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Gene Dmel\CG1902

General Information
Symbol	Dmel\CG1902	Species	D. melanogaster
Name		Annotation symbol	CG1902
Feature type	protein_coding_gene	FlyBase ID	FBgn0033434
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	45F6-45F6	Sequence location	2R:5,481,588..5,493,129 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG1902 (FBgn0033434). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Cellular retinaldehyde-binding/triple function, C-terminal; Phosphatidylinositol transfer protein-like, N-terminal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed during late larval stages, during late pupal stages, in adult male stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, larval trachea, adult male reproductive system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, adult female reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1628929_s_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG1902. Gene sequence location is 2R:5481588..5493129.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features HFA06798 BKN26356
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 45F6-45F6   Limits computationally determined from genome sequence between P{lacW}l(2)k09501k09501 and P{PZ}Mmp202353&P{PZ}Uba105642
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG1902 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG1902-RA FBtr0088531  NM_136663   1711   312 CG1902-RC FBtr0088532  NM_165689   1780   312
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG1902-PA   FBpp0087614   35.8   312   6.12     NP_610507   AAF58914 CG1902-PC   FBpp0087615   35.8   312   6.12     NP_724815   AAM71080
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Cellular retinaldehyde-binding/triple function, C-terminal (IPR001251) Phosphatidylinositol transfer protein-like, N-terminal (IPR011074)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA201137   AA263542   AA441430   AE013599 AAF58914   AE013599 AAM71080   AI135455   AI532481   AI947038   AW944339   AY061588 AAL29136   BE662170   BG639658   BH759583   BI163078   BI171168   BI212418   BI214194   BI233013   BI241969   BI364464   BI364843   BI365293   CO155508   CO191892   CO193834   CO289518   CO296470   CO303092   CO303595   CO304702   CO342549   CZ489939   CZ489940   EC081647   EC217515   EC226105   EC236211   EC257254   EC267497
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q7K1M4
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0033434    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0033434 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed during late larval stages, during late pupal stages, in adult male stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0033434 expression level Developmental Stage   Expression Level embryo 00-02hr    2038 embryo 02-04hr    2639 embryo 04-06hr    3172 embryo 06-08hr    3415 embryo 08-10hr    2959 embryo 10-12hr    2741 embryo 12-14hr    3027 embryo 14-16hr    3529 embryo 16-18hr    3584 embryo 18-20hr    2306 embryo 20-22hr    2759 embryo 22-24hr    3231 larva L1    2333 larva L2    3262 larva L3 12hr old    1881 larva L3 puffstage 1-2    2377 larva L3 puffstage 3-6    2791 larva L3 puffstage 7-9    4016 white prepupae new    3925 white prepupae 12hr    3256 white prepupae 24hr    3770 pupae 2d postWPP    5013 pupae 3d postWPP    3389 pupae 4d postWPP    2569 adult male 01day    3899 adult male 05day    4403 adult male 30day    4532 adult female 01day    1688 adult female 05day    1707 adult female 30day    1750 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2038) embryo 02-04hr  (2639) embryo 04-06hr  (3172) embryo 06-08hr  (3415) embryo 08-10hr  (2959) embryo 10-12hr  (2741) embryo 12-14hr  (3027) embryo 14-16hr  (3529) embryo 16-18hr  (3584) embryo 18-20hr  (2306) embryo 20-22hr  (2759) embryo 22-24hr  (3231) larva L1  (2333) larva L2  (3262) larva L3 12hr old  (1881) larva L3 puffstage 1-2  (2377) larva L3 puffstage 3-6  (2791) larva L3 puffstage 7-9  (4016) white prepupae new  (3925) white prepupae 12hr  (3256) white prepupae 24hr  (3770) pupae 2d postWPP  (5013) pupae 3d postWPP  (3389) pupae 4d postWPP  (2569) adult male 01day  (3899) adult male 05day  (4403) adult male 30day  (4532) adult female 01day  (1688) adult female 05day  (1707) adult female 30day  (1750) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2038) embryo 02-04hr  (2639) embryo 04-06hr  (3172) embryo 06-08hr  (3415) embryo 08-10hr  (2959) embryo 10-12hr  (2741) embryo 12-14hr  (3027) embryo 14-16hr  (3529) embryo 16-18hr  (3584) embryo 18-20hr  (2306) embryo 20-22hr  (2759) embryo 22-24hr  (3231) larva L1  (2333) larva L2  (3262) larva L3 12hr old  (1881) larva L3 puffstage 1-2  (2377) larva L3 puffstage 3-6  (2791) larva L3 puffstage 7-9  (4016) white prepupae new  (3925) white prepupae 12hr  (3256) white prepupae 24hr  (3770) pupae 2d postWPP  (5013) pupae 3d postWPP  (3389) pupae 4d postWPP  (2569) adult male 01day  (3899) adult male 05day  (4403) adult male 30day  (4532) adult female 01day  (1688) adult female 05day  (1707) adult female 30day  (1750) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2038 embryo 02-04hr    2639 embryo 04-06hr    3172 embryo 06-08hr    3415 embryo 08-10hr    2959 embryo 10-12hr    2741 embryo 12-14hr    3027 embryo 14-16hr    3529 embryo 16-18hr    3584 embryo 18-20hr    2306 embryo 20-22hr    2759 embryo 22-24hr    3231 larva L1    2333 larva L2    3262 larva L3 12hr old    1881 larva L3 puffstage 1-2    2377 larva L3 puffstage 3-6    2791 larva L3 puffstage 7-9    4016 white prepupae new    3925 white prepupae 12hr    3256 white prepupae 24hr    3770 pupae 2d postWPP    5013 pupae 3d postWPP    3389 pupae 4d postWPP    2569 adult male 01day    3899 adult male 05day    4403 adult male 30day    4532 adult female 01day    1688 adult female 05day    1707 adult female 30day    1750 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2038 embryo 02-04hr    2639 embryo 04-06hr    3172 embryo 06-08hr    3415 embryo 08-10hr    2959 embryo 10-12hr    2741 embryo 12-14hr    3027 embryo 14-16hr    3529 embryo 16-18hr    3584 embryo 18-20hr    2306 embryo 20-22hr    2759 embryo 22-24hr    3231 larva L1    2333 larva L2    3262 larva L3 12hr old    1881 larva L3 puffstage 1-2    2377 larva L3 puffstage 3-6    2791 larva L3 puffstage 7-9    4016 white prepupae new    3925 white prepupae 12hr    3256 white prepupae 24hr    3770 pupae 2d postWPP    5013 pupae 3d postWPP    3389 pupae 4d postWPP    2569 adult male 01day    3899 adult male 05day    4403 adult male 30day    4532 adult female 01day    1688 adult female 05day    1707 adult female 30day    1750 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0033434 expression level Developmental Stage   Expression Level embryo 00-02hr    2038 embryo 02-04hr    2639 embryo 04-06hr    3172 embryo 06-08hr    3415 embryo 08-10hr    2959 embryo 10-12hr    2741 embryo 12-14hr    3027 embryo 14-16hr    3529 embryo 16-18hr    3584 embryo 18-20hr    2306 embryo 20-22hr    2759 embryo 22-24hr    3231 larva L1    2333 larva L2    3262 larva L3 12hr old    1881 larva L3 puffstage 1-2    2377 larva L3 puffstage 3-6    2791 larva L3 puffstage 7-9    4016 white prepupae new    3925 white prepupae 12hr    3256 white prepupae 24hr    3770 pupae 2d postWPP    5013 pupae 3d postWPP    3389 pupae 4d postWPP    2569 adult male 01day    3899 adult male 05day    4403 adult male 30day    4532 adult female 01day    1688 adult female 05day    1707 adult female 30day    1750 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2038) embryo 02-04hr  (2639) embryo 04-06hr  (3172) embryo 06-08hr  (3415) embryo 08-10hr  (2959) embryo 10-12hr  (2741) embryo 12-14hr  (3027) embryo 14-16hr  (3529) embryo 16-18hr  (3584) embryo 18-20hr  (2306) embryo 20-22hr  (2759) embryo 22-24hr  (3231) larva L1  (2333) larva L2  (3262) larva L3 12hr old  (1881) larva L3 puffstage 1-2  (2377) larva L3 puffstage 3-6  (2791) larva L3 puffstage 7-9  (4016) white prepupae new  (3925) white prepupae 12hr  (3256) white prepupae 24hr  (3770) pupae 2d postWPP  (5013) pupae 3d postWPP  (3389) pupae 4d postWPP  (2569) adult male 01day  (3899) adult male 05day  (4403) adult male 30day  (4532) adult female 01day  (1688) adult female 05day  (1707) adult female 30day  (1750) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  2038 embryo 02-04hr  (2639) embryo 04-06hr  (3172) embryo 06-08hr  (3415) embryo 08-10hr  (2959) embryo 10-12hr  (2741) embryo 12-14hr  (3027) embryo 14-16hr  (3529) embryo 16-18hr  (3584) embryo 18-20hr  2306 embryo 20-22hr  (2759) embryo 22-24hr  (3231) larva L1  2333 larva L2  (3262) larva L3 12hr old  1881 larva L3 puffstage 1-2  2377 larva L3 puffstage 3-6  (2791) larva L3 puffstage 7-9  (4016) white prepupae new  (3925) white prepupae 12hr  (3256) white prepupae 24hr  (3770) pupae 2d postWPP  (5013) pupae 3d postWPP  (3389) pupae 4d postWPP  (2569) adult male 01day  (3899) adult male 05day  (4403) adult male 30day  (4532) adult female 01day  1688 adult female 05day  1707 adult female 30day  1750 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2038 embryo 02-04hr    2639 embryo 04-06hr    3172 embryo 06-08hr    3415 embryo 08-10hr    2959 embryo 10-12hr    2741 embryo 12-14hr    3027 embryo 14-16hr    3529 embryo 16-18hr    3584 embryo 18-20hr    2306 embryo 20-22hr    2759 embryo 22-24hr    3231 larva L1    2333 larva L2    3262 larva L3 12hr old    1881 larva L3 puffstage 1-2    2377 larva L3 puffstage 3-6    2791 larva L3 puffstage 7-9    4016 white prepupae new    3925 white prepupae 12hr    3256 white prepupae 24hr    3770 pupae 2d postWPP    5013 pupae 3d postWPP    3389 pupae 4d postWPP    2569 adult male 01day    3899 adult male 05day    4403 adult male 30day    4532 adult female 01day    1688 adult female 05day    1707 adult female 30day    1750 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2038 embryo 02-04hr    2639 embryo 04-06hr    3172 embryo 06-08hr    3415 embryo 08-10hr    2959 embryo 10-12hr    2741 embryo 12-14hr    3027 embryo 14-16hr    3529 embryo 16-18hr    3584 embryo 18-20hr    2306 embryo 20-22hr    2759 embryo 22-24hr    3231 larva L1    2333 larva L2    3262 larva L3 12hr old    1881 larva L3 puffstage 1-2    2377 larva L3 puffstage 3-6    2791 larva L3 puffstage 7-9    4016 white prepupae new    3925 white prepupae 12hr    3256 white prepupae 24hr    3770 pupae 2d postWPP    5013 pupae 3d postWPP    3389 pupae 4d postWPP    2569 adult male 01day    3899 adult male 05day    4403 adult male 30day    4532 adult female 01day    1688 adult female 05day    1707 adult female 30day    1750 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0033434    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0033434 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, larval trachea, adult male reproductive system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, adult female reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0033434 expression level Tissue   Expression Level Larval Central Nervous System    526.875 Larval Midgut    1087.6 Larval Hindgut    633 Larval Malpighian Tubules    521.9 Larval Fat Body    438.8 Larval Salivary Gland    350.3 Larval Trachea    585.375 Larval Carcass    495.7 Adult Head    355.8 Adult Eye    306.05 Adult Brain    645.3 Adult Thoracic-Abdominal Ganglion    558.7 Adult Crop    810.4 Adult Midgut    1598.4 Adult Hindgut    733.1 Adult Malpighian Tubules    209.3 Adult Fat Body    396.2 Adult Salivary Gland    337.1 Adult Heart    456.775 Adult VirginFemale Spermatheca    221.1 Adult InseminatedFemale Spermatheca    247 Adult Ovary    298.6 Adult Testis    747.7 Adult Male Accessory Gland    1244.2 Adult Carcass    302 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  526.875 Larval Midgut  (1087.6) Larval Hindgut  (633) Larval Malpighian Tubules  521.9 Larval Fat Body    438.8 Larval Salivary Gland    350.3 Larval Trachea  (585.375) Larval Carcass    495.7 Adult Head    355.8 Adult Eye    306.05 Adult Brain  (645.3) Adult Thoracic-Abdominal Ganglion  (558.7) Adult Crop  (810.4) Adult Midgut  (1598.4) Adult Hindgut  (733.1) Adult Malpighian Tubules    209.3 Adult Fat Body    396.2 Adult Salivary Gland    337.1 Adult Heart    456.775 Adult VirginFemale Spermatheca    221.1 Adult InseminatedFemale Spermatheca    247 Adult Ovary    298.6 Adult Testis  (747.7) Adult Male Accessory Gland  (1244.2) Adult Carcass    302 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    526.875 Larval Midgut  (1087.6) Larval Hindgut    633 Larval Malpighian Tubules    521.9 Larval Fat Body    438.8 Larval Salivary Gland    350.3 Larval Trachea    585.375 Larval Carcass    495.7 Adult Head    355.8 Adult Eye    306.05 Adult Brain    645.3 Adult Thoracic-Abdominal Ganglion    558.7 Adult Crop    810.4 Adult Midgut  (1598.4) Adult Hindgut    733.1 Adult Malpighian Tubules    209.3 Adult Fat Body    396.2 Adult Salivary Gland    337.1 Adult Heart    456.775 Adult VirginFemale Spermatheca    221.1 Adult InseminatedFemale Spermatheca    247 Adult Ovary    298.6 Adult Testis    747.7 Adult Male Accessory Gland  (1244.2) Adult Carcass    302 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    526.875 Larval Midgut    1087.6 Larval Hindgut    633 Larval Malpighian Tubules    521.9 Larval Fat Body    438.8 Larval Salivary Gland    350.3 Larval Trachea    585.375 Larval Carcass    495.7 Adult Head    355.8 Adult Eye    306.05 Adult Brain    645.3 Adult Thoracic-Abdominal Ganglion    558.7 Adult Crop    810.4 Adult Midgut    1598.4 Adult Hindgut    733.1 Adult Malpighian Tubules    209.3 Adult Fat Body    396.2 Adult Salivary Gland    337.1 Adult Heart    456.775 Adult VirginFemale Spermatheca    221.1 Adult InseminatedFemale Spermatheca    247 Adult Ovary    298.6 Adult Testis    747.7 Adult Male Accessory Gland    1244.2 Adult Carcass    302 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0033434 expression level Tissue   Expression Level Larval Central Nervous System    526.875 Larval Midgut    1087.6 Larval Hindgut    633 Larval Malpighian Tubules    521.9 Larval Fat Body    438.8 Larval Salivary Gland    350.3 Larval Trachea    585.375 Larval Carcass    495.7 Adult Head    355.8 Adult Eye    306.05 Adult Brain    645.3 Adult Thoracic-Abdominal Ganglion    558.7 Adult Crop    810.4 Adult Midgut    1598.4 Adult Hindgut    733.1 Adult Malpighian Tubules    209.3 Adult Fat Body    396.2 Adult Salivary Gland    337.1 Adult Heart    456.775 Adult VirginFemale Spermatheca    221.1 Adult InseminatedFemale Spermatheca    247 Adult Ovary    298.6 Adult Testis    747.7 Adult Male Accessory Gland    1244.2 Adult Carcass    302 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  526.875 Larval Midgut  (1087.6) Larval Hindgut  633 Larval Malpighian Tubules  521.9 Larval Fat Body    438.8 Larval Salivary Gland    350.3 Larval Trachea  585.375 Larval Carcass    495.7 Adult Head    355.8 Adult Eye    306.05 Adult Brain  645.3 Adult Thoracic-Abdominal Ganglion  558.7 Adult Crop  810.4 Adult Midgut  (1598.4) Adult Hindgut  733.1 Adult Malpighian Tubules    209.3 Adult Fat Body    396.2 Adult Salivary Gland    337.1 Adult Heart    456.775 Adult VirginFemale Spermatheca    221.1 Adult InseminatedFemale Spermatheca    247 Adult Ovary    298.6 Adult Testis  747.7 Adult Male Accessory Gland  (1244.2) Adult Carcass    302 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    526.875 Larval Midgut  1087.6 Larval Hindgut    633 Larval Malpighian Tubules    521.9 Larval Fat Body    438.8 Larval Salivary Gland    350.3 Larval Trachea    585.375 Larval Carcass    495.7 Adult Head    355.8 Adult Eye    306.05 Adult Brain    645.3 Adult Thoracic-Abdominal Ganglion    558.7 Adult Crop    810.4 Adult Midgut  1598.4 Adult Hindgut    733.1 Adult Malpighian Tubules    209.3 Adult Fat Body    396.2 Adult Salivary Gland    337.1 Adult Heart    456.775 Adult VirginFemale Spermatheca    221.1 Adult InseminatedFemale Spermatheca    247 Adult Ovary    298.6 Adult Testis    747.7 Adult Male Accessory Gland  1244.2 Adult Carcass    302 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    526.875 Larval Midgut    1087.6 Larval Hindgut    633 Larval Malpighian Tubules    521.9 Larval Fat Body    438.8 Larval Salivary Gland    350.3 Larval Trachea    585.375 Larval Carcass    495.7 Adult Head    355.8 Adult Eye    306.05 Adult Brain    645.3 Adult Thoracic-Abdominal Ganglion    558.7 Adult Crop    810.4 Adult Midgut    1598.4 Adult Hindgut    733.1 Adult Malpighian Tubules    209.3 Adult Fat Body    396.2 Adult Salivary Gland    337.1 Adult Heart    456.775 Adult VirginFemale Spermatheca    221.1 Adult InseminatedFemale Spermatheca    247 Adult Ovary    298.6 Adult Testis    747.7 Adult Male Accessory Gland    1244.2 Adult Carcass    302 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    355.8   NA  Eye    306.05   NA  Brain    645.3   526.875  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    558.7   NA  Crop    810.4   1087.6  Midgut    1598.4   633  Hindgut    733.1   521.9  Malpighian Tubules    209.3   438.8  Fat Body    396.2   350.3  Salivary Gland    337.1   NA  Heart    456.775   585.375  Trachea    NA   NA  VirginFemale Spermatheca    221.1   NA  InseminatedFemale Spermatheca    247   NA  Ovary    298.6   NA  Testis    747.7   NA  Male Accessory Gland    1244.2   495.7  Carcass    302 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_24
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033434 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1902-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG1902c04990 viable, with Scer\GAL4pnr-MD237 CG1902GD8825 Sterility Allele fertile CG1902c04990 Phenotype manifest in Allele
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of CG1902 Class Mutagen Stocks Known lesion CG1902c04990 piggyBac transposase 1 -- CG1902f07153 piggyBac transposase 1 -- CG1902KG05186 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG1902 Class Mutagen Stocks Known lesion CG1902GD8825 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG1902KK106356 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel8049 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8825} NA P{KK106356} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{SUPor-P}CG1902KG05186 NA PBac{PB}closc04152 NA PBac{PB}closc04990 NA PBac{WH}CG1902f07153 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG1902 allele Gene References
External Data
Linkouts	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0033434 DroID - A comprehensive database of gene and protein interactions. • FBgn0033434 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 35993
Orthologs
Genome-wide drosophilid orthologs	Dana\GF12483 Dere\GG24093 Dgri\GH22935 Dmoj\GI18421 Dper\GL17150 Dpse\GA15120 Dsec\GM21141 Dsim\GD10670 Dvir\GJ21508 Dwil\GK15952 Dyak\GE19293
Curated drosophilid orthologs	Dpse\GA15120
Linkouts	OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0236643 FBgn0217954 FBgn0208629 FBgn0182437 FBgn0176022 FBgn0075145 FBgn0154754 FBgn0141160 FBgn0130392 FBgn0116232 FBgn0089520
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	13879 y1 w67c23; P{SUPor-P}CG1902KG05186 17684 w1118; PBac{PB}closc04990 CG1902c04990 CG30338c04990
Harvard	- PBac{WH}CG1902f07153
VDRC	v107600 P{KK106356}VIE-260B v32474 w1118 P{GD8825}v32474 v32475 w1118 P{GD8825}v32475
Genomic Clones ( 2 )
	BACR17M11 BACR48G21 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 31 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	SD04017
Other clones	DPiM_SD04017
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	LD03809 LD06681 LD16360 RE02387 RE12867 RE17511 RE19929 RE29279 RE39176 RE49573 RE50034 RE50555 SD04041
Other clones	80598 122496 214471.39 524939 bs27a11 CK01.12D.F4 CK01.90D.G9 EC32357 EC36872 EK071225 EK213755 EK240002 EK242202 EK245817 EN06220 EP15111
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0033434 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35993
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	Nonsense-mediated mRNA decay (NMD) down-regulates a distinct splice isoform(s) of this gene. (Hansen et al., 2009)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_136663 NM_165689 RefSeq (Proteins) • NP_610507 NP_724815 DDBJ / EMBL / GenBank • AAF58914 AAL29136 AAM71080 AI135455 AI532481 AI947038 AW944339 AY061588 BE662170 BH759583 CZ489939 CZ489940 Entrez Gene - A searchable database of RefSeq genes. • 35993 UniProtKB/TrEMBL • Q7K1M4
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Cellular retinaldehyde-binding/triple function, C-terminal (IPR001251) Phosphatidylinositol transfer protein-like, N-terminal (IPR011074)
Linkouts
	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0033434 DroID - A comprehensive database of gene and protein interactions. • FBgn0033434 DRSC - Results from RNAi screens. • FBgn0033434 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033434 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1902-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0033434 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35993 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 35993 modMine - Data generated by the modENCODE project. • FBgn0033434 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0236643 FBgn0217954 FBgn0208629 FBgn0182437 FBgn0176022 FBgn0075145 FBgn0154754 FBgn0141160 FBgn0130392 FBgn0116232 FBgn0089520
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG1902 (Svensson et al., 2007, Hansen et al., 2009, Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
References ( 15 )
Research paper	Hansen et al., 2009, PLoS Genet. 5(6): e1000525 Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila. [FBrf0208149] Svensson et al., 2007, Dev. Genes Evol. 217(9): 639--650 Organization and regulation of sex-specific thioredoxin encoding genes in the genus Drosophila. [FBrf0201263]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Oliver, 2001.8.16, File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). [FBrf0137492]
FlyBase analysis	FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. Genomic mapping of Exelixis insertion collection. [FBrf0184340] Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Curated genome annotation	Milshina, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126686]