Gene Dmel\CG18483

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General Information

Symbol

Dmel\CG18483

Species

D. melanogaster

Name

Annotation symbol

Feature type

protein_coding_gene

FlyBase ID

FBgn0032562

Gene Model Status

Withdrawn

Stock availability

None publicly available

Also Known As

BG:DS07851.10

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

Sequence location

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG18483 (FBgn0032562).The gene previously had a gene model which is not supported by current evidence. It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has no annotated transcripts. Gene has not been localized to the genome sequence.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

UniProtKB/Swiss-Prot

UniProtKB/TrEMBL

Mapped Features

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

modENCODE Anatomy RNA-Seq

modENCODE Development RNA-Seq

modENCODE Cell Lines RNA-Seq

modENCODE Treatments RNA-Seq

Expression Clusters

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0032562

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of CG18483	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 0 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG18483	Class	Mutagen	Stocks	Known lesion

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG18483 allele

Gene

References

External Data

Linkouts

Orthologs

OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

No orthologs identified

Dipteran inclusive ortholog search

No orthologs identified

Insect inclusive ortholog search

No orthologs identified

Arthropod inclusive ortholog search

No orthologs identified

Metazoa inclusive ortholog search

No orthologs identified

Orthologs in Drosophila Species (None identified)

No orthologies identified

Orthologs in non-Drosophila Dipterans (None identified)

No non-Drosophilid orthologies identified

Orthologs in non-Dipteran Insects (None identified)

No non-Dipteran orthologies identified

Orthologs in non-Insect Arthropods (None identified)

No non-Insect Arthropod orthologies identified

Orthologs in non-Arthropod Metazoa (None identified)

No non-Arthropod Metazoa orthologies identified

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (0) based on analysis using Dmel annotation version 4.3

No orthologs identified

Stocks & Reagents

Stocks Listed in FlyBase ( 0 )

Genomic Clones ( 0 )

cDNA Clones ( 0 )

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

"ms(2)35Ci" was previously thought to correspond to the gene prediction CG18483 (also known as BG:DS07851.10, see FBrf0111326), because the P{PZ}ms(2)35Ci⁰²³¹⁶ insertion maps to an intron of the CG18483 gene prediction. However, the CG18483 annotation was eliminated in release 3 of the genome annotation and a new annotation (CG31733) was predicted on the opposite strand to CG18483. The P{PZ}ms(2)35Ci⁰²³¹⁶ insertion maps within the coding region of CG31733, suggesting that "ms(2)35Ci" corresponds to CG31733.

(FlyBase Genome Annotators, 2002-2003)

The P{PZ}ms(2)35Ci⁰²³¹⁶ insertion maps to an intron of the "BG:DS07851.10" gene prediction (this is a weak GENSCAN prediction with neither ESTs nor any significant sequence matches). However, it is possible that the conclusion that the predicted gene "BG:DS07851.10" corresponds to "ms(2)35Ci" is false and that the male-sterile phenotype of ms(2)35Ci⁰²³¹⁶ is due to the insertion of the P{PZ} element in this mutation 1kb 5' to "BG:DS07851.8".

(Ashburner et al., 1999)

Other Comments

Annotation CG18483 eliminated in release 3 of the genome annotation.

(FlyBase Genome Annotators, 2002-2003)

FlyBase curator comment: the gene referred to as "Ms(2)35Ci" in FBrf0127289 actually corresponds to the gene prediction "BG:DS07851.10". Confusion arose because the "ms(2)35Ci" mutant was previously associated with the "BG:DS07851.10" gene prediction, but current evidence suggests it should instead be associated with the "CG31733" annotation (see FBrf0148886).

(Reese et al., 2000)

External Crossreferences & Linkouts

Sequence Crossreferences

Other Crossreferences

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0032562

Synonyms & Secondary IDs ( 3 )

Reported As

Symbol Synonym

BG:DS07851.10

(Ashburner et al., 1999.10.12, Ashburner et al., 1999, )

CG18483

Ms(2)35Ci

(Reese et al., 2000)

Name Synonym

Secondary FlyBase IDs

References ( 5 )

Research paper

Reese et al., 2000, Genome Res. 10(4): 529--538: Genie - Gene finding in Drosophila melanogaster. [FBrf0127289]
Ashburner et al., 1999, Genetics 153(1): 179--219: An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster. The Adh region. [FBrf0111326]

Personal communication to FlyBase

Misra, 2000.4.12, Annotation identities: Category 6.: Annotation identities: Category 6. [FBrf0126911]
Ashburner et al., 1999.10.12, Adh.: Adh. [FBrf0112153]

FlyBase analysis

FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886]