• Home
• Tools
  • Tools Overview
  • Query Tools

    
    • QuickSearch
    • QueryBuilder
    • TermLink
    • CytoSearch
    • RNA-Seq Search
    • Interactions Browser
    • ImageBrowse
    • Find A Person
    • Google™ FlyBase
  • Genomic/Map Tools

    
    • BLAST
    • GBrowse
    • GBrowse 2 Beta
    • CytoSearch
    • Feature Mapper
    • Aberrations Maps
    • Chromosome Maps
    • Coordinates Converter
  • Retrieve/Convert

    
    • Batch Download
    • Coordinates Converter
    • ID Converter
  • Data Submission

    
    • Fast-Track Your Paper
    • Submit Personal Comm
    • Add A New Person
    • Update Person Info
  • People

    
    • Find A Person
    • Add A New Person
    • Update Person Info
• Files
  • Files Overview
  • Current release
  • Archived releases
  • Map Conversion
  • FTP site:
  • Releases (FTP)
  • Genomes (FTP)
• Species
  • Phylogeny
  • Sequenced Species
  • Synteny Table
  • Color Illustrations
  • Abbreviations
• Documents
  • About FlyBase
  • Reference Manual:
  • Sections
  • Contents
  • Nomenclature
  • Release Notes
• Resources
  • All Resources
  • Model Organisms
  • Stock Collections
  • Vectors & Constructs
  • Other links:
  • BDGP
  • DGRC
  • DIS by issue
  • FlyExpress
  • Interactive Fly
  • modENCODE
  • Textpresso for Fly
• News
  • News
  • FlyBase Forum
  • FlyBase Positions
  • Meetings
  • Courses
  • Fly Board
  • White papers
  • Funding
  • bionet.dros
• Help
  • Google™ FlyBase
  • Site Map
  • FAQs
  • FlyBase Guides
  • Video Tutorials
  • Report help
  • New to Flies
  • Pers. comm.
  • Author guidelines
  • Contact FlyBase
• Archives
  • Prior Release
  • Other Archives
  • Coordinate Converter

Gene Dmel\β3GalTII

General Information
Symbol	Dmel\β3GalTII	Species	D. melanogaster
Name	Galactosyltransferase II	Annotation symbol	CG8734
Feature type	protein_coding_gene	FlyBase ID	FBgn0033315
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	44D5-44D5	Sequence location	2R:4,513,686..4,515,116 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Galactosyltransferase II is referred to in FlyBase by the symbol Dmel\β3GalTII (CG8734, FBgn0033315). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: galactosyltransferase activity. There is experimental evidence that it is involved in the biological process: glycosaminoglycan biosynthetic process; heparan sulfate proteoglycan biosynthetic process. 4 alleles are reported. The phenotypes of these alleles are annotated with: eye; interommatidial bristle; wing. It has one annotated transcript and one annotated polypeptide. Protein features are: Glycosyl transferase, family 31. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1627139_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of beta3GalTII. Gene sequence location is 2R:4513686..4515116.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 44D5-44D5   Limits computationally determined from genome sequence between P{lacW}Vps25k08904&P{lacW}ptck02507 and P{PZ}l(2)44DEa05847
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\β3GalTII for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.43 Gene model reviewed during 5.49
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) β3GalTII-RA FBtr0088728  NM_136555   1431   382
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein β3GalTII-PA   FBpp0087807   44.4   382   9.20     NP_610399   AAF59065
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Glycosyl transferase, family 31 (IPR002659)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE013599 AAF59065   BT022240   BT022408   BT022911   CO270652   CO298911   EC197329
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	A1Z7G9
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    69.9 Larval Midgut    23.7 Larval Hindgut    24.6 Larval Malpighian Tubules    29.4 Larval Fat Body    21.8 Larval Salivary Gland    37.4 Larval Trachea    47.55 Larval Carcass    31.85 Adult Head    28.3 Adult Eye    30.4 Adult Brain    54 Adult Thoracic-Abdominal Ganglion    61.6 Adult Crop    25.6 Adult Midgut    38.3 Adult Hindgut    33.9 Adult Malpighian Tubules    22.6 Adult Fat Body    22.6 Adult Salivary Gland    32.7 Adult Heart    26.5 Adult VirginFemale Spermatheca    22.1 Adult InseminatedFemale Spermatheca    23.5 Adult Ovary    95.7 Adult Testis    12.5 Adult Male Accessory Gland    29.8 Adult Carcass    27.5 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    69.9 Larval Midgut    23.7 Larval Hindgut    24.6 Larval Malpighian Tubules    29.4 Larval Fat Body    21.8 Larval Salivary Gland    37.4 Larval Trachea    47.55 Larval Carcass    31.85 Adult Head    28.3 Adult Eye    30.4 Adult Brain    54 Adult Thoracic-Abdominal Ganglion    61.6 Adult Crop    25.6 Adult Midgut    38.3 Adult Hindgut    33.9 Adult Malpighian Tubules    22.6 Adult Fat Body    22.6 Adult Salivary Gland    32.7 Adult Heart    26.5 Adult VirginFemale Spermatheca    22.1 Adult InseminatedFemale Spermatheca    23.5 Adult Ovary    95.7 Adult Testis    12.5 Adult Male Accessory Gland    29.8 Adult Carcass    27.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    69.9 Larval Midgut    23.7 Larval Hindgut    24.6 Larval Malpighian Tubules    29.4 Larval Fat Body    21.8 Larval Salivary Gland    37.4 Larval Trachea    47.55 Larval Carcass    31.85 Adult Head    28.3 Adult Eye    30.4 Adult Brain    54 Adult Thoracic-Abdominal Ganglion    61.6 Adult Crop    25.6 Adult Midgut    38.3 Adult Hindgut    33.9 Adult Malpighian Tubules    22.6 Adult Fat Body    22.6 Adult Salivary Gland    32.7 Adult Heart    26.5 Adult VirginFemale Spermatheca    22.1 Adult InseminatedFemale Spermatheca    23.5 Adult Ovary    95.7 Adult Testis    12.5 Adult Male Accessory Gland    29.8 Adult Carcass    27.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    69.9 Larval Midgut    23.7 Larval Hindgut    24.6 Larval Malpighian Tubules    29.4 Larval Fat Body    21.8 Larval Salivary Gland    37.4 Larval Trachea    47.55 Larval Carcass    31.85 Adult Head    28.3 Adult Eye    30.4 Adult Brain    54 Adult Thoracic-Abdominal Ganglion    61.6 Adult Crop    25.6 Adult Midgut    38.3 Adult Hindgut    33.9 Adult Malpighian Tubules    22.6 Adult Fat Body    22.6 Adult Salivary Gland    32.7 Adult Heart    26.5 Adult VirginFemale Spermatheca    22.1 Adult InseminatedFemale Spermatheca    23.5 Adult Ovary    95.7 Adult Testis    12.5 Adult Male Accessory Gland    29.8 Adult Carcass    27.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    69.9 Larval Midgut    23.7 Larval Hindgut    24.6 Larval Malpighian Tubules    29.4 Larval Fat Body    21.8 Larval Salivary Gland    37.4 Larval Trachea    47.55 Larval Carcass    31.85 Adult Head    28.3 Adult Eye    30.4 Adult Brain    54 Adult Thoracic-Abdominal Ganglion    61.6 Adult Crop    25.6 Adult Midgut    38.3 Adult Hindgut    33.9 Adult Malpighian Tubules    22.6 Adult Fat Body    22.6 Adult Salivary Gland    32.7 Adult Heart    26.5 Adult VirginFemale Spermatheca    22.1 Adult InseminatedFemale Spermatheca    23.5 Adult Ovary    95.7 Adult Testis    12.5 Adult Male Accessory Gland    29.8 Adult Carcass    27.5 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    69.9 Larval Midgut    23.7 Larval Hindgut    24.6 Larval Malpighian Tubules    29.4 Larval Fat Body    21.8 Larval Salivary Gland    37.4 Larval Trachea    47.55 Larval Carcass    31.85 Adult Head    28.3 Adult Eye    30.4 Adult Brain    54 Adult Thoracic-Abdominal Ganglion    61.6 Adult Crop    25.6 Adult Midgut    38.3 Adult Hindgut    33.9 Adult Malpighian Tubules    22.6 Adult Fat Body    22.6 Adult Salivary Gland    32.7 Adult Heart    26.5 Adult VirginFemale Spermatheca    22.1 Adult InseminatedFemale Spermatheca    23.5 Adult Ovary    95.7 Adult Testis    12.5 Adult Male Accessory Gland    29.8 Adult Carcass    27.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    69.9 Larval Midgut    23.7 Larval Hindgut    24.6 Larval Malpighian Tubules    29.4 Larval Fat Body    21.8 Larval Salivary Gland    37.4 Larval Trachea    47.55 Larval Carcass    31.85 Adult Head    28.3 Adult Eye    30.4 Adult Brain    54 Adult Thoracic-Abdominal Ganglion    61.6 Adult Crop    25.6 Adult Midgut    38.3 Adult Hindgut    33.9 Adult Malpighian Tubules    22.6 Adult Fat Body    22.6 Adult Salivary Gland    32.7 Adult Heart    26.5 Adult VirginFemale Spermatheca    22.1 Adult InseminatedFemale Spermatheca    23.5 Adult Ovary    95.7 Adult Testis    12.5 Adult Male Accessory Gland    29.8 Adult Carcass    27.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    69.9 Larval Midgut    23.7 Larval Hindgut    24.6 Larval Malpighian Tubules    29.4 Larval Fat Body    21.8 Larval Salivary Gland    37.4 Larval Trachea    47.55 Larval Carcass    31.85 Adult Head    28.3 Adult Eye    30.4 Adult Brain    54 Adult Thoracic-Abdominal Ganglion    61.6 Adult Crop    25.6 Adult Midgut    38.3 Adult Hindgut    33.9 Adult Malpighian Tubules    22.6 Adult Fat Body    22.6 Adult Salivary Gland    32.7 Adult Heart    26.5 Adult VirginFemale Spermatheca    22.1 Adult InseminatedFemale Spermatheca    23.5 Adult Ovary    95.7 Adult Testis    12.5 Adult Male Accessory Gland    29.8 Adult Carcass    27.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    28.3   NA  Eye    30.4   NA  Brain    54   69.9  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    61.6   NA  Crop    25.6   23.7  Midgut    38.3   24.6  Hindgut    33.9   29.4  Malpighian Tubules    no informative data   no informative data  Fat Body    no informative data   37.4  Salivary Gland    no informative data   NA  Heart    26.5   47.55  Trachea    NA   NA  VirginFemale Spermatheca    no informative data   NA  InseminatedFemale Spermatheca    no informative data   NA  Ovary    95.7   NA  Testis    no informative data   NA  Male Accessory Gland    29.8   31.85  Carcass    no informative data FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3    4 central nervous system, pupae P8    2 head, virgin 1-day female    2 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    6 ovary, mated 4-day female    8 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3    4 central nervous system, pupae P8    2 head, virgin 1-day female    2 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    6 ovary, mated 4-day female    8 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3    4 central nervous system, pupae P8    2 head, virgin 1-day female    2 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    6 ovary, mated 4-day female    8 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3    4 central nervous system, pupae P8    2 head, virgin 1-day female    2 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    6 ovary, mated 4-day female    8 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3    4 central nervous system, pupae P8    2 head, virgin 1-day female    2 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    6 ovary, mated 4-day female    8 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3    4 central nervous system, pupae P8    2 head, virgin 1-day female    2 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    6 ovary, mated 4-day female    8 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3    4 central nervous system, pupae P8    2 head, virgin 1-day female    2 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    6 ovary, mated 4-day female    8 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3    4 central nervous system, pupae P8    2 head, virgin 1-day female    2 head, virgin 4-day female    1 head, virgin 20-day female    2 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    2 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    2 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    3 fat body, pupae P8    4 carcass, larvae L3 wandering    3 carcass, 1-day adult    1 carcass, 4-day adult    1 carcass, 20-day adult    1 ovary, virgin 4-day female    6 ovary, mated 4-day female    8 testis, mated 4-day male    3 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    12 embryo 04-06hr    16 embryo 06-08hr    10 embryo 08-10hr    8 embryo 10-12hr    8 embryo 12-14hr    4 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    3 larva L1    6 larva L2    5 larva L3 12hr old    4 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    6 white prepupae 12hr    6 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    4 adult female 01day    12 adult female 05day    15 adult female 30day    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    12 embryo 04-06hr    16 embryo 06-08hr    10 embryo 08-10hr    8 embryo 10-12hr    8 embryo 12-14hr    4 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    3 larva L1    6 larva L2    5 larva L3 12hr old    4 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    6 white prepupae 12hr    6 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    4 adult female 01day    12 adult female 05day    15 adult female 30day    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    12 embryo 04-06hr    16 embryo 06-08hr    10 embryo 08-10hr    8 embryo 10-12hr    8 embryo 12-14hr    4 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    3 larva L1    6 larva L2    5 larva L3 12hr old    4 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    6 white prepupae 12hr    6 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    4 adult female 01day    12 adult female 05day    15 adult female 30day    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    12 embryo 04-06hr    16 embryo 06-08hr    10 embryo 08-10hr    8 embryo 10-12hr    8 embryo 12-14hr    4 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    3 larva L1    6 larva L2    5 larva L3 12hr old    4 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    6 white prepupae 12hr    6 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    4 adult female 01day    12 adult female 05day    15 adult female 30day    16 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    12 embryo 04-06hr    16 embryo 06-08hr    10 embryo 08-10hr    8 embryo 10-12hr    8 embryo 12-14hr    4 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    3 larva L1    6 larva L2    5 larva L3 12hr old    4 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    6 white prepupae 12hr    6 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    4 adult female 01day    12 adult female 05day    15 adult female 30day    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    12 embryo 04-06hr    16 embryo 06-08hr    10 embryo 08-10hr    8 embryo 10-12hr    8 embryo 12-14hr    4 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    3 larva L1    6 larva L2    5 larva L3 12hr old    4 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    6 white prepupae 12hr    6 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    4 adult female 01day    12 adult female 05day    15 adult female 30day    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    12 embryo 04-06hr    16 embryo 06-08hr    10 embryo 08-10hr    8 embryo 10-12hr    8 embryo 12-14hr    4 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    3 larva L1    6 larva L2    5 larva L3 12hr old    4 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    6 white prepupae 12hr    6 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    4 adult female 01day    12 adult female 05day    15 adult female 30day    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    12 embryo 04-06hr    16 embryo 06-08hr    10 embryo 08-10hr    8 embryo 10-12hr    8 embryo 12-14hr    4 embryo 14-16hr    4 embryo 16-18hr    3 embryo 18-20hr    3 embryo 20-22hr    3 embryo 22-24hr    3 larva L1    6 larva L2    5 larva L3 12hr old    4 larva L3 puffstage 1-2    4 larva L3 puffstage 3-6    5 larva L3 puffstage 7-9    5 white prepupae new    6 white prepupae 12hr    6 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    3 pupae 4d postWPP    3 adult male 01day    3 adult male 05day    3 adult male 30day    4 adult female 01day    12 adult female 05day    15 adult female 30day    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    15 embryonic 1182-4H    8 embryonic GM2    8 embryonic Kc167    25 embryonic S1    11 embryonic S3    10 leg disc CME L1    13 wing disc CME-W2    9 wing disc ML-DmD8    9 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    18 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    5 ovary fGS/OSS    10 ovary OSC    6 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    15 embryonic 1182-4H    8 embryonic GM2    8 embryonic Kc167    25 embryonic S1    11 embryonic S3    10 leg disc CME L1    13 wing disc CME-W2    9 wing disc ML-DmD8    9 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    18 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    5 ovary fGS/OSS    10 ovary OSC    6 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    15 embryonic 1182-4H    8 embryonic GM2    8 embryonic Kc167    25 embryonic S1    11 embryonic S3    10 leg disc CME L1    13 wing disc CME-W2    9 wing disc ML-DmD8    9 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    18 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    5 ovary fGS/OSS    10 ovary OSC    6 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    15 embryonic 1182-4H    8 embryonic GM2    8 embryonic Kc167    25 embryonic S1    11 embryonic S3    10 leg disc CME L1    13 wing disc CME-W2    9 wing disc ML-DmD8    9 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    18 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    5 ovary fGS/OSS    10 ovary OSC    6 ovary OSS    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    15 embryonic 1182-4H    8 embryonic GM2    8 embryonic Kc167    25 embryonic S1    11 embryonic S3    10 leg disc CME L1    13 wing disc CME-W2    9 wing disc ML-DmD8    9 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    18 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    5 ovary fGS/OSS    10 ovary OSC    6 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    15 embryonic 1182-4H    8 embryonic GM2    8 embryonic Kc167    25 embryonic S1    11 embryonic S3    10 leg disc CME L1    13 wing disc CME-W2    9 wing disc ML-DmD8    9 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    18 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    5 ovary fGS/OSS    10 ovary OSC    6 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    15 embryonic 1182-4H    8 embryonic GM2    8 embryonic Kc167    25 embryonic S1    11 embryonic S3    10 leg disc CME L1    13 wing disc CME-W2    9 wing disc ML-DmD8    9 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    18 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    5 ovary fGS/OSS    10 ovary OSC    6 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    13 Schneider line 2 Sg4    15 embryonic 1182-4H    8 embryonic GM2    8 embryonic Kc167    25 embryonic S1    11 embryonic S3    10 leg disc CME L1    13 wing disc CME-W2    9 wing disc ML-DmD8    9 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    13 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    20 antennal disc ML-DmD20-c5    18 mixed discs ML-DmD4-c1    12 CNS ML-DmBG1-c1    9 CNS ML-DmBG2-c2    11 tumorous blood cells mbn2    5 ovary fGS/OSS    10 ovary OSC    6 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    5 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    5 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    5 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    5 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    5 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    5 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    5 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    3 cold shock, 4-day adult    2 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    4 Cadmium 100 mM 48 hrs, 4-day adult    5 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    3 Ethanol 2.5% 3 hrs, larvae L3    7 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    9 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    5 Paraquat 10 mM 48 hrs, 4-day adult    6 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_13 mE1_20_mRNA_expression_cluster_05
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033315 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8734-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 β3GalTIIGD1876 Other Phenotypes Allele visible, with Scer\GAL4ap-md544 β3GalTIIdsRNA.Scer\UAS visible, with Scer\GAL4GMR.PS β3GalTIIdsRNA.Scer\UAS Phenotype manifest in Allele eye, with Scer\GAL4GMR.PS β3GalTIIdsRNA.Scer\UAS interommatidial bristle, with Scer\GAL4GMR.PS β3GalTIIdsRNA.Scer\UAS wing, with Scer\GAL4ap-md544 β3GalTIIdsRNA.Scer\UAS
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of β3GalTII Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of β3GalTII Class Mutagen Stocks Known lesion β3GalTIIGD1876 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes β3GalTIIJF01134 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes β3GalTIIKK102749 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes β3GalTIIdsRNA.Scer\UAS in vitro construct - regulatory fusion in vitro construct - RNAi 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel8047 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 3 terms )
Molecular Function
CV term Evidence References
galactosyltransferase activity inferred from direct assay (Ueyama et al., 2008)
Biological Process
CV term Evidence References
glycosaminoglycan biosynthetic process inferred from genetic interaction with β4GalT7 (Ueyama et al., 2008) heparan sulfate proteoglycan biosynthetic process inferred from genetic interaction with Ext2 (Ueyama et al., 2008) inferred from genetic interaction with Hs3st-B (Ueyama et al., 2008) inferred from genetic interaction with Hs6st (Ueyama et al., 2008) inferred from genetic interaction with oxt (Ueyama et al., 2008) inferred from genetic interaction with Papss (Ueyama et al., 2008) inferred from genetic interaction with ttv (Ueyama et al., 2008) inferred from mutant phenotype (Ueyama et al., 2008)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term Evidence References
galactosyltransferase activity inferred from sequence or structural similarity with EMBL:AY050570 AND inferred from sequence or structural similarity with NCBI:NP_536693 (FlyBase, 1992-) non-traceable author statement (Wilson, 2002)
Biological Process
CV term Evidence References
chondroitin sulfate biosynthetic process non-traceable author statement (Wilson, 2002) heparan sulfate proteoglycan biosynthetic process non-traceable author statement (Wilson, 2002) protein glycosylation inferred from electronic annotation with InterPro:IPR002659 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
membrane inferred from electronic annotation with InterPro:IPR002659 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions β3GalTII allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0033315
Orthologs
OrthoDB Orthologs (39) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6DZ2F4 Dipteran inclusive ortholog search EOG6M9210 Insect inclusive ortholog search EOG6SF82N Arthropod inclusive ortholog search EOG61G1KW Metazoa inclusive ortholog search EOG6Q8HRM
Orthologs in Drosophila Species (EOG6DZ2F4)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\β3GalTII     Drosophila sechellia   Dsec\β3galt6 Y   Drosophila erecta   Dere\β3galt6 Y   Drosophila yakuba   Dyak\β3galt6 Y   Drosophila ananassae   Dana\GF19742 Y   Drosophila pseudoobscura pseudoobscura   Dpse\beta3galt6 Y   Drosophila persimilis   Dper\β3galt6 Y   Drosophila willistoni   Dwil\GK24661 Y   Drosophila virilis   Dvir\GJ15057 Y   Drosophila mojavensis   Dmoj\GI17485 Y   Drosophila grimshawi   Dgri\GH13293 Y
Orthologs in non-Drosophila Dipterans (EOG6M9210)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL001152   Anopheles gambiae Malaria mosquito  Agam\AGAP009175   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ010407
Orthologs in non-Dipteran Insects (EOG6SF82N)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB40398   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG013828   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH19763   Atta cephalotes Leafcutter ant  Acep\ACEP15454   Camponotus floridanus Florida carpenter ant  Cflo\CFLO13099   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL21636   Linepithema humile Argentine ant  Lhum\LH15209   Pogonomyrmex barbatus Red harvester ant  Pbar\PB18131   Solenopsis invicta Red fire ant  Sinv\SINV13909   Acyrthosiphon pisum Pea aphid  Apim\ACYPI062570   Acyrthosiphon pisum Pea aphid  Apim\ACYPI009488   Bombyx mori Silkmoth  Bmor\BGIBMGA007765   Pediculus humanus Human body louse  Phum\PHUM361650   Tribolium castaneum Red flour beetle  Tcas\TC014260
Orthologs in non-Insect Arthropods (EOG61G1KW)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\SLC28A3   Ixodes scapularis Deer tick  Isca\ISCW012863
Orthologs in non-Arthropod Metazoa (EOG6Q8HRM)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\sqv-2   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_026271gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_020928gn   Danio rerio Zebrafish  Drer\b3galt6   Xenopus tropicalis Western clawed frog  Xtro\b3galt6   Gallus gallus Domestic chicken  Ggal\B3GALT6   Mus musculus House mouse  Mmus\B3galt6   Rattus norvegicus Norway rat  Rnor\B3galt6   Homo sapiens Human  Hsap\B3GALT6
Human Orthologs (1)
Gene OMIM HGNC Hsap\B3GALT6
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila sechellia Dsec\β3galt6 Drosophila erecta Dere\β3galt6 Drosophila yakuba Dyak\β3galt6 Drosophila ananassae Dana\GF19742 Drosophila pseudoobscura pseudoobscura Dpse\beta3galt6 Drosophila persimilis Dper\β3galt6 Drosophila willistoni Dwil\GK24661 Drosophila virilis Dvir\GJ15057 Drosophila mojavensis Dmoj\GI17485 Drosophila grimshawi Dgri\GH13293
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	31562 y1 v1; P{TRiP.JF01134}attP2
VDRC	v106134 P{KK102749}VIE-260B v7949 w1118; P{GD1876}v7949/TM3
Genomic Clones ( 1 )
	BACR21H10 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 6 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	IP11266 IP11466 IP11566
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	CK01.128C.F8 EK099706 EK174106
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0033315 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35848
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: β3GalTII CG8734 (Ueyama et al., 2008)
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_136555 RefSeq (Proteins) • NP_610399 DDBJ / EMBL / GenBank • AAF59065 Entrez Gene - A searchable database of RefSeq genes. • 35848 UniProtKB/TrEMBL • A1Z7G9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Glycosyl transferase, family 31 (IPR002659)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0033315 DRSC - Results from RNAi screens. • FBgn0033315 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033315 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8734-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0033315 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35848 modMine - Data generated by the modENCODE project. • FBgn0033315
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	CG8734 (Ueyama et al., 2008, Keleman et al., 2009.8.5, Ni et al., 2008) dβ3GalTII (Ueyama et al., 2008) GalTII (Bornemann et al., 2008) β3GalTII
Name Synonym	CG8734   Galactosyltransferase II (Bornemann et al., 2008)
Secondary FlyBase IDs
References ( 21 )
Generate a list of	All references relating to this gene ( 21 )
List References by type	Research paper  ( 4 ) Supplementary material  ( 4 ) Review  ( 1 ) Personal communication to FlyBase  ( 4 ) FlyBase analysis  ( 1 ) Curated genome annotation  ( 1 ) DNA/RNA sequence record  ( 6 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...