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Gene Dmel\CG10341

General Information
Symbol	Dmel\CG10341	Species	D. melanogaster
Name		Annotation symbol	CG10341
Feature type	protein_coding_gene	FlyBase ID	FBgn0032701
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	37A1-37A1	Sequence location	2L:18,698,714..18,700,645 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG10341 (FBgn0032701). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: snoRNA binding. There is experimental evidence that it is involved in the biological process: neurogenesis. 5 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: H/ACA ribonucleoprotein complex, subunit Gar1/Naf1; Translation elongation/initiation factor/Ribosomal, beta-barrel. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 06-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval/adult midgut, adult salivary gland, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1634705_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG10341. Gene sequence location is 2L:18698719..18700645.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03	Polypeptides CG10341-PC Transcripts CG10341-RC
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 37A1-37A1   Limits computationally determined from genome sequence between P{EP}CG10413EP2164 and P{lacW}l(2)37Dbk16106&P{lacW}Catsupk05424
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG10341 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.51
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG10341-RA FBtr0081097  NM_136054   1873   564 CG10341-RC FBtr0343109     1870   563
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG10341-PA   FBpp0080647   62.3   564   4.32     NP_609898   AAF53693 CG10341-PC   FBpp0309810   62.1   563   4.34
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 (IPR007504) Translation elongation/initiation factor/Ribosomal, beta-barrel (IPR009000)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA539052   AA695370   AA696945   AA801758   AE014134 AAF53693   AI403857   AW940902   AY051589 AAK93013   BI355582   BI355789   BI374977   BI637806   BI640051   CO311112   CZ490489   EC076891   EC088684   EC204003   EC248081   FE862780   FE862840   FE862874   FE863027   FE863067   FE863120   GH740210   GH743458   GH745774   GH746212   GH762407   GH763708   GH765404   GH766963   GH767298   GH768934   GH769795
UniProtKB/Swiss-Prot	Q9VJ62
UniProtKB/TrEMBL	A8DZ16
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism   (Fisher et al., 2012) embryonic stage 7 -- 8   anterior endoderm anlage   (Fisher et al., 2012) foregut anlage   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) hindgut anlage   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) hindgut proper primordium   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) proventriculus primordium   (Fisher et al., 2012) salivary gland body primordium   (Fisher et al., 2012) somatic muscle primordium   (Fisher et al., 2012) Comment:reported as muscle system primordium visceral muscle primordium   (Fisher et al., 2012) Comment:reported as muscle system primordium trunk mesoderm   (Fisher et al., 2012) embryonic stage 13 -- 16   dorsal pharyngeal muscle   (Fisher et al., 2012) embryonic anal pad   (Fisher et al., 2012) embryonic hindgut   (Fisher et al., 2012) embryonic/larval lymph gland   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval muscle system   (Fisher et al., 2012) gonad   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval/adult midgut, adult salivary gland, adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    134.75 Larval Midgut    131.3 Larval Hindgut    85 Larval Malpighian Tubules    37.5 Larval Fat Body    19.9 Larval Salivary Gland    65.6 Larval Trachea    93.05 Larval Carcass    68.075 Adult Head    58 Adult Eye    48.7 Adult Brain    45.7 Adult Thoracic-Abdominal Ganglion    32 Adult Crop    45.2 Adult Midgut    151.3 Adult Hindgut    48 Adult Malpighian Tubules    84.3 Adult Fat Body    98.3 Adult Salivary Gland    145.5 Adult Heart    56.7 Adult VirginFemale Spermatheca    75.9 Adult InseminatedFemale Spermatheca    70.3 Adult Ovary    123 Adult Testis    18.7 Adult Male Accessory Gland    89.7 Adult Carcass    67.2 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    134.75 Larval Midgut    131.3 Larval Hindgut    85 Larval Malpighian Tubules    37.5 Larval Fat Body    19.9 Larval Salivary Gland    65.6 Larval Trachea    93.05 Larval Carcass    68.075 Adult Head    58 Adult Eye    48.7 Adult Brain    45.7 Adult Thoracic-Abdominal Ganglion    32 Adult Crop    45.2 Adult Midgut    151.3 Adult Hindgut    48 Adult Malpighian Tubules    84.3 Adult Fat Body    98.3 Adult Salivary Gland    145.5 Adult Heart    56.7 Adult VirginFemale Spermatheca    75.9 Adult InseminatedFemale Spermatheca    70.3 Adult Ovary    123 Adult Testis    18.7 Adult Male Accessory Gland    89.7 Adult Carcass    67.2 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    134.75 Larval Midgut    131.3 Larval Hindgut    85 Larval Malpighian Tubules    37.5 Larval Fat Body    19.9 Larval Salivary Gland    65.6 Larval Trachea    93.05 Larval Carcass    68.075 Adult Head    58 Adult Eye    48.7 Adult Brain    45.7 Adult Thoracic-Abdominal Ganglion    32 Adult Crop    45.2 Adult Midgut    151.3 Adult Hindgut    48 Adult Malpighian Tubules    84.3 Adult Fat Body    98.3 Adult Salivary Gland    145.5 Adult Heart    56.7 Adult VirginFemale Spermatheca    75.9 Adult InseminatedFemale Spermatheca    70.3 Adult Ovary    123 Adult Testis    18.7 Adult Male Accessory Gland    89.7 Adult Carcass    67.2 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    134.75 Larval Midgut    131.3 Larval Hindgut    85 Larval Malpighian Tubules    37.5 Larval Fat Body    19.9 Larval Salivary Gland    65.6 Larval Trachea    93.05 Larval Carcass    68.075 Adult Head    58 Adult Eye    48.7 Adult Brain    45.7 Adult Thoracic-Abdominal Ganglion    32 Adult Crop    45.2 Adult Midgut    151.3 Adult Hindgut    48 Adult Malpighian Tubules    84.3 Adult Fat Body    98.3 Adult Salivary Gland    145.5 Adult Heart    56.7 Adult VirginFemale Spermatheca    75.9 Adult InseminatedFemale Spermatheca    70.3 Adult Ovary    123 Adult Testis    18.7 Adult Male Accessory Gland    89.7 Adult Carcass    67.2 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    134.75 Larval Midgut    131.3 Larval Hindgut    85 Larval Malpighian Tubules    37.5 Larval Fat Body    19.9 Larval Salivary Gland    65.6 Larval Trachea    93.05 Larval Carcass    68.075 Adult Head    58 Adult Eye    48.7 Adult Brain    45.7 Adult Thoracic-Abdominal Ganglion    32 Adult Crop    45.2 Adult Midgut    151.3 Adult Hindgut    48 Adult Malpighian Tubules    84.3 Adult Fat Body    98.3 Adult Salivary Gland    145.5 Adult Heart    56.7 Adult VirginFemale Spermatheca    75.9 Adult InseminatedFemale Spermatheca    70.3 Adult Ovary    123 Adult Testis    18.7 Adult Male Accessory Gland    89.7 Adult Carcass    67.2 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    134.75 Larval Midgut    131.3 Larval Hindgut    85 Larval Malpighian Tubules    37.5 Larval Fat Body    19.9 Larval Salivary Gland    65.6 Larval Trachea    93.05 Larval Carcass    68.075 Adult Head    58 Adult Eye    48.7 Adult Brain    45.7 Adult Thoracic-Abdominal Ganglion    32 Adult Crop    45.2 Adult Midgut    151.3 Adult Hindgut    48 Adult Malpighian Tubules    84.3 Adult Fat Body    98.3 Adult Salivary Gland    145.5 Adult Heart    56.7 Adult VirginFemale Spermatheca    75.9 Adult InseminatedFemale Spermatheca    70.3 Adult Ovary    123 Adult Testis    18.7 Adult Male Accessory Gland    89.7 Adult Carcass    67.2 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    134.75 Larval Midgut    131.3 Larval Hindgut    85 Larval Malpighian Tubules    37.5 Larval Fat Body    19.9 Larval Salivary Gland    65.6 Larval Trachea    93.05 Larval Carcass    68.075 Adult Head    58 Adult Eye    48.7 Adult Brain    45.7 Adult Thoracic-Abdominal Ganglion    32 Adult Crop    45.2 Adult Midgut    151.3 Adult Hindgut    48 Adult Malpighian Tubules    84.3 Adult Fat Body    98.3 Adult Salivary Gland    145.5 Adult Heart    56.7 Adult VirginFemale Spermatheca    75.9 Adult InseminatedFemale Spermatheca    70.3 Adult Ovary    123 Adult Testis    18.7 Adult Male Accessory Gland    89.7 Adult Carcass    67.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    134.75 Larval Midgut    131.3 Larval Hindgut    85 Larval Malpighian Tubules    37.5 Larval Fat Body    19.9 Larval Salivary Gland    65.6 Larval Trachea    93.05 Larval Carcass    68.075 Adult Head    58 Adult Eye    48.7 Adult Brain    45.7 Adult Thoracic-Abdominal Ganglion    32 Adult Crop    45.2 Adult Midgut    151.3 Adult Hindgut    48 Adult Malpighian Tubules    84.3 Adult Fat Body    98.3 Adult Salivary Gland    145.5 Adult Heart    56.7 Adult VirginFemale Spermatheca    75.9 Adult InseminatedFemale Spermatheca    70.3 Adult Ovary    123 Adult Testis    18.7 Adult Male Accessory Gland    89.7 Adult Carcass    67.2 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    58   NA  Eye    48.7   NA  Brain    45.7   134.75  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    32   NA  Crop    45.2   131.3  Midgut    151.3   85  Hindgut    48   37.5  Malpighian Tubules    84.3   no informative data  Fat Body    98.3   65.6  Salivary Gland    145.5   NA  Heart    56.7   93.05  Trachea    NA   NA  VirginFemale Spermatheca    75.9   NA  InseminatedFemale Spermatheca    70.3   NA  Ovary    123   NA  Testis    18.7   NA  Male Accessory Gland    89.7   68.075  Carcass    67.2 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    29 central nervous system, pupae P8    19 head, virgin 1-day female    22 head, virgin 4-day female    33 head, virgin 20-day female    24 head, mated 1-day female    20 head, mated 4-day female    33 head, mated 20-day female    21 head, mated 1-day male    25 head, mated 4-day male    35 head, mated 20-day male    38 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    34 digestive system, 1-day adult    36 digestive system, 4-day adult    32 digestive system, 20-day adult    37 fat body, larvae L3 wandering    8 fat body, white prepupae    7 fat body, pupae P8    6 carcass, larvae L3 wandering    33 carcass, 1-day adult    16 carcass, 4-day adult    23 carcass, 20-day adult    27 ovary, virgin 4-day female    30 ovary, mated 4-day female    37 testis, mated 4-day male    14 accessory gland, mated 4-day male    22 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (31) central nervous system, larvae L3  (29) central nervous system, pupae P8    19 head, virgin 1-day female    22 head, virgin 4-day female  (33) head, virgin 20-day female    24 head, mated 1-day female    20 head, mated 4-day female  (33) head, mated 20-day female    21 head, mated 1-day male    25 head, mated 4-day male  (35) head, mated 20-day male  (38) salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering  (34) digestive system, 1-day adult  (36) digestive system, 4-day adult  (32) digestive system, 20-day adult  (37) fat body, larvae L3 wandering    8 fat body, white prepupae    7 fat body, pupae P8    6 carcass, larvae L3 wandering  (33) carcass, 1-day adult    16 carcass, 4-day adult    23 carcass, 20-day adult  (27) ovary, virgin 4-day female  (30) ovary, mated 4-day female  (37) testis, mated 4-day male    14 accessory gland, mated 4-day male    22 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    29 central nervous system, pupae P8    19 head, virgin 1-day female    22 head, virgin 4-day female    33 head, virgin 20-day female    24 head, mated 1-day female    20 head, mated 4-day female    33 head, mated 20-day female    21 head, mated 1-day male    25 head, mated 4-day male    35 head, mated 20-day male    38 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    34 digestive system, 1-day adult    36 digestive system, 4-day adult    32 digestive system, 20-day adult    37 fat body, larvae L3 wandering    8 fat body, white prepupae    7 fat body, pupae P8    6 carcass, larvae L3 wandering    33 carcass, 1-day adult    16 carcass, 4-day adult    23 carcass, 20-day adult    27 ovary, virgin 4-day female    30 ovary, mated 4-day female    37 testis, mated 4-day male    14 accessory gland, mated 4-day male    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    29 central nervous system, pupae P8    19 head, virgin 1-day female    22 head, virgin 4-day female    33 head, virgin 20-day female    24 head, mated 1-day female    20 head, mated 4-day female    33 head, mated 20-day female    21 head, mated 1-day male    25 head, mated 4-day male    35 head, mated 20-day male    38 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    34 digestive system, 1-day adult    36 digestive system, 4-day adult    32 digestive system, 20-day adult    37 fat body, larvae L3 wandering    8 fat body, white prepupae    7 fat body, pupae P8    6 carcass, larvae L3 wandering    33 carcass, 1-day adult    16 carcass, 4-day adult    23 carcass, 20-day adult    27 ovary, virgin 4-day female    30 ovary, mated 4-day female    37 testis, mated 4-day male    14 accessory gland, mated 4-day male    22 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    29 central nervous system, pupae P8    19 head, virgin 1-day female    22 head, virgin 4-day female    33 head, virgin 20-day female    24 head, mated 1-day female    20 head, mated 4-day female    33 head, mated 20-day female    21 head, mated 1-day male    25 head, mated 4-day male    35 head, mated 20-day male    38 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    34 digestive system, 1-day adult    36 digestive system, 4-day adult    32 digestive system, 20-day adult    37 fat body, larvae L3 wandering    8 fat body, white prepupae    7 fat body, pupae P8    6 carcass, larvae L3 wandering    33 carcass, 1-day adult    16 carcass, 4-day adult    23 carcass, 20-day adult    27 ovary, virgin 4-day female    30 ovary, mated 4-day female    37 testis, mated 4-day male    14 accessory gland, mated 4-day male    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  31 central nervous system, larvae L3  29 central nervous system, pupae P8    19 head, virgin 1-day female    22 head, virgin 4-day female  (33) head, virgin 20-day female    24 head, mated 1-day female    20 head, mated 4-day female  (33) head, mated 20-day female    21 head, mated 1-day male    25 head, mated 4-day male  (35) head, mated 20-day male  (38) salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering  (34) digestive system, 1-day adult  (36) digestive system, 4-day adult  32 digestive system, 20-day adult  (37) fat body, larvae L3 wandering    8 fat body, white prepupae    7 fat body, pupae P8    6 carcass, larvae L3 wandering  (33) carcass, 1-day adult    16 carcass, 4-day adult    23 carcass, 20-day adult  27 ovary, virgin 4-day female  30 ovary, mated 4-day female  (37) testis, mated 4-day male    14 accessory gland, mated 4-day male    22 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    29 central nervous system, pupae P8    19 head, virgin 1-day female    22 head, virgin 4-day female    33 head, virgin 20-day female    24 head, mated 1-day female    20 head, mated 4-day female    33 head, mated 20-day female    21 head, mated 1-day male    25 head, mated 4-day male    35 head, mated 20-day male    38 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    34 digestive system, 1-day adult    36 digestive system, 4-day adult    32 digestive system, 20-day adult    37 fat body, larvae L3 wandering    8 fat body, white prepupae    7 fat body, pupae P8    6 carcass, larvae L3 wandering    33 carcass, 1-day adult    16 carcass, 4-day adult    23 carcass, 20-day adult    27 ovary, virgin 4-day female    30 ovary, mated 4-day female    37 testis, mated 4-day male    14 accessory gland, mated 4-day male    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    31 central nervous system, larvae L3    29 central nervous system, pupae P8    19 head, virgin 1-day female    22 head, virgin 4-day female    33 head, virgin 20-day female    24 head, mated 1-day female    20 head, mated 4-day female    33 head, mated 20-day female    21 head, mated 1-day male    25 head, mated 4-day male    35 head, mated 20-day male    38 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    34 digestive system, 1-day adult    36 digestive system, 4-day adult    32 digestive system, 20-day adult    37 fat body, larvae L3 wandering    8 fat body, white prepupae    7 fat body, pupae P8    6 carcass, larvae L3 wandering    33 carcass, 1-day adult    16 carcass, 4-day adult    23 carcass, 20-day adult    27 ovary, virgin 4-day female    30 ovary, mated 4-day female    37 testis, mated 4-day male    14 accessory gland, mated 4-day male    22 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 06-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr    36 embryo 04-06hr    48 embryo 06-08hr    57 embryo 08-10hr    49 embryo 10-12hr    37 embryo 12-14hr    30 embryo 14-16hr    25 embryo 16-18hr    21 embryo 18-20hr    21 embryo 20-22hr    39 embryo 22-24hr    34 larva L1    52 larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    14 white prepupae new    11 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    9 pupae 3d postWPP    5 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    10 adult male 30day    11 adult female 01day    30 adult female 05day    25 adult female 30day    28 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr  (36) embryo 04-06hr  (48) embryo 06-08hr  (57) embryo 08-10hr  (49) embryo 10-12hr  (37) embryo 12-14hr  (30) embryo 14-16hr    25 embryo 16-18hr    21 embryo 18-20hr    21 embryo 20-22hr  (39) embryo 22-24hr  (34) larva L1  (52) larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    14 white prepupae new    11 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    9 pupae 3d postWPP    5 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    10 adult male 30day    11 adult female 01day  (30) adult female 05day    25 adult female 30day  (28) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr    36 embryo 04-06hr    48 embryo 06-08hr    57 embryo 08-10hr    49 embryo 10-12hr    37 embryo 12-14hr    30 embryo 14-16hr    25 embryo 16-18hr    21 embryo 18-20hr    21 embryo 20-22hr    39 embryo 22-24hr    34 larva L1    52 larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    14 white prepupae new    11 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    9 pupae 3d postWPP    5 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    10 adult male 30day    11 adult female 01day    30 adult female 05day    25 adult female 30day    28 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr    36 embryo 04-06hr    48 embryo 06-08hr    57 embryo 08-10hr    49 embryo 10-12hr    37 embryo 12-14hr    30 embryo 14-16hr    25 embryo 16-18hr    21 embryo 18-20hr    21 embryo 20-22hr    39 embryo 22-24hr    34 larva L1    52 larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    14 white prepupae new    11 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    9 pupae 3d postWPP    5 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    10 adult male 30day    11 adult female 01day    30 adult female 05day    25 adult female 30day    28 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr    36 embryo 04-06hr    48 embryo 06-08hr    57 embryo 08-10hr    49 embryo 10-12hr    37 embryo 12-14hr    30 embryo 14-16hr    25 embryo 16-18hr    21 embryo 18-20hr    21 embryo 20-22hr    39 embryo 22-24hr    34 larva L1    52 larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    14 white prepupae new    11 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    9 pupae 3d postWPP    5 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    10 adult male 30day    11 adult female 01day    30 adult female 05day    25 adult female 30day    28 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr  (36) embryo 04-06hr  (48) embryo 06-08hr  (57) embryo 08-10hr  (49) embryo 10-12hr  (37) embryo 12-14hr  30 embryo 14-16hr    25 embryo 16-18hr    21 embryo 18-20hr    21 embryo 20-22hr  (39) embryo 22-24hr  (34) larva L1  (52) larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    14 white prepupae new    11 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    9 pupae 3d postWPP    5 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    10 adult male 30day    11 adult female 01day  30 adult female 05day    25 adult female 30day  28 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr    36 embryo 04-06hr    48 embryo 06-08hr    57 embryo 08-10hr    49 embryo 10-12hr    37 embryo 12-14hr    30 embryo 14-16hr    25 embryo 16-18hr    21 embryo 18-20hr    21 embryo 20-22hr    39 embryo 22-24hr    34 larva L1    52 larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    14 white prepupae new    11 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    9 pupae 3d postWPP    5 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    10 adult male 30day    11 adult female 01day    30 adult female 05day    25 adult female 30day    28 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    22 embryo 02-04hr    36 embryo 04-06hr    48 embryo 06-08hr    57 embryo 08-10hr    49 embryo 10-12hr    37 embryo 12-14hr    30 embryo 14-16hr    25 embryo 16-18hr    21 embryo 18-20hr    21 embryo 20-22hr    39 embryo 22-24hr    34 larva L1    52 larva L2    18 larva L3 12hr old    14 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    14 white prepupae new    11 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    9 pupae 3d postWPP    5 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    10 adult male 30day    11 adult female 01day    30 adult female 05day    25 adult female 30day    28 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    49 Schneider line 2 Sg4    35 embryonic 1182-4H    44 embryonic GM2    22 embryonic Kc167    28 embryonic S1    80 embryonic S3    40 leg disc CME L1    46 wing disc CME-W2    36 wing disc ML-DmD8    42 wing disc ML-DmD9    56 wing disc ML-DmD16-c3    49 wing disc ML-DmD21    44 wing disc ML-DmD32    31 haltere disc ML-DmD17-c3    34 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    42 mixed discs ML-DmD4-c1    48 CNS ML-DmBG1-c1    51 CNS ML-DmBG2-c2    71 tumorous blood cells mbn2    57 ovary fGS/OSS    42 ovary OSC    35 ovary OSS    35 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (49) Schneider line 2 Sg4  (35) embryonic 1182-4H  (44) embryonic GM2    22 embryonic Kc167  (28) embryonic S1  (80) embryonic S3  (40) leg disc CME L1  (46) wing disc CME-W2  (36) wing disc ML-DmD8  (42) wing disc ML-DmD9  (56) wing disc ML-DmD16-c3  (49) wing disc ML-DmD21  (44) wing disc ML-DmD32  (31) haltere disc ML-DmD17-c3  (34) eye-antennal disc ML-DmD11  (48) antennal disc ML-DmD20-c5  (42) mixed discs ML-DmD4-c1  (48) CNS ML-DmBG1-c1  (51) CNS ML-DmBG2-c2  (71) tumorous blood cells mbn2  (57) ovary fGS/OSS  (42) ovary OSC  (35) ovary OSS  (35) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    49 Schneider line 2 Sg4    35 embryonic 1182-4H    44 embryonic GM2    22 embryonic Kc167    28 embryonic S1    80 embryonic S3    40 leg disc CME L1    46 wing disc CME-W2    36 wing disc ML-DmD8    42 wing disc ML-DmD9    56 wing disc ML-DmD16-c3    49 wing disc ML-DmD21    44 wing disc ML-DmD32    31 haltere disc ML-DmD17-c3    34 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    42 mixed discs ML-DmD4-c1    48 CNS ML-DmBG1-c1    51 CNS ML-DmBG2-c2    71 tumorous blood cells mbn2    57 ovary fGS/OSS    42 ovary OSC    35 ovary OSS    35 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    49 Schneider line 2 Sg4    35 embryonic 1182-4H    44 embryonic GM2    22 embryonic Kc167    28 embryonic S1    80 embryonic S3    40 leg disc CME L1    46 wing disc CME-W2    36 wing disc ML-DmD8    42 wing disc ML-DmD9    56 wing disc ML-DmD16-c3    49 wing disc ML-DmD21    44 wing disc ML-DmD32    31 haltere disc ML-DmD17-c3    34 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    42 mixed discs ML-DmD4-c1    48 CNS ML-DmBG1-c1    51 CNS ML-DmBG2-c2    71 tumorous blood cells mbn2    57 ovary fGS/OSS    42 ovary OSC    35 ovary OSS    35 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    49 Schneider line 2 Sg4    35 embryonic 1182-4H    44 embryonic GM2    22 embryonic Kc167    28 embryonic S1    80 embryonic S3    40 leg disc CME L1    46 wing disc CME-W2    36 wing disc ML-DmD8    42 wing disc ML-DmD9    56 wing disc ML-DmD16-c3    49 wing disc ML-DmD21    44 wing disc ML-DmD32    31 haltere disc ML-DmD17-c3    34 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    42 mixed discs ML-DmD4-c1    48 CNS ML-DmBG1-c1    51 CNS ML-DmBG2-c2    71 tumorous blood cells mbn2    57 ovary fGS/OSS    42 ovary OSC    35 ovary OSS    35 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (49) Schneider line 2 Sg4  (35) embryonic 1182-4H  (44) embryonic GM2    22 embryonic Kc167  28 embryonic S1  (80) embryonic S3  (40) leg disc CME L1  (46) wing disc CME-W2  (36) wing disc ML-DmD8  (42) wing disc ML-DmD9  (56) wing disc ML-DmD16-c3  (49) wing disc ML-DmD21  (44) wing disc ML-DmD32  31 haltere disc ML-DmD17-c3  (34) eye-antennal disc ML-DmD11  (48) antennal disc ML-DmD20-c5  (42) mixed discs ML-DmD4-c1  (48) CNS ML-DmBG1-c1  (51) CNS ML-DmBG2-c2  (71) tumorous blood cells mbn2  (57) ovary fGS/OSS  (42) ovary OSC  (35) ovary OSS  (35) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    49 Schneider line 2 Sg4    35 embryonic 1182-4H    44 embryonic GM2    22 embryonic Kc167    28 embryonic S1    80 embryonic S3    40 leg disc CME L1    46 wing disc CME-W2    36 wing disc ML-DmD8    42 wing disc ML-DmD9    56 wing disc ML-DmD16-c3    49 wing disc ML-DmD21    44 wing disc ML-DmD32    31 haltere disc ML-DmD17-c3    34 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    42 mixed discs ML-DmD4-c1    48 CNS ML-DmBG1-c1    51 CNS ML-DmBG2-c2    71 tumorous blood cells mbn2    57 ovary fGS/OSS    42 ovary OSC    35 ovary OSS    35 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    49 Schneider line 2 Sg4    35 embryonic 1182-4H    44 embryonic GM2    22 embryonic Kc167    28 embryonic S1    80 embryonic S3    40 leg disc CME L1    46 wing disc CME-W2    36 wing disc ML-DmD8    42 wing disc ML-DmD9    56 wing disc ML-DmD16-c3    49 wing disc ML-DmD21    44 wing disc ML-DmD32    31 haltere disc ML-DmD17-c3    34 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    42 mixed discs ML-DmD4-c1    48 CNS ML-DmBG1-c1    51 CNS ML-DmBG2-c2    71 tumorous blood cells mbn2    57 ovary fGS/OSS    42 ovary OSC    35 ovary OSS    35 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    28 cold shock, 4-day adult    17 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    31 Cadmium 100 mM 48 hrs, 4-day adult    41 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    22 Zinc 4.5 mM 48 hrs, 4-day adult    33 Ethanol 2.5% 3 hrs, larvae L3    33 Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    35 Caffeine 25 mg/ml 48 hrs, 4-day adult    22 Paraquat 5 mM 48 hrs, 4-day adult    30 Paraquat 10 mM 48 hrs, 4-day adult    48 Rotenone 2 μg 12 hrs, larvae L3    27 Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (28) cold shock, 4-day adult    17 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult  (31) Cadmium 100 mM 48 hrs, 4-day adult  (41) Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    22 Zinc 4.5 mM 48 hrs, 4-day adult  (33) Ethanol 2.5% 3 hrs, larvae L3  (33) Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (35) Caffeine 25 mg/ml 48 hrs, 4-day adult    22 Paraquat 5 mM 48 hrs, 4-day adult  (30) Paraquat 10 mM 48 hrs, 4-day adult  (48) Rotenone 2 μg 12 hrs, larvae L3  (27) Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    28 cold shock, 4-day adult    17 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    31 Cadmium 100 mM 48 hrs, 4-day adult    41 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    22 Zinc 4.5 mM 48 hrs, 4-day adult    33 Ethanol 2.5% 3 hrs, larvae L3    33 Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    35 Caffeine 25 mg/ml 48 hrs, 4-day adult    22 Paraquat 5 mM 48 hrs, 4-day adult    30 Paraquat 10 mM 48 hrs, 4-day adult    48 Rotenone 2 μg 12 hrs, larvae L3    27 Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    28 cold shock, 4-day adult    17 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    31 Cadmium 100 mM 48 hrs, 4-day adult    41 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    22 Zinc 4.5 mM 48 hrs, 4-day adult    33 Ethanol 2.5% 3 hrs, larvae L3    33 Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    35 Caffeine 25 mg/ml 48 hrs, 4-day adult    22 Paraquat 5 mM 48 hrs, 4-day adult    30 Paraquat 10 mM 48 hrs, 4-day adult    48 Rotenone 2 μg 12 hrs, larvae L3    27 Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    28 cold shock, 4-day adult    17 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    31 Cadmium 100 mM 48 hrs, 4-day adult    41 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    22 Zinc 4.5 mM 48 hrs, 4-day adult    33 Ethanol 2.5% 3 hrs, larvae L3    33 Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    35 Caffeine 25 mg/ml 48 hrs, 4-day adult    22 Paraquat 5 mM 48 hrs, 4-day adult    30 Paraquat 10 mM 48 hrs, 4-day adult    48 Rotenone 2 μg 12 hrs, larvae L3    27 Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  28 cold shock, 4-day adult    17 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult  31 Cadmium 100 mM 48 hrs, 4-day adult  (41) Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    22 Zinc 4.5 mM 48 hrs, 4-day adult  (33) Ethanol 2.5% 3 hrs, larvae L3  (33) Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (35) Caffeine 25 mg/ml 48 hrs, 4-day adult    22 Paraquat 5 mM 48 hrs, 4-day adult  30 Paraquat 10 mM 48 hrs, 4-day adult  (48) Rotenone 2 μg 12 hrs, larvae L3  27 Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    28 cold shock, 4-day adult    17 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    31 Cadmium 100 mM 48 hrs, 4-day adult    41 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    22 Zinc 4.5 mM 48 hrs, 4-day adult    33 Ethanol 2.5% 3 hrs, larvae L3    33 Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    35 Caffeine 25 mg/ml 48 hrs, 4-day adult    22 Paraquat 5 mM 48 hrs, 4-day adult    30 Paraquat 10 mM 48 hrs, 4-day adult    48 Rotenone 2 μg 12 hrs, larvae L3    27 Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    28 cold shock, 4-day adult    17 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    13 Cadmium 50 mM 12 hrs, larvae L3    17 Cadmium 50 mM 48 hrs, 4-day adult    31 Cadmium 100 mM 48 hrs, 4-day adult    41 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    23 Zinc 5 mM 12 hrs, larvae L3    22 Zinc 4.5 mM 48 hrs, 4-day adult    33 Ethanol 2.5% 3 hrs, larvae L3    33 Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3    24 Caffeine 1.5 mg/ml 4 hrs, larvae L3    17 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    35 Caffeine 25 mg/ml 48 hrs, 4-day adult    22 Paraquat 5 mM 48 hrs, 4-day adult    30 Paraquat 10 mM 48 hrs, 4-day adult    48 Rotenone 2 μg 12 hrs, larvae L3    27 Rotenone 8 μg 12 hrs, larvae L3    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_08 mE1_20_mRNA_expression_cluster_04
External Data & Images
Linkouts	BDGP expression data • GH23387 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032701 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG10341-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG10341 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal CG10341GD6948 Other Phenotypes Allele neuroanatomy defective | larval stage CG10341GD6948 Phenotype manifest in Allele ganglion mother cell | larval stage CG10341GD6948
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG10341 Class Mutagen Stocks Known lesion CG10341f07749 piggyBac transposase 3 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG10341 Class Mutagen Stocks Known lesion CG10341GD6948 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG10341GL01235 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG10341KK101137 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes CG10341NIG.10341R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel6041 (Ryder, 2004.4.26) Df(2L)Exel7071 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD6948} NA P{KK101137} NA P{NIG.10341R} NA P{TRiP.GL01235} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{WH}CG10341f07749 NA
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
neurogenesis inferred from mutant phenotype (Neumüller et al., 2011)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
snoRNA binding inferred from electronic annotation with InterPro:IPR007504 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
ribosome biogenesis inferred from electronic annotation with InterPro:IPR007504 (FlyBase Curators et al., 2004-) snRNA pseudouridine synthesis inferred from electronic annotation with InterPro:IPR007504 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG10341 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 61119 DroID - A comprehensive database of gene and protein interactions. • FBgn0032701 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 35125
Orthologs
OrthoDB Orthologs (39) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG63FHH7 Dipteran inclusive ortholog search EOG6933SW Insect inclusive ortholog search EOG695XN3 Arthropod inclusive ortholog search EOG6ZKH2M Metazoa inclusive ortholog search EOG6C00Z8
Orthologs in Drosophila Species (EOG63FHH7)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG10341     Drosophila simulans   Dsim\GD24151 Y   Drosophila sechellia   Dsec\GM17288 Y   Drosophila erecta   Dere\GG21127 Y   Drosophila yakuba   Dyak\GE13201 Y   Drosophila ananassae   Dana\GF15068 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA10257 Y   Drosophila persimilis   Dper\GL19631 Y   Drosophila willistoni   Dwil\GK24689 Y   Drosophila virilis   Dvir\GJ17682 Y   Drosophila mojavensis   Dmoj\GI17911 Y   Drosophila grimshawi   Dgri\GH11607 Y
Orthologs in non-Drosophila Dipterans (EOG6933SW)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL002843   Anopheles gambiae Malaria mosquito  Agam\AGAP011831   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ006473   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ016781
Orthologs in non-Dipteran Insects (EOG695XN3)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB54583   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG006556   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH10769   Atta cephalotes Leafcutter ant  Acep\ACEP13558   Camponotus floridanus Florida carpenter ant  Cflo\CFLO16931   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL21032   Linepithema humile Argentine ant  Lhum\LH22415   Pogonomyrmex barbatus Red harvester ant  Pbar\PB17299   Solenopsis invicta Red fire ant  Sinv\SINV15173   Acyrthosiphon pisum Pea aphid  Apim\ACYPI001893   Bombyx mori Silkmoth  Bmor\BGIBMGA007440   Pediculus humanus Human body louse  Phum\PHUM458520   Tribolium castaneum Red flour beetle  Tcas\TC005517
Orthologs in non-Insect Arthropods (EOG6ZKH2M)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\COII   Daphnia pulex Water flea  Dpux\RAG2   Daphnia pulex Water flea  Dpux\HA1
Orthologs in non-Arthropod Metazoa (EOG6C00Z8)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\F25H8.2   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_023326gn   Danio rerio Zebrafish  Drer\ENSDARG00000057929   Gallus gallus Domestic chicken  Ggal\NAF1   Mus musculus House mouse  Mmus\Naf1   Rattus norvegicus Norway rat  Rnor\Naf1   Homo sapiens Human  Hsap\NAF1
Human Orthologs (1)
Gene OMIM HGNC Hsap\NAF1
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD24151 Drosophila sechellia Dsec\GM17288 Drosophila erecta Dere\GG21127 Drosophila yakuba Dyak\GE13201 Drosophila ananassae Dana\GF15068 Drosophila pseudoobscura pseudoobscura Dpse\GA10257 Drosophila persimilis Dper\GL19631 Drosophila willistoni Dwil\GK24689 Drosophila virilis Dvir\GJ17682 Drosophila mojavensis Dmoj\GI17911 Drosophila grimshawi Dgri\GH11607
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	41653 y1 v1; P{TRiP.GL01235}attP2 19105 w1118; PBac{WH}CG10341f07749/CyO
Harvard	- PBac{WH}CG10341f07749
Kyoto	114554 yd2 w1118 P{ey-FLP.N}2; PBac{WH}CG10341f07749 P{neoFRT}40A/CyO y+
VDRC	v52091 w1118; P{GD6948}v52091 v52092 w1118; P{GD6948}v52092
Genomic Clones ( 1 )
	BACR25C02 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 32 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH23387
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GM31454 GM32355 LD18749 RE62677 SD19892 SD22819
Other clones	100934 118938 125154 161162 EK223416 GM02707 GM03460 GM08758 RM06727 RM06827 RM06927 RM07127 RM07227 RM07327 RP001003684 RP001003720 RP001012651 RP001015246 RP001018362 RP001028724 RP001028980 RP001037665 RP001046612 RP001051058 RP001052144
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0032701 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35125
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_136054 RefSeq (Proteins) • NP_609898 DDBJ / EMBL / GenBank • AAF53693 AAK93013 ABV53693 AI403857 AW940902 AY051589 CZ490489 Entrez Gene - A searchable database of RefSeq genes. • 35125 UniProtKB/Swiss-Prot • Q9VJ62 UniProtKB/TrEMBL • A8DZ16
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 (IPR007504) Translation elongation/initiation factor/Ribosomal, beta-barrel (IPR009000) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GH23387
Linkouts
	BioGRID - A database of protein and genetic interactions • 61119 DroID - A comprehensive database of gene and protein interactions. • FBgn0032701 DRSC - Results from RNAi screens. • FBgn0032701 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032701 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG10341-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0032701 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35125 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 35125 modMine - Data generated by the modENCODE project. • FBgn0032701
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG10341 (Furrer et al., 2010, Quinones-Coello, 2007, Keleman et al., 2009.8.5, Japanese National Institute of Genetics, 2012.5.21, Ni et al., 2010.12.1)
Name Synonym
Secondary FlyBase IDs
References ( 20 )
Research paper	Bras et al., 2012, J. Cell Sci. 125(20): 4886--4901 Genetic identification of intracellular trafficking regulators involved in Notch-dependent binary cell fate acquisition following asymmetric cell division. [FBrf0220239] Crawford et al., 2012, Cell Death Differ. 19(12): 2040--2048 Conservation of caspase substrates across metazoans suggests hierarchical importance of signaling pathways over specific targets and cleavage site motifs in apoptosis. [FBrf0220233] Furrer et al., 2010, J. Biol. Chem. 285(51): 39623--39636 Drosophila Myc Interacts with Host Cell Factor (dHCF) to Activate Transcription and Control Growth. [FBrf0212501]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] Neumüller et al., 2011, Cell Stem Cell 8(5): Supplemental Table S1. [FBrf0214431] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Quinones-Coello, 2007, Genetics 175(3): Supplemental Table 1. List of genes associated with protein or enhancer traps. [FBrf0200393] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Ni et al., 2010.12.1, A genome-scale shRNA resource for transgenic RNAi in Drosophila. A genome-scale shRNA resource for transgenic RNAi in Drosophila. [FBrf0212437] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file) Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]