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Gene Dmel\CG16798

General Information
Symbol	Dmel\CG16798	Species	D. melanogaster
Name		Annotation symbol	CG16798
Feature type	protein_coding_gene	FlyBase ID	FBgn0032856
Gene Model Status	Current	Stock availability	3 publicly available
Also Known As	38C.41
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	38C5-38C5	Sequence location	2L:20,376,983..20,382,355 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG16798 (FBgn0032856). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Zona pellucida sperm-binding protein. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 12-18 embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1631692_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG16798. Gene sequence location is 2L:20376983..20382355.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN25619 HFA02517 BKN45602
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 38C5-38C5   Limits computationally determined from genome sequence between P{lacW}k09005 and P{EP}CG16798EP401&P{lacW}k07219
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG16798 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG16798-RA FBtr0081371  NM_136186   2509   561
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG16798-PA   FBpp0080903   60.8   561   6.20     NP_610030   AAF53889
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zona pellucida sperm-binding protein (IPR001507)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA949983   AA951825   AE014134 AAF53889   AC002503   AY122225 AAM52737   BI163289   BI166840   BI231614   BI232626   BI608575   CO283081   EC070666   EC073592   EC224914   EC240823
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VIM8
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0032856    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0032856 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 12-18 embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0032856 expression level Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    11 embryo 04-06hr    14 embryo 06-08hr    95 embryo 08-10hr    119 embryo 10-12hr    854 embryo 12-14hr    2124 embryo 14-16hr    4562 embryo 16-18hr    383 embryo 18-20hr    276 embryo 20-22hr    128 embryo 22-24hr    114 larva L1    119 larva L2    830 larva L3 12hr old    134 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    51 larva L3 puffstage 7-9    71 white prepupae new    122 white prepupae 12hr    372 white prepupae 24hr    2036 pupae 2d postWPP    2922 pupae 3d postWPP    277 pupae 4d postWPP    93 adult male 01day    63 adult male 05day    42 adult male 30day    30 adult female 01day    34 adult female 05day    14 adult female 30day    21 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    11 embryo 04-06hr    14 embryo 06-08hr    95 embryo 08-10hr  (119) embryo 10-12hr  (854) embryo 12-14hr  (2124) embryo 14-16hr  (4562) embryo 16-18hr  (383) embryo 18-20hr  (276) embryo 20-22hr  (128) embryo 22-24hr  (114) larva L1  (119) larva L2  (830) larva L3 12hr old  (134) larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    51 larva L3 puffstage 7-9    71 white prepupae new  (122) white prepupae 12hr  (372) white prepupae 24hr  (2036) pupae 2d postWPP  (2922) pupae 3d postWPP  (277) pupae 4d postWPP    93 adult male 01day    63 adult male 05day    42 adult male 30day    30 adult female 01day    34 adult female 05day    14 adult female 30day    21 Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    11 embryo 04-06hr    14 embryo 06-08hr    95 embryo 08-10hr    119 embryo 10-12hr    854 embryo 12-14hr  (2124) embryo 14-16hr  (4562) embryo 16-18hr    383 embryo 18-20hr    276 embryo 20-22hr    128 embryo 22-24hr    114 larva L1    119 larva L2    830 larva L3 12hr old    134 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    51 larva L3 puffstage 7-9    71 white prepupae new    122 white prepupae 12hr    372 white prepupae 24hr  (2036) pupae 2d postWPP  (2922) pupae 3d postWPP    277 pupae 4d postWPP    93 adult male 01day    63 adult male 05day    42 adult male 30day    30 adult female 01day    34 adult female 05day    14 adult female 30day    21 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    11 embryo 04-06hr    14 embryo 06-08hr    95 embryo 08-10hr    119 embryo 10-12hr    854 embryo 12-14hr    2124 embryo 14-16hr    4562 embryo 16-18hr    383 embryo 18-20hr    276 embryo 20-22hr    128 embryo 22-24hr    114 larva L1    119 larva L2    830 larva L3 12hr old    134 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    51 larva L3 puffstage 7-9    71 white prepupae new    122 white prepupae 12hr    372 white prepupae 24hr    2036 pupae 2d postWPP    2922 pupae 3d postWPP    277 pupae 4d postWPP    93 adult male 01day    63 adult male 05day    42 adult male 30day    30 adult female 01day    34 adult female 05day    14 adult female 30day    21 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    11 embryo 04-06hr    14 embryo 06-08hr    95 embryo 08-10hr    119 embryo 10-12hr    854 embryo 12-14hr    2124 embryo 14-16hr    4562 embryo 16-18hr    383 embryo 18-20hr    276 embryo 20-22hr    128 embryo 22-24hr    114 larva L1    119 larva L2    830 larva L3 12hr old    134 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    51 larva L3 puffstage 7-9    71 white prepupae new    122 white prepupae 12hr    372 white prepupae 24hr    2036 pupae 2d postWPP    2922 pupae 3d postWPP    277 pupae 4d postWPP    93 adult male 01day    63 adult male 05day    42 adult male 30day    30 adult female 01day    34 adult female 05day    14 adult female 30day    21 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0032856 expression level Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    11 embryo 04-06hr    14 embryo 06-08hr    95 embryo 08-10hr    119 embryo 10-12hr    854 embryo 12-14hr    2124 embryo 14-16hr    4562 embryo 16-18hr    383 embryo 18-20hr    276 embryo 20-22hr    128 embryo 22-24hr    114 larva L1    119 larva L2    830 larva L3 12hr old    134 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    51 larva L3 puffstage 7-9    71 white prepupae new    122 white prepupae 12hr    372 white prepupae 24hr    2036 pupae 2d postWPP    2922 pupae 3d postWPP    277 pupae 4d postWPP    93 adult male 01day    63 adult male 05day    42 adult male 30day    30 adult female 01day    34 adult female 05day    14 adult female 30day    21 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    11 embryo 04-06hr    14 embryo 06-08hr    95 embryo 08-10hr  119 embryo 10-12hr  (854) embryo 12-14hr  (2124) embryo 14-16hr  (4562) embryo 16-18hr  (383) embryo 18-20hr  (276) embryo 20-22hr  128 embryo 22-24hr  114 larva L1  119 larva L2  (830) larva L3 12hr old  134 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    51 larva L3 puffstage 7-9    71 white prepupae new  122 white prepupae 12hr  (372) white prepupae 24hr  (2036) pupae 2d postWPP  (2922) pupae 3d postWPP  (277) pupae 4d postWPP    93 adult male 01day    63 adult male 05day    42 adult male 30day    30 adult female 01day    34 adult female 05day    14 adult female 30day    21 Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    11 embryo 04-06hr    14 embryo 06-08hr    95 embryo 08-10hr    119 embryo 10-12hr    854 embryo 12-14hr  2124 embryo 14-16hr  (4562) embryo 16-18hr    383 embryo 18-20hr    276 embryo 20-22hr    128 embryo 22-24hr    114 larva L1    119 larva L2    830 larva L3 12hr old    134 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    51 larva L3 puffstage 7-9    71 white prepupae new    122 white prepupae 12hr    372 white prepupae 24hr  2036 pupae 2d postWPP  (2922) pupae 3d postWPP    277 pupae 4d postWPP    93 adult male 01day    63 adult male 05day    42 adult male 30day    30 adult female 01day    34 adult female 05day    14 adult female 30day    21 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    11 embryo 04-06hr    14 embryo 06-08hr    95 embryo 08-10hr    119 embryo 10-12hr    854 embryo 12-14hr    2124 embryo 14-16hr    4562 embryo 16-18hr    383 embryo 18-20hr    276 embryo 20-22hr    128 embryo 22-24hr    114 larva L1    119 larva L2    830 larva L3 12hr old    134 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    51 larva L3 puffstage 7-9    71 white prepupae new    122 white prepupae 12hr    372 white prepupae 24hr    2036 pupae 2d postWPP    2922 pupae 3d postWPP    277 pupae 4d postWPP    93 adult male 01day    63 adult male 05day    42 adult male 30day    30 adult female 01day    34 adult female 05day    14 adult female 30day    21 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    11 embryo 04-06hr    14 embryo 06-08hr    95 embryo 08-10hr    119 embryo 10-12hr    854 embryo 12-14hr    2124 embryo 14-16hr    4562 embryo 16-18hr    383 embryo 18-20hr    276 embryo 20-22hr    128 embryo 22-24hr    114 larva L1    119 larva L2    830 larva L3 12hr old    134 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    51 larva L3 puffstage 7-9    71 white prepupae new    122 white prepupae 12hr    372 white prepupae 24hr    2036 pupae 2d postWPP    2922 pupae 3d postWPP    277 pupae 4d postWPP    93 adult male 01day    63 adult male 05day    42 adult male 30day    30 adult female 01day    34 adult female 05day    14 adult female 30day    21 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0032856    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0032856 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0032856 expression level Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    9.8 Larval Hindgut    0.7 Larval Malpighian Tubules    2.4 Larval Fat Body    2.3 Larval Salivary Gland    1.8 Larval Trachea    87.075 Larval Carcass    3.95 Adult Head    4.7 Adult Eye    5.15 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    4.7 Adult Crop    1.4 Adult Midgut    3.4 Adult Hindgut    1.5 Adult Malpighian Tubules    2.2 Adult Fat Body    0.9 Adult Salivary Gland no informative data Adult Heart    0.375 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    1.3 Adult Ovary    0.8 Adult Testis    1.2 Adult Male Accessory Gland    2.8 Adult Carcass    3.4 Expression Level Scale  None   Low  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    9.8 Larval Hindgut    0.7 Larval Malpighian Tubules    2.4 Larval Fat Body    2.3 Larval Salivary Gland    1.8 Larval Trachea    87.075 Larval Carcass    3.95 Adult Head    4.7 Adult Eye    5.15 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    4.7 Adult Crop    1.4 Adult Midgut    3.4 Adult Hindgut    1.5 Adult Malpighian Tubules    2.2 Adult Fat Body    0.9 Adult Salivary Gland no informative data Adult Heart    0.375 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    1.3 Adult Ovary    0.8 Adult Testis    1.2 Adult Male Accessory Gland    2.8 Adult Carcass    3.4 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    9.8 Larval Hindgut    0.7 Larval Malpighian Tubules    2.4 Larval Fat Body    2.3 Larval Salivary Gland    1.8 Larval Trachea    87.075 Larval Carcass    3.95 Adult Head    4.7 Adult Eye    5.15 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    4.7 Adult Crop    1.4 Adult Midgut    3.4 Adult Hindgut    1.5 Adult Malpighian Tubules    2.2 Adult Fat Body    0.9 Adult Salivary Gland no informative data Adult Heart    0.375 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    1.3 Adult Ovary    0.8 Adult Testis    1.2 Adult Male Accessory Gland    2.8 Adult Carcass    3.4 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    9.8 Larval Hindgut    0.7 Larval Malpighian Tubules    2.4 Larval Fat Body    2.3 Larval Salivary Gland    1.8 Larval Trachea    87.075 Larval Carcass    3.95 Adult Head    4.7 Adult Eye    5.15 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    4.7 Adult Crop    1.4 Adult Midgut    3.4 Adult Hindgut    1.5 Adult Malpighian Tubules    2.2 Adult Fat Body    0.9 Adult Salivary Gland no informative data Adult Heart    0.375 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    1.3 Adult Ovary    0.8 Adult Testis    1.2 Adult Male Accessory Gland    2.8 Adult Carcass    3.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0032856 expression level Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    9.8 Larval Hindgut    0.7 Larval Malpighian Tubules    2.4 Larval Fat Body    2.3 Larval Salivary Gland    1.8 Larval Trachea    87.075 Larval Carcass    3.95 Adult Head    4.7 Adult Eye    5.15 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    4.7 Adult Crop    1.4 Adult Midgut    3.4 Adult Hindgut    1.5 Adult Malpighian Tubules    2.2 Adult Fat Body    0.9 Adult Salivary Gland no informative data Adult Heart    0.375 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    1.3 Adult Ovary    0.8 Adult Testis    1.2 Adult Male Accessory Gland    2.8 Adult Carcass    3.4 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    9.8 Larval Hindgut    0.7 Larval Malpighian Tubules    2.4 Larval Fat Body    2.3 Larval Salivary Gland    1.8 Larval Trachea    87.075 Larval Carcass    3.95 Adult Head    4.7 Adult Eye    5.15 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    4.7 Adult Crop    1.4 Adult Midgut    3.4 Adult Hindgut    1.5 Adult Malpighian Tubules    2.2 Adult Fat Body    0.9 Adult Salivary Gland no informative data Adult Heart    0.375 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    1.3 Adult Ovary    0.8 Adult Testis    1.2 Adult Male Accessory Gland    2.8 Adult Carcass    3.4 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    9.8 Larval Hindgut    0.7 Larval Malpighian Tubules    2.4 Larval Fat Body    2.3 Larval Salivary Gland    1.8 Larval Trachea    87.075 Larval Carcass    3.95 Adult Head    4.7 Adult Eye    5.15 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    4.7 Adult Crop    1.4 Adult Midgut    3.4 Adult Hindgut    1.5 Adult Malpighian Tubules    2.2 Adult Fat Body    0.9 Adult Salivary Gland no informative data Adult Heart    0.375 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    1.3 Adult Ovary    0.8 Adult Testis    1.2 Adult Male Accessory Gland    2.8 Adult Carcass    3.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    9.8 Larval Hindgut    0.7 Larval Malpighian Tubules    2.4 Larval Fat Body    2.3 Larval Salivary Gland    1.8 Larval Trachea    87.075 Larval Carcass    3.95 Adult Head    4.7 Adult Eye    5.15 Adult Brain    3.5 Adult Thoracic-Abdominal Ganglion    4.7 Adult Crop    1.4 Adult Midgut    3.4 Adult Hindgut    1.5 Adult Malpighian Tubules    2.2 Adult Fat Body    0.9 Adult Salivary Gland no informative data Adult Heart    0.375 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    1.3 Adult Ovary    0.8 Adult Testis    1.2 Adult Male Accessory Gland    2.8 Adult Carcass    3.4 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland no informative data Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    4.7   NA  Eye    5.15   NA  Brain    3.5   0.75  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    4.7   NA  Crop    1.4   9.8  Midgut    3.4   0.7  Hindgut    1.5   2.4  Malpighian Tubules    2.2   2.3  Fat Body    0.9   1.8  Salivary Gland    no informative data   NA  Heart    0.375   87.075  Trachea    NA   NA  VirginFemale Spermatheca    1.6   NA  InseminatedFemale Spermatheca    1.3   NA  Ovary    0.8   NA  Testis    1.2   NA  Male Accessory Gland    2.8   3.95  Carcass    3.4 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_07
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032856 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG16798-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG16798 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG16798GD1784 Phenotype manifest in Allele
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of CG16798 Class Mutagen Stocks Known lesion CG16798MI00073 1 -- CG16798NP3289 1 -- CG16798EP401 P-element activity 0 --
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG16798 Class Mutagen Stocks Known lesion CG16798GD1784 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel6046 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD1784} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}CG16798EP401 NA insertion of enhancer trap binary system P{GawB}CG16798NP3289 No miscellaneous insertions Mi{MIC}CG16798MI00073 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG16798 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 61274 DroID - A comprehensive database of gene and protein interactions. • FBgn0032856 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 35308
Orthologs
Genome-wide drosophilid orthologs	Dana\GF15375 Dere\GG21574 Dgri\GH11656 Dmoj\GI17958 Dper\GL26417 Dpse\GA14156 Dsec\GM23330 Dsim\GD21705 Dvir\GJ17731 Dwil\GK18124 Dyak\GE12596
Curated drosophilid orthologs	Dpse\GA14156
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL000683-PA Aedes aegypti (mosquito) AGAP007878-PA Anopheles gambiae (mosquito) BGIBMGA003167-PA Bombyx mori (silk worm) CPIJ001484 Culex pipens (mosquito) XP_972996.1 Tribolium castaneum (red flour beetle) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • ISCW014468 FBgn0230327 FBgn0220123 FBgn0204900 FBgn0193128 FBgn0178197 FBgn0074185 FBgn0163999 FBgn0140698 FBgn0119136 FBgn0113752 FBgn0092400 CPIJ001484 BGIBMGA003167 AGAP007878 AAEL000683 GLEAN_13505
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	30608 y1 w*; Mi{MIC}CG16798MI00073
Kyoto	113203 w*; P{GawB}CG16798NP3289 / CyO, P{UAS-lacZ.UW14}UW14
VDRC	v6399 w1118; P{GD1784}v6399
Genomic Clones ( 2 )
	BACR03G24 BACR08D17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 12 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE22905
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	LD28569 LD32550 RE02646 RE07064 RE28725 RH13146
Other clones	45650 82977 CK01.27B.E11 CK01.103B.G5 EK162221
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0032856 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35308
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	"CG16798" may correspond to "Scim18". Sequence analysis off ends of P{SUPor-P} in Scim insertion mutant places "Scim18" near/in "CG16798". (Dobie and Karpen, 2001.4.18)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_136186 RefSeq (Proteins) • NP_610030 DDBJ / EMBL / GenBank • AA949983 AAF53889 AAM52737 AC002503 AY122225 BI231614 Entrez Gene - A searchable database of RefSeq genes. • 35308 UniProtKB/TrEMBL • Q9VIM8
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zona pellucida sperm-binding protein (IPR001507)
Linkouts
	BioGRID - A database of protein and genetic interactions • 61274 DroID - A comprehensive database of gene and protein interactions. • FBgn0032856 DRSC - Results from RNAi screens. • FBgn0032856 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0032856 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG16798-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0032856 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35308 InParanoid A subset of ortholog calls from InParanoid. • AAEL000683-PA Aedes aegypti (mosquito) AGAP007878-PA Anopheles gambiae (mosquito) BGIBMGA003167-PA Bombyx mori (silk worm) CPIJ001484 Culex pipens (mosquito) XP_972996.1 Tribolium castaneum (red flour beetle) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 35308 modMine - Data generated by the modENCODE project. • FBgn0032856 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • ISCW014468 FBgn0230327 FBgn0220123 FBgn0204900 FBgn0193128 FBgn0178197 FBgn0074185 FBgn0163999 FBgn0140698 FBgn0119136 FBgn0113752 FBgn0092400 CPIJ001484 BGIBMGA003167 AGAP007878 AAEL000683 GLEAN_13505
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	38C.41 (McGill Drosophila Genome Project, 2001.9.25, Butler, 2001, Butler et al., 2001) CG16798 (Ida et al., 2009)
Name Synonym
Secondary FlyBase IDs
References ( 16 )
Research paper	Baycin-Hizal et al., 2011, J. Proteome Res. 10(6): 2777--2784 GlycoFly: A Database of Drosophila N-linked Glycoproteins Identified Using SPEG-MS Techniques. [FBrf0213834] Ida et al., 2009, Nucleic Acids Res. 37(5): 1423--1437 Genetic screening for modifiers of the DREF pathway in Drosophila melanogaster: identification and characterization of HP6 as a novel target of DREF. [FBrf0207590] Jazwinska and Affolter, 2004, Gene Expression Patterns 4(4): 413--421 A family of genes encoding zona pellucida (ZP) domain proteins is expressed in various epithelial tissues during Drosophila embryogenesis. [FBrf0179263] Butler et al., 2001, Genetics 158(4): 1597--1614 Map position and expression of the genes in the 38 region of Drosophila. [FBrf0138405] Parnas et al., 2001, Neuron 32(3): 415--424 Regulation of postsynaptic structure and protein localization by the Rho-type guanine nucleotide exchange factor dPix. [FBrf0141687]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Butler, 2001, Genetics 158(4): Supplemental Material 3. Gene predictions and transcripts of the cytological region 38. [FBrf0139854]
Personal communication to FlyBase	Bellen, 2010.3.31, BDGP_2010_0401.GDP.xml BDGP_2010_0401.GDP.xml [FBrf0210427] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Dobie and Karpen, 2001.4.18, Helping FlyBase: Scim genes. Helping FlyBase: Scim genes. [FBrf0136026] McGill Drosophila Genome Project, 2001.9.25, FASTA sequences of Gene Predictions of the 38 region. FASTA sequences of Gene Predictions of the 38 region. [FBrf0139855]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]