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Gene Dmel\Oli

General Information
Symbol	Dmel\Oli	Species	D. melanogaster
Name	Olig family	Annotation symbol	CG5545
Feature type	protein_coding_gene	FlyBase ID	FBgn0032651
Gene Model Status	Current	Stock availability	6 publicly available
Also Known As	Doli
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	36D1-36D1	Sequence location	2L:17,589,402..17,591,267 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Olig family is referred to in FlyBase by the symbol Dmel\Oli (CG5545, FBgn0032651). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: sequence-specific DNA binding transcription factor activity. Based on sequence similarity, it is predicted to be involved in the biological process: regulation of transcription, DNA-dependent. 5 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Myc-type, basic helix-loop-helix (bHLH) domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 06-18 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system. Comments on Affy2 ProbeSet: ProbeSet 1623378_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of Oli. Gene sequence location is 2L:17589402..17591267.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 36D1-36D1   Limits computationally determined from genome sequence between P{lacW}Aac11k06710 and P{EP}CG10413EP2164
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Oli for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Oli-RA FBtr0080986  NM_078868   1806   232 Oli-RB FBtr0303252  NM_001201901   1174   232 Oli-RC FBtr0303253  NM_001201902   1068   232
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Oli-PA   FBpp0080539   24.1   232   10.65     NP_523592   AAF53631 Oli-PB   FBpp0292344   24.1   232   10.65     NP_001188830   ADV37079 Oli-PC   FBpp0292345   24.1   232   10.65     NP_001188831   ADV37080
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014134 AAF53631   AE014134 ADV37079   AE014134 ADV37080   AI387220   AW940671   BI483673   BT004905 AAO47883   CK660090   CO179026   CO280246   CO320371   DN154143   EC210696   EC227603   EC235176   EC241732   EC253961
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VJC1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 11 -- 12   central brain primordium   (Fisher et al., 2012) embryonic central brain glial cell   (Fisher et al., 2012) embryonic central brain neuron   (Fisher et al., 2012) embryonic ganglion mother cell   (Fisher et al., 2012) embryonic neuroblast of ventral nerve cord primordium   (Fisher et al., 2012) lateral cord glial cell   (Fisher et al., 2012) lateral cord neuron   (Fisher et al., 2012) procephalic neuroblast   (Fisher et al., 2012) ventral nerve cord primordium   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic brain   (Fisher et al., 2012) embryonic central brain neuron   (Fisher et al., 2012) embryonic/larval nervous system   (Fisher et al., 2012) lateral cord neuron   (Fisher et al., 2012) ventral midline   (Fisher et al., 2012) ventral nerve cord   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    312.65 Larval Midgut    5.4 Larval Hindgut    4.8 Larval Malpighian Tubules    3.8 Larval Fat Body    9 Larval Salivary Gland    4.9 Larval Trachea    1.1 Larval Carcass    3.175 Adult Head    55.5 Adult Eye    23.4 Adult Brain    261.7 Adult Thoracic-Abdominal Ganglion    203.7 Adult Crop    5.2 Adult Midgut    4.9 Adult Hindgut    4.8 Adult Malpighian Tubules    3.9 Adult Fat Body    6.9 Adult Salivary Gland    8.7 Adult Heart    1.3 Adult VirginFemale Spermatheca    4.3 Adult InseminatedFemale Spermatheca    5.2 Adult Ovary    4.5 Adult Testis    26.4 Adult Male Accessory Gland    9.4 Adult Carcass    14.5 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    312.65 Larval Midgut    5.4 Larval Hindgut    4.8 Larval Malpighian Tubules    3.8 Larval Fat Body    9 Larval Salivary Gland    4.9 Larval Trachea    1.1 Larval Carcass    3.175 Adult Head    55.5 Adult Eye    23.4 Adult Brain    261.7 Adult Thoracic-Abdominal Ganglion    203.7 Adult Crop    5.2 Adult Midgut    4.9 Adult Hindgut    4.8 Adult Malpighian Tubules    3.9 Adult Fat Body    6.9 Adult Salivary Gland    8.7 Adult Heart    1.3 Adult VirginFemale Spermatheca    4.3 Adult InseminatedFemale Spermatheca    5.2 Adult Ovary    4.5 Adult Testis    26.4 Adult Male Accessory Gland    9.4 Adult Carcass    14.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    312.65 Larval Midgut    5.4 Larval Hindgut    4.8 Larval Malpighian Tubules    3.8 Larval Fat Body    9 Larval Salivary Gland    4.9 Larval Trachea    1.1 Larval Carcass    3.175 Adult Head    55.5 Adult Eye    23.4 Adult Brain    261.7 Adult Thoracic-Abdominal Ganglion    203.7 Adult Crop    5.2 Adult Midgut    4.9 Adult Hindgut    4.8 Adult Malpighian Tubules    3.9 Adult Fat Body    6.9 Adult Salivary Gland    8.7 Adult Heart    1.3 Adult VirginFemale Spermatheca    4.3 Adult InseminatedFemale Spermatheca    5.2 Adult Ovary    4.5 Adult Testis    26.4 Adult Male Accessory Gland    9.4 Adult Carcass    14.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    312.65 Larval Midgut    5.4 Larval Hindgut    4.8 Larval Malpighian Tubules    3.8 Larval Fat Body    9 Larval Salivary Gland    4.9 Larval Trachea    1.1 Larval Carcass    3.175 Adult Head    55.5 Adult Eye    23.4 Adult Brain    261.7 Adult Thoracic-Abdominal Ganglion    203.7 Adult Crop    5.2 Adult Midgut    4.9 Adult Hindgut    4.8 Adult Malpighian Tubules    3.9 Adult Fat Body    6.9 Adult Salivary Gland    8.7 Adult Heart    1.3 Adult VirginFemale Spermatheca    4.3 Adult InseminatedFemale Spermatheca    5.2 Adult Ovary    4.5 Adult Testis    26.4 Adult Male Accessory Gland    9.4 Adult Carcass    14.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    312.65 Larval Midgut    5.4 Larval Hindgut    4.8 Larval Malpighian Tubules    3.8 Larval Fat Body    9 Larval Salivary Gland    4.9 Larval Trachea    1.1 Larval Carcass    3.175 Adult Head    55.5 Adult Eye    23.4 Adult Brain    261.7 Adult Thoracic-Abdominal Ganglion    203.7 Adult Crop    5.2 Adult Midgut    4.9 Adult Hindgut    4.8 Adult Malpighian Tubules    3.9 Adult Fat Body    6.9 Adult Salivary Gland    8.7 Adult Heart    1.3 Adult VirginFemale Spermatheca    4.3 Adult InseminatedFemale Spermatheca    5.2 Adult Ovary    4.5 Adult Testis    26.4 Adult Male Accessory Gland    9.4 Adult Carcass    14.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    312.65 Larval Midgut    5.4 Larval Hindgut    4.8 Larval Malpighian Tubules    3.8 Larval Fat Body    9 Larval Salivary Gland    4.9 Larval Trachea    1.1 Larval Carcass    3.175 Adult Head    55.5 Adult Eye    23.4 Adult Brain    261.7 Adult Thoracic-Abdominal Ganglion    203.7 Adult Crop    5.2 Adult Midgut    4.9 Adult Hindgut    4.8 Adult Malpighian Tubules    3.9 Adult Fat Body    6.9 Adult Salivary Gland    8.7 Adult Heart    1.3 Adult VirginFemale Spermatheca    4.3 Adult InseminatedFemale Spermatheca    5.2 Adult Ovary    4.5 Adult Testis    26.4 Adult Male Accessory Gland    9.4 Adult Carcass    14.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    312.65 Larval Midgut    5.4 Larval Hindgut    4.8 Larval Malpighian Tubules    3.8 Larval Fat Body    9 Larval Salivary Gland    4.9 Larval Trachea    1.1 Larval Carcass    3.175 Adult Head    55.5 Adult Eye    23.4 Adult Brain    261.7 Adult Thoracic-Abdominal Ganglion    203.7 Adult Crop    5.2 Adult Midgut    4.9 Adult Hindgut    4.8 Adult Malpighian Tubules    3.9 Adult Fat Body    6.9 Adult Salivary Gland    8.7 Adult Heart    1.3 Adult VirginFemale Spermatheca    4.3 Adult InseminatedFemale Spermatheca    5.2 Adult Ovary    4.5 Adult Testis    26.4 Adult Male Accessory Gland    9.4 Adult Carcass    14.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    312.65 Larval Midgut    5.4 Larval Hindgut    4.8 Larval Malpighian Tubules    3.8 Larval Fat Body    9 Larval Salivary Gland    4.9 Larval Trachea    1.1 Larval Carcass    3.175 Adult Head    55.5 Adult Eye    23.4 Adult Brain    261.7 Adult Thoracic-Abdominal Ganglion    203.7 Adult Crop    5.2 Adult Midgut    4.9 Adult Hindgut    4.8 Adult Malpighian Tubules    3.9 Adult Fat Body    6.9 Adult Salivary Gland    8.7 Adult Heart    1.3 Adult VirginFemale Spermatheca    4.3 Adult InseminatedFemale Spermatheca    5.2 Adult Ovary    4.5 Adult Testis    26.4 Adult Male Accessory Gland    9.4 Adult Carcass    14.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    55.5   NA  Eye    23.4   NA  Brain    261.7   312.65  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    203.7   NA  Crop    5.2   5.4  Midgut    4.9   4.8  Hindgut    4.8   3.8  Malpighian Tubules    3.9   9  Fat Body    6.9   4.9  Salivary Gland    8.7   NA  Heart    1.3   1.1  Trachea    NA   NA  VirginFemale Spermatheca    4.3   NA  InseminatedFemale Spermatheca    5.2   NA  Ovary    4.5   NA  Testis    26.4   NA  Male Accessory Gland    9.4   3.175  Carcass    no informative data FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    43 central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    3 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    11 head, mated 4-day male    8 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    6 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3  (43) central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    3 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    11 head, mated 4-day male    8 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    6 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    43 central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    3 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    11 head, mated 4-day male    8 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    6 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    43 central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    3 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    11 head, mated 4-day male    8 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    6 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    43 central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    3 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    11 head, mated 4-day male    8 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    6 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3  (43) central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    3 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    11 head, mated 4-day male    8 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    6 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    43 central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    3 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    11 head, mated 4-day male    8 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    6 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    43 central nervous system, pupae P8    24 head, virgin 1-day female    5 head, virgin 4-day female    3 head, virgin 20-day female    3 head, mated 1-day female    3 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    11 head, mated 4-day male    8 head, mated 20-day male    7 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    6 carcass, larvae L3 wandering    6 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 06-18 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    21 embryo 08-10hr    38 embryo 10-12hr    51 embryo 12-14hr    36 embryo 14-16hr    17 embryo 16-18hr    12 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    3 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    4 white prepupae new    4 white prepupae 12hr    7 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    4 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    21 embryo 08-10hr  (38) embryo 10-12hr  (51) embryo 12-14hr  (36) embryo 14-16hr    17 embryo 16-18hr    12 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    3 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    4 white prepupae new    4 white prepupae 12hr    7 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    4 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    21 embryo 08-10hr    38 embryo 10-12hr    51 embryo 12-14hr    36 embryo 14-16hr    17 embryo 16-18hr    12 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    3 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    4 white prepupae new    4 white prepupae 12hr    7 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    4 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    21 embryo 08-10hr    38 embryo 10-12hr    51 embryo 12-14hr    36 embryo 14-16hr    17 embryo 16-18hr    12 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    3 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    4 white prepupae new    4 white prepupae 12hr    7 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    4 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    21 embryo 08-10hr    38 embryo 10-12hr    51 embryo 12-14hr    36 embryo 14-16hr    17 embryo 16-18hr    12 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    3 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    4 white prepupae new    4 white prepupae 12hr    7 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    4 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    21 embryo 08-10hr  (38) embryo 10-12hr  (51) embryo 12-14hr  (36) embryo 14-16hr    17 embryo 16-18hr    12 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    3 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    4 white prepupae new    4 white prepupae 12hr    7 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    4 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    21 embryo 08-10hr    38 embryo 10-12hr    51 embryo 12-14hr    36 embryo 14-16hr    17 embryo 16-18hr    12 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    3 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    4 white prepupae new    4 white prepupae 12hr    7 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    4 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    2 embryo 06-08hr    21 embryo 08-10hr    38 embryo 10-12hr    51 embryo 12-14hr    36 embryo 14-16hr    17 embryo 16-18hr    12 embryo 18-20hr    8 embryo 20-22hr    4 embryo 22-24hr    5 larva L1    3 larva L2    1 larva L3 12hr old    1 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    3 larva L3 puffstage 7-9    4 white prepupae new    4 white prepupae 12hr    7 white prepupae 24hr    5 pupae 2d postWPP    6 pupae 3d postWPP    4 pupae 4d postWPP    2 adult male 01day    2 adult male 05day    2 adult male 30day    2 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    4 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    2 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    4 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    2 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    4 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    2 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    4 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    2 ovary OSS    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    4 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    2 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    4 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    2 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    4 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    2 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    4 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    2 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    0 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    0 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    0 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    0 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    0 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    0 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    0 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    0 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    2 Cadmium 100 mM 48 hrs, 4-day adult    0 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    1 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    2 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_11 mE1_20_mRNA_expression_cluster_05
External Data & Images
Linkouts	BDGP expression data • GH17679 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032651 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5545-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for Oli Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 OliGD4381 Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of Oli Class Mutagen Stocks Known lesion OliMB06951 1 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Oli Class Mutagen Stocks Known lesion OliGD4381 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes OliHMJ02216 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes OliJF02001 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes OliKK108335 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel7069 (Ryder, 2004.4.26) Df(2L)Exel9044 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD4381} NA P{KK108335} NA P{TRiP.HMJ02216} NA P{TRiP.JF02001} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap binary system Mi{ET1}OliMB06951 No
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
protein dimerization activity inferred from electronic annotation with InterPro:IPR011598 (FlyBase Curators et al., 2004-) sequence-specific DNA binding transcription factor activity inferred from sequence or structural similarity with NCBI_gi:1911497 (FlyBase, 1992-)
Biological Process
CV term Evidence References
regulation of transcription, DNA-dependent inferred from sequence or structural similarity with cato (Peyrefitte et al., 2001)
Cellular Component
CV term Evidence References
nucleus inferred from sequence or structural similarity with NCBI_gi:1911497 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
Oli - CG15220 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - CG15784 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - Cdc5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - FK506-bp2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - GstD1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - Irbp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - Jupiter anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - Ku80 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - LRP1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - Nacα anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - RPA2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - RpLP0 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - Rpb8 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - Rs1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - SC35 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - TFAM anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - l(1)G0320 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - mRpL9 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - nito anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - wal anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Oli - wds anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Oli allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 61062 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0032651 DroID - A comprehensive database of gene and protein interactions. • FBgn0032651 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 35066
Orthologs
OrthoDB Orthologs (59) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6WQ1NZ Dipteran inclusive ortholog search EOG6RJG9P Insect inclusive ortholog search EOG6J9KW9 Arthropod inclusive ortholog search EOG6J6Q78 Metazoa inclusive ortholog search EOG644ZFH
Orthologs in Drosophila Species (EOG6WQ1NZ)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Oli     Drosophila simulans   Dsim\GD24118 Y   Drosophila sechellia   Dsec\GM17248 Y   Drosophila erecta   Dere\GG21094 Y   Drosophila yakuba   Dyak\GE12799 Y   Drosophila ananassae   Dana\GF14803 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA18959 Y   Drosophila persimilis   Dper\GL14513 Y   Drosophila willistoni   Dwil\GK18164 Y   Drosophila virilis   Dvir\GJ17701 Y   Drosophila mojavensis   Dmoj\GI17928 Y   Drosophila grimshawi   Dgri\GH23918     Drosophila grimshawi   Dgri\GH11626 Y
Orthologs in non-Drosophila Dipterans (EOG6RJG9P)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL000341   Anopheles gambiae Malaria mosquito  Agam\AGAP009227   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ000843
Orthologs in non-Dipteran Insects (EOG6J9KW9)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB45050   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG003274   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH21392   Atta cephalotes Leafcutter ant  Acep\ACEP10921   Camponotus floridanus Florida carpenter ant  Cflo\CFLO16762   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL15997   Linepithema humile Argentine ant  Lhum\LH22589   Pogonomyrmex barbatus Red harvester ant  Pbar\PB15464   Solenopsis invicta Red fire ant  Sinv\SINV14285   Acyrthosiphon pisum Pea aphid  Apim\ACYPI000347   Bombyx mori Silkmoth  Bmor\BGIBMGA003134   Pediculus humanus Human body louse  Phum\PHUM507440   Tribolium castaneum Red flour beetle  Tcas\TC014712
Orthologs in non-Insect Arthropods (EOG6J6Q78)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_17020   Ixodes scapularis Deer tick  Isca\ISCW009607
Orthologs in non-Arthropod Metazoa (EOG644ZFH)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\hlh-17   Caenorhabditis elegans Nematode  Cele\hlh-16   Caenorhabditis elegans Nematode  Cele\hlh-32   Caenorhabditis elegans Nematode  Cele\hlh-31   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_002627gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_004028gn   Danio rerio Zebrafish  Drer\olig2   Danio rerio Zebrafish  Drer\olig3   Danio rerio Zebrafish  Drer\bhlhe22   Danio rerio Zebrafish  Drer\bhlhe23   Danio rerio Zebrafish  Drer\olig4   Xenopus tropicalis Western clawed frog  Xtro\olig4   Xenopus tropicalis Western clawed frog  Xtro\olig3   Xenopus tropicalis Western clawed frog  Xtro\bhlhe23   Gallus gallus Domestic chicken  Ggal\OLIG3   Gallus gallus Domestic chicken  Ggal\BHLHE23   Mus musculus House mouse  Mmus\Olig2   Mus musculus House mouse  Mmus\Olig3   Mus musculus House mouse  Mmus\ENSMUSG00000025128   Mus musculus House mouse  Mmus\Bhlhe23   Rattus norvegicus Norway rat  Rnor\Olig2   Rattus norvegicus Norway rat  Rnor\Bhlhe22   Rattus norvegicus Norway rat  Rnor\Bhlhe23   Rattus norvegicus Norway rat  Rnor\Olig3   Homo sapiens Human  Hsap\BHLHE23   Homo sapiens Human  Hsap\BHLHE22   Homo sapiens Human  Hsap\OLIG2   Homo sapiens Human  Hsap\OLIG3
Human Orthologs (4)
Gene OMIM HGNC Hsap\BHLHE23     Hsap\BHLHE22     Hsap\OLIG2     Hsap\OLIG3
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD24118 Drosophila sechellia Dsec\GM17248 Drosophila erecta Dere\GG21094 Drosophila yakuba Dyak\GE12799 Drosophila ananassae Dana\GF14803 Drosophila pseudoobscura pseudoobscura Dpse\GA18959 Drosophila persimilis Dper\GL14513 Drosophila willistoni Dwil\GK18164 Drosophila virilis Dvir\GJ17701 Drosophila mojavensis Dmoj\GI17928 Drosophila grimshawi Dgri\GH11626
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	25341 w1118; Mi{ET1}OliMB06951 42560 y1 v1; P{TRiP.HMJ02216}attP40 25979 y1 v1; P{TRiP.JF02001}attP2/TM3, Sb1
VDRC	v104400 P{KK108335}VIE-260B v13056 w1118; P{GD4381}v13056 v13057 w1118; P{GD4381}v13057/CyO
Genomic Clones ( 1 )
	BACR48K02 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 13 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH17679
Other clones	DPiM_GH17679
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	LP18346 RE66592
Other clones	40116 64960 179616 214473.29 CK01.74A.E5 EK058219 EK153460 EK191416 EK284455
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0032651 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35066
Antibody Information
	polyclonal (Oyallon et al., 2012)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Oli CG5545 (Moore et al., 2000)
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_078868 NM_001201901 NM_001201902 RefSeq (Proteins) • NP_523592 NP_001188830 NP_001188831 DDBJ / EMBL / GenBank • AAF53631 AAO47883 ADV37079 ADV37080 AI387220 AW940671 BT004905 Entrez Gene - A searchable database of RefSeq genes. • 35066 UniProtKB/TrEMBL • Q9VJC1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GH17679
Linkouts
	BioGRID - A database of protein and genetic interactions • 61062 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0032651 DroID - A comprehensive database of gene and protein interactions. • FBgn0032651 DRSC - Results from RNAi screens. • FBgn0032651 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032651 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5545-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0032651 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35066 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 35066 modMine - Data generated by the modENCODE project. • FBgn0032651
Synonyms & Secondary IDs ( 7 )
Reported As
Symbol Synonym	bHLHb23 (Stevens et al., 2008) CG5545 (Peyrefitte et al., 2001, Ledent and Vervoort, 2001, Moore et al., 2000, Perkins et al., 1.15.2009, Stevens et al., 2008, Stevens et al., 2008, Keleman et al., 2009.8.5, Ni et al., 2010.12.1) Doli (Peyrefitte et al., 2001, Moore et al., 2000) Oli (Brodsky et al., 2004, Peng et al., 2007, Wheeler et al., 2009, Nfonsam et al., 2012, Manning et al., 2012) oli (Oyallon et al., 2012) Olig (Zhang et al., 2008)
Name Synonym	Olig family (Moore et al., 2000)
Secondary FlyBase IDs
References ( 36 )
Generate a list of	All references relating to this gene ( 36 )
List References by type	Research paper  ( 16 ) Supplementary material  ( 5 ) Review  ( 1 ) Personal communication to FlyBase  ( 9 ) FlyBase analysis  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 3 )
	Manning et al., 2012, Cell Rep. 2(4): 1002--1013 A Resource for Manipulating Gene Expression and Analyzing cis-Regulatory Modules in the Drosophila CNS. [FBrf0219785] Nfonsam et al., 2012, PLoS ONE 7(8): e44583 Analysis of the Transcriptomes Downstream of Eyeless and the Hedgehog, Decapentaplegic and Notch Signaling Pathways in Drosophila melanogaster. [FBrf0219414] Oyallon et al., 2012, Dev. Biol. 369(2): 261--276 Regulation of locomotion and motoneuron trajectory selection and targeting by the Drosophila homolog of Olig family transcription factors. [FBrf0219228] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...