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Gene Dmel\fon

General Information
Symbol	Dmel\fon	Species	D. melanogaster
Name	fondue	Annotation symbol	CG15825
Feature type	protein_coding_gene	FlyBase ID	FBgn0032773
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	37D3-37D3	Sequence location	2L:19,383,138..19,386,205 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene fondue is referred to in FlyBase by the symbol Dmel\fon (CG15825, FBgn0032773). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: hemolymph coagulation; metamorphosis. 7 alleles are reported. The phenotypes of these alleles are annotated with: larva; hemolymph; pupa; pupal spiracle; pupal cuticle. It has 4 annotated transcripts and 4 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval hindgut, adult heart, larval/adult fat body, larval salivary gland, adult spermathecae, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult central nervous system, adult crop, adult hindgut, larval trachea, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1626473_a_at partially aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of fon: 12 out of 13 probes fall into this exonic region. Gene sequence location is 2L:19383138..19386205.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 37D3-37D3   Limits computationally determined from genome sequence between P{EP}dntEP2158 and P{EP}EP623&P{PZ}spi01068
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\fon for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.43 Gene model reviewed during 5.48
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) fon-RA FBtr0081223  NM_165287   1991   565 fon-RB FBtr0081222  NM_136115   2276   577 fon-RC FBtr0301287  NM_001169542   1925   577 fon-RD FBtr0336819  NM_001273641   1916   574
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein fon-PA   FBpp0080764   56.6   565   6.43     NP_724177   AAN11032 fon-PB   FBpp0080763   58.0   577   6.96     NP_609959   AAF53787 fon-PC   FBpp0290502   58.0   577   6.96     NP_001163013   ACZ94299 fon-PD   FBpp0307786   57.6   574   6.92     NP_001260570   AGB93105
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA567329   AA697848   AA698309   AE014134 AAF53787   AE014134 AAN11032   AE014134 ACZ94299   AE014134 AGB93105   AI062673   AI064621   AI107791   AI110056   AI110106   AI114308   AI134857   AI238332   AI257655   AI258752   AI260792   AI293696   AI294684   AI295147   AI296031   AI297028   AI297108   AI297575   AI388104   AI388331   AI402655   AI404279   AI406186   AI944558   AW941404   AY118481 AAM49850   BF485922   BF495323   BI162439   BI162440   BI166874   BI168093   BI169534   BI170088   BI173078   BI213352   BI213650   BI215167   BI215958   BI216545   BI229095   BI229127   BI235059   BI235636   BI235834   BI242150   BI242202   BI242851   BI242852   BI243492   BI356117   BI356190   BI357286   BI357431   BI358069   BI358078   BI365284   BI366747   BI368696   BI370738   BI373332   BI373636   BI373740   BI374015   BI375868   BI483475   BI484246   BI484437   BI568083   BI569023   BI569024   BI569065   BI569066   BI569303   BI569304   BI572656   BI574998   BI577069   BI577507   BI577894   BI578767   BI584233   BI584547   BI586656   BI587365   BI589578   BI589659   BI590258   BI591488   BI609574   BI609867   BI624656   BP541186   BP541187   BP542062   BP543098   BP543099   BP549872   BP555771   BP555772   BQ102662   BQ103327   BQ103369   BT126404   CA803267   CA803429   CA803507   CA804324   CA804394   CA804470   CA805707   CA805997   CA806107   CA806581   CA806802   CA806956   CA806971   CA807479   CA807481   CK657151   CK657423   CK658000   CK659123   CK659751   CK659945   CK660596   CK660986   CK661005   CK661717   CK662456   CO181099   CO182568   CO183024   CO193724   CO195080   CO196417   CO266722   CO273884   CO274096   CO276079   CO292859   CO316751   CO333185   CO340024   CO342503   CO342594   EC073006   EC075143   EC086834   EC089467   EC200332   EC208914   EC227080   EC228286   EC231857   EC233585   EC252318   EC253596   EL872529   EL875062   ES688767   EV589956   FD586327   FD586413   FD586997   GH739287   GH761941   GH764970   GH769208
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8INW9 Q9VIX7
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 13 -- 16   embryonic/larval fat body   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
extracellular region inferred from direct assay (Karlsson et al., 2004) lipid particle inferred from direct assay (Beller et al., 2006)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval hindgut, adult heart, larval/adult fat body, larval salivary gland, adult spermathecae, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult central nervous system, adult crop, adult hindgut, larval trachea, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    12.425 Larval Midgut    23.2 Larval Hindgut    853.7 Larval Malpighian Tubules    81.2 Larval Fat Body    9446 Larval Salivary Gland    611.9 Larval Trachea    340.775 Larval Carcass    303.575 Adult Head    1684.8 Adult Eye    1094.175 Adult Brain    124.5 Adult Thoracic-Abdominal Ganglion    116.7 Adult Crop    105.1 Adult Midgut    11.9 Adult Hindgut    225.2 Adult Malpighian Tubules    128.1 Adult Fat Body    4042 Adult Salivary Gland    40.9 Adult Heart    3043.2 Adult VirginFemale Spermatheca    4718.1 Adult InseminatedFemale Spermatheca    4866.3 Adult Ovary    3.3 Adult Testis    84.4 Adult Male Accessory Gland    10.1 Adult Carcass    2264.2 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    12.425 Larval Midgut    23.2 Larval Hindgut  (853.7) Larval Malpighian Tubules    81.2 Larval Fat Body  (9446) Larval Salivary Gland  (611.9) Larval Trachea    340.775 Larval Carcass    303.575 Adult Head  (1684.8) Adult Eye  (1094.175) Adult Brain    124.5 Adult Thoracic-Abdominal Ganglion    116.7 Adult Crop    105.1 Adult Midgut    11.9 Adult Hindgut    225.2 Adult Malpighian Tubules    128.1 Adult Fat Body  (4042) Adult Salivary Gland    40.9 Adult Heart  (3043.2) Adult VirginFemale Spermatheca  (4718.1) Adult InseminatedFemale Spermatheca  (4866.3) Adult Ovary    3.3 Adult Testis    84.4 Adult Male Accessory Gland    10.1 Adult Carcass  (2264.2) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    12.425 Larval Midgut    23.2 Larval Hindgut    853.7 Larval Malpighian Tubules    81.2 Larval Fat Body  (9446) Larval Salivary Gland    611.9 Larval Trachea    340.775 Larval Carcass    303.575 Adult Head  (1684.8) Adult Eye  (1094.175) Adult Brain    124.5 Adult Thoracic-Abdominal Ganglion    116.7 Adult Crop    105.1 Adult Midgut    11.9 Adult Hindgut    225.2 Adult Malpighian Tubules    128.1 Adult Fat Body  (4042) Adult Salivary Gland    40.9 Adult Heart  (3043.2) Adult VirginFemale Spermatheca  (4718.1) Adult InseminatedFemale Spermatheca  (4866.3) Adult Ovary    3.3 Adult Testis    84.4 Adult Male Accessory Gland    10.1 Adult Carcass  (2264.2) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    12.425 Larval Midgut    23.2 Larval Hindgut    853.7 Larval Malpighian Tubules    81.2 Larval Fat Body    9446 Larval Salivary Gland    611.9 Larval Trachea    340.775 Larval Carcass    303.575 Adult Head    1684.8 Adult Eye    1094.175 Adult Brain    124.5 Adult Thoracic-Abdominal Ganglion    116.7 Adult Crop    105.1 Adult Midgut    11.9 Adult Hindgut    225.2 Adult Malpighian Tubules    128.1 Adult Fat Body    4042 Adult Salivary Gland    40.9 Adult Heart    3043.2 Adult VirginFemale Spermatheca    4718.1 Adult InseminatedFemale Spermatheca    4866.3 Adult Ovary    3.3 Adult Testis    84.4 Adult Male Accessory Gland    10.1 Adult Carcass    2264.2 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    12.425 Larval Midgut    23.2 Larval Hindgut    853.7 Larval Malpighian Tubules    81.2 Larval Fat Body    9446 Larval Salivary Gland    611.9 Larval Trachea    340.775 Larval Carcass    303.575 Adult Head    1684.8 Adult Eye    1094.175 Adult Brain    124.5 Adult Thoracic-Abdominal Ganglion    116.7 Adult Crop    105.1 Adult Midgut    11.9 Adult Hindgut    225.2 Adult Malpighian Tubules    128.1 Adult Fat Body    4042 Adult Salivary Gland    40.9 Adult Heart    3043.2 Adult VirginFemale Spermatheca    4718.1 Adult InseminatedFemale Spermatheca    4866.3 Adult Ovary    3.3 Adult Testis    84.4 Adult Male Accessory Gland    10.1 Adult Carcass    2264.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    12.425 Larval Midgut    23.2 Larval Hindgut  (853.7) Larval Malpighian Tubules    81.2 Larval Fat Body  (9446) Larval Salivary Gland  611.9 Larval Trachea    340.775 Larval Carcass    303.575 Adult Head  (1684.8) Adult Eye  (1094.175) Adult Brain    124.5 Adult Thoracic-Abdominal Ganglion    116.7 Adult Crop    105.1 Adult Midgut    11.9 Adult Hindgut    225.2 Adult Malpighian Tubules    128.1 Adult Fat Body  (4042) Adult Salivary Gland    40.9 Adult Heart  (3043.2) Adult VirginFemale Spermatheca  (4718.1) Adult InseminatedFemale Spermatheca  (4866.3) Adult Ovary    3.3 Adult Testis    84.4 Adult Male Accessory Gland    10.1 Adult Carcass  (2264.2) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    12.425 Larval Midgut    23.2 Larval Hindgut    853.7 Larval Malpighian Tubules    81.2 Larval Fat Body  (9446) Larval Salivary Gland    611.9 Larval Trachea    340.775 Larval Carcass    303.575 Adult Head  1684.8 Adult Eye  1094.175 Adult Brain    124.5 Adult Thoracic-Abdominal Ganglion    116.7 Adult Crop    105.1 Adult Midgut    11.9 Adult Hindgut    225.2 Adult Malpighian Tubules    128.1 Adult Fat Body  (4042) Adult Salivary Gland    40.9 Adult Heart  (3043.2) Adult VirginFemale Spermatheca  (4718.1) Adult InseminatedFemale Spermatheca  (4866.3) Adult Ovary    3.3 Adult Testis    84.4 Adult Male Accessory Gland    10.1 Adult Carcass  (2264.2) Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    12.425 Larval Midgut    23.2 Larval Hindgut    853.7 Larval Malpighian Tubules    81.2 Larval Fat Body    9446 Larval Salivary Gland    611.9 Larval Trachea    340.775 Larval Carcass    303.575 Adult Head    1684.8 Adult Eye    1094.175 Adult Brain    124.5 Adult Thoracic-Abdominal Ganglion    116.7 Adult Crop    105.1 Adult Midgut    11.9 Adult Hindgut    225.2 Adult Malpighian Tubules    128.1 Adult Fat Body    4042 Adult Salivary Gland    40.9 Adult Heart    3043.2 Adult VirginFemale Spermatheca    4718.1 Adult InseminatedFemale Spermatheca    4866.3 Adult Ovary    3.3 Adult Testis    84.4 Adult Male Accessory Gland    10.1 Adult Carcass    2264.2 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    1684.8   NA  Eye    1094.175   NA  Brain    124.5   no informative data  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    116.7   NA  Crop    105.1   23.2  Midgut    no informative data   853.7  Hindgut    225.2   81.2  Malpighian Tubules    no informative data   9446  Fat Body    4042   611.9  Salivary Gland    no informative data   NA  Heart    3043.2   340.775  Trachea    NA   NA  VirginFemale Spermatheca    4718.1   NA  InseminatedFemale Spermatheca    4866.3   NA  Ovary    3.3   NA  Testis    84.4   NA  Male Accessory Gland    no informative data   303.575  Carcass    2264.2 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female    152 head, virgin 4-day female    161 head, virgin 20-day female    457 head, mated 1-day female    122 head, mated 4-day female    202 head, mated 20-day female    405 head, mated 1-day male    126 head, mated 4-day male    106 head, mated 20-day male    216 salivary gland, larvae L3 wandering    18 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    24 digestive system, 1-day adult    22 digestive system, 4-day adult    12 digestive system, 20-day adult    15 fat body, larvae L3 wandering    2214 fat body, white prepupae    53 fat body, pupae P8    844 carcass, larvae L3 wandering    29 carcass, 1-day adult    202 carcass, 4-day adult    163 carcass, 20-day adult    379 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female  (152) head, virgin 4-day female  (161) head, virgin 20-day female  (457) head, mated 1-day female  (122) head, mated 4-day female  (202) head, mated 20-day female  (405) head, mated 1-day male  (126) head, mated 4-day male  (106) head, mated 20-day male  (216) salivary gland, larvae L3 wandering    18 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    24 digestive system, 1-day adult    22 digestive system, 4-day adult    12 digestive system, 20-day adult    15 fat body, larvae L3 wandering  (2214) fat body, white prepupae  (53) fat body, pupae P8  (844) carcass, larvae L3 wandering  (29) carcass, 1-day adult  (202) carcass, 4-day adult  (163) carcass, 20-day adult  (379) ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female  (152) head, virgin 4-day female  (161) head, virgin 20-day female  (457) head, mated 1-day female  (122) head, mated 4-day female  (202) head, mated 20-day female  (405) head, mated 1-day male  (126) head, mated 4-day male  106 head, mated 20-day male  (216) salivary gland, larvae L3 wandering    18 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    24 digestive system, 1-day adult    22 digestive system, 4-day adult    12 digestive system, 20-day adult    15 fat body, larvae L3 wandering  (2214) fat body, white prepupae    53 fat body, pupae P8  (844) carcass, larvae L3 wandering    29 carcass, 1-day adult  (202) carcass, 4-day adult  (163) carcass, 20-day adult  (379) ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female    152 head, virgin 4-day female    161 head, virgin 20-day female    457 head, mated 1-day female    122 head, mated 4-day female    202 head, mated 20-day female    405 head, mated 1-day male    126 head, mated 4-day male    106 head, mated 20-day male    216 salivary gland, larvae L3 wandering    18 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    24 digestive system, 1-day adult    22 digestive system, 4-day adult    12 digestive system, 20-day adult    15 fat body, larvae L3 wandering    2214 fat body, white prepupae    53 fat body, pupae P8    844 carcass, larvae L3 wandering    29 carcass, 1-day adult    202 carcass, 4-day adult    163 carcass, 20-day adult    379 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    16 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female    152 head, virgin 4-day female    161 head, virgin 20-day female    457 head, mated 1-day female    122 head, mated 4-day female    202 head, mated 20-day female    405 head, mated 1-day male    126 head, mated 4-day male    106 head, mated 20-day male    216 salivary gland, larvae L3 wandering    18 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    24 digestive system, 1-day adult    22 digestive system, 4-day adult    12 digestive system, 20-day adult    15 fat body, larvae L3 wandering    2214 fat body, white prepupae    53 fat body, pupae P8    844 carcass, larvae L3 wandering    29 carcass, 1-day adult    202 carcass, 4-day adult    163 carcass, 20-day adult    379 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female  (152) head, virgin 4-day female  (161) head, virgin 20-day female  (457) head, mated 1-day female  (122) head, mated 4-day female  (202) head, mated 20-day female  (405) head, mated 1-day male  (126) head, mated 4-day male  (106) head, mated 20-day male  (216) salivary gland, larvae L3 wandering    18 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    24 digestive system, 1-day adult    22 digestive system, 4-day adult    12 digestive system, 20-day adult    15 fat body, larvae L3 wandering  (2214) fat body, white prepupae  (53) fat body, pupae P8  (844) carcass, larvae L3 wandering  29 carcass, 1-day adult  (202) carcass, 4-day adult  (163) carcass, 20-day adult  (379) ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female  (152) head, virgin 4-day female  (161) head, virgin 20-day female  (457) head, mated 1-day female  122 head, mated 4-day female  (202) head, mated 20-day female  (405) head, mated 1-day male  126 head, mated 4-day male  106 head, mated 20-day male  (216) salivary gland, larvae L3 wandering    18 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    24 digestive system, 1-day adult    22 digestive system, 4-day adult    12 digestive system, 20-day adult    15 fat body, larvae L3 wandering  (2214) fat body, white prepupae    53 fat body, pupae P8  (844) carcass, larvae L3 wandering    29 carcass, 1-day adult  (202) carcass, 4-day adult  (163) carcass, 20-day adult  (379) ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female    152 head, virgin 4-day female    161 head, virgin 20-day female    457 head, mated 1-day female    122 head, mated 4-day female    202 head, mated 20-day female    405 head, mated 1-day male    126 head, mated 4-day male    106 head, mated 20-day male    216 salivary gland, larvae L3 wandering    18 salivary gland, white prepupae    8 digestive system, larvae L3 wandering    24 digestive system, 1-day adult    22 digestive system, 4-day adult    12 digestive system, 20-day adult    15 fat body, larvae L3 wandering    2214 fat body, white prepupae    53 fat body, pupae P8    844 carcass, larvae L3 wandering    29 carcass, 1-day adult    202 carcass, 4-day adult    163 carcass, 20-day adult    379 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    6 accessory gland, mated 4-day male    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    13 embryo 16-18hr    76 embryo 18-20hr    295 embryo 20-22hr    550 embryo 22-24hr    445 larva L1    202 larva L2    280 larva L3 12hr old    924 larva L3 puffstage 1-2    739 larva L3 puffstage 3-6    472 larva L3 puffstage 7-9    118 white prepupae new    36 white prepupae 12hr    929 white prepupae 24hr    264 pupae 2d postWPP    290 pupae 3d postWPP    117 pupae 4d postWPP    524 adult male 01day    68 adult male 05day    40 adult male 30day    33 adult female 01day    57 adult female 05day    56 adult female 30day    68 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    13 embryo 16-18hr  (76) embryo 18-20hr  (295) embryo 20-22hr  (550) embryo 22-24hr  (445) larva L1  (202) larva L2  (280) larva L3 12hr old  (924) larva L3 puffstage 1-2  (739) larva L3 puffstage 3-6  (472) larva L3 puffstage 7-9  (118) white prepupae new  (36) white prepupae 12hr  (929) white prepupae 24hr  (264) pupae 2d postWPP  (290) pupae 3d postWPP  (117) pupae 4d postWPP  (524) adult male 01day  (68) adult male 05day  (40) adult male 30day  (33) adult female 01day  (57) adult female 05day  (56) adult female 30day  (68) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    13 embryo 16-18hr    76 embryo 18-20hr  (295) embryo 20-22hr  (550) embryo 22-24hr  (445) larva L1  (202) larva L2  (280) larva L3 12hr old  (924) larva L3 puffstage 1-2  (739) larva L3 puffstage 3-6  (472) larva L3 puffstage 7-9  (118) white prepupae new    36 white prepupae 12hr  (929) white prepupae 24hr  (264) pupae 2d postWPP  (290) pupae 3d postWPP  (117) pupae 4d postWPP  (524) adult male 01day    68 adult male 05day    40 adult male 30day    33 adult female 01day    57 adult female 05day    56 adult female 30day    68 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    13 embryo 16-18hr    76 embryo 18-20hr    295 embryo 20-22hr    550 embryo 22-24hr    445 larva L1    202 larva L2    280 larva L3 12hr old    924 larva L3 puffstage 1-2    739 larva L3 puffstage 3-6    472 larva L3 puffstage 7-9    118 white prepupae new    36 white prepupae 12hr    929 white prepupae 24hr    264 pupae 2d postWPP    290 pupae 3d postWPP    117 pupae 4d postWPP    524 adult male 01day    68 adult male 05day    40 adult male 30day    33 adult female 01day    57 adult female 05day    56 adult female 30day    68 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    13 embryo 16-18hr    76 embryo 18-20hr    295 embryo 20-22hr    550 embryo 22-24hr    445 larva L1    202 larva L2    280 larva L3 12hr old    924 larva L3 puffstage 1-2    739 larva L3 puffstage 3-6    472 larva L3 puffstage 7-9    118 white prepupae new    36 white prepupae 12hr    929 white prepupae 24hr    264 pupae 2d postWPP    290 pupae 3d postWPP    117 pupae 4d postWPP    524 adult male 01day    68 adult male 05day    40 adult male 30day    33 adult female 01day    57 adult female 05day    56 adult female 30day    68 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    13 embryo 16-18hr  (76) embryo 18-20hr  (295) embryo 20-22hr  (550) embryo 22-24hr  (445) larva L1  (202) larva L2  (280) larva L3 12hr old  (924) larva L3 puffstage 1-2  (739) larva L3 puffstage 3-6  (472) larva L3 puffstage 7-9  (118) white prepupae new  (36) white prepupae 12hr  (929) white prepupae 24hr  (264) pupae 2d postWPP  (290) pupae 3d postWPP  (117) pupae 4d postWPP  (524) adult male 01day  (68) adult male 05day  (40) adult male 30day  (33) adult female 01day  (57) adult female 05day  (56) adult female 30day  (68) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    13 embryo 16-18hr    76 embryo 18-20hr  (295) embryo 20-22hr  (550) embryo 22-24hr  (445) larva L1  (202) larva L2  (280) larva L3 12hr old  (924) larva L3 puffstage 1-2  (739) larva L3 puffstage 3-6  (472) larva L3 puffstage 7-9  118 white prepupae new    36 white prepupae 12hr  (929) white prepupae 24hr  (264) pupae 2d postWPP  (290) pupae 3d postWPP  117 pupae 4d postWPP  (524) adult male 01day    68 adult male 05day    40 adult male 30day    33 adult female 01day    57 adult female 05day    56 adult female 30day    68 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    13 embryo 16-18hr    76 embryo 18-20hr    295 embryo 20-22hr    550 embryo 22-24hr    445 larva L1    202 larva L2    280 larva L3 12hr old    924 larva L3 puffstage 1-2    739 larva L3 puffstage 3-6    472 larva L3 puffstage 7-9    118 white prepupae new    36 white prepupae 12hr    929 white prepupae 24hr    264 pupae 2d postWPP    290 pupae 3d postWPP    117 pupae 4d postWPP    524 adult male 01day    68 adult male 05day    40 adult male 30day    33 adult female 01day    57 adult female 05day    56 adult female 30day    68 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    21 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    21 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    21 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    21 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    21 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    21 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    21 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    21 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    22 heat shock, 4-day adult    436 Cadmium 50 mM 6 hrs, larvae L3    1051 Cadmium 50 mM 12 hrs, larvae L3    400 Cadmium 50 mM 48 hrs, 4-day adult    515 Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3    530 Copper 15 mM 48 hrs, 4-day adult    30 Zinc 5 mM 12 hrs, larvae L3    433 Zinc 4.5 mM 48 hrs, 4-day adult    62 Ethanol 2.5% 3 hrs, larvae L3    48 Ethanol 5% 3 hrs, larvae L3    796 Ethanol 10% 3 hrs, larvae L3    947 Caffeine 1.5 mg/ml 4 hrs, larvae L3    684 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    46 Caffeine 25 mg/ml 48 hrs, 4-day adult    54 Paraquat 5 mM 48 hrs, 4-day adult    53 Paraquat 10 mM 48 hrs, 4-day adult    65 Rotenone 2 μg 12 hrs, larvae L3    828 Rotenone 8 μg 12 hrs, larvae L3    1190 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    22 heat shock, 4-day adult  (436) Cadmium 50 mM 6 hrs, larvae L3  (1051) Cadmium 50 mM 12 hrs, larvae L3  (400) Cadmium 50 mM 48 hrs, 4-day adult  (515) Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3  (530) Copper 15 mM 48 hrs, 4-day adult  (30) Zinc 5 mM 12 hrs, larvae L3  (433) Zinc 4.5 mM 48 hrs, 4-day adult  (62) Ethanol 2.5% 3 hrs, larvae L3  (48) Ethanol 5% 3 hrs, larvae L3  (796) Ethanol 10% 3 hrs, larvae L3  (947) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (684) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (46) Caffeine 25 mg/ml 48 hrs, 4-day adult  (54) Paraquat 5 mM 48 hrs, 4-day adult  (53) Paraquat 10 mM 48 hrs, 4-day adult  (65) Rotenone 2 μg 12 hrs, larvae L3  (828) Rotenone 8 μg 12 hrs, larvae L3  (1190) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    22 heat shock, 4-day adult  (436) Cadmium 50 mM 6 hrs, larvae L3  (1051) Cadmium 50 mM 12 hrs, larvae L3  (400) Cadmium 50 mM 48 hrs, 4-day adult  (515) Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3  (530) Copper 15 mM 48 hrs, 4-day adult    30 Zinc 5 mM 12 hrs, larvae L3  (433) Zinc 4.5 mM 48 hrs, 4-day adult    62 Ethanol 2.5% 3 hrs, larvae L3    48 Ethanol 5% 3 hrs, larvae L3  (796) Ethanol 10% 3 hrs, larvae L3  (947) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (684) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    46 Caffeine 25 mg/ml 48 hrs, 4-day adult    54 Paraquat 5 mM 48 hrs, 4-day adult    53 Paraquat 10 mM 48 hrs, 4-day adult    65 Rotenone 2 μg 12 hrs, larvae L3  (828) Rotenone 8 μg 12 hrs, larvae L3  (1190) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    22 heat shock, 4-day adult    436 Cadmium 50 mM 6 hrs, larvae L3    1051 Cadmium 50 mM 12 hrs, larvae L3    400 Cadmium 50 mM 48 hrs, 4-day adult    515 Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3    530 Copper 15 mM 48 hrs, 4-day adult    30 Zinc 5 mM 12 hrs, larvae L3    433 Zinc 4.5 mM 48 hrs, 4-day adult    62 Ethanol 2.5% 3 hrs, larvae L3    48 Ethanol 5% 3 hrs, larvae L3    796 Ethanol 10% 3 hrs, larvae L3    947 Caffeine 1.5 mg/ml 4 hrs, larvae L3    684 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    46 Caffeine 25 mg/ml 48 hrs, 4-day adult    54 Paraquat 5 mM 48 hrs, 4-day adult    53 Paraquat 10 mM 48 hrs, 4-day adult    65 Rotenone 2 μg 12 hrs, larvae L3    828 Rotenone 8 μg 12 hrs, larvae L3    1190 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    22 heat shock, 4-day adult    436 Cadmium 50 mM 6 hrs, larvae L3    1051 Cadmium 50 mM 12 hrs, larvae L3    400 Cadmium 50 mM 48 hrs, 4-day adult    515 Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3    530 Copper 15 mM 48 hrs, 4-day adult    30 Zinc 5 mM 12 hrs, larvae L3    433 Zinc 4.5 mM 48 hrs, 4-day adult    62 Ethanol 2.5% 3 hrs, larvae L3    48 Ethanol 5% 3 hrs, larvae L3    796 Ethanol 10% 3 hrs, larvae L3    947 Caffeine 1.5 mg/ml 4 hrs, larvae L3    684 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    46 Caffeine 25 mg/ml 48 hrs, 4-day adult    54 Paraquat 5 mM 48 hrs, 4-day adult    53 Paraquat 10 mM 48 hrs, 4-day adult    65 Rotenone 2 μg 12 hrs, larvae L3    828 Rotenone 8 μg 12 hrs, larvae L3    1190 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    22 heat shock, 4-day adult  (436) Cadmium 50 mM 6 hrs, larvae L3  (1051) Cadmium 50 mM 12 hrs, larvae L3  (400) Cadmium 50 mM 48 hrs, 4-day adult  (515) Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3  (530) Copper 15 mM 48 hrs, 4-day adult  30 Zinc 5 mM 12 hrs, larvae L3  (433) Zinc 4.5 mM 48 hrs, 4-day adult  (62) Ethanol 2.5% 3 hrs, larvae L3  (48) Ethanol 5% 3 hrs, larvae L3  (796) Ethanol 10% 3 hrs, larvae L3  (947) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (684) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (46) Caffeine 25 mg/ml 48 hrs, 4-day adult  (54) Paraquat 5 mM 48 hrs, 4-day adult  (53) Paraquat 10 mM 48 hrs, 4-day adult  (65) Rotenone 2 μg 12 hrs, larvae L3  (828) Rotenone 8 μg 12 hrs, larvae L3  (1190) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    22 heat shock, 4-day adult  (436) Cadmium 50 mM 6 hrs, larvae L3  (1051) Cadmium 50 mM 12 hrs, larvae L3  (400) Cadmium 50 mM 48 hrs, 4-day adult  (515) Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3  (530) Copper 15 mM 48 hrs, 4-day adult    30 Zinc 5 mM 12 hrs, larvae L3  (433) Zinc 4.5 mM 48 hrs, 4-day adult    62 Ethanol 2.5% 3 hrs, larvae L3    48 Ethanol 5% 3 hrs, larvae L3  (796) Ethanol 10% 3 hrs, larvae L3  (947) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (684) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    46 Caffeine 25 mg/ml 48 hrs, 4-day adult    54 Paraquat 5 mM 48 hrs, 4-day adult    53 Paraquat 10 mM 48 hrs, 4-day adult    65 Rotenone 2 μg 12 hrs, larvae L3  (828) Rotenone 8 μg 12 hrs, larvae L3  (1190) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    23 cold shock, 4-day adult    22 heat shock, 4-day adult    436 Cadmium 50 mM 6 hrs, larvae L3    1051 Cadmium 50 mM 12 hrs, larvae L3    400 Cadmium 50 mM 48 hrs, 4-day adult    515 Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3    530 Copper 15 mM 48 hrs, 4-day adult    30 Zinc 5 mM 12 hrs, larvae L3    433 Zinc 4.5 mM 48 hrs, 4-day adult    62 Ethanol 2.5% 3 hrs, larvae L3    48 Ethanol 5% 3 hrs, larvae L3    796 Ethanol 10% 3 hrs, larvae L3    947 Caffeine 1.5 mg/ml 4 hrs, larvae L3    684 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    46 Caffeine 25 mg/ml 48 hrs, 4-day adult    54 Paraquat 5 mM 48 hrs, 4-day adult    53 Paraquat 10 mM 48 hrs, 4-day adult    65 Rotenone 2 μg 12 hrs, larvae L3    828 Rotenone 8 μg 12 hrs, larvae L3    1190 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_18 mE1_20_mRNA_expression_cluster_15
External Data & Images
Linkouts	BDGP expression data • HL01053 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032773 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG15825-RB FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for fon Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | pupal stage (with Df(2L)Exel6043) fonMB11923 lethal | pupal stage | recessive fonMB11923 fonΔ17A fonΔ24A partially lethal - majority die | pupal stage, with Scer\GAL4da.G32 fondsRNA.IR.Scer\UAS partially lethal - majority die | pupal stage, with Scer\GAL4ppl.PP fondsRNA.IR.Scer\UAS viable, with Scer\GAL4Act5C.PU fonScer\UAS.T:Avic\GFP-EGFP viable, with Scer\GAL4da.G32 fondsRNA.IR.Scer\UAS fonScer\UAS.T:Avic\GFP-EGFP viable, with Scer\GAL4He.PZ fonScer\UAS.T:Avic\GFP-EGFP viable, with Scer\GAL4Hml.PG fonScer\UAS.T:Avic\GFP-EGFP Other Phenotypes Allele immune response defective, with Scer\GAL4da.G32 fondsRNA.IR.Scer\UAS wound healing defective, with Scer\GAL4da.G32 fondsRNA.IR.Scer\UAS Phenotype manifest in Allele hemolymph, with Scer\GAL4da.G32 fondsRNA.IR.Scer\UAS larva, with Scer\GAL4da.G32 fondsRNA.IR.Scer\UAS larva, with Scer\GAL4ppl.PP fondsRNA.IR.Scer\UAS pupa, with Scer\GAL4da.G32 fondsRNA.IR.Scer\UAS pupal cuticle, with Scer\GAL4ppl.PP fondsRNA.IR.Scer\UAS pupal spiracle, with Scer\GAL4da.G32 fondsRNA.IR.Scer\UAS pupal spiracle, with Scer\GAL4ppl.PP fondsRNA.IR.Scer\UAS
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of fon Class Mutagen Stocks Known lesion fonΔ24A amorphic allele - genetic evidence minos transposase 1 Yes fonMB11923 hypomorphic allele - genetic evidence 1 Yes fonΔ17A minos transposase 1 Yes
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of fon Class Mutagen Stocks Known lesion fonScer\UAS.T:Avic\GFP-EGFP in vitro construct - regulatory fusion in vitro construct - coding region fusion 2 Yes fondsRNA.IR.Scer\UAS in vitro construct - regulatory fusion in vitro construct - RNAi 0 Yes fonGD5330 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes fonNIG.cUa in vitro construct - RNAi 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel6043 (Ryder, 2004.4.26) Df(2L)Exel7075 (Ryder, 2004.4.26) Df(2L)fonΔ27A (Bajzek et al., 2012)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD5330} NA P{UAS-fon.GFP} NA P{UAS-fon.IR} NA characterization construct P{NIG.fon.U} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap binary system Mi{ET1}fonMB11923 No
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 4 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
hemolymph coagulation inferred from direct assay (Scherfer et al., 2006) inferred from expression pattern (Karlsson et al., 2004) inferred from mutant phenotype (Scherfer et al., 2006, Lindgren et al., 2008) metamorphosis inferred from mutant phenotype (Scherfer et al., 2006)
Cellular Component
CV term Evidence References
extracellular region inferred from direct assay (Karlsson et al., 2004) lipid particle inferred from direct assay (Beller et al., 2006)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions fon allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0032773
Orthologs
OrthoDB Orthologs (13) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6V703H Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6V703H)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\fon     Drosophila simulans   Dsim\GD21766 Y   Drosophila sechellia   Dsec\GM17016 Y   Drosophila erecta   Dere\GG21638 Y   Drosophila yakuba   Dyak\GE12657 Y   Drosophila ananassae   Dana\GF15199 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA13975 Y   Drosophila persimilis   Dper\GL21112 Y   Drosophila willistoni   Dwil\GK23841 Y   Drosophila virilis   Dvir\GJ17981 Y   Drosophila mojavensis   Dmoj\GI17224 Y   Drosophila grimshawi   Dgri\GH17550     Drosophila grimshawi   Dgri\GH13472 Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD21766 Drosophila sechellia Dsec\GM17016 Drosophila erecta Dere\GG21638 Drosophila yakuba Dyak\GE12657 Drosophila ananassae Dana\GF15199 Drosophila pseudoobscura pseudoobscura Dpse\GA13975 Drosophila persimilis Dper\GL21112 Drosophila willistoni Dwil\GK23841 Drosophila virilis Dvir\GJ17981 Drosophila mojavensis Dmoj\GI17224 Drosophila grimshawi Dgri\GH13472
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	43645 w1118; P{UAS-fon.GFP}9 43646 w1118; P{UAS-fon.GFP}28e 29262 w1118; Mi{ET1}fonMB11923/SM6a 43643 w1118; fonΔ17A/CyO, P{ActGFP}JMR1 43644 w1118; fonΔ24A/CyO, P{ActGFP}JMR1
Genomic Clones ( 1 )
	BACR28G24 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 161 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	HL01053 RE04035
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT04310 GH19189 HL04251 LP04770 LP14474 LP18093 LP19290 LP20015 RE01757 RE07114 RE08637 RE10741 RE11439 RE15809 RE18736 RE19094 RE22739 RE26806 RE26843 RE30857 RE31538 RE39476 RE40303 RE40304 RE41149 RE42177 RE43716 RE43920 RE44739 RE44749 RE52348 RE54708 RE57469 RE60592 RE61133 RE61516 RE66377 RE67319 RE71196 RE71658 RE72683 RH01244 RH01270 RH01416
Other clones	35096 36507 59402 72485 75537 162373 164986 214307.21 214571.27 281108 AT20012 bs03h05 CK01.130D.A4 CK01.145C.H5 Dmel_neb_015271_0343_1020 EC13539 EC22981 EC24434 EC36685 EC39677 EK004211 EK112529 EK113139 EK119631 EK147338 EK201110 EK265762 EK306137 EP09909 EP15027 EP15159 ESG011a.E21_A06 ESG011b.E7_E02 ESG011b.E21_E02 ESG012a.E21_B07 ESG014a.E21_C09 ESG015a.E21_D02 ESG015d.B21.1_B12 ESG015d.E21.1_A02 ESG018a.E21_F12 ESG018a.E21_G03 ESG0113a.B21_F02 ESG0113b.B21.1_G09 ESG0113c.B21_H11 ESG0119b.B21_D11 ESG0120c.B21_E12 FGA011D03 FGC008F07 FGC018F05 FGM104A02 FGM237A10 GH01961 GH05085 GH05643 GH09504 GH09568 GH11115 GH12426 GH14358 GH18890 GH21914 GH23927 GH26407 HL03317 IP04437 IP15111 LP02023 LP06076 LP06888 LP08113 LP08694 LP09823 LP11181 LP11319 LP11906 LP16649 LP17725 LP20062 LP21383 LP22703 LP23228 LP23693 RE21505 RE23721 RE31776 RE39396 RE42278 RE50543 RE60978 RE63766 RE67540 RH03028 RH03130 RH03852 RH05269 RH08252 RH14374 RH14709 RH23255 RH23785 RH26736 RH27555 RH28024 RH33936 RH39440 RH64251 RM01312 RM01612 RM01712 RP001015418 RP001019163 RP001020937 RP001021085 UUGC0038 UUGC0730
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0032773 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35211
Antibody Information
Other Information
Discoverer
Etymology
	The gene is named 'Fondue' as a reference to the elongated clotting fiber phenotype. (Scherfer et al., 2006)
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: fon CG15825 (Scherfer et al., 2006)
Source for database merge of
Additional comments
Other Comments
	fon is mainly secreted into the hemolymph by the fat body. (Scherfer et al., 2006) fon does not play a major role in direct pathogen killing. (Scherfer et al., 2006) fon is an important protein required for clotting or clot hardening. (Scherfer et al., 2006)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_136115 NM_165287 NM_001169542 NM_001273641 RefSeq (Proteins) • NP_609959 NP_724177 NP_001163013 NP_001260570 DDBJ / EMBL / GenBank • AA567329 AA698309 AAF53787 AAM49850 AAN11032 ACZ94299 AGB93105 AI944558 AW941404 AY118481 Entrez Gene - A searchable database of RefSeq genes. • 35211 UniProtKB/TrEMBL • Q8INW9 Q9VIX7
Other Crossreferences
	BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • HL01053
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0032773 DRSC - Results from RNAi screens. • FBgn0032773 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032773 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG15825-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0032773 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35211 modMine - Data generated by the modENCODE project. • FBgn0032773
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	CG15825 (Edwards et al., 2006, Scherfer et al., 2006, Rehwinkel et al., 2006, Fujikawa et al., 2009, Cammarato et al., 2011, Chen et al., 2007) fon (Beller et al., 2006, Scherfer et al., 2006, Rynes et al., 2012, Lindgren et al., 2008, Fujikawa et al., 2009, Bajzek et al., 2012)
Name Synonym	CG15825 (Edwards et al., 2006, ) fondue (Scherfer et al., 2006, Cammarato et al., 2011, Bajzek et al., 2012) Fondue (Scherfer et al., 2006, Lesch et al., 2007, Lindgren et al., 2007, Lindgren et al., 2008) Gpdhdue (Felix et al., 2012)
Secondary FlyBase IDs
References ( 29 )
Generate a list of	All references relating to this gene ( 29 )
List References by type	Research paper  ( 13 ) Supplementary material  ( 5 ) Personal communication to FlyBase  ( 4 ) Abstract  ( 6 ) Website  ( 1 )
Recent research papers ( 3 )
	Bajzek et al., 2012, J. Insect Physiol. 58(10): 1376--1381 Coagulation and survival in Drosophila melanogaster fondue mutants. [FBrf0219386] Felix et al., 2012, Genetics 191(3): 989--1002 Age-Specific Variation in Immune Response in Drosophila melanogaster Has a Genetic Basis. [FBrf0218944] Rynes et al., 2012, Mol. Cell. Biol. 32(19): 3949--3962 Activating transcription factor 3 regulates immune and metabolic homeostasis. [FBrf0219385] Show all research papers ...