Gene Dmel\CG11107

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General Information

Symbol

Dmel\CG11107

Species

D. melanogaster

Name

Annotation symbol

CG11107

Feature type

protein_coding_gene

FlyBase ID

FBgn0033160

Gene Model Status

Current

Stock availability

7 publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

43B2-43B2

Sequence location

2R:3,274,692..3,278,528 [+]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG11107 (FBgn0033160). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: ATP-dependent helicase activity; ATP-dependent RNA helicase activity; RNA helicase activity. There is experimental evidence that it is involved in the biological process: neurogenesis. 7 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Domain of unknown function DUF1605; Helicase, C-terminal; Helicase, superfamily 1/2, ATP-binding domain; Helicase-associated domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1636354_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG11107. Gene sequence location is 2R:3274692..3278528.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

43B2-43B2

Limits computationally determined from genome sequence between P{lacW}cos^k16101 and P{EP}CG1600^EP398

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG11107 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.48

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG11107-RA

FBtr0088966

NM_136425

2747

729

CG11107-RB

FBtr0336909

NM_001273837

2610

729

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG11107-PA

FBpp0088040

82.7

729

7.07

NP_610269

AAF59269

CG11107-PB

FBpp0307849

82.7

729

7.07

NP_001260766

AGB93299

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Helicase, C-terminal (IPR001650)

Helicase-associated domain (IPR007502)

Domain of unknown function DUF1605 (IPR011709)

Helicase, superfamily 1/2, ATP-binding domain (IPR014001)

P-loop containing nucleoside triphosphate hydrolase (IPR027417)

DNA/RNA helicase, DEAD/DEAH box type, N-terminal (IPR011545)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q7K3M5

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 1 -- 3

organism | ubiquitous

(Fisher et al., 2012)

Comment:maternally deposited

embryonic stage 4 -- 6

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 7 -- 8

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 9 -- 10

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 11 -- 12

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 13 -- 16

embryonic/larval midgut

(Fisher et al., 2012)

gonad

(Fisher et al., 2012)

organism | faint & ubiquitous

(Fisher et al., 2012)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

catalytic step 2 spliceosome

inferred from direct assay

(Herold et al., 2009)

precatalytic spliceosome

inferred from direct assay

(Herold et al., 2009)

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		395.125
Larval Midgut		72.7
Larval Hindgut		148.4
Larval Malpighian Tubules		109
Larval Fat Body		104.2
Larval Salivary Gland		186.5
Larval Trachea		244.35
Larval Carcass		196.7
Adult Head		125.1
Adult Eye		106.225
Adult Brain		181.6
Adult Thoracic-Abdominal Ganglion		199.9
Adult Crop		164.9
Adult Midgut		86.1
Adult Hindgut		117.7
Adult Malpighian Tubules		98.5
Adult Fat Body		177.4
Adult Salivary Gland		132.4
Adult Heart		134.8
Adult VirginFemale Spermatheca		78.8
Adult InseminatedFemale Spermatheca		106.6
Adult Ovary		254.6
Adult Testis		138.6
Adult Male Accessory Gland		278.5
Adult Carcass		146.2
Expression Level Scale		None Low Moderate

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		395.125
Larval Midgut		72.7
Larval Hindgut		148.4
Larval Malpighian Tubules		109
Larval Fat Body		104.2
Larval Salivary Gland		186.5
Larval Trachea		244.35
Larval Carcass		196.7
Adult Head		125.1
Adult Eye		106.225
Adult Brain		181.6
Adult Thoracic-Abdominal Ganglion		199.9
Adult Crop		164.9
Adult Midgut		86.1
Adult Hindgut		117.7
Adult Malpighian Tubules		98.5
Adult Fat Body		177.4
Adult Salivary Gland		132.4
Adult Heart		134.8
Adult VirginFemale Spermatheca		78.8
Adult InseminatedFemale Spermatheca		106.6
Adult Ovary		254.6
Adult Testis		138.6
Adult Male Accessory Gland		278.5
Adult Carcass		146.2
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		395.125
Larval Midgut		72.7
Larval Hindgut		148.4
Larval Malpighian Tubules		109
Larval Fat Body		104.2
Larval Salivary Gland		186.5
Larval Trachea		244.35
Larval Carcass		196.7
Adult Head		125.1
Adult Eye		106.225
Adult Brain		181.6
Adult Thoracic-Abdominal Ganglion		199.9
Adult Crop		164.9
Adult Midgut		86.1
Adult Hindgut		117.7
Adult Malpighian Tubules		98.5
Adult Fat Body		177.4
Adult Salivary Gland		132.4
Adult Heart		134.8
Adult VirginFemale Spermatheca		78.8
Adult InseminatedFemale Spermatheca		106.6
Adult Ovary		254.6
Adult Testis		138.6
Adult Male Accessory Gland		278.5
Adult Carcass		146.2
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		395.125
Larval Midgut		72.7
Larval Hindgut		148.4
Larval Malpighian Tubules		109
Larval Fat Body		104.2
Larval Salivary Gland		186.5
Larval Trachea		244.35
Larval Carcass		196.7
Adult Head		125.1
Adult Eye		106.225
Adult Brain		181.6
Adult Thoracic-Abdominal Ganglion		199.9
Adult Crop		164.9
Adult Midgut		86.1
Adult Hindgut		117.7
Adult Malpighian Tubules		98.5
Adult Fat Body		177.4
Adult Salivary Gland		132.4
Adult Heart		134.8
Adult VirginFemale Spermatheca		78.8
Adult InseminatedFemale Spermatheca		106.6
Adult Ovary		254.6
Adult Testis		138.6
Adult Male Accessory Gland		278.5
Adult Carcass		146.2
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		395.125
Larval Midgut		72.7
Larval Hindgut		148.4
Larval Malpighian Tubules		109
Larval Fat Body		104.2
Larval Salivary Gland		186.5
Larval Trachea		244.35
Larval Carcass		196.7
Adult Head		125.1
Adult Eye		106.225
Adult Brain		181.6
Adult Thoracic-Abdominal Ganglion		199.9
Adult Crop		164.9
Adult Midgut		86.1
Adult Hindgut		117.7
Adult Malpighian Tubules		98.5
Adult Fat Body		177.4
Adult Salivary Gland		132.4
Adult Heart		134.8
Adult VirginFemale Spermatheca		78.8
Adult InseminatedFemale Spermatheca		106.6
Adult Ovary		254.6
Adult Testis		138.6
Adult Male Accessory Gland		278.5
Adult Carcass		146.2
Expression Level Scale		None Low Moderate High

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		395.125
Larval Midgut		72.7
Larval Hindgut		148.4
Larval Malpighian Tubules		109
Larval Fat Body		104.2
Larval Salivary Gland		186.5
Larval Trachea		244.35
Larval Carcass		196.7
Adult Head		125.1
Adult Eye		106.225
Adult Brain		181.6
Adult Thoracic-Abdominal Ganglion		199.9
Adult Crop		164.9
Adult Midgut		86.1
Adult Hindgut		117.7
Adult Malpighian Tubules		98.5
Adult Fat Body		177.4
Adult Salivary Gland		132.4
Adult Heart		134.8
Adult VirginFemale Spermatheca		78.8
Adult InseminatedFemale Spermatheca		106.6
Adult Ovary		254.6
Adult Testis		138.6
Adult Male Accessory Gland		278.5
Adult Carcass		146.2
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		395.125
Larval Midgut		72.7
Larval Hindgut		148.4
Larval Malpighian Tubules		109
Larval Fat Body		104.2
Larval Salivary Gland		186.5
Larval Trachea		244.35
Larval Carcass		196.7
Adult Head		125.1
Adult Eye		106.225
Adult Brain		181.6
Adult Thoracic-Abdominal Ganglion		199.9
Adult Crop		164.9
Adult Midgut		86.1
Adult Hindgut		117.7
Adult Malpighian Tubules		98.5
Adult Fat Body		177.4
Adult Salivary Gland		132.4
Adult Heart		134.8
Adult VirginFemale Spermatheca		78.8
Adult InseminatedFemale Spermatheca		106.6
Adult Ovary		254.6
Adult Testis		138.6
Adult Male Accessory Gland		278.5
Adult Carcass		146.2
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		395.125
Larval Midgut		72.7
Larval Hindgut		148.4
Larval Malpighian Tubules		109
Larval Fat Body		104.2
Larval Salivary Gland		186.5
Larval Trachea		244.35
Larval Carcass		196.7
Adult Head		125.1
Adult Eye		106.225
Adult Brain		181.6
Adult Thoracic-Abdominal Ganglion		199.9
Adult Crop		164.9
Adult Midgut		86.1
Adult Hindgut		117.7
Adult Malpighian Tubules		98.5
Adult Fat Body		177.4
Adult Salivary Gland		132.4
Adult Heart		134.8
Adult VirginFemale Spermatheca		78.8
Adult InseminatedFemale Spermatheca		106.6
Adult Ovary		254.6
Adult Testis		138.6
Adult Male Accessory Gland		278.5
Adult Carcass		146.2
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	125.1
NA	Eye	106.225
NA	Brain	181.6
395.125	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	199.9
NA	Crop	164.9
72.7	Midgut	86.1
148.4	Hindgut	117.7
109	Malpighian Tubules	98.5
104.2	Fat Body	177.4
186.5	Salivary Gland	132.4
NA	Heart	134.8
244.35	Trachea	NA
NA	VirginFemale Spermatheca	78.8
NA	InseminatedFemale Spermatheca	106.6
NA	Ovary	254.6
NA	Testis	138.6
NA	Male Accessory Gland	278.5
196.7	Carcass	146.2

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		35
central nervous system, larvae L3		24
central nervous system, pupae P8		11
head, virgin 1-day female		7
head, virgin 4-day female		6
head, virgin 20-day female		11
head, mated 1-day female		5
head, mated 4-day female		6
head, mated 20-day female		7
head, mated 1-day male		8
head, mated 4-day male		8
head, mated 20-day male		13
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		4
digestive system, larvae L3 wandering		9
digestive system, 1-day adult		6
digestive system, 4-day adult		7
digestive system, 20-day adult		7
fat body, larvae L3 wandering		3
fat body, white prepupae		6
fat body, pupae P8		6
carcass, larvae L3 wandering		21
carcass, 1-day adult		6
carcass, 4-day adult		8
carcass, 20-day adult		9
ovary, virgin 4-day female		32
ovary, mated 4-day female		24
testis, mated 4-day male		23
accessory gland, mated 4-day male		11
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(35)
central nervous system, larvae L3		24
central nervous system, pupae P8		11
head, virgin 1-day female		7
head, virgin 4-day female		6
head, virgin 20-day female		11
head, mated 1-day female		5
head, mated 4-day female		6
head, mated 20-day female		7
head, mated 1-day male		8
head, mated 4-day male		8
head, mated 20-day male		13
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		4
digestive system, larvae L3 wandering		9
digestive system, 1-day adult		6
digestive system, 4-day adult		7
digestive system, 20-day adult		7
fat body, larvae L3 wandering		3
fat body, white prepupae		6
fat body, pupae P8		6
carcass, larvae L3 wandering		21
carcass, 1-day adult		6
carcass, 4-day adult		8
carcass, 20-day adult		9
ovary, virgin 4-day female		(32)
ovary, mated 4-day female		24
testis, mated 4-day male		23
accessory gland, mated 4-day male		11
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		35
central nervous system, larvae L3		24
central nervous system, pupae P8		11
head, virgin 1-day female		7
head, virgin 4-day female		6
head, virgin 20-day female		11
head, mated 1-day female		5
head, mated 4-day female		6
head, mated 20-day female		7
head, mated 1-day male		8
head, mated 4-day male		8
head, mated 20-day male		13
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		4
digestive system, larvae L3 wandering		9
digestive system, 1-day adult		6
digestive system, 4-day adult		7
digestive system, 20-day adult		7
fat body, larvae L3 wandering		3
fat body, white prepupae		6
fat body, pupae P8		6
carcass, larvae L3 wandering		21
carcass, 1-day adult		6
carcass, 4-day adult		8
carcass, 20-day adult		9
ovary, virgin 4-day female		32
ovary, mated 4-day female		24
testis, mated 4-day male		23
accessory gland, mated 4-day male		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		35
central nervous system, larvae L3		24
central nervous system, pupae P8		11
head, virgin 1-day female		7
head, virgin 4-day female		6
head, virgin 20-day female		11
head, mated 1-day female		5
head, mated 4-day female		6
head, mated 20-day female		7
head, mated 1-day male		8
head, mated 4-day male		8
head, mated 20-day male		13
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		4
digestive system, larvae L3 wandering		9
digestive system, 1-day adult		6
digestive system, 4-day adult		7
digestive system, 20-day adult		7
fat body, larvae L3 wandering		3
fat body, white prepupae		6
fat body, pupae P8		6
carcass, larvae L3 wandering		21
carcass, 1-day adult		6
carcass, 4-day adult		8
carcass, 20-day adult		9
ovary, virgin 4-day female		32
ovary, mated 4-day female		24
testis, mated 4-day male		23
accessory gland, mated 4-day male		11
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		35
central nervous system, larvae L3		24
central nervous system, pupae P8		11
head, virgin 1-day female		7
head, virgin 4-day female		6
head, virgin 20-day female		11
head, mated 1-day female		5
head, mated 4-day female		6
head, mated 20-day female		7
head, mated 1-day male		8
head, mated 4-day male		8
head, mated 20-day male		13
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		4
digestive system, larvae L3 wandering		9
digestive system, 1-day adult		6
digestive system, 4-day adult		7
digestive system, 20-day adult		7
fat body, larvae L3 wandering		3
fat body, white prepupae		6
fat body, pupae P8		6
carcass, larvae L3 wandering		21
carcass, 1-day adult		6
carcass, 4-day adult		8
carcass, 20-day adult		9
ovary, virgin 4-day female		32
ovary, mated 4-day female		24
testis, mated 4-day male		23
accessory gland, mated 4-day male		11
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(35)
central nervous system, larvae L3		24
central nervous system, pupae P8		11
head, virgin 1-day female		7
head, virgin 4-day female		6
head, virgin 20-day female		11
head, mated 1-day female		5
head, mated 4-day female		6
head, mated 20-day female		7
head, mated 1-day male		8
head, mated 4-day male		8
head, mated 20-day male		13
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		4
digestive system, larvae L3 wandering		9
digestive system, 1-day adult		6
digestive system, 4-day adult		7
digestive system, 20-day adult		7
fat body, larvae L3 wandering		3
fat body, white prepupae		6
fat body, pupae P8		6
carcass, larvae L3 wandering		21
carcass, 1-day adult		6
carcass, 4-day adult		8
carcass, 20-day adult		9
ovary, virgin 4-day female		32
ovary, mated 4-day female		24
testis, mated 4-day male		23
accessory gland, mated 4-day male		11
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		35
central nervous system, larvae L3		24
central nervous system, pupae P8		11
head, virgin 1-day female		7
head, virgin 4-day female		6
head, virgin 20-day female		11
head, mated 1-day female		5
head, mated 4-day female		6
head, mated 20-day female		7
head, mated 1-day male		8
head, mated 4-day male		8
head, mated 20-day male		13
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		4
digestive system, larvae L3 wandering		9
digestive system, 1-day adult		6
digestive system, 4-day adult		7
digestive system, 20-day adult		7
fat body, larvae L3 wandering		3
fat body, white prepupae		6
fat body, pupae P8		6
carcass, larvae L3 wandering		21
carcass, 1-day adult		6
carcass, 4-day adult		8
carcass, 20-day adult		9
ovary, virgin 4-day female		32
ovary, mated 4-day female		24
testis, mated 4-day male		23
accessory gland, mated 4-day male		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		35
central nervous system, larvae L3		24
central nervous system, pupae P8		11
head, virgin 1-day female		7
head, virgin 4-day female		6
head, virgin 20-day female		11
head, mated 1-day female		5
head, mated 4-day female		6
head, mated 20-day female		7
head, mated 1-day male		8
head, mated 4-day male		8
head, mated 20-day male		13
salivary gland, larvae L3 wandering		1
salivary gland, white prepupae		4
digestive system, larvae L3 wandering		9
digestive system, 1-day adult		6
digestive system, 4-day adult		7
digestive system, 20-day adult		7
fat body, larvae L3 wandering		3
fat body, white prepupae		6
fat body, pupae P8		6
carcass, larvae L3 wandering		21
carcass, 1-day adult		6
carcass, 4-day adult		8
carcass, 20-day adult		9
ovary, virgin 4-day female		32
ovary, mated 4-day female		24
testis, mated 4-day male		23
accessory gland, mated 4-day male		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		61
embryo 02-04hr		90
embryo 04-06hr		111
embryo 06-08hr		117
embryo 08-10hr		106
embryo 10-12hr		90
embryo 12-14hr		48
embryo 14-16hr		45
embryo 16-18hr		29
embryo 18-20hr		21
embryo 20-22hr		35
embryo 22-24hr		29
larva L1		51
larva L2		33
larva L3 12hr old		25
larva L3 puffstage 1-2		19
larva L3 puffstage 3-6		27
larva L3 puffstage 7-9		30
white prepupae new		28
white prepupae 12hr		34
white prepupae 24hr		40
pupae 2d postWPP		27
pupae 3d postWPP		16
pupae 4d postWPP		16
adult male 01day		19
adult male 05day		27
adult male 30day		26
adult female 01day		46
adult female 05day		49
adult female 30day		49
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		(61)
embryo 02-04hr		(90)
embryo 04-06hr		(111)
embryo 06-08hr		(117)
embryo 08-10hr		(106)
embryo 10-12hr		(90)
embryo 12-14hr		(48)
embryo 14-16hr		(45)
embryo 16-18hr		(29)
embryo 18-20hr		21
embryo 20-22hr		(35)
embryo 22-24hr		(29)
larva L1		(51)
larva L2		(33)
larva L3 12hr old		25
larva L3 puffstage 1-2		19
larva L3 puffstage 3-6		(27)
larva L3 puffstage 7-9		(30)
white prepupae new		(28)
white prepupae 12hr		(34)
white prepupae 24hr		(40)
pupae 2d postWPP		(27)
pupae 3d postWPP		16
pupae 4d postWPP		16
adult male 01day		19
adult male 05day		(27)
adult male 30day		26
adult female 01day		(46)
adult female 05day		(49)
adult female 30day		(49)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		61
embryo 02-04hr		90
embryo 04-06hr		(111)
embryo 06-08hr		(117)
embryo 08-10hr		106
embryo 10-12hr		90
embryo 12-14hr		48
embryo 14-16hr		45
embryo 16-18hr		29
embryo 18-20hr		21
embryo 20-22hr		35
embryo 22-24hr		29
larva L1		51
larva L2		33
larva L3 12hr old		25
larva L3 puffstage 1-2		19
larva L3 puffstage 3-6		27
larva L3 puffstage 7-9		30
white prepupae new		28
white prepupae 12hr		34
white prepupae 24hr		40
pupae 2d postWPP		27
pupae 3d postWPP		16
pupae 4d postWPP		16
adult male 01day		19
adult male 05day		27
adult male 30day		26
adult female 01day		46
adult female 05day		49
adult female 30day		49
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		61
embryo 02-04hr		90
embryo 04-06hr		111
embryo 06-08hr		117
embryo 08-10hr		106
embryo 10-12hr		90
embryo 12-14hr		48
embryo 14-16hr		45
embryo 16-18hr		29
embryo 18-20hr		21
embryo 20-22hr		35
embryo 22-24hr		29
larva L1		51
larva L2		33
larva L3 12hr old		25
larva L3 puffstage 1-2		19
larva L3 puffstage 3-6		27
larva L3 puffstage 7-9		30
white prepupae new		28
white prepupae 12hr		34
white prepupae 24hr		40
pupae 2d postWPP		27
pupae 3d postWPP		16
pupae 4d postWPP		16
adult male 01day		19
adult male 05day		27
adult male 30day		26
adult female 01day		46
adult female 05day		49
adult female 30day		49
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		61
embryo 02-04hr		90
embryo 04-06hr		111
embryo 06-08hr		117
embryo 08-10hr		106
embryo 10-12hr		90
embryo 12-14hr		48
embryo 14-16hr		45
embryo 16-18hr		29
embryo 18-20hr		21
embryo 20-22hr		35
embryo 22-24hr		29
larva L1		51
larva L2		33
larva L3 12hr old		25
larva L3 puffstage 1-2		19
larva L3 puffstage 3-6		27
larva L3 puffstage 7-9		30
white prepupae new		28
white prepupae 12hr		34
white prepupae 24hr		40
pupae 2d postWPP		27
pupae 3d postWPP		16
pupae 4d postWPP		16
adult male 01day		19
adult male 05day		27
adult male 30day		26
adult female 01day		46
adult female 05day		49
adult female 30day		49
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		(61)
embryo 02-04hr		(90)
embryo 04-06hr		(111)
embryo 06-08hr		(117)
embryo 08-10hr		(106)
embryo 10-12hr		(90)
embryo 12-14hr		(48)
embryo 14-16hr		(45)
embryo 16-18hr		29
embryo 18-20hr		21
embryo 20-22hr		(35)
embryo 22-24hr		29
larva L1		(51)
larva L2		(33)
larva L3 12hr old		25
larva L3 puffstage 1-2		19
larva L3 puffstage 3-6		27
larva L3 puffstage 7-9		30
white prepupae new		28
white prepupae 12hr		(34)
white prepupae 24hr		(40)
pupae 2d postWPP		27
pupae 3d postWPP		16
pupae 4d postWPP		16
adult male 01day		19
adult male 05day		27
adult male 30day		26
adult female 01day		(46)
adult female 05day		(49)
adult female 30day		(49)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		61
embryo 02-04hr		90
embryo 04-06hr		111
embryo 06-08hr		117
embryo 08-10hr		106
embryo 10-12hr		90
embryo 12-14hr		48
embryo 14-16hr		45
embryo 16-18hr		29
embryo 18-20hr		21
embryo 20-22hr		35
embryo 22-24hr		29
larva L1		51
larva L2		33
larva L3 12hr old		25
larva L3 puffstage 1-2		19
larva L3 puffstage 3-6		27
larva L3 puffstage 7-9		30
white prepupae new		28
white prepupae 12hr		34
white prepupae 24hr		40
pupae 2d postWPP		27
pupae 3d postWPP		16
pupae 4d postWPP		16
adult male 01day		19
adult male 05day		27
adult male 30day		26
adult female 01day		46
adult female 05day		49
adult female 30day		49
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		61
embryo 02-04hr		90
embryo 04-06hr		111
embryo 06-08hr		117
embryo 08-10hr		106
embryo 10-12hr		90
embryo 12-14hr		48
embryo 14-16hr		45
embryo 16-18hr		29
embryo 18-20hr		21
embryo 20-22hr		35
embryo 22-24hr		29
larva L1		51
larva L2		33
larva L3 12hr old		25
larva L3 puffstage 1-2		19
larva L3 puffstage 3-6		27
larva L3 puffstage 7-9		30
white prepupae new		28
white prepupae 12hr		34
white prepupae 24hr		40
pupae 2d postWPP		27
pupae 3d postWPP		16
pupae 4d postWPP		16
adult male 01day		19
adult male 05day		27
adult male 30day		26
adult female 01day		46
adult female 05day		49
adult female 30day		49
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		60
Schneider line 2 Sg4		54
embryonic 1182-4H		34
embryonic GM2		31
embryonic Kc167		21
embryonic S1		38
embryonic S3		50
leg disc CME L1		32
wing disc CME-W2		27
wing disc ML-DmD8		32
wing disc ML-DmD9		33
wing disc ML-DmD16-c3		25
wing disc ML-DmD21		58
wing disc ML-DmD32		25
haltere disc ML-DmD17-c3		47
eye-antennal disc ML-DmD11		29
antennal disc ML-DmD20-c5		42
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		32
CNS ML-DmBG2-c2		36
tumorous blood cells mbn2		16
ovary fGS/OSS		26
ovary OSC		21
ovary OSS		15
Expression Level Scale		Very low Low Moderate Moderately high High

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		(60)
Schneider line 2 Sg4		(54)
embryonic 1182-4H		(34)
embryonic GM2		(31)
embryonic Kc167		21
embryonic S1		(38)
embryonic S3		(50)
leg disc CME L1		(32)
wing disc CME-W2		(27)
wing disc ML-DmD8		(32)
wing disc ML-DmD9		(33)
wing disc ML-DmD16-c3		25
wing disc ML-DmD21		(58)
wing disc ML-DmD32		25
haltere disc ML-DmD17-c3		(47)
eye-antennal disc ML-DmD11		(29)
antennal disc ML-DmD20-c5		(42)
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		(32)
CNS ML-DmBG2-c2		(36)
tumorous blood cells mbn2		16
ovary fGS/OSS		26
ovary OSC		21
ovary OSS		15
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		60
Schneider line 2 Sg4		54
embryonic 1182-4H		34
embryonic GM2		31
embryonic Kc167		21
embryonic S1		38
embryonic S3		50
leg disc CME L1		32
wing disc CME-W2		27
wing disc ML-DmD8		32
wing disc ML-DmD9		33
wing disc ML-DmD16-c3		25
wing disc ML-DmD21		58
wing disc ML-DmD32		25
haltere disc ML-DmD17-c3		47
eye-antennal disc ML-DmD11		29
antennal disc ML-DmD20-c5		42
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		32
CNS ML-DmBG2-c2		36
tumorous blood cells mbn2		16
ovary fGS/OSS		26
ovary OSC		21
ovary OSS		15
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		60
Schneider line 2 Sg4		54
embryonic 1182-4H		34
embryonic GM2		31
embryonic Kc167		21
embryonic S1		38
embryonic S3		50
leg disc CME L1		32
wing disc CME-W2		27
wing disc ML-DmD8		32
wing disc ML-DmD9		33
wing disc ML-DmD16-c3		25
wing disc ML-DmD21		58
wing disc ML-DmD32		25
haltere disc ML-DmD17-c3		47
eye-antennal disc ML-DmD11		29
antennal disc ML-DmD20-c5		42
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		32
CNS ML-DmBG2-c2		36
tumorous blood cells mbn2		16
ovary fGS/OSS		26
ovary OSC		21
ovary OSS		15
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		60
Schneider line 2 Sg4		54
embryonic 1182-4H		34
embryonic GM2		31
embryonic Kc167		21
embryonic S1		38
embryonic S3		50
leg disc CME L1		32
wing disc CME-W2		27
wing disc ML-DmD8		32
wing disc ML-DmD9		33
wing disc ML-DmD16-c3		25
wing disc ML-DmD21		58
wing disc ML-DmD32		25
haltere disc ML-DmD17-c3		47
eye-antennal disc ML-DmD11		29
antennal disc ML-DmD20-c5		42
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		32
CNS ML-DmBG2-c2		36
tumorous blood cells mbn2		16
ovary fGS/OSS		26
ovary OSC		21
ovary OSS		15
Expression Level Scale		Very low Low Moderate Moderately high High

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		(60)
Schneider line 2 Sg4		(54)
embryonic 1182-4H		(34)
embryonic GM2		31
embryonic Kc167		21
embryonic S1		(38)
embryonic S3		(50)
leg disc CME L1		32
wing disc CME-W2		27
wing disc ML-DmD8		32
wing disc ML-DmD9		(33)
wing disc ML-DmD16-c3		25
wing disc ML-DmD21		(58)
wing disc ML-DmD32		25
haltere disc ML-DmD17-c3		(47)
eye-antennal disc ML-DmD11		29
antennal disc ML-DmD20-c5		(42)
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		32
CNS ML-DmBG2-c2		(36)
tumorous blood cells mbn2		16
ovary fGS/OSS		26
ovary OSC		21
ovary OSS		15
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		60
Schneider line 2 Sg4		54
embryonic 1182-4H		34
embryonic GM2		31
embryonic Kc167		21
embryonic S1		38
embryonic S3		50
leg disc CME L1		32
wing disc CME-W2		27
wing disc ML-DmD8		32
wing disc ML-DmD9		33
wing disc ML-DmD16-c3		25
wing disc ML-DmD21		58
wing disc ML-DmD32		25
haltere disc ML-DmD17-c3		47
eye-antennal disc ML-DmD11		29
antennal disc ML-DmD20-c5		42
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		32
CNS ML-DmBG2-c2		36
tumorous blood cells mbn2		16
ovary fGS/OSS		26
ovary OSC		21
ovary OSS		15
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		60
Schneider line 2 Sg4		54
embryonic 1182-4H		34
embryonic GM2		31
embryonic Kc167		21
embryonic S1		38
embryonic S3		50
leg disc CME L1		32
wing disc CME-W2		27
wing disc ML-DmD8		32
wing disc ML-DmD9		33
wing disc ML-DmD16-c3		25
wing disc ML-DmD21		58
wing disc ML-DmD32		25
haltere disc ML-DmD17-c3		47
eye-antennal disc ML-DmD11		29
antennal disc ML-DmD20-c5		42
mixed discs ML-DmD4-c1		25
CNS ML-DmBG1-c1		32
CNS ML-DmBG2-c2		36
tumorous blood cells mbn2		16
ovary fGS/OSS		26
ovary OSC		21
ovary OSS		15
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		8
cold shock, 4-day adult		6
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		11
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		17
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		6
Ethanol 2.5% 3 hrs, larvae L3		27
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		12
Caffeine 1.5 mg/ml 4 hrs, larvae L3		8
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		17
Caffeine 25 mg/ml 48 hrs, 4-day adult		6
Paraquat 5 mM 48 hrs, 4-day adult		20
Paraquat 10 mM 48 hrs, 4-day adult		22
Rotenone 2 μg 12 hrs, larvae L3		17
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		8
cold shock, 4-day adult		6
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		11
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		17
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		6
Ethanol 2.5% 3 hrs, larvae L3		(27)
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		12
Caffeine 1.5 mg/ml 4 hrs, larvae L3		8
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		17
Caffeine 25 mg/ml 48 hrs, 4-day adult		6
Paraquat 5 mM 48 hrs, 4-day adult		20
Paraquat 10 mM 48 hrs, 4-day adult		22
Rotenone 2 μg 12 hrs, larvae L3		17
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		8
cold shock, 4-day adult		6
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		11
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		17
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		6
Ethanol 2.5% 3 hrs, larvae L3		27
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		12
Caffeine 1.5 mg/ml 4 hrs, larvae L3		8
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		17
Caffeine 25 mg/ml 48 hrs, 4-day adult		6
Paraquat 5 mM 48 hrs, 4-day adult		20
Paraquat 10 mM 48 hrs, 4-day adult		22
Rotenone 2 μg 12 hrs, larvae L3		17
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		8
cold shock, 4-day adult		6
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		11
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		17
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		6
Ethanol 2.5% 3 hrs, larvae L3		27
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		12
Caffeine 1.5 mg/ml 4 hrs, larvae L3		8
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		17
Caffeine 25 mg/ml 48 hrs, 4-day adult		6
Paraquat 5 mM 48 hrs, 4-day adult		20
Paraquat 10 mM 48 hrs, 4-day adult		22
Rotenone 2 μg 12 hrs, larvae L3		17
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		8
cold shock, 4-day adult		6
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		11
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		17
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		6
Ethanol 2.5% 3 hrs, larvae L3		27
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		12
Caffeine 1.5 mg/ml 4 hrs, larvae L3		8
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		17
Caffeine 25 mg/ml 48 hrs, 4-day adult		6
Paraquat 5 mM 48 hrs, 4-day adult		20
Paraquat 10 mM 48 hrs, 4-day adult		22
Rotenone 2 μg 12 hrs, larvae L3		17
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		8
cold shock, 4-day adult		6
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		11
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		17
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		6
Ethanol 2.5% 3 hrs, larvae L3		27
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		12
Caffeine 1.5 mg/ml 4 hrs, larvae L3		8
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		17
Caffeine 25 mg/ml 48 hrs, 4-day adult		6
Paraquat 5 mM 48 hrs, 4-day adult		20
Paraquat 10 mM 48 hrs, 4-day adult		22
Rotenone 2 μg 12 hrs, larvae L3		17
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		8
cold shock, 4-day adult		6
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		11
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		17
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		6
Ethanol 2.5% 3 hrs, larvae L3		27
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		12
Caffeine 1.5 mg/ml 4 hrs, larvae L3		8
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		17
Caffeine 25 mg/ml 48 hrs, 4-day adult		6
Paraquat 5 mM 48 hrs, 4-day adult		20
Paraquat 10 mM 48 hrs, 4-day adult		22
Rotenone 2 μg 12 hrs, larvae L3		17
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		8
cold shock, 4-day adult		6
heat shock, 4-day adult		15
Cadmium 50 mM 6 hrs, larvae L3		15
Cadmium 50 mM 12 hrs, larvae L3		11
Cadmium 50 mM 48 hrs, 4-day adult		15
Cadmium 100 mM 48 hrs, 4-day adult		17
Copper 0.5 mM 12 hrs, larvae L3		7
Copper 15 mM 48 hrs, 4-day adult		8
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		6
Ethanol 2.5% 3 hrs, larvae L3		27
Ethanol 5% 3 hrs, larvae L3		10
Ethanol 10% 3 hrs, larvae L3		12
Caffeine 1.5 mg/ml 4 hrs, larvae L3		8
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		17
Caffeine 25 mg/ml 48 hrs, 4-day adult		6
Paraquat 5 mM 48 hrs, 4-day adult		20
Paraquat 10 mM 48 hrs, 4-day adult		22
Rotenone 2 μg 12 hrs, larvae L3		17
Rotenone 8 μg 12 hrs, larvae L3		15
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010, Graveley et al., 2011)

External Data & Images

Linkouts

BDGP expression data

•

GM13272

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0033160

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG11107-RA

FlyExpress - Embryonic expression images (BDGP data)

•

Show all FlyExpress processed images for CG11107

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

lethal

CG11107^GD7199

partially lethal - majority die | pupal stage, with Scer\GAL4^pnr-MD237

CG11107^GD7199

Other Phenotypes

Allele

neuroanatomy defective | larval stage

CG11107^GD7199

visible, with Scer\GAL4^pnr-MD237

CG11107^GD7199

Phenotype manifest in

Allele

embryonic/larval neuroblast | larval stage

CG11107^GD7199

ganglion mother cell | larval stage

CG11107^GD7199

mesothoracic tergum, with Scer\GAL4^pnr-MD237

CG11107^GD7199

Classical Alleles ( 3 )

For All Classical Alleles Show

Allele of CG11107	Mutagen	Stocks	Known lesion
CG11107^KG02727	P-element activity	2	--
CG11107^5-SZ-3362		1	--
CG11107^CB-5084-3		1	--

Alleles Carried on Transgenic Constructs ( 4 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG11107	Mutagen	Stocks	Known lesion
CG11107^GD7199	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG11107^GL01236	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG11107^HMS02393	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG11107^NIG.11107R	in vitro construct - RNAi in vitro construct - regulatory fusion	0	Yes