003199317 RP003206971 RP003213484 RP003215036 RP003219274 RP003236515 RP003247969 RP003284874 RP003292617 RP003300141 RP003313379 RP003314717 RP003316363 RP003319570 RP003330743 RP003352898 RP003404295 RP003419726 RP003421654 RP003426708 RP003429018 RP003431202 RP003433801 RP003445255 RP003454679 RP003456375 RP003461788 RP003463097 RP003467162 RP003467786 RP003477949 RP003479728 RP003492511 RP003506971 RP003511775 RP003517579 RP003521119 RP003529881 RP003540480 RP003546592 RP003566092 RP003575086 RP003586477 RP003591045 RP003606426 RP003621991 RP003622202 RP003641121 RP003644709 RP003651950 RP003655029 RP003657889 RP003659963 RP003666584 RP003672115 SD02247 UT01021 UT01283
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0032258 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34442
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_135569 RefSeq (Proteins) • NP_609413 DDBJ / EMBL / GenBank • AAF52963 AAL13885 AI455806 AW943292 AY058656 Entrez Gene - A searchable database of RefSeq genes. • 34442 UniProtKB/Swiss-Prot • Q95TN4
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Conserved oligomeric Golgi complex, subunit 4 (IPR013167) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD35507
Linkouts
	BioGRID - A database of protein and genetic interactions • 60522 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0032258 DroID - A comprehensive database of gene and protein interactions. • FBgn0032258 DRSC - Results from RNAi screens. • FBgn0032258 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032258 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7456-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0032258 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34442 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34442 modMine - Data generated by the modENCODE project. • FBgn0032258
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG7456 (Speder et al., 2006, Izutsu et al., 2012, Gonsalves et al., 2011, Perkins et al., 2009, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
References ( 16 )
Research paper	Izutsu et al., 2012, PLoS ONE 7(3): e33288 Genome features of "dark-fly", a Drosophila line reared long-term in a dark environment. [FBrf0217825] Gonsalves et al., 2011, BMC Genomics 12: 475 Genome-wide examination of the transcriptional response to ecdysteroids 20-hydroxyecdysone and ponasterone A in Drosophila melanogaster. [FBrf0216487] Speder et al., 2006, Nature 440(7085): 803--807 Type ID unconventional myosin controls left-right asymmetry in Drosophila. [FBrf0191256]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] Guruharsha et al., 2011, Cell 147(3): Table S3. [FBrf0218395] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Dietzl et al., 2007, Nature 448(7150): Supplementary Table 1. [FBrf0202579] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452] Oh et al., 2003, Genetics 163(1): Table S1. [FBrf0157097]
Personal communication to FlyBase	Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Perkins et al., 2009, Update to TRiP stock collection. Update to TRiP stock collection. [FBrf0208864] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]