• Home
• Tools
  • Tools Overview
  • Query Tools

    
    • QuickSearch
    • QueryBuilder
    • TermLink
    • CytoSearch
    • RNA-Seq Search
    • Interactions Browser
    • ImageBrowse
    • Find A Person
    • Google™ FlyBase
  • Genomic/Map Tools

    
    • BLAST
    • GBrowse
    • GBrowse 2 Beta
    • CytoSearch
    • Feature Mapper
    • Aberrations Maps
    • Chromosome Maps
    • Coordinates Converter
  • Retrieve/Convert

    
    • Batch Download
    • Coordinates Converter
    • ID Converter
  • Data Submission

    
    • Fast-Track Your Paper
    • Submit Personal Comm
    • Add A New Person
    • Update Person Info
  • People

    
    • Find A Person
    • Add A New Person
    • Update Person Info
• Files
  • Files Overview
  • Current release
  • Archived releases
  • Map Conversion
  • FTP site:
  • Releases (FTP)
  • Genomes (FTP)
• Species
  • Phylogeny
  • Sequenced Species
  • Synteny Table
  • Color Illustrations
  • Abbreviations
• Documents
  • About FlyBase
  • Reference Manual:
  • Sections
  • Contents
  • Nomenclature
  • Release Notes
• Resources
  • All Resources
  • Model Organisms
  • Stock Collections
  • Vectors & Constructs
  • Other links:
  • BDGP
  • DGRC
  • DIS by issue
  • FlyExpress
  • Interactive Fly
  • modENCODE
  • Textpresso for Fly
• News
  • News
  • FlyBase Forum
  • FlyBase Positions
  • Meetings
  • Courses
  • Fly Board
  • White papers
  • Funding
  • bionet.dros
• Help
  • Google™ FlyBase
  • Site Map
  • FAQs
  • FlyBase Guides
  • Video Tutorials
  • Report help
  • New to Flies
  • Pers. comm.
  • Author guidelines
  • Contact FlyBase
• Archives
  • Prior Release
  • Other Archives
  • Coordinate Converter

Gene Dmel\CycY

General Information
Symbol	Dmel\CycY	Species	D. melanogaster
Name	Cyclin Y	Annotation symbol	CG14939
Feature type	protein_coding_gene	FlyBase ID	FBgn0032378
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	33A2-33A2	Sequence location	2L:11,810,092..11,813,780 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Cyclin Y is referred to in FlyBase by the symbol Dmel\CycY (CG14939, FBgn0032378). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: protein kinase binding. There is experimental evidence that it is involved in the biological process: developmental growth. 7 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Cyclin Y; Cyclin, N-terminal; Cyclin-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, larval midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1636868_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CycY. Gene sequence location is 2L:11810092..11813780.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 33A2-33A2   Limits computationally determined from genome sequence between P{PZ}crol04418&P{EP}crolEP1183 and P{EP}MESK1EP980
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CycY for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CycY-RA FBtr0080259  NM_135675   2148   406 CycY-RB FBtr0333425  NM_001273465   2553   406
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CycY-PA   FBpp0079843   45.1   406   6.69     NP_609519   AAF53122 CycY-PB   FBpp0305616   45.1   406   6.69     NP_001260394   AGB92929
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Cyclin, N-terminal (IPR006671) Cyclin Y (IPR012399) Cyclin-like (IPR013763)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA201978   AA391414   AA392418   AA392645   AA439040   AA441577   AA538782   AA540025   AA695422   AA802647   AA816302   AA820106   AA821240   AA950698   AA951288   AA979034   AA979442   AA979683   AE014134 AAF53122   AE014134 AGB92929   AI455146   AI455749   AI456323   AI512406   AI512468   AI514659   AI514999   AI516140   AI519997   AI533513   AI543860   AI546574   AX094041   AY069580 AAL39725   BG635511   BG637703   BI163323   BI164501   BI169107   BI172129   BI173304   BI213539   BI213681   BI213987   BI214923   BI215703   BI215908   BI216323   BI229195   BI229855   BI235586   BI352313   BI352993   BI353016   BI369292   BI375837   BI483952   BI484165   BI580038   BI586873   BI633860   BI634018   BI636582   BI637276   BI638435   BI638893   BI640905   BP541701   CK658363   CK658552   CK662155   CO188393   CO189952   CO271310   CO274831   CO277423   CO283211   CO291105   CO332026   CO335911   CO338375   CO343209   CO343753   EC057936   EC067761   EC069509   EC084947   EC219424   EC220622   EC244000   EC244517   EC256147   EC256219   EC261376   EC262550   EV592211
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VKF0
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, larval midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    525.85 Larval Midgut    202 Larval Hindgut    285.7 Larval Malpighian Tubules    376.2 Larval Fat Body    173.7 Larval Salivary Gland    170.8 Larval Trachea    283.85 Larval Carcass    261.825 Adult Head    132.9 Adult Eye    144.825 Adult Brain    243.2 Adult Thoracic-Abdominal Ganglion    260.8 Adult Crop    192.5 Adult Midgut    98.8 Adult Hindgut    120.6 Adult Malpighian Tubules    205.4 Adult Fat Body    197.6 Adult Salivary Gland    113.9 Adult Heart    186.65 Adult VirginFemale Spermatheca    116.9 Adult InseminatedFemale Spermatheca    125 Adult Ovary    233.4 Adult Testis    87.9 Adult Male Accessory Gland    110.5 Adult Carcass    100.4 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  525.85 Larval Midgut    202 Larval Hindgut    285.7 Larval Malpighian Tubules    376.2 Larval Fat Body    173.7 Larval Salivary Gland    170.8 Larval Trachea    283.85 Larval Carcass    261.825 Adult Head    132.9 Adult Eye    144.825 Adult Brain    243.2 Adult Thoracic-Abdominal Ganglion    260.8 Adult Crop    192.5 Adult Midgut    98.8 Adult Hindgut    120.6 Adult Malpighian Tubules    205.4 Adult Fat Body    197.6 Adult Salivary Gland    113.9 Adult Heart    186.65 Adult VirginFemale Spermatheca    116.9 Adult InseminatedFemale Spermatheca    125 Adult Ovary    233.4 Adult Testis    87.9 Adult Male Accessory Gland    110.5 Adult Carcass    100.4 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    525.85 Larval Midgut    202 Larval Hindgut    285.7 Larval Malpighian Tubules    376.2 Larval Fat Body    173.7 Larval Salivary Gland    170.8 Larval Trachea    283.85 Larval Carcass    261.825 Adult Head    132.9 Adult Eye    144.825 Adult Brain    243.2 Adult Thoracic-Abdominal Ganglion    260.8 Adult Crop    192.5 Adult Midgut    98.8 Adult Hindgut    120.6 Adult Malpighian Tubules    205.4 Adult Fat Body    197.6 Adult Salivary Gland    113.9 Adult Heart    186.65 Adult VirginFemale Spermatheca    116.9 Adult InseminatedFemale Spermatheca    125 Adult Ovary    233.4 Adult Testis    87.9 Adult Male Accessory Gland    110.5 Adult Carcass    100.4 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    525.85 Larval Midgut    202 Larval Hindgut    285.7 Larval Malpighian Tubules    376.2 Larval Fat Body    173.7 Larval Salivary Gland    170.8 Larval Trachea    283.85 Larval Carcass    261.825 Adult Head    132.9 Adult Eye    144.825 Adult Brain    243.2 Adult Thoracic-Abdominal Ganglion    260.8 Adult Crop    192.5 Adult Midgut    98.8 Adult Hindgut    120.6 Adult Malpighian Tubules    205.4 Adult Fat Body    197.6 Adult Salivary Gland    113.9 Adult Heart    186.65 Adult VirginFemale Spermatheca    116.9 Adult InseminatedFemale Spermatheca    125 Adult Ovary    233.4 Adult Testis    87.9 Adult Male Accessory Gland    110.5 Adult Carcass    100.4 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    525.85 Larval Midgut    202 Larval Hindgut    285.7 Larval Malpighian Tubules    376.2 Larval Fat Body    173.7 Larval Salivary Gland    170.8 Larval Trachea    283.85 Larval Carcass    261.825 Adult Head    132.9 Adult Eye    144.825 Adult Brain    243.2 Adult Thoracic-Abdominal Ganglion    260.8 Adult Crop    192.5 Adult Midgut    98.8 Adult Hindgut    120.6 Adult Malpighian Tubules    205.4 Adult Fat Body    197.6 Adult Salivary Gland    113.9 Adult Heart    186.65 Adult VirginFemale Spermatheca    116.9 Adult InseminatedFemale Spermatheca    125 Adult Ovary    233.4 Adult Testis    87.9 Adult Male Accessory Gland    110.5 Adult Carcass    100.4 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  525.85 Larval Midgut    202 Larval Hindgut    285.7 Larval Malpighian Tubules    376.2 Larval Fat Body    173.7 Larval Salivary Gland    170.8 Larval Trachea    283.85 Larval Carcass    261.825 Adult Head    132.9 Adult Eye    144.825 Adult Brain    243.2 Adult Thoracic-Abdominal Ganglion    260.8 Adult Crop    192.5 Adult Midgut    98.8 Adult Hindgut    120.6 Adult Malpighian Tubules    205.4 Adult Fat Body    197.6 Adult Salivary Gland    113.9 Adult Heart    186.65 Adult VirginFemale Spermatheca    116.9 Adult InseminatedFemale Spermatheca    125 Adult Ovary    233.4 Adult Testis    87.9 Adult Male Accessory Gland    110.5 Adult Carcass    100.4 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    525.85 Larval Midgut    202 Larval Hindgut    285.7 Larval Malpighian Tubules    376.2 Larval Fat Body    173.7 Larval Salivary Gland    170.8 Larval Trachea    283.85 Larval Carcass    261.825 Adult Head    132.9 Adult Eye    144.825 Adult Brain    243.2 Adult Thoracic-Abdominal Ganglion    260.8 Adult Crop    192.5 Adult Midgut    98.8 Adult Hindgut    120.6 Adult Malpighian Tubules    205.4 Adult Fat Body    197.6 Adult Salivary Gland    113.9 Adult Heart    186.65 Adult VirginFemale Spermatheca    116.9 Adult InseminatedFemale Spermatheca    125 Adult Ovary    233.4 Adult Testis    87.9 Adult Male Accessory Gland    110.5 Adult Carcass    100.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    525.85 Larval Midgut    202 Larval Hindgut    285.7 Larval Malpighian Tubules    376.2 Larval Fat Body    173.7 Larval Salivary Gland    170.8 Larval Trachea    283.85 Larval Carcass    261.825 Adult Head    132.9 Adult Eye    144.825 Adult Brain    243.2 Adult Thoracic-Abdominal Ganglion    260.8 Adult Crop    192.5 Adult Midgut    98.8 Adult Hindgut    120.6 Adult Malpighian Tubules    205.4 Adult Fat Body    197.6 Adult Salivary Gland    113.9 Adult Heart    186.65 Adult VirginFemale Spermatheca    116.9 Adult InseminatedFemale Spermatheca    125 Adult Ovary    233.4 Adult Testis    87.9 Adult Male Accessory Gland    110.5 Adult Carcass    100.4 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    132.9   NA  Eye    144.825   NA  Brain    243.2   525.85  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    260.8   NA  Crop    192.5   202  Midgut    98.8   285.7  Hindgut    120.6   376.2  Malpighian Tubules    205.4   173.7  Fat Body    197.6   170.8  Salivary Gland    113.9   NA  Heart    186.65   283.85  Trachea    NA   NA  VirginFemale Spermatheca    116.9   NA  InseminatedFemale Spermatheca    125   NA  Ovary    233.4   NA  Testis    87.9   NA  Male Accessory Gland    110.5   261.825  Carcass    100.4 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    45 central nervous system, larvae L3    70 central nervous system, pupae P8    53 head, virgin 1-day female    22 head, virgin 4-day female    20 head, virgin 20-day female    17 head, mated 1-day female    19 head, mated 4-day female    17 head, mated 20-day female    16 head, mated 1-day male    26 head, mated 4-day male    28 head, mated 20-day male    29 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    11 digestive system, larvae L3 wandering    26 digestive system, 1-day adult    20 digestive system, 4-day adult    19 digestive system, 20-day adult    19 fat body, larvae L3 wandering    15 fat body, white prepupae    29 fat body, pupae P8    30 carcass, larvae L3 wandering    42 carcass, 1-day adult    15 carcass, 4-day adult    16 carcass, 20-day adult    17 ovary, virgin 4-day female    63 ovary, mated 4-day female    49 testis, mated 4-day male    21 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (45) central nervous system, larvae L3  (70) central nervous system, pupae P8  (53) head, virgin 1-day female    22 head, virgin 4-day female    20 head, virgin 20-day female    17 head, mated 1-day female    19 head, mated 4-day female    17 head, mated 20-day female    16 head, mated 1-day male  26 head, mated 4-day male  (28) head, mated 20-day male  (29) salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    11 digestive system, larvae L3 wandering  26 digestive system, 1-day adult    20 digestive system, 4-day adult    19 digestive system, 20-day adult    19 fat body, larvae L3 wandering    15 fat body, white prepupae  (29) fat body, pupae P8  (30) carcass, larvae L3 wandering  (42) carcass, 1-day adult    15 carcass, 4-day adult    16 carcass, 20-day adult    17 ovary, virgin 4-day female  (63) ovary, mated 4-day female  (49) testis, mated 4-day male    21 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    45 central nervous system, larvae L3    70 central nervous system, pupae P8    53 head, virgin 1-day female    22 head, virgin 4-day female    20 head, virgin 20-day female    17 head, mated 1-day female    19 head, mated 4-day female    17 head, mated 20-day female    16 head, mated 1-day male    26 head, mated 4-day male    28 head, mated 20-day male    29 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    11 digestive system, larvae L3 wandering    26 digestive system, 1-day adult    20 digestive system, 4-day adult    19 digestive system, 20-day adult    19 fat body, larvae L3 wandering    15 fat body, white prepupae    29 fat body, pupae P8    30 carcass, larvae L3 wandering    42 carcass, 1-day adult    15 carcass, 4-day adult    16 carcass, 20-day adult    17 ovary, virgin 4-day female    63 ovary, mated 4-day female    49 testis, mated 4-day male    21 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    45 central nervous system, larvae L3    70 central nervous system, pupae P8    53 head, virgin 1-day female    22 head, virgin 4-day female    20 head, virgin 20-day female    17 head, mated 1-day female    19 head, mated 4-day female    17 head, mated 20-day female    16 head, mated 1-day male    26 head, mated 4-day male    28 head, mated 20-day male    29 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    11 digestive system, larvae L3 wandering    26 digestive system, 1-day adult    20 digestive system, 4-day adult    19 digestive system, 20-day adult    19 fat body, larvae L3 wandering    15 fat body, white prepupae    29 fat body, pupae P8    30 carcass, larvae L3 wandering    42 carcass, 1-day adult    15 carcass, 4-day adult    16 carcass, 20-day adult    17 ovary, virgin 4-day female    63 ovary, mated 4-day female    49 testis, mated 4-day male    21 accessory gland, mated 4-day male    12 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    45 central nervous system, larvae L3    70 central nervous system, pupae P8    53 head, virgin 1-day female    22 head, virgin 4-day female    20 head, virgin 20-day female    17 head, mated 1-day female    19 head, mated 4-day female    17 head, mated 20-day female    16 head, mated 1-day male    26 head, mated 4-day male    28 head, mated 20-day male    29 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    11 digestive system, larvae L3 wandering    26 digestive system, 1-day adult    20 digestive system, 4-day adult    19 digestive system, 20-day adult    19 fat body, larvae L3 wandering    15 fat body, white prepupae    29 fat body, pupae P8    30 carcass, larvae L3 wandering    42 carcass, 1-day adult    15 carcass, 4-day adult    16 carcass, 20-day adult    17 ovary, virgin 4-day female    63 ovary, mated 4-day female    49 testis, mated 4-day male    21 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (45) central nervous system, larvae L3  (70) central nervous system, pupae P8  (53) head, virgin 1-day female    22 head, virgin 4-day female    20 head, virgin 20-day female    17 head, mated 1-day female    19 head, mated 4-day female    17 head, mated 20-day female    16 head, mated 1-day male  26 head, mated 4-day male  28 head, mated 20-day male  29 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    11 digestive system, larvae L3 wandering  26 digestive system, 1-day adult    20 digestive system, 4-day adult    19 digestive system, 20-day adult    19 fat body, larvae L3 wandering    15 fat body, white prepupae  29 fat body, pupae P8  30 carcass, larvae L3 wandering  (42) carcass, 1-day adult    15 carcass, 4-day adult    16 carcass, 20-day adult    17 ovary, virgin 4-day female  (63) ovary, mated 4-day female  (49) testis, mated 4-day male    21 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    45 central nervous system, larvae L3    70 central nervous system, pupae P8    53 head, virgin 1-day female    22 head, virgin 4-day female    20 head, virgin 20-day female    17 head, mated 1-day female    19 head, mated 4-day female    17 head, mated 20-day female    16 head, mated 1-day male    26 head, mated 4-day male    28 head, mated 20-day male    29 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    11 digestive system, larvae L3 wandering    26 digestive system, 1-day adult    20 digestive system, 4-day adult    19 digestive system, 20-day adult    19 fat body, larvae L3 wandering    15 fat body, white prepupae    29 fat body, pupae P8    30 carcass, larvae L3 wandering    42 carcass, 1-day adult    15 carcass, 4-day adult    16 carcass, 20-day adult    17 ovary, virgin 4-day female    63 ovary, mated 4-day female    49 testis, mated 4-day male    21 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    45 central nervous system, larvae L3    70 central nervous system, pupae P8    53 head, virgin 1-day female    22 head, virgin 4-day female    20 head, virgin 20-day female    17 head, mated 1-day female    19 head, mated 4-day female    17 head, mated 20-day female    16 head, mated 1-day male    26 head, mated 4-day male    28 head, mated 20-day male    29 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    11 digestive system, larvae L3 wandering    26 digestive system, 1-day adult    20 digestive system, 4-day adult    19 digestive system, 20-day adult    19 fat body, larvae L3 wandering    15 fat body, white prepupae    29 fat body, pupae P8    30 carcass, larvae L3 wandering    42 carcass, 1-day adult    15 carcass, 4-day adult    16 carcass, 20-day adult    17 ovary, virgin 4-day female    63 ovary, mated 4-day female    49 testis, mated 4-day male    21 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    58 embryo 02-04hr    82 embryo 04-06hr    71 embryo 06-08hr    63 embryo 08-10hr    61 embryo 10-12hr    63 embryo 12-14hr    46 embryo 14-16hr    50 embryo 16-18hr    38 embryo 18-20hr    25 embryo 20-22hr    22 embryo 22-24hr    22 larva L1    29 larva L2    28 larva L3 12hr old    25 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6    29 larva L3 puffstage 7-9    33 white prepupae new    35 white prepupae 12hr    37 white prepupae 24hr    45 pupae 2d postWPP    33 pupae 3d postWPP    27 pupae 4d postWPP    20 adult male 01day    17 adult male 05day    18 adult male 30day    18 adult female 01day    30 adult female 05day    38 adult female 30day    39 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (58) embryo 02-04hr  (82) embryo 04-06hr  (71) embryo 06-08hr  (63) embryo 08-10hr  (61) embryo 10-12hr  (63) embryo 12-14hr  (46) embryo 14-16hr  (50) embryo 16-18hr  (38) embryo 18-20hr    25 embryo 20-22hr    22 embryo 22-24hr    22 larva L1  (29) larva L2  (28) larva L3 12hr old    25 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6  (29) larva L3 puffstage 7-9  (33) white prepupae new  (35) white prepupae 12hr  (37) white prepupae 24hr  (45) pupae 2d postWPP  (33) pupae 3d postWPP  (27) pupae 4d postWPP    20 adult male 01day    17 adult male 05day    18 adult male 30day    18 adult female 01day  (30) adult female 05day  (38) adult female 30day  (39) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    58 embryo 02-04hr    82 embryo 04-06hr    71 embryo 06-08hr    63 embryo 08-10hr    61 embryo 10-12hr    63 embryo 12-14hr    46 embryo 14-16hr    50 embryo 16-18hr    38 embryo 18-20hr    25 embryo 20-22hr    22 embryo 22-24hr    22 larva L1    29 larva L2    28 larva L3 12hr old    25 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6    29 larva L3 puffstage 7-9    33 white prepupae new    35 white prepupae 12hr    37 white prepupae 24hr    45 pupae 2d postWPP    33 pupae 3d postWPP    27 pupae 4d postWPP    20 adult male 01day    17 adult male 05day    18 adult male 30day    18 adult female 01day    30 adult female 05day    38 adult female 30day    39 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    58 embryo 02-04hr    82 embryo 04-06hr    71 embryo 06-08hr    63 embryo 08-10hr    61 embryo 10-12hr    63 embryo 12-14hr    46 embryo 14-16hr    50 embryo 16-18hr    38 embryo 18-20hr    25 embryo 20-22hr    22 embryo 22-24hr    22 larva L1    29 larva L2    28 larva L3 12hr old    25 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6    29 larva L3 puffstage 7-9    33 white prepupae new    35 white prepupae 12hr    37 white prepupae 24hr    45 pupae 2d postWPP    33 pupae 3d postWPP    27 pupae 4d postWPP    20 adult male 01day    17 adult male 05day    18 adult male 30day    18 adult female 01day    30 adult female 05day    38 adult female 30day    39 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    58 embryo 02-04hr    82 embryo 04-06hr    71 embryo 06-08hr    63 embryo 08-10hr    61 embryo 10-12hr    63 embryo 12-14hr    46 embryo 14-16hr    50 embryo 16-18hr    38 embryo 18-20hr    25 embryo 20-22hr    22 embryo 22-24hr    22 larva L1    29 larva L2    28 larva L3 12hr old    25 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6    29 larva L3 puffstage 7-9    33 white prepupae new    35 white prepupae 12hr    37 white prepupae 24hr    45 pupae 2d postWPP    33 pupae 3d postWPP    27 pupae 4d postWPP    20 adult male 01day    17 adult male 05day    18 adult male 30day    18 adult female 01day    30 adult female 05day    38 adult female 30day    39 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (58) embryo 02-04hr  (82) embryo 04-06hr  (71) embryo 06-08hr  (63) embryo 08-10hr  (61) embryo 10-12hr  (63) embryo 12-14hr  (46) embryo 14-16hr  (50) embryo 16-18hr  (38) embryo 18-20hr    25 embryo 20-22hr    22 embryo 22-24hr    22 larva L1  29 larva L2  28 larva L3 12hr old    25 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6  29 larva L3 puffstage 7-9  (33) white prepupae new  (35) white prepupae 12hr  (37) white prepupae 24hr  (45) pupae 2d postWPP  (33) pupae 3d postWPP  27 pupae 4d postWPP    20 adult male 01day    17 adult male 05day    18 adult male 30day    18 adult female 01day  30 adult female 05day  (38) adult female 30day  (39) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    58 embryo 02-04hr    82 embryo 04-06hr    71 embryo 06-08hr    63 embryo 08-10hr    61 embryo 10-12hr    63 embryo 12-14hr    46 embryo 14-16hr    50 embryo 16-18hr    38 embryo 18-20hr    25 embryo 20-22hr    22 embryo 22-24hr    22 larva L1    29 larva L2    28 larva L3 12hr old    25 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6    29 larva L3 puffstage 7-9    33 white prepupae new    35 white prepupae 12hr    37 white prepupae 24hr    45 pupae 2d postWPP    33 pupae 3d postWPP    27 pupae 4d postWPP    20 adult male 01day    17 adult male 05day    18 adult male 30day    18 adult female 01day    30 adult female 05day    38 adult female 30day    39 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    58 embryo 02-04hr    82 embryo 04-06hr    71 embryo 06-08hr    63 embryo 08-10hr    61 embryo 10-12hr    63 embryo 12-14hr    46 embryo 14-16hr    50 embryo 16-18hr    38 embryo 18-20hr    25 embryo 20-22hr    22 embryo 22-24hr    22 larva L1    29 larva L2    28 larva L3 12hr old    25 larva L3 puffstage 1-2    19 larva L3 puffstage 3-6    29 larva L3 puffstage 7-9    33 white prepupae new    35 white prepupae 12hr    37 white prepupae 24hr    45 pupae 2d postWPP    33 pupae 3d postWPP    27 pupae 4d postWPP    20 adult male 01day    17 adult male 05day    18 adult male 30day    18 adult female 01day    30 adult female 05day    38 adult female 30day    39 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    105 Schneider line 2 Sg4    93 embryonic 1182-4H    83 embryonic GM2    78 embryonic Kc167    84 embryonic S1    77 embryonic S3    80 leg disc CME L1    84 wing disc CME-W2    78 wing disc ML-DmD8    53 wing disc ML-DmD9    84 wing disc ML-DmD16-c3    59 wing disc ML-DmD21    101 wing disc ML-DmD32    77 haltere disc ML-DmD17-c3    84 eye-antennal disc ML-DmD11    62 antennal disc ML-DmD20-c5    87 mixed discs ML-DmD4-c1    88 CNS ML-DmBG1-c1    55 CNS ML-DmBG2-c2    105 tumorous blood cells mbn2    88 ovary fGS/OSS    49 ovary OSC    45 ovary OSS    36 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (105) Schneider line 2 Sg4  (93) embryonic 1182-4H  (83) embryonic GM2  (78) embryonic Kc167  (84) embryonic S1  (77) embryonic S3  (80) leg disc CME L1  (84) wing disc CME-W2  (78) wing disc ML-DmD8  (53) wing disc ML-DmD9  (84) wing disc ML-DmD16-c3  (59) wing disc ML-DmD21  (101) wing disc ML-DmD32  (77) haltere disc ML-DmD17-c3  (84) eye-antennal disc ML-DmD11  (62) antennal disc ML-DmD20-c5  (87) mixed discs ML-DmD4-c1  (88) CNS ML-DmBG1-c1  (55) CNS ML-DmBG2-c2  (105) tumorous blood cells mbn2  (88) ovary fGS/OSS  (49) ovary OSC  (45) ovary OSS  (36) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  105 Schneider line 2 Sg4    93 embryonic 1182-4H    83 embryonic GM2    78 embryonic Kc167    84 embryonic S1    77 embryonic S3    80 leg disc CME L1    84 wing disc CME-W2    78 wing disc ML-DmD8    53 wing disc ML-DmD9    84 wing disc ML-DmD16-c3    59 wing disc ML-DmD21  101 wing disc ML-DmD32    77 haltere disc ML-DmD17-c3    84 eye-antennal disc ML-DmD11    62 antennal disc ML-DmD20-c5    87 mixed discs ML-DmD4-c1    88 CNS ML-DmBG1-c1    55 CNS ML-DmBG2-c2  105 tumorous blood cells mbn2    88 ovary fGS/OSS    49 ovary OSC    45 ovary OSS    36 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    105 Schneider line 2 Sg4    93 embryonic 1182-4H    83 embryonic GM2    78 embryonic Kc167    84 embryonic S1    77 embryonic S3    80 leg disc CME L1    84 wing disc CME-W2    78 wing disc ML-DmD8    53 wing disc ML-DmD9    84 wing disc ML-DmD16-c3    59 wing disc ML-DmD21    101 wing disc ML-DmD32    77 haltere disc ML-DmD17-c3    84 eye-antennal disc ML-DmD11    62 antennal disc ML-DmD20-c5    87 mixed discs ML-DmD4-c1    88 CNS ML-DmBG1-c1    55 CNS ML-DmBG2-c2    105 tumorous blood cells mbn2    88 ovary fGS/OSS    49 ovary OSC    45 ovary OSS    36 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    105 Schneider line 2 Sg4    93 embryonic 1182-4H    83 embryonic GM2    78 embryonic Kc167    84 embryonic S1    77 embryonic S3    80 leg disc CME L1    84 wing disc CME-W2    78 wing disc ML-DmD8    53 wing disc ML-DmD9    84 wing disc ML-DmD16-c3    59 wing disc ML-DmD21    101 wing disc ML-DmD32    77 haltere disc ML-DmD17-c3    84 eye-antennal disc ML-DmD11    62 antennal disc ML-DmD20-c5    87 mixed discs ML-DmD4-c1    88 CNS ML-DmBG1-c1    55 CNS ML-DmBG2-c2    105 tumorous blood cells mbn2    88 ovary fGS/OSS    49 ovary OSC    45 ovary OSS    36 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (105) Schneider line 2 Sg4  (93) embryonic 1182-4H  (83) embryonic GM2  (78) embryonic Kc167  (84) embryonic S1  (77) embryonic S3  (80) leg disc CME L1  (84) wing disc CME-W2  (78) wing disc ML-DmD8  (53) wing disc ML-DmD9  (84) wing disc ML-DmD16-c3  (59) wing disc ML-DmD21  (101) wing disc ML-DmD32  (77) haltere disc ML-DmD17-c3  (84) eye-antennal disc ML-DmD11  (62) antennal disc ML-DmD20-c5  (87) mixed discs ML-DmD4-c1  (88) CNS ML-DmBG1-c1  (55) CNS ML-DmBG2-c2  (105) tumorous blood cells mbn2  (88) ovary fGS/OSS  (49) ovary OSC  (45) ovary OSS  (36) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  105 Schneider line 2 Sg4    93 embryonic 1182-4H    83 embryonic GM2    78 embryonic Kc167    84 embryonic S1    77 embryonic S3    80 leg disc CME L1    84 wing disc CME-W2    78 wing disc ML-DmD8    53 wing disc ML-DmD9    84 wing disc ML-DmD16-c3    59 wing disc ML-DmD21  101 wing disc ML-DmD32    77 haltere disc ML-DmD17-c3    84 eye-antennal disc ML-DmD11    62 antennal disc ML-DmD20-c5    87 mixed discs ML-DmD4-c1    88 CNS ML-DmBG1-c1    55 CNS ML-DmBG2-c2  105 tumorous blood cells mbn2    88 ovary fGS/OSS    49 ovary OSC    45 ovary OSS    36 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    105 Schneider line 2 Sg4    93 embryonic 1182-4H    83 embryonic GM2    78 embryonic Kc167    84 embryonic S1    77 embryonic S3    80 leg disc CME L1    84 wing disc CME-W2    78 wing disc ML-DmD8    53 wing disc ML-DmD9    84 wing disc ML-DmD16-c3    59 wing disc ML-DmD21    101 wing disc ML-DmD32    77 haltere disc ML-DmD17-c3    84 eye-antennal disc ML-DmD11    62 antennal disc ML-DmD20-c5    87 mixed discs ML-DmD4-c1    88 CNS ML-DmBG1-c1    55 CNS ML-DmBG2-c2    105 tumorous blood cells mbn2    88 ovary fGS/OSS    49 ovary OSC    45 ovary OSS    36 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    27 cold shock, 4-day adult    19 heat shock, 4-day adult    28 Cadmium 50 mM 6 hrs, larvae L3    26 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    40 Copper 0.5 mM 12 hrs, larvae L3    26 Copper 15 mM 48 hrs, 4-day adult    35 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    23 Ethanol 2.5% 3 hrs, larvae L3    43 Ethanol 5% 3 hrs, larvae L3    24 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    39 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    24 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (27) cold shock, 4-day adult    19 heat shock, 4-day adult  (28) Cadmium 50 mM 6 hrs, larvae L3  26 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult  (27) Cadmium 100 mM 48 hrs, 4-day adult  (40) Copper 0.5 mM 12 hrs, larvae L3  26 Copper 15 mM 48 hrs, 4-day adult  (35) Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    23 Ethanol 2.5% 3 hrs, larvae L3  (43) Ethanol 5% 3 hrs, larvae L3    24 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (39) Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult  (35) Paraquat 10 mM 48 hrs, 4-day adult  (34) Rotenone 2 μg 12 hrs, larvae L3    24 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    27 cold shock, 4-day adult    19 heat shock, 4-day adult    28 Cadmium 50 mM 6 hrs, larvae L3    26 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    40 Copper 0.5 mM 12 hrs, larvae L3    26 Copper 15 mM 48 hrs, 4-day adult    35 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    23 Ethanol 2.5% 3 hrs, larvae L3    43 Ethanol 5% 3 hrs, larvae L3    24 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    39 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    24 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    27 cold shock, 4-day adult    19 heat shock, 4-day adult    28 Cadmium 50 mM 6 hrs, larvae L3    26 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    40 Copper 0.5 mM 12 hrs, larvae L3    26 Copper 15 mM 48 hrs, 4-day adult    35 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    23 Ethanol 2.5% 3 hrs, larvae L3    43 Ethanol 5% 3 hrs, larvae L3    24 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    39 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    24 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    27 cold shock, 4-day adult    19 heat shock, 4-day adult    28 Cadmium 50 mM 6 hrs, larvae L3    26 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    40 Copper 0.5 mM 12 hrs, larvae L3    26 Copper 15 mM 48 hrs, 4-day adult    35 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    23 Ethanol 2.5% 3 hrs, larvae L3    43 Ethanol 5% 3 hrs, larvae L3    24 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    39 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    24 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  27 cold shock, 4-day adult    19 heat shock, 4-day adult  28 Cadmium 50 mM 6 hrs, larvae L3  26 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult  27 Cadmium 100 mM 48 hrs, 4-day adult  (40) Copper 0.5 mM 12 hrs, larvae L3  26 Copper 15 mM 48 hrs, 4-day adult  (35) Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    23 Ethanol 2.5% 3 hrs, larvae L3  (43) Ethanol 5% 3 hrs, larvae L3    24 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (39) Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult  (35) Paraquat 10 mM 48 hrs, 4-day adult  (34) Rotenone 2 μg 12 hrs, larvae L3    24 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    27 cold shock, 4-day adult    19 heat shock, 4-day adult    28 Cadmium 50 mM 6 hrs, larvae L3    26 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    40 Copper 0.5 mM 12 hrs, larvae L3    26 Copper 15 mM 48 hrs, 4-day adult    35 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    23 Ethanol 2.5% 3 hrs, larvae L3    43 Ethanol 5% 3 hrs, larvae L3    24 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    39 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    24 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    27 cold shock, 4-day adult    19 heat shock, 4-day adult    28 Cadmium 50 mM 6 hrs, larvae L3    26 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    40 Copper 0.5 mM 12 hrs, larvae L3    26 Copper 15 mM 48 hrs, 4-day adult    35 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    23 Ethanol 2.5% 3 hrs, larvae L3    43 Ethanol 5% 3 hrs, larvae L3    24 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    21 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    39 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    24 Rotenone 8 μg 12 hrs, larvae L3    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_30 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • LD31675 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032378 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG14939-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CycYGD8494 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CycY Class Mutagen Stocks Known lesion CycYG18966 P-element activity 1 -- CycYMI01297 1 --
Alleles Carried on Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CycY Class Mutagen Stocks Known lesion CycYGD8494 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CycYHMS00974 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CycYKK101577 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CycY+t7.3 in vitro construct - genomic fragment 0 Yes CycYhs.T:Hsap\MYC 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)CycYE8 (Liu and Finley, 2010) Df(2L)Exel6030 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{TRiP.HMS00974} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}CycYG18966 NA miscellaneous insertions Mi{MIC}CycYMI01297 NA
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
developmental growth inferred from mutant phenotype (Liu and Finley, 2010)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
protein kinase binding inferred from electronic annotation with InterPro:IPR012399 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
regulation of cyclin-dependent protein serine/threonine kinase activity inferred from electronic annotation with InterPro:IPR012399 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CycY - AP-2α anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Arpc1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Arpc2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Arpc5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Art1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Atx2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Bap55 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - CG10077 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - CG11107 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - CG11266 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - CG12264 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - CG14786 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - CG3689 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - CG3731 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - CG3862 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - CG6701 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - CG7033 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - CG7878 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - CG8021 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - CG8043 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - CkIIα anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Hakai anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Hsc70-1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Imp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Ns1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Nup44A anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - P32 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Pgam5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Rab1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Rbp1-like anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - RpS11 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - RpS12 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - RpS27A anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Rpt2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - Saf-B anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - SmD3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - TFAM anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - U4-U6-60K anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - cathD anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - eIF4AIII anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - l(3)72Ab anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - mRpL13 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - mRpL39 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - me31B anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - nito anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - nop5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - qkr54B anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - qkr58E-3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CycY - tyf anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CycY allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 60646 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0032378 DroID - A comprehensive database of gene and protein interactions. • FBgn0032378 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34593 SignaLink - A protein-protein and protein-miRNA interaction database with multi-layered structure and multiple confidence scores. • Q9VKF0
Orthologs
OrthoDB Orthologs (45) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6QZ85Z Dipteran inclusive ortholog search EOG6ZGPN2 Insect inclusive ortholog search EOG6MKMBZ Arthropod inclusive ortholog search EOG6RR500 Metazoa inclusive ortholog search EOG6BPD5K
Orthologs in Drosophila Species (EOG6QZ85Z)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CycY     Drosophila simulans   Dsim\GD22156 Y   Drosophila sechellia   Dsec\GM10957 Y   Drosophila erecta   Dere\GG10296 Y   Drosophila yakuba   Dyak\GE12676 Y   Drosophila ananassae   Dana\GF23396 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA13366 Y   Drosophila persimilis   Dper\GL15279 Y   Drosophila willistoni   Dwil\GK14972 Y   Drosophila virilis   Dvir\GJ17477 Y   Drosophila mojavensis   Dmoj\GI17691 Y   Drosophila grimshawi   Dgri\GH13072 Y
Orthologs in non-Drosophila Dipterans (EOG6ZGPN2)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL010543   Anopheles gambiae Malaria mosquito  Agam\AGAP008969   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ019979
Orthologs in non-Dipteran Insects (EOG6MKMBZ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB41975   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG002713   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH11955   Atta cephalotes Leafcutter ant  Acep\ACEP23647   Camponotus floridanus Florida carpenter ant  Cflo\CFLO18405   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL20618   Linepithema humile Argentine ant  Lhum\LH24391   Pogonomyrmex barbatus Red harvester ant  Pbar\PB16545   Solenopsis invicta Red fire ant  Sinv\SINV16008   Acyrthosiphon pisum Pea aphid  Apim\ACYPI005883   Bombyx mori Silkmoth  Bmor\BGIBMGA005969   Pediculus humanus Human body louse  Phum\PHUM462200   Tribolium castaneum Red flour beetle  Tcas\TC013890
Orthologs in non-Insect Arthropods (EOG6RR500)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\COI   Ixodes scapularis Deer tick  Isca\ISCW009124
Orthologs in non-Arthropod Metazoa (EOG6BPD5K)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\ZK353.1   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_015494gn   Danio rerio Zebrafish  Drer\si:dkey-18n12.2   Danio rerio Zebrafish  Drer\CH1073-226M24.2   Xenopus tropicalis Western clawed frog  Xtro\ccny   Xenopus tropicalis Western clawed frog  Xtro\ccnyl1   Gallus gallus Domestic chicken  Ggal\CCNYL1   Gallus gallus Domestic chicken  Ggal\CCNY   Mus musculus House mouse  Mmus\Ccnyl1   Mus musculus House mouse  Mmus\Ccny   Rattus norvegicus Norway rat  Rnor\Ccny   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000023807   Homo sapiens Human  Hsap\ENSG00000108100   Homo sapiens Human  Hsap\ENSG00000182632   Homo sapiens Human  Hsap\ENSG00000163249
Human Orthologs (3)
Gene OMIM HGNC Hsap\ENSG00000108100     Hsap\ENSG00000182632     Hsap\ENSG00000163249
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD22156 Drosophila sechellia Dsec\GM10957 Drosophila erecta Dere\GG10296 Drosophila yakuba Dyak\GE12676 Drosophila ananassae Dana\GF23396 Drosophila pseudoobscura pseudoobscura Dpse\GA13366 Drosophila persimilis Dper\GL15279 Drosophila willistoni Dwil\GK14972 Drosophila virilis Dvir\GJ17477 Drosophila mojavensis Dmoj\GI17691 Drosophila grimshawi Dgri\GH13072
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	34175 y1 w*; Mi{MIC}CycYMI01297 34009 y1 sc* v1; P{TRiP.HMS00974}attP2 26950 y1 w*; P{EP}CycYG18966/CyO, P{lArB}A208.1M2
VDRC	v107010 P{KK101577}VIE-260B v32334 w1118; P{GD8494}v32334 v32335 w1118; P{GD8494}v32335
Genomic Clones ( 1 )
	BACR05B13 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 92 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD31675
Other clones	DPiM_LD31675
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GM02802 GM06055 GM18776 GM21688 GM21790 LD01168 LD04604 LD09821 LD11272 LD12880 LD13475 LD16556 LD18385 LD19350 LD21441 LD22613 LD22705 LD30684 LD33280 LD34009 LD35424 LD36246 LD39910 LD41901 LD44276 LD44352 LD45522 LD46406 LD46653 LP15241 LP15556 LP22161 RE02695 RE04194 RE10085 RE14095 RE16202 RE18959 RE19137 RE19657 RE21077 RE22292 RE22676 RE23419 RE26925 RE27726 RE31459 RE55425 RE63723 RE66930 RE67232 RE74159 RH26985 SD05367 SD06391 SD12944 SD18316 SD19241 SD20726 SD21293 SD23932 SD28036
Other clones	5227 13733 18584 43646 274607 293936 299924 CK01.56C.D12 CK01.60B.D6 CK01.98C.D2 Dmel_neb_014070_0612_1791 EC256147 EC256219 EK039555 EK045736 EK076134 EK103005 EK115613 EK124359 EK162614 EK302333 EN11458 EN16642 EP16314 EP17953 FGC004E03 HL07958 SD28247
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0032378 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34593
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: CycY CG14939 (Liu and Finley, 2010)
Source for database merge of	Source for merge of: CG14939 anon-WO0118547.165 (FlyBase, 1996-)
Additional comments	Source for merge of CG14939 anon-WO0118547.165 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
	Area matching Drosophila ESTS AA979442 and AA392418 (inverted). (Davies, 2001.3.15)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_135675 NM_001273465 RefSeq (Proteins) • NP_609519 NP_001260394 DDBJ / EMBL / GenBank • AA392418 AA951288 AA979442 AAF53122 AAL39725 AGB92929 AX094041 AY069580 Entrez Gene - A searchable database of RefSeq genes. • 34593 UniProtKB/TrEMBL • Q9VKF0
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Cyclin, N-terminal (IPR006671) Cyclin Y (IPR012399) Cyclin-like (IPR013763) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD31675
Linkouts
	BioGRID - A database of protein and genetic interactions • 60646 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0032378 DroID - A comprehensive database of gene and protein interactions. • FBgn0032378 DRSC - Results from RNAi screens. • FBgn0032378 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032378 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG14939-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0032378 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34593 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34593 modMine - Data generated by the modENCODE project. • FBgn0032378 SignaLink - A protein-protein and protein-miRNA interaction database with multi-layered structure and multiple confidence scores. • Q9VKF0
Synonyms & Secondary IDs ( 7 )
Reported As
Symbol Synonym	anon-WO0118547.165   CG14939 (Liu and Finley, 2010, Liu and Finley, 2007, Liu and Finley, 2008, Keleman et al., 2009.8.5, Davidson et al., 2009, Ni et al., 2010.12.1) CycY (Liu and Finley, 2010) Dcyclin Y (Davidson et al., 2009) i182 (Battersby et al., 2003)
Name Synonym	Cyclin Y (Liu and Finley, 2010) Drosophila cyclin Y (Davidson et al., 2009)
Secondary FlyBase IDs
	FBgn0062199
References ( 22 )
Generate a list of	All references relating to this gene ( 22 )
List References by type	Research paper  ( 3 ) Supplementary material  ( 4 ) Personal communication to FlyBase  ( 9 ) Abstract  ( 2 ) FlyBase analysis  ( 1 ) Patent  ( 1 ) DNA/RNA sequence record  ( 1 ) Website  ( 1 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...