Gene Dmel\CG7299

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General Information

Symbol

Dmel\CG7299

Species

D. melanogaster

Name

Annotation symbol

CG7299

Feature type

protein_coding_gene

FlyBase ID

FBgn0032282

Gene Model Status

Current

Stock availability

4 publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

32A4-32A4

Sequence location

2L:10,683,427..10,684,409 [-]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG7299 (FBgn0032282). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of extremely low expression. Peak expression observed during early larval stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult head, larval hindgut, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval trachea. Comments on Affy2 ProbeSet: ProbeSet 1630669_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG7299. Gene sequence location is 2L:10683427..10684409.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

32A4-32A4

Limits computationally determined from genome sequence between P{PZ}dbf¹ and P{lacW}SCAR^k03107

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG7299 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene model reviewed during 5.48

Apparent introns not annotated: probable artifact due to repetitive sequence.

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG7299-RA

FBtr0080130

NM_135592

643

177

CG7299-RC

FBtr0336851

NM_001201859

983

177

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG7299-PA

FBpp0079719

16.2

177

6.75

NP_609436

AAF52989

CG7299-PC

FBpp0307810

16.2

177

6.75

NP_001188788

ADV37038

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q9VKS1

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 11 -- 12

amnioserosa

(Fisher et al., 2012)

yolk nucleus

(Fisher et al., 2012)

embryonic stage 13 -- 16

amnioserosa

(Fisher et al., 2012)

embryonic dorsal epidermis

(Fisher et al., 2012)

embryonic epipharynx

(Fisher et al., 2012)

embryonic rectum

(Fisher et al., 2012)

embryonic/larval fat body

(Fisher et al., 2012)

yolk nucleus

(Fisher et al., 2012)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult head, larval hindgut, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval trachea.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		9.125
Larval Midgut		70.4
Larval Hindgut		4630.7
Larval Malpighian Tubules		13.1
Larval Fat Body		11.9
Larval Salivary Gland		2
Larval Trachea		264.4
Larval Carcass		3943.35
Adult Head		1401.6
Adult Eye		3.725
Adult Brain		4.8
Adult Thoracic-Abdominal Ganglion		3.2
Adult Crop		10.9
Adult Midgut		2.6
Adult Hindgut		6.9
Adult Malpighian Tubules		6.8
Adult Fat Body		14.7
Adult Salivary Gland		20.9
Adult Heart		1.95
Adult VirginFemale Spermatheca		13.4
Adult InseminatedFemale Spermatheca		14.2
Adult Ovary		2.5
Adult Testis		3.8
Adult Male Accessory Gland		3.2
Adult Carcass		6.7
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		9.125
Larval Midgut		70.4
Larval Hindgut		(4630.7)
Larval Malpighian Tubules		13.1
Larval Fat Body		11.9
Larval Salivary Gland		2
Larval Trachea		264.4
Larval Carcass		(3943.35)
Adult Head		(1401.6)
Adult Eye		3.725
Adult Brain		4.8
Adult Thoracic-Abdominal Ganglion		3.2
Adult Crop		10.9
Adult Midgut		2.6
Adult Hindgut		6.9
Adult Malpighian Tubules		6.8
Adult Fat Body		14.7
Adult Salivary Gland		20.9
Adult Heart		1.95
Adult VirginFemale Spermatheca		13.4
Adult InseminatedFemale Spermatheca		14.2
Adult Ovary		2.5
Adult Testis		3.8
Adult Male Accessory Gland		3.2
Adult Carcass		6.7
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		9.125
Larval Midgut		70.4
Larval Hindgut		(4630.7)
Larval Malpighian Tubules		13.1
Larval Fat Body		11.9
Larval Salivary Gland		2
Larval Trachea		264.4
Larval Carcass		(3943.35)
Adult Head		(1401.6)
Adult Eye		3.725
Adult Brain		4.8
Adult Thoracic-Abdominal Ganglion		3.2
Adult Crop		10.9
Adult Midgut		2.6
Adult Hindgut		6.9
Adult Malpighian Tubules		6.8
Adult Fat Body		14.7
Adult Salivary Gland		20.9
Adult Heart		1.95
Adult VirginFemale Spermatheca		13.4
Adult InseminatedFemale Spermatheca		14.2
Adult Ovary		2.5
Adult Testis		3.8
Adult Male Accessory Gland		3.2
Adult Carcass		6.7
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		9.125
Larval Midgut		70.4
Larval Hindgut		4630.7
Larval Malpighian Tubules		13.1
Larval Fat Body		11.9
Larval Salivary Gland		2
Larval Trachea		264.4
Larval Carcass		3943.35
Adult Head		1401.6
Adult Eye		3.725
Adult Brain		4.8
Adult Thoracic-Abdominal Ganglion		3.2
Adult Crop		10.9
Adult Midgut		2.6
Adult Hindgut		6.9
Adult Malpighian Tubules		6.8
Adult Fat Body		14.7
Adult Salivary Gland		20.9
Adult Heart		1.95
Adult VirginFemale Spermatheca		13.4
Adult InseminatedFemale Spermatheca		14.2
Adult Ovary		2.5
Adult Testis		3.8
Adult Male Accessory Gland		3.2
Adult Carcass		6.7
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		9.125
Larval Midgut		70.4
Larval Hindgut		4630.7
Larval Malpighian Tubules		13.1
Larval Fat Body		11.9
Larval Salivary Gland		2
Larval Trachea		264.4
Larval Carcass		3943.35
Adult Head		1401.6
Adult Eye		3.725
Adult Brain		4.8
Adult Thoracic-Abdominal Ganglion		3.2
Adult Crop		10.9
Adult Midgut		2.6
Adult Hindgut		6.9
Adult Malpighian Tubules		6.8
Adult Fat Body		14.7
Adult Salivary Gland		20.9
Adult Heart		1.95
Adult VirginFemale Spermatheca		13.4
Adult InseminatedFemale Spermatheca		14.2
Adult Ovary		2.5
Adult Testis		3.8
Adult Male Accessory Gland		3.2
Adult Carcass		6.7
Expression Level Scale		None Low Moderate High Very high

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		9.125
Larval Midgut		70.4
Larval Hindgut		(4630.7)
Larval Malpighian Tubules		13.1
Larval Fat Body		11.9
Larval Salivary Gland		2
Larval Trachea		264.4
Larval Carcass		(3943.35)
Adult Head		(1401.6)
Adult Eye		3.725
Adult Brain		4.8
Adult Thoracic-Abdominal Ganglion		3.2
Adult Crop		10.9
Adult Midgut		2.6
Adult Hindgut		6.9
Adult Malpighian Tubules		6.8
Adult Fat Body		14.7
Adult Salivary Gland		20.9
Adult Heart		1.95
Adult VirginFemale Spermatheca		13.4
Adult InseminatedFemale Spermatheca		14.2
Adult Ovary		2.5
Adult Testis		3.8
Adult Male Accessory Gland		3.2
Adult Carcass		6.7
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		9.125
Larval Midgut		70.4
Larval Hindgut		(4630.7)
Larval Malpighian Tubules		13.1
Larval Fat Body		11.9
Larval Salivary Gland		2
Larval Trachea		264.4
Larval Carcass		(3943.35)
Adult Head		1401.6
Adult Eye		3.725
Adult Brain		4.8
Adult Thoracic-Abdominal Ganglion		3.2
Adult Crop		10.9
Adult Midgut		2.6
Adult Hindgut		6.9
Adult Malpighian Tubules		6.8
Adult Fat Body		14.7
Adult Salivary Gland		20.9
Adult Heart		1.95
Adult VirginFemale Spermatheca		13.4
Adult InseminatedFemale Spermatheca		14.2
Adult Ovary		2.5
Adult Testis		3.8
Adult Male Accessory Gland		3.2
Adult Carcass		6.7
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		9.125
Larval Midgut		70.4
Larval Hindgut		4630.7
Larval Malpighian Tubules		13.1
Larval Fat Body		11.9
Larval Salivary Gland		2
Larval Trachea		264.4
Larval Carcass		3943.35
Adult Head		1401.6
Adult Eye		3.725
Adult Brain		4.8
Adult Thoracic-Abdominal Ganglion		3.2
Adult Crop		10.9
Adult Midgut		2.6
Adult Hindgut		6.9
Adult Malpighian Tubules		6.8
Adult Fat Body		14.7
Adult Salivary Gland		20.9
Adult Heart		1.95
Adult VirginFemale Spermatheca		13.4
Adult InseminatedFemale Spermatheca		14.2
Adult Ovary		2.5
Adult Testis		3.8
Adult Male Accessory Gland		3.2
Adult Carcass		6.7
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	1401.6
NA	Eye	3.725
NA	Brain	4.8
9.125	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	3.2
NA	Crop	no informative data
70.4	Midgut	2.6
4630.7	Hindgut	6.9
no informative data	Malpighian Tubules	6.8
no informative data	Fat Body	no informative data
2	Salivary Gland	no informative data
NA	Heart	1.95
264.4	Trachea	NA
NA	VirginFemale Spermatheca	no informative data
NA	InseminatedFemale Spermatheca	no informative data
NA	Ovary	2.5
NA	Testis	3.8
NA	Male Accessory Gland	3.2
3943.35	Carcass	6.7

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		37
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		56
head, virgin 4-day female		61
head, virgin 20-day female		32
head, mated 1-day female		54
head, mated 4-day female		23
head, mated 20-day female		35
head, mated 1-day male		92
head, mated 4-day male		92
head, mated 20-day male		166
salivary gland, larvae L3 wandering		11
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		58
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		71
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(37)
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		(56)
head, virgin 4-day female		(61)
head, virgin 20-day female		(32)
head, mated 1-day female		(54)
head, mated 4-day female		23
head, mated 20-day female		(35)
head, mated 1-day male		(92)
head, mated 4-day male		(92)
head, mated 20-day male		(166)
salivary gland, larvae L3 wandering		11
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		(58)
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		(71)
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		1
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		37
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		56
head, virgin 4-day female		61
head, virgin 20-day female		32
head, mated 1-day female		54
head, mated 4-day female		23
head, mated 20-day female		35
head, mated 1-day male		92
head, mated 4-day male		92
head, mated 20-day male		(166)
salivary gland, larvae L3 wandering		11
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		58
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		71
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		37
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		56
head, virgin 4-day female		61
head, virgin 20-day female		32
head, mated 1-day female		54
head, mated 4-day female		23
head, mated 20-day female		35
head, mated 1-day male		92
head, mated 4-day male		92
head, mated 20-day male		166
salivary gland, larvae L3 wandering		11
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		58
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		71
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		1
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		37
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		56
head, virgin 4-day female		61
head, virgin 20-day female		32
head, mated 1-day female		54
head, mated 4-day female		23
head, mated 20-day female		35
head, mated 1-day male		92
head, mated 4-day male		92
head, mated 20-day male		166
salivary gland, larvae L3 wandering		11
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		58
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		71
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(37)
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		(56)
head, virgin 4-day female		(61)
head, virgin 20-day female		32
head, mated 1-day female		(54)
head, mated 4-day female		23
head, mated 20-day female		(35)
head, mated 1-day male		(92)
head, mated 4-day male		(92)
head, mated 20-day male		(166)
salivary gland, larvae L3 wandering		11
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		(58)
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		(71)
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		1
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		37
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		56
head, virgin 4-day female		61
head, virgin 20-day female		32
head, mated 1-day female		54
head, mated 4-day female		23
head, mated 20-day female		35
head, mated 1-day male		92
head, mated 4-day male		92
head, mated 20-day male		(166)
salivary gland, larvae L3 wandering		11
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		58
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		71
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		37
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		56
head, virgin 4-day female		61
head, virgin 20-day female		32
head, mated 1-day female		54
head, mated 4-day female		23
head, mated 20-day female		35
head, mated 1-day male		92
head, mated 4-day male		92
head, mated 20-day male		166
salivary gland, larvae L3 wandering		11
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		58
digestive system, 1-day adult		1
digestive system, 4-day adult		0
digestive system, 20-day adult		1
fat body, larvae L3 wandering		0
fat body, white prepupae		0
fat body, pupae P8		0
carcass, larvae L3 wandering		71
carcass, 1-day adult		2
carcass, 4-day adult		2
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		1
accessory gland, mated 4-day male		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of extremely low expression. Peak expression observed during early larval stages.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		1
embryo 02-04hr		0
embryo 04-06hr		2
embryo 06-08hr		4
embryo 08-10hr		4
embryo 10-12hr		4
embryo 12-14hr		7
embryo 14-16hr		102
embryo 16-18hr		108
embryo 18-20hr		52
embryo 20-22hr		863
embryo 22-24hr		533
larva L1		808
larva L2		1983
larva L3 12hr old		1261
larva L3 puffstage 1-2		190
larva L3 puffstage 3-6		33
larva L3 puffstage 7-9		9
white prepupae new		1
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		3
adult male 05day		2
adult male 30day		1
adult female 01day		2
adult female 05day		0
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		1
embryo 02-04hr		0
embryo 04-06hr		2
embryo 06-08hr		4
embryo 08-10hr		4
embryo 10-12hr		4
embryo 12-14hr		7
embryo 14-16hr		(102)
embryo 16-18hr		(108)
embryo 18-20hr		(52)
embryo 20-22hr		(863)
embryo 22-24hr		(533)
larva L1		(808)
larva L2		(1983)
larva L3 12hr old		(1261)
larva L3 puffstage 1-2		(190)
larva L3 puffstage 3-6		(33)
larva L3 puffstage 7-9		9
white prepupae new		1
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		3
adult male 05day		2
adult male 30day		1
adult female 01day		2
adult female 05day		0
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		1
embryo 02-04hr		0
embryo 04-06hr		2
embryo 06-08hr		4
embryo 08-10hr		4
embryo 10-12hr		4
embryo 12-14hr		7
embryo 14-16hr		102
embryo 16-18hr		(108)
embryo 18-20hr		52
embryo 20-22hr		(863)
embryo 22-24hr		(533)
larva L1		(808)
larva L2		(1983)
larva L3 12hr old		(1261)
larva L3 puffstage 1-2		(190)
larva L3 puffstage 3-6		33
larva L3 puffstage 7-9		9
white prepupae new		1
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		3
adult male 05day		2
adult male 30day		1
adult female 01day		2
adult female 05day		0
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		1
embryo 02-04hr		0
embryo 04-06hr		2
embryo 06-08hr		4
embryo 08-10hr		4
embryo 10-12hr		4
embryo 12-14hr		7
embryo 14-16hr		102
embryo 16-18hr		108
embryo 18-20hr		52
embryo 20-22hr		863
embryo 22-24hr		533
larva L1		808
larva L2		1983
larva L3 12hr old		1261
larva L3 puffstage 1-2		190
larva L3 puffstage 3-6		33
larva L3 puffstage 7-9		9
white prepupae new		1
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		3
adult male 05day		2
adult male 30day		1
adult female 01day		2
adult female 05day		0
adult female 30day		1
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		1
embryo 02-04hr		0
embryo 04-06hr		2
embryo 06-08hr		4
embryo 08-10hr		4
embryo 10-12hr		4
embryo 12-14hr		7
embryo 14-16hr		102
embryo 16-18hr		108
embryo 18-20hr		52
embryo 20-22hr		863
embryo 22-24hr		533
larva L1		808
larva L2		1983
larva L3 12hr old		1261
larva L3 puffstage 1-2		190
larva L3 puffstage 3-6		33
larva L3 puffstage 7-9		9
white prepupae new		1
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		3
adult male 05day		2
adult male 30day		1
adult female 01day		2
adult female 05day		0
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		1
embryo 02-04hr		0
embryo 04-06hr		2
embryo 06-08hr		4
embryo 08-10hr		4
embryo 10-12hr		4
embryo 12-14hr		7
embryo 14-16hr		(102)
embryo 16-18hr		(108)
embryo 18-20hr		(52)
embryo 20-22hr		(863)
embryo 22-24hr		(533)
larva L1		(808)
larva L2		(1983)
larva L3 12hr old		(1261)
larva L3 puffstage 1-2		(190)
larva L3 puffstage 3-6		(33)
larva L3 puffstage 7-9		9
white prepupae new		1
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		3
adult male 05day		2
adult male 30day		1
adult female 01day		2
adult female 05day		0
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		1
embryo 02-04hr		0
embryo 04-06hr		2
embryo 06-08hr		4
embryo 08-10hr		4
embryo 10-12hr		4
embryo 12-14hr		7
embryo 14-16hr		102
embryo 16-18hr		108
embryo 18-20hr		52
embryo 20-22hr		(863)
embryo 22-24hr		(533)
larva L1		(808)
larva L2		(1983)
larva L3 12hr old		(1261)
larva L3 puffstage 1-2		(190)
larva L3 puffstage 3-6		33
larva L3 puffstage 7-9		9
white prepupae new		1
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		3
adult male 05day		2
adult male 30day		1
adult female 01day		2
adult female 05day		0
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		1
embryo 02-04hr		0
embryo 04-06hr		2
embryo 06-08hr		4
embryo 08-10hr		4
embryo 10-12hr		4
embryo 12-14hr		7
embryo 14-16hr		102
embryo 16-18hr		108
embryo 18-20hr		52
embryo 20-22hr		863
embryo 22-24hr		533
larva L1		808
larva L2		1983
larva L3 12hr old		1261
larva L3 puffstage 1-2		190
larva L3 puffstage 3-6		33
larva L3 puffstage 7-9		9
white prepupae new		1
white prepupae 12hr		1
white prepupae 24hr		0
pupae 2d postWPP		1
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		3
adult male 05day		2
adult male 30day		1
adult female 01day		2
adult female 05day		0
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		15
cold shock, 4-day adult		13
heat shock, 4-day adult		519
Cadmium 50 mM 6 hrs, larvae L3		1204
Cadmium 50 mM 12 hrs, larvae L3		502
Cadmium 50 mM 48 hrs, 4-day adult		711
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		1733
Copper 15 mM 48 hrs, 4-day adult		25
Zinc 5 mM 12 hrs, larvae L3		1340
Zinc 4.5 mM 48 hrs, 4-day adult		87
Ethanol 2.5% 3 hrs, larvae L3		4
Ethanol 5% 3 hrs, larvae L3		2070
Ethanol 10% 3 hrs, larvae L3		1450
Caffeine 1.5 mg/ml 4 hrs, larvae L3		522
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		134
Paraquat 5 mM 48 hrs, 4-day adult		10
Paraquat 10 mM 48 hrs, 4-day adult		10
Rotenone 2 μg 12 hrs, larvae L3		435
Rotenone 8 μg 12 hrs, larvae L3		1118
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		15
cold shock, 4-day adult		13
heat shock, 4-day adult		(519)
Cadmium 50 mM 6 hrs, larvae L3		(1204)
Cadmium 50 mM 12 hrs, larvae L3		(502)
Cadmium 50 mM 48 hrs, 4-day adult		(711)
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		(1733)
Copper 15 mM 48 hrs, 4-day adult		25
Zinc 5 mM 12 hrs, larvae L3		(1340)
Zinc 4.5 mM 48 hrs, 4-day adult		(87)
Ethanol 2.5% 3 hrs, larvae L3		4
Ethanol 5% 3 hrs, larvae L3		(2070)
Ethanol 10% 3 hrs, larvae L3		(1450)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(522)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		(134)
Paraquat 5 mM 48 hrs, 4-day adult		10
Paraquat 10 mM 48 hrs, 4-day adult		10
Rotenone 2 μg 12 hrs, larvae L3		(435)
Rotenone 8 μg 12 hrs, larvae L3		(1118)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		15
cold shock, 4-day adult		13
heat shock, 4-day adult		(519)
Cadmium 50 mM 6 hrs, larvae L3		(1204)
Cadmium 50 mM 12 hrs, larvae L3		(502)
Cadmium 50 mM 48 hrs, 4-day adult		(711)
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		(1733)
Copper 15 mM 48 hrs, 4-day adult		25
Zinc 5 mM 12 hrs, larvae L3		(1340)
Zinc 4.5 mM 48 hrs, 4-day adult		87
Ethanol 2.5% 3 hrs, larvae L3		4
Ethanol 5% 3 hrs, larvae L3		(2070)
Ethanol 10% 3 hrs, larvae L3		(1450)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(522)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		(134)
Paraquat 5 mM 48 hrs, 4-day adult		10
Paraquat 10 mM 48 hrs, 4-day adult		10
Rotenone 2 μg 12 hrs, larvae L3		(435)
Rotenone 8 μg 12 hrs, larvae L3		(1118)
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		15
cold shock, 4-day adult		13
heat shock, 4-day adult		519
Cadmium 50 mM 6 hrs, larvae L3		1204
Cadmium 50 mM 12 hrs, larvae L3		502
Cadmium 50 mM 48 hrs, 4-day adult		711
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		1733
Copper 15 mM 48 hrs, 4-day adult		25
Zinc 5 mM 12 hrs, larvae L3		1340
Zinc 4.5 mM 48 hrs, 4-day adult		87
Ethanol 2.5% 3 hrs, larvae L3		4
Ethanol 5% 3 hrs, larvae L3		2070
Ethanol 10% 3 hrs, larvae L3		1450
Caffeine 1.5 mg/ml 4 hrs, larvae L3		522
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		134
Paraquat 5 mM 48 hrs, 4-day adult		10
Paraquat 10 mM 48 hrs, 4-day adult		10
Rotenone 2 μg 12 hrs, larvae L3		435
Rotenone 8 μg 12 hrs, larvae L3		1118
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		15
cold shock, 4-day adult		13
heat shock, 4-day adult		519
Cadmium 50 mM 6 hrs, larvae L3		1204
Cadmium 50 mM 12 hrs, larvae L3		502
Cadmium 50 mM 48 hrs, 4-day adult		711
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		1733
Copper 15 mM 48 hrs, 4-day adult		25
Zinc 5 mM 12 hrs, larvae L3		1340
Zinc 4.5 mM 48 hrs, 4-day adult		87
Ethanol 2.5% 3 hrs, larvae L3		4
Ethanol 5% 3 hrs, larvae L3		2070
Ethanol 10% 3 hrs, larvae L3		1450
Caffeine 1.5 mg/ml 4 hrs, larvae L3		522
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		134
Paraquat 5 mM 48 hrs, 4-day adult		10
Paraquat 10 mM 48 hrs, 4-day adult		10
Rotenone 2 μg 12 hrs, larvae L3		435
Rotenone 8 μg 12 hrs, larvae L3		1118
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		15
cold shock, 4-day adult		13
heat shock, 4-day adult		(519)
Cadmium 50 mM 6 hrs, larvae L3		(1204)
Cadmium 50 mM 12 hrs, larvae L3		(502)
Cadmium 50 mM 48 hrs, 4-day adult		(711)
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		(1733)
Copper 15 mM 48 hrs, 4-day adult		25
Zinc 5 mM 12 hrs, larvae L3		(1340)
Zinc 4.5 mM 48 hrs, 4-day adult		(87)
Ethanol 2.5% 3 hrs, larvae L3		4
Ethanol 5% 3 hrs, larvae L3		(2070)
Ethanol 10% 3 hrs, larvae L3		(1450)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(522)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		(134)
Paraquat 5 mM 48 hrs, 4-day adult		10
Paraquat 10 mM 48 hrs, 4-day adult		10
Rotenone 2 μg 12 hrs, larvae L3		(435)
Rotenone 8 μg 12 hrs, larvae L3		(1118)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		15
cold shock, 4-day adult		13
heat shock, 4-day adult		(519)
Cadmium 50 mM 6 hrs, larvae L3		(1204)
Cadmium 50 mM 12 hrs, larvae L3		(502)
Cadmium 50 mM 48 hrs, 4-day adult		(711)
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		(1733)
Copper 15 mM 48 hrs, 4-day adult		25
Zinc 5 mM 12 hrs, larvae L3		(1340)
Zinc 4.5 mM 48 hrs, 4-day adult		87
Ethanol 2.5% 3 hrs, larvae L3		4
Ethanol 5% 3 hrs, larvae L3		(2070)
Ethanol 10% 3 hrs, larvae L3		(1450)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(522)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		134
Paraquat 5 mM 48 hrs, 4-day adult		10
Paraquat 10 mM 48 hrs, 4-day adult		10
Rotenone 2 μg 12 hrs, larvae L3		(435)
Rotenone 8 μg 12 hrs, larvae L3		(1118)
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		15
cold shock, 4-day adult		13
heat shock, 4-day adult		519
Cadmium 50 mM 6 hrs, larvae L3		1204
Cadmium 50 mM 12 hrs, larvae L3		502
Cadmium 50 mM 48 hrs, 4-day adult		711
Cadmium 100 mM 48 hrs, 4-day adult		0
Copper 0.5 mM 12 hrs, larvae L3		1733
Copper 15 mM 48 hrs, 4-day adult		25
Zinc 5 mM 12 hrs, larvae L3		1340
Zinc 4.5 mM 48 hrs, 4-day adult		87
Ethanol 2.5% 3 hrs, larvae L3		4
Ethanol 5% 3 hrs, larvae L3		2070
Ethanol 10% 3 hrs, larvae L3		1450
Caffeine 1.5 mg/ml 4 hrs, larvae L3		522
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		134
Paraquat 5 mM 48 hrs, 4-day adult		10
Paraquat 10 mM 48 hrs, 4-day adult		10
Rotenone 2 μg 12 hrs, larvae L3		435
Rotenone 8 μg 12 hrs, larvae L3		1118
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010)

mE2_34_mRNA_expression_cluster_32

External Data & Images

Linkouts

BDGP expression data

•

RE24635

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0032282

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG7299-RA

FlyExpress - Embryonic expression images (BDGP data)

•

Show all FlyExpress processed images for CG7299

Stages(s) 7-8

Stages(s) 11-12

Stages(s) 13-16

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

viable, with Scer\GAL4^pnr-MD237

CG7299^GD13308

Other Phenotypes

Allele

visible, with Scer\GAL4^pnr-MD237

CG7299^GD13308

Phenotype manifest in

Allele

chaeta | supernumerary, with Scer\GAL4^pnr-MD237

CG7299^GD13308

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of CG7299	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 4 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG7299	Mutagen	Stocks	Known lesion
CG7299^GD13308	in vitro construct - RNAi in vitro construct - regulatory fusion	2	Yes
CG7299^JF03073	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG7299^KK110414	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG7299^NIG.7299R	in vitro construct - RNAi in vitro construct - regulatory fusion	0	Yes

Aneuploid Aberrations

Disrupted in

Df(2L)Exel8026

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG7299 allele

Gene

References

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0032282

InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.

•

34468

Orthologs

OrthoDB Orthologs (44) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG6JDHS2

Dipteran inclusive ortholog search

EOG66MBSH, EOG6FJ8J0

Insect inclusive ortholog search

EOG6FJ74T

Arthropod inclusive ortholog search

EOG6XSJ4X

Metazoa inclusive ortholog search

No orthologs identified

Orthologs in Drosophila Species (EOG6JDHS2)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Dmel\l(2)01289

Drosophila melanogaster

fruit fly

Drosophila simulans

Drosophila simulans

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA24556

Drosophila persimilis

Dper\GL10981

Drosophila persimilis

Dper\GL10978

Drosophila willistoni

Dwil\GK22155

Drosophila virilis

Dvir\GJ20184

Drosophila mojavensis

Dmoj\GI20234

Drosophila grimshawi

Dgri\GH20141

Drosophila grimshawi

Dgri\GH15614

Orthologs in non-Drosophila Dipterans (EOG66MBSH, EOG6FJ8J0)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL010833

Anopheles gambiae

Malaria mosquito

Agam\AGAP006452

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ017149

Orthologs in non-Dipteran Insects (EOG6FJ74T)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Apis mellifera

Western honey bee

Amel\GB53064

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG009148

Acromyrmex echinatior

Panamanian leafcutter ant

Aech\AECH27145

Atta cephalotes

Leafcutter ant

Acep\ACEP16540

Atta cephalotes

Leafcutter ant

Acep\ACEP11175

Atta cephalotes

Leafcutter ant

Acep\ACEP11157

Camponotus floridanus

Florida carpenter ant

Cflo\CFLO17055

Camponotus floridanus

Florida carpenter ant

Cflo\CFLO17057

Harpegnathos saltator

Jerdons jumping ant

Hsal\HSAL16127

Linepithema humile

Argentine ant

Lhum\LH23483

Linepithema humile

Argentine ant

Lhum\LH23480

Linepithema humile

Argentine ant

Lhum\LH26043

Pogonomyrmex barbatus

Red harvester ant

Pbar\PB16988

Pogonomyrmex barbatus

Red harvester ant

Pbar\PB16991

Solenopsis invicta

Red fire ant

Sinv\SINV17023

Solenopsis invicta

Red fire ant

Sinv\SINV17030

Solenopsis invicta

Red fire ant

Sinv\SINV17032

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI002306

Bombyx mori

Silkmoth

Bmor\BGIBMGA008023

Pediculus humanus

Human body louse

Phum\PHUM441240

Tribolium castaneum

Red flour beetle

Tcas\TC000684

Orthologs in non-Insect Arthropods (EOG6XSJ4X)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Daphnia pulex

Water flea

Dpux\JGI_V11_202746

Ixodes scapularis

Deer tick

Isca\ISCW021850

Orthologs in non-Arthropod Metazoa (None identified)

No non-Arthropod Metazoa orthologies identified

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (5) based on analysis using Dmel annotation version 4.3

Organism

Gene

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila ananassae

Drosophila willistoni

Dwil\GK15517

Stocks & Reagents

Stocks Listed in FlyBase ( 4 )

Bloomington

28658

y¹ v¹; P{TRiP.JF03073}attP2

VDRC

v102027

P{KK110414}VIE-260B

v23252

w¹¹¹⁸; P{GD13308}v23252

v23253

w¹¹¹⁸; P{GD13308}v23253

Genomic Clones ( 1 )

BACR09I15

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 11 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

RE24635

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0032282

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

34468

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Source for merge of: CG7299 BcDNA:RE24635

(FlyBase, 1996-)

Additional comments

Source for merge of CG7299 BcDNA:RE24635 was a shared cDNA (date:030728).

(FlyBase, 1996-)

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

RefSeq (Proteins)

•

DDBJ / EMBL / GenBank

•

Entrez Gene - A searchable database of RefSeq genes.

•

34468

UniProtKB/TrEMBL

•

Q9VKS1

Other Crossreferences

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

•

RE24635

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0032282

DRSC - Results from RNAi screens.

•

FBgn0032282

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0032282

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG7299-RA

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0032282

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

34468

InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.

•

34468

modMine - Data generated by the modENCODE project.

•

FBgn0032282

Synonyms & Secondary IDs ( 3 )

Reported As

Symbol Synonym

BcDNA:RE24635

CG7299

(Keleman et al., 2009.8.5, Perkins et al., 2009, Riedl et al., 2005, Japanese National Institute of Genetics, 2012.5.21)

CT22515

(Ceriani et al., 2002)

Name Synonym

Secondary FlyBase IDs

FBgn0063048

References ( 12 )

Research paper

Riedl et al., 2005, Behav. Genet. 35(3): 231--244: Drosophila soluble guanylyl cyclase mutants exhibit increased foraging locomotion: behavioral and genomic investigations. [FBrf0187131]
Ceriani et al., 2002, J. Neurosci. 22(21): 9305--9319: Genome-wide expression analysis in Drosophila reveals genes controlling circadian behavior. [FBrf0152147]

Supplementary material

The modENCODE Consortium, 2010, Science 330(6012):: DataS14: Gene co-expression clusters. [FBrf0213979]
Mummery-Widmer et al., 2009, Nature 458(7241):: Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]

Personal communication to FlyBase

Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510]
Perkins et al., 2009, Update to TRiP stock collection.: Update to TRiP stock collection. [FBrf0208864]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file): Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]

FlyBase analysis

FlyBase, 1996-, FlyBase inference based on genome sequence analysis.: FlyBase inference based on genome sequence analysis. [FBrf0104946]

Stock list

Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY.: RNAi stocks available from NIG-FLY. [FBrf0218457]

Website

Fisher et al., 2012, BDGP insitu homepage: BDGP insitu homepage [FBrf0219073]