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Gene Dmel\CG1599

General Information
Symbol	Dmel\CG1599	Species	D. melanogaster
Name		Annotation symbol	CG1599
Feature type	protein_coding_gene	FlyBase ID	FBgn0033452
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	46B4-46B4	Sequence location	2R:5,728,585..5,730,014 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG1599 (FBgn0033452). It is a protein_coding_gene from Drosophila melanogaster. It is reported to have molecular function: SNAP receptor activity. It is reported to be involved in the biological process: intracellular protein transport. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Longin; Longin-like; Synaptobrevin. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed during late larval stages, during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult crop, larval/adult midgut, larval Malpighian tubules, larval fat body, larval/adult salivary gland, adult female reproductive system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval/adult central nervous system, larval/adult hindgut, adult Malpighian tubules, adult heart, adult fat body, larval trachea, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1634598_a_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG1599. Gene sequence location is 2R:5728585..5730014.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10	Controlled Vocabulary Terms day 42 of adulthood day 41 of adulthood day 30 of adulthood day 49 of adulthood day 17 of adulthood day 45 of adulthood day 8 of adulthood day 26 of adulthood day 21 of adulthood day 13 of adulthood day 25 of adulthood day 20 of adulthood day 22 of adulthood day 39 of adulthood day 7 of adulthood day 36 of adulthood day 11 of adulthood day 37 of adulthood day 27 of adulthood day 18 of adulthood day 19 of adulthood day 28 of adulthood day 9 of adulthood day 29 of adulthood adult heart day 40 of adulthood day 16 of adulthood day 24 of adulthood day 15 of adulthood day 33 of adulthood day 43 of adulthood day 47 of adulthood day 38 of adulthood day 32 of adulthood day 48 of adulthood day 23 of adulthood day 35 of adulthood day 12 of adulthood day 10 of adulthood day 31 of adulthood day 34 of adulthood day 44 of adulthood day 14 of adulthood day 46 of adulthood
FB2012_01	Sequence features BKN27576 HFA06599
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 46B4-46B4   Limits computationally determined from genome sequence between P{lacW}l(2)k05420k05420 and P{lacW}l(2)k07803k07803&P{lacW}l(2)k08816k08816
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG1599 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG1599-RA FBtr0089394  NM_136680   1101   218
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG1599-PA   FBpp0088416   24.9   218   8.69     NP_610524   AAF58892
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Synaptobrevin (IPR001388) Longin (IPR010908) Longin-like (IPR011012)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA263341   AA696710   AE013599 AAF58892   AY071695 AAL49317   BI164586   BI168870   BI171757   BI229732   BI234572   BI355058   BI357934   BI371061   BI484417   BI571561   BI610373   BI633620   BI638200   BI641247   BP545246   BP545247   CK134888   CL528167   CO184927   CO185211   CO186729   CO192508   CO283089   CO314488   CO322395   CO323508   EC057425   EC085401   EC085974   EC086082   EC087960   EC210980   EC214203   EC249247   ES696216   EV586723   EV587543   EV590103   EV591097
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q7JYX5
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0033452    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0033452 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed during late larval stages, during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0033452 expression level Developmental Stage   Expression Level embryo 00-02hr    7260 embryo 02-04hr    5712 embryo 04-06hr    4107 embryo 06-08hr    4842 embryo 08-10hr    5525 embryo 10-12hr    5198 embryo 12-14hr    3365 embryo 14-16hr    2758 embryo 16-18hr    2541 embryo 18-20hr    1562 embryo 20-22hr    1231 embryo 22-24hr    1532 larva L1    1293 larva L2    1714 larva L3 12hr old    1903 larva L3 puffstage 1-2    5137 larva L3 puffstage 3-6    7283 larva L3 puffstage 7-9    11476 white prepupae new    12178 white prepupae 12hr    9265 white prepupae 24hr    6197 pupae 2d postWPP    4850 pupae 3d postWPP    3352 pupae 4d postWPP    2649 adult male 01day    3021 adult male 05day    3278 adult male 30day    3699 adult female 01day    4115 adult female 05day    5235 adult female 30day    5570 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (7260) embryo 02-04hr  (5712) embryo 04-06hr  (4107) embryo 06-08hr  (4842) embryo 08-10hr  (5525) embryo 10-12hr  (5198) embryo 12-14hr  (3365) embryo 14-16hr  (2758) embryo 16-18hr  (2541) embryo 18-20hr  (1562) embryo 20-22hr  (1231) embryo 22-24hr  (1532) larva L1  (1293) larva L2  (1714) larva L3 12hr old  (1903) larva L3 puffstage 1-2  (5137) larva L3 puffstage 3-6  (7283) larva L3 puffstage 7-9  (11476) white prepupae new  (12178) white prepupae 12hr  (9265) white prepupae 24hr  (6197) pupae 2d postWPP  (4850) pupae 3d postWPP  (3352) pupae 4d postWPP  (2649) adult male 01day  (3021) adult male 05day  (3278) adult male 30day  (3699) adult female 01day  (4115) adult female 05day  (5235) adult female 30day  (5570) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (7260) embryo 02-04hr  (5712) embryo 04-06hr  (4107) embryo 06-08hr  (4842) embryo 08-10hr  (5525) embryo 10-12hr  (5198) embryo 12-14hr  (3365) embryo 14-16hr  (2758) embryo 16-18hr  (2541) embryo 18-20hr  (1562) embryo 20-22hr    1231 embryo 22-24hr  (1532) larva L1    1293 larva L2  (1714) larva L3 12hr old  (1903) larva L3 puffstage 1-2  (5137) larva L3 puffstage 3-6  (7283) larva L3 puffstage 7-9  (11476) white prepupae new  (12178) white prepupae 12hr  (9265) white prepupae 24hr  (6197) pupae 2d postWPP  (4850) pupae 3d postWPP  (3352) pupae 4d postWPP  (2649) adult male 01day  (3021) adult male 05day  (3278) adult male 30day  (3699) adult female 01day  (4115) adult female 05day  (5235) adult female 30day  (5570) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    7260 embryo 02-04hr    5712 embryo 04-06hr    4107 embryo 06-08hr    4842 embryo 08-10hr    5525 embryo 10-12hr    5198 embryo 12-14hr    3365 embryo 14-16hr    2758 embryo 16-18hr    2541 embryo 18-20hr    1562 embryo 20-22hr    1231 embryo 22-24hr    1532 larva L1    1293 larva L2    1714 larva L3 12hr old    1903 larva L3 puffstage 1-2    5137 larva L3 puffstage 3-6    7283 larva L3 puffstage 7-9  (11476) white prepupae new  (12178) white prepupae 12hr    9265 white prepupae 24hr    6197 pupae 2d postWPP    4850 pupae 3d postWPP    3352 pupae 4d postWPP    2649 adult male 01day    3021 adult male 05day    3278 adult male 30day    3699 adult female 01day    4115 adult female 05day    5235 adult female 30day    5570 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    7260 embryo 02-04hr    5712 embryo 04-06hr    4107 embryo 06-08hr    4842 embryo 08-10hr    5525 embryo 10-12hr    5198 embryo 12-14hr    3365 embryo 14-16hr    2758 embryo 16-18hr    2541 embryo 18-20hr    1562 embryo 20-22hr    1231 embryo 22-24hr    1532 larva L1    1293 larva L2    1714 larva L3 12hr old    1903 larva L3 puffstage 1-2    5137 larva L3 puffstage 3-6    7283 larva L3 puffstage 7-9    11476 white prepupae new    12178 white prepupae 12hr    9265 white prepupae 24hr    6197 pupae 2d postWPP    4850 pupae 3d postWPP    3352 pupae 4d postWPP    2649 adult male 01day    3021 adult male 05day    3278 adult male 30day    3699 adult female 01day    4115 adult female 05day    5235 adult female 30day    5570 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0033452 expression level Developmental Stage   Expression Level embryo 00-02hr    7260 embryo 02-04hr    5712 embryo 04-06hr    4107 embryo 06-08hr    4842 embryo 08-10hr    5525 embryo 10-12hr    5198 embryo 12-14hr    3365 embryo 14-16hr    2758 embryo 16-18hr    2541 embryo 18-20hr    1562 embryo 20-22hr    1231 embryo 22-24hr    1532 larva L1    1293 larva L2    1714 larva L3 12hr old    1903 larva L3 puffstage 1-2    5137 larva L3 puffstage 3-6    7283 larva L3 puffstage 7-9    11476 white prepupae new    12178 white prepupae 12hr    9265 white prepupae 24hr    6197 pupae 2d postWPP    4850 pupae 3d postWPP    3352 pupae 4d postWPP    2649 adult male 01day    3021 adult male 05day    3278 adult male 30day    3699 adult female 01day    4115 adult female 05day    5235 adult female 30day    5570 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (7260) embryo 02-04hr  (5712) embryo 04-06hr  (4107) embryo 06-08hr  (4842) embryo 08-10hr  (5525) embryo 10-12hr  (5198) embryo 12-14hr  (3365) embryo 14-16hr  (2758) embryo 16-18hr  (2541) embryo 18-20hr  (1562) embryo 20-22hr  (1231) embryo 22-24hr  (1532) larva L1  (1293) larva L2  (1714) larva L3 12hr old  (1903) larva L3 puffstage 1-2  (5137) larva L3 puffstage 3-6  (7283) larva L3 puffstage 7-9  (11476) white prepupae new  (12178) white prepupae 12hr  (9265) white prepupae 24hr  (6197) pupae 2d postWPP  (4850) pupae 3d postWPP  (3352) pupae 4d postWPP  (2649) adult male 01day  (3021) adult male 05day  (3278) adult male 30day  (3699) adult female 01day  (4115) adult female 05day  (5235) adult female 30day  (5570) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (7260) embryo 02-04hr  (5712) embryo 04-06hr  (4107) embryo 06-08hr  (4842) embryo 08-10hr  (5525) embryo 10-12hr  (5198) embryo 12-14hr  (3365) embryo 14-16hr  (2758) embryo 16-18hr  (2541) embryo 18-20hr  1562 embryo 20-22hr    1231 embryo 22-24hr  1532 larva L1    1293 larva L2  1714 larva L3 12hr old  1903 larva L3 puffstage 1-2  (5137) larva L3 puffstage 3-6  (7283) larva L3 puffstage 7-9  (11476) white prepupae new  (12178) white prepupae 12hr  (9265) white prepupae 24hr  (6197) pupae 2d postWPP  (4850) pupae 3d postWPP  (3352) pupae 4d postWPP  (2649) adult male 01day  (3021) adult male 05day  (3278) adult male 30day  (3699) adult female 01day  (4115) adult female 05day  (5235) adult female 30day  (5570) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    7260 embryo 02-04hr    5712 embryo 04-06hr    4107 embryo 06-08hr    4842 embryo 08-10hr    5525 embryo 10-12hr    5198 embryo 12-14hr    3365 embryo 14-16hr    2758 embryo 16-18hr    2541 embryo 18-20hr    1562 embryo 20-22hr    1231 embryo 22-24hr    1532 larva L1    1293 larva L2    1714 larva L3 12hr old    1903 larva L3 puffstage 1-2    5137 larva L3 puffstage 3-6    7283 larva L3 puffstage 7-9  11476 white prepupae new  12178 white prepupae 12hr    9265 white prepupae 24hr    6197 pupae 2d postWPP    4850 pupae 3d postWPP    3352 pupae 4d postWPP    2649 adult male 01day    3021 adult male 05day    3278 adult male 30day    3699 adult female 01day    4115 adult female 05day    5235 adult female 30day    5570 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    7260 embryo 02-04hr    5712 embryo 04-06hr    4107 embryo 06-08hr    4842 embryo 08-10hr    5525 embryo 10-12hr    5198 embryo 12-14hr    3365 embryo 14-16hr    2758 embryo 16-18hr    2541 embryo 18-20hr    1562 embryo 20-22hr    1231 embryo 22-24hr    1532 larva L1    1293 larva L2    1714 larva L3 12hr old    1903 larva L3 puffstage 1-2    5137 larva L3 puffstage 3-6    7283 larva L3 puffstage 7-9    11476 white prepupae new    12178 white prepupae 12hr    9265 white prepupae 24hr    6197 pupae 2d postWPP    4850 pupae 3d postWPP    3352 pupae 4d postWPP    2649 adult male 01day    3021 adult male 05day    3278 adult male 30day    3699 adult female 01day    4115 adult female 05day    5235 adult female 30day    5570 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0033452    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0033452 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult crop, larval/adult midgut, larval Malpighian tubules, larval fat body, larval/adult salivary gland, adult female reproductive system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval/adult central nervous system, larval/adult hindgut, adult Malpighian tubules, adult heart, adult fat body, larval trachea, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0033452 expression level Tissue   Expression Level Larval Central Nervous System    308.15 Larval Midgut    683.3 Larval Hindgut    357.5 Larval Malpighian Tubules    734.1 Larval Fat Body    1099.6 Larval Salivary Gland    506.4 Larval Trachea    473.1 Larval Carcass    383.4 Adult Head    448.7 Adult Eye    610.05 Adult Brain    370.8 Adult Thoracic-Abdominal Ganglion    359.2 Adult Crop    564.1 Adult Midgut    580.9 Adult Hindgut    435.9 Adult Malpighian Tubules    416.1 Adult Fat Body    320.7 Adult Salivary Gland    736.7 Adult Heart    488.925 Adult VirginFemale Spermatheca    548.7 Adult InseminatedFemale Spermatheca    549.3 Adult Ovary    509 Adult Testis    194.9 Adult Male Accessory Gland    463.4 Adult Carcass    372.2 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    308.15 Larval Midgut  (683.3) Larval Hindgut    357.5 Larval Malpighian Tubules  (734.1) Larval Fat Body  (1099.6) Larval Salivary Gland  506.4 Larval Trachea    473.1 Larval Carcass    383.4 Adult Head    448.7 Adult Eye  (610.05) Adult Brain    370.8 Adult Thoracic-Abdominal Ganglion    359.2 Adult Crop  (564.1) Adult Midgut  (580.9) Adult Hindgut    435.9 Adult Malpighian Tubules    416.1 Adult Fat Body    320.7 Adult Salivary Gland  (736.7) Adult Heart    488.925 Adult VirginFemale Spermatheca  (548.7) Adult InseminatedFemale Spermatheca  (549.3) Adult Ovary  509 Adult Testis    194.9 Adult Male Accessory Gland    463.4 Adult Carcass    372.2 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    308.15 Larval Midgut    683.3 Larval Hindgut    357.5 Larval Malpighian Tubules    734.1 Larval Fat Body  (1099.6) Larval Salivary Gland    506.4 Larval Trachea    473.1 Larval Carcass    383.4 Adult Head    448.7 Adult Eye    610.05 Adult Brain    370.8 Adult Thoracic-Abdominal Ganglion    359.2 Adult Crop    564.1 Adult Midgut    580.9 Adult Hindgut    435.9 Adult Malpighian Tubules    416.1 Adult Fat Body    320.7 Adult Salivary Gland    736.7 Adult Heart    488.925 Adult VirginFemale Spermatheca    548.7 Adult InseminatedFemale Spermatheca    549.3 Adult Ovary    509 Adult Testis    194.9 Adult Male Accessory Gland    463.4 Adult Carcass    372.2 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    308.15 Larval Midgut    683.3 Larval Hindgut    357.5 Larval Malpighian Tubules    734.1 Larval Fat Body    1099.6 Larval Salivary Gland    506.4 Larval Trachea    473.1 Larval Carcass    383.4 Adult Head    448.7 Adult Eye    610.05 Adult Brain    370.8 Adult Thoracic-Abdominal Ganglion    359.2 Adult Crop    564.1 Adult Midgut    580.9 Adult Hindgut    435.9 Adult Malpighian Tubules    416.1 Adult Fat Body    320.7 Adult Salivary Gland    736.7 Adult Heart    488.925 Adult VirginFemale Spermatheca    548.7 Adult InseminatedFemale Spermatheca    549.3 Adult Ovary    509 Adult Testis    194.9 Adult Male Accessory Gland    463.4 Adult Carcass    372.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0033452 expression level Tissue   Expression Level Larval Central Nervous System    308.15 Larval Midgut    683.3 Larval Hindgut    357.5 Larval Malpighian Tubules    734.1 Larval Fat Body    1099.6 Larval Salivary Gland    506.4 Larval Trachea    473.1 Larval Carcass    383.4 Adult Head    448.7 Adult Eye    610.05 Adult Brain    370.8 Adult Thoracic-Abdominal Ganglion    359.2 Adult Crop    564.1 Adult Midgut    580.9 Adult Hindgut    435.9 Adult Malpighian Tubules    416.1 Adult Fat Body    320.7 Adult Salivary Gland    736.7 Adult Heart    488.925 Adult VirginFemale Spermatheca    548.7 Adult InseminatedFemale Spermatheca    549.3 Adult Ovary    509 Adult Testis    194.9 Adult Male Accessory Gland    463.4 Adult Carcass    372.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    308.15 Larval Midgut  683.3 Larval Hindgut    357.5 Larval Malpighian Tubules  734.1 Larval Fat Body  (1099.6) Larval Salivary Gland  506.4 Larval Trachea    473.1 Larval Carcass    383.4 Adult Head    448.7 Adult Eye  610.05 Adult Brain    370.8 Adult Thoracic-Abdominal Ganglion    359.2 Adult Crop  564.1 Adult Midgut  580.9 Adult Hindgut    435.9 Adult Malpighian Tubules    416.1 Adult Fat Body    320.7 Adult Salivary Gland  736.7 Adult Heart    488.925 Adult VirginFemale Spermatheca  548.7 Adult InseminatedFemale Spermatheca  549.3 Adult Ovary  509 Adult Testis    194.9 Adult Male Accessory Gland    463.4 Adult Carcass    372.2 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    308.15 Larval Midgut    683.3 Larval Hindgut    357.5 Larval Malpighian Tubules    734.1 Larval Fat Body  1099.6 Larval Salivary Gland    506.4 Larval Trachea    473.1 Larval Carcass    383.4 Adult Head    448.7 Adult Eye    610.05 Adult Brain    370.8 Adult Thoracic-Abdominal Ganglion    359.2 Adult Crop    564.1 Adult Midgut    580.9 Adult Hindgut    435.9 Adult Malpighian Tubules    416.1 Adult Fat Body    320.7 Adult Salivary Gland    736.7 Adult Heart    488.925 Adult VirginFemale Spermatheca    548.7 Adult InseminatedFemale Spermatheca    549.3 Adult Ovary    509 Adult Testis    194.9 Adult Male Accessory Gland    463.4 Adult Carcass    372.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    308.15 Larval Midgut    683.3 Larval Hindgut    357.5 Larval Malpighian Tubules    734.1 Larval Fat Body    1099.6 Larval Salivary Gland    506.4 Larval Trachea    473.1 Larval Carcass    383.4 Adult Head    448.7 Adult Eye    610.05 Adult Brain    370.8 Adult Thoracic-Abdominal Ganglion    359.2 Adult Crop    564.1 Adult Midgut    580.9 Adult Hindgut    435.9 Adult Malpighian Tubules    416.1 Adult Fat Body    320.7 Adult Salivary Gland    736.7 Adult Heart    488.925 Adult VirginFemale Spermatheca    548.7 Adult InseminatedFemale Spermatheca    549.3 Adult Ovary    509 Adult Testis    194.9 Adult Male Accessory Gland    463.4 Adult Carcass    372.2 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    448.7   NA  Eye    610.05   NA  Brain    370.8   308.15  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    359.2   NA  Crop    564.1   683.3  Midgut    580.9   357.5  Hindgut    435.9   734.1  Malpighian Tubules    416.1   1099.6  Fat Body    320.7   506.4  Salivary Gland    736.7   NA  Heart    488.925   473.1  Trachea    NA   NA  VirginFemale Spermatheca    548.7   NA  InseminatedFemale Spermatheca    549.3   NA  Ovary    509   NA  Testis    194.9   NA  Male Accessory Gland    463.4   383.4  Carcass    372.2 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_23
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033452 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1599-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG1599EY09354 viable, with Scer\GAL4pnr-MD237 CG1599GD4531 Sterility Allele fertile CG1599EY09354 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG1599 Class Mutagen Stocks Known lesion CG1599EY09354 P-element activity 1 -- CG1599G7738 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG1599 Class Mutagen Stocks Known lesion CG1599GD4531 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG1599KK107576 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD4531} NA P{KK107576} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}CG1599G7738 NA P{EPgy2}CG1599EY09354 NA
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term Evidence References
SNAP receptor activity non-traceable author statement (FlyBase, 1992-)
Biological Process
CV term Evidence References
intracellular protein transport inferred by curator from GO:0005484 (FlyBase, 1992-) vesicle-mediated transport inferred from electronic annotation with InterPro:IPR001388, InterPro:IPR010908 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
integral to membrane inferred from electronic annotation with InterPro:IPR001388, InterPro:IPR010908 (FlyBase Curators et al., 2004-) plasma membrane inferred from sequence or structural similarity with UniProtKB:P51809 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG1599 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 61844 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0033452 DroID - A comprehensive database of gene and protein interactions. • FBgn0033452 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36015
Orthologs
Genome-wide drosophilid orthologs	Dana\GF11075 Dere\GG25257 Dgri\GH21327 Dmoj\GI20745 Dper\GL20026 Dpse\GA14039 Dsec\GM20575 Dsim\GD10048 Dvir\GJ20482 Dwil\GK20965 Dyak\GE22017
Curated drosophilid orthologs	Dpse\GA14039
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AGAP000700-PA Anopheles gambiae (mosquito) XP_623358.1 Apis mellifera (honey bee) XP_001949229.1 Acyrthosiphon pisum (pea aphid) At2g25340.1 Arabidopsis thaliana (wall cress) 86357 Batrachochytrium dendrobatidis (chytrid fungus) 215087 Branchiostoma floridae (lancelet) BGIBMGA001258-PA Bombyx mori (silk worm) ENSBTAP00000044930 Bos taurus (bovine) ENSCAFP00000029056 Canis familiaris (dog) ENSCINP00000026583 Ciona intestinalis (sea squirt) CMH176C Cyanidioschyzon merolae (red alga) cn01206 Cryptococcus neoformans (yeast-like fungus) cgd6_170 Cryptosporidium parvum (protozoan parasite) CPIJ010714 Culex pipens (mosquito) ENSCPOP00000017508 Cavia porcellus (guinea pig) 105787 Chlamidomonas reinhardtii (green alga) ENSCSAVP00000015297 Ciona savignyi (sedentary tunicate) 163659 Capitella spl (polychaete worm) DDB0231542 Dictyostelium discoideum (amoeba) 190346 Daphnia pulex (daphnia) ENSDARP00000041098 Danio rerio (zebra fish) ENSECAP00000011898 Equus caballus (horse) XP_655986 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000024576 Gymnopilus aculeatus (mushroom) ENSGALP00000012071 Gallus gallus (chicken) 185780 Hypsipyla robusta (cedar shoot borer) ENSP00000262640 Homo sapiens (human) ISCW007939-PA Ixodes scapularis (deer tick) 193035 Lottia gigantea (owl limpet) LmjF27.2350 Leishmania major (virus) 37114 Monocosta brevicollis (choanoflagellate) ENSMODP00000007638 Monodelphis domestica (gray opossum) ENSMMUP00000002698 Macaca mulatta (rhesus monkey) ENSMUSP00000052262 Mus musculus (house mouse) 209672 Nematostella vectensis (starlet anemone) XP_001605020.1 Nasonia vitripennis (wasp) ENSOANP00000013861 Ornithorynchus anatinus (platypus) ENSORLP00000012845 Oryzias latipes (japanese killifish) LOC_Os10g06540.1 Oryza sativa (asian rice) 28422 Ostreococcus tauri (green alga) MAL13P1.16 Plasmodium falciparum (protozoal parasite) PHUM001227-PA Pediculus humanus (human body louse) 215490 Physcomitrella patens (moss) ENSPPYP00000023405 Pongo pygmaeus (orangutan) 96607 Phytophthora ramorum (sudden oak death pathogen) 158594 Phytophthora sojae (root rot pathogen) 737243 Populus trichocarpa (black cottonwood) ENSPTRP00000038738 Pan troglodytes (chimpanzee) PVX_122000 Plasmodium vivax (protozoal parasite) ENSRNOP00000011065 Rattus norvegicus (norway rat) 4763022 Sorghum bicolor (sorghum) XP_001188931.1 Strongylocentrotus purpuratus (purple sea urchin) 30367 Trichoplax adhaerens (metazoa) XP_974643.1 Tribolium castaneum (red flour beetle) Tc00.1047053507801.179 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053511627.60 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000006836 Tetraodon nigroviridis (green spotted pufferfish) 803 Thalassiosira pseudonana (marine diatom) 1.m01003 Tetrahymena thermophila (ciliate protozoa) 88601.m00536 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000039822 Xenopus tropicalis (frog) YALI0B04026g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV14429 LH23684 ISCW007939 FBgn0239249 FBgn0222957 FBgn0207622 FBgn0181823 FBgn0175457 JGI_V11_190346 FBgn0074070 FBgn0157623 FBgn0143480 FBgn0130740 FBgn0128789 FBgn0117379 FBgn0088115 CPIJ010714 BGIBMGA001258 ACYPI009108 GB13035 AGAP000700 AAEL014273 PB20438 PHUM503090 GLEAN_08320
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	28488 y1 w*; P{EP}CG1599G7738/CyO 16934 y1 w67c23; P{EPgy2}CG1599EY09354
VDRC	v108733 P{KK107576}VIE-260B v13316 w1118 P{GD4531}v13316 v13317 w1118; P{GD4531}v13317
Genomic Clones ( 2 )
	BACR01L01 BACR30G11 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 38 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RH15778
Other clones	DPiM_RH15778
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GM08221 GM29360 LD06445 RE04286 RE09764 RE13594 RE27573 RE30289 RE44566 RE57873 RE67516 SD20433 SD24468 SD27754
Other clones	45654 54028 62349 63697 105452 117452 145855 CK01.25B.B6 Dmel_neb_010127_0364_2002 Dmel_neb_010215_0102_3332 Dmel_neb_010963_0150_2527 Dmel_neb_013936_0424_2713 EC28806 EC29935 EC33926 EK022539 EK162229 EK188041 EK190640 EK236648 FGC030C05 RH06812
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0033452 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36015
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	Expression is enriched in embryonic gonads. (Shigenobu et al., 2006) dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology. (Kiger et al., 2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_136680 RefSeq (Proteins) • NP_610524 DDBJ / EMBL / GenBank • AAF58892 AAL49317 AY071695 BI610373 CL528167 Entrez Gene - A searchable database of RefSeq genes. • 36015 UniProtKB/TrEMBL • Q7JYX5
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Synaptobrevin (IPR001388) Longin (IPR010908) Longin-like (IPR011012)
Linkouts
	BioGRID - A database of protein and genetic interactions • 61844 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0033452 DroID - A comprehensive database of gene and protein interactions. • FBgn0033452 DRSC - Results from RNAi screens. • FBgn0033452 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033452 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1599-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0033452 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36015 InParanoid A subset of ortholog calls from InParanoid. • AGAP000700-PA Anopheles gambiae (mosquito) XP_623358.1 Apis mellifera (honey bee) XP_001949229.1 Acyrthosiphon pisum (pea aphid) At2g25340.1 Arabidopsis thaliana (wall cress) 86357 Batrachochytrium dendrobatidis (chytrid fungus) 215087 Branchiostoma floridae (lancelet) BGIBMGA001258-PA Bombyx mori (silk worm) ENSBTAP00000044930 Bos taurus (bovine) ENSCAFP00000029056 Canis familiaris (dog) ENSCINP00000026583 Ciona intestinalis (sea squirt) CMH176C Cyanidioschyzon merolae (red alga) cn01206 Cryptococcus neoformans (yeast-like fungus) cgd6_170 Cryptosporidium parvum (protozoan parasite) CPIJ010714 Culex pipens (mosquito) ENSCPOP00000017508 Cavia porcellus (guinea pig) 105787 Chlamidomonas reinhardtii (green alga) ENSCSAVP00000015297 Ciona savignyi (sedentary tunicate) 163659 Capitella spl (polychaete worm) DDB0231542 Dictyostelium discoideum (amoeba) 190346 Daphnia pulex (daphnia) ENSDARP00000041098 Danio rerio (zebra fish) ENSECAP00000011898 Equus caballus (horse) XP_655986 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000024576 Gymnopilus aculeatus (mushroom) ENSGALP00000012071 Gallus gallus (chicken) 185780 Hypsipyla robusta (cedar shoot borer) ENSP00000262640 Homo sapiens (human) ISCW007939-PA Ixodes scapularis (deer tick) 193035 Lottia gigantea (owl limpet) LmjF27.2350 Leishmania major (virus) 37114 Monocosta brevicollis (choanoflagellate) ENSMODP00000007638 Monodelphis domestica (gray opossum) ENSMMUP00000002698 Macaca mulatta (rhesus monkey) ENSMUSP00000052262 Mus musculus (house mouse) 209672 Nematostella vectensis (starlet anemone) XP_001605020.1 Nasonia vitripennis (wasp) ENSOANP00000013861 Ornithorynchus anatinus (platypus) ENSORLP00000012845 Oryzias latipes (japanese killifish) LOC_Os10g06540.1 Oryza sativa (asian rice) 28422 Ostreococcus tauri (green alga) MAL13P1.16 Plasmodium falciparum (protozoal parasite) PHUM001227-PA Pediculus humanus (human body louse) 215490 Physcomitrella patens (moss) ENSPPYP00000023405 Pongo pygmaeus (orangutan) 96607 Phytophthora ramorum (sudden oak death pathogen) 158594 Phytophthora sojae (root rot pathogen) 737243 Populus trichocarpa (black cottonwood) ENSPTRP00000038738 Pan troglodytes (chimpanzee) PVX_122000 Plasmodium vivax (protozoal parasite) ENSRNOP00000011065 Rattus norvegicus (norway rat) 4763022 Sorghum bicolor (sorghum) XP_001188931.1 Strongylocentrotus purpuratus (purple sea urchin) 30367 Trichoplax adhaerens (metazoa) XP_974643.1 Tribolium castaneum (red flour beetle) Tc00.1047053507801.179 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053511627.60 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000006836 Tetraodon nigroviridis (green spotted pufferfish) 803 Thalassiosira pseudonana (marine diatom) 1.m01003 Tetrahymena thermophila (ciliate protozoa) 88601.m00536 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000039822 Xenopus tropicalis (frog) YALI0B04026g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36015 modMine - Data generated by the modENCODE project. • FBgn0033452 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV14429 LH23684 ISCW007939 FBgn0239249 FBgn0222957 FBgn0207622 FBgn0181823 FBgn0175457 JGI_V11_190346 FBgn0074070 FBgn0157623 FBgn0143480 FBgn0130740 FBgn0128789 FBgn0117379 FBgn0088115 CPIJ010714 BGIBMGA001258 ACYPI009108 GB13035 AGAP000700 AAEL014273 PB20438 PHUM503090 GLEAN_08320
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG1599 (Shigenobu et al., 2006, Keleman et al., 2009.8.5, Cammarato et al., 2011)
Name Synonym
Secondary FlyBase IDs
References ( 18 )
Research paper	Shigenobu et al., 2006, Proc. Natl. Acad. Sci. USA 103(37): 13728--13733 Molecular characterization of embryonic gonads by gene expression profiling in Drosophila melanogaster. [FBrf0193273]
Supplementary material	Cammarato et al., 2011, PLoS ONE 6(4): Table S1. Proteins & Peptides. [FBrf0214682] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Kiger et al., 2003, J. Biol. 2(4): Additional data file 1: The gene identity and primer sequences for dsRNAs used in the RNAi screens. [FBrf0174231]
Review	Filippini et al., 2001, Trends Biochem. Sci. 26(7): 407--409 Longins: a new evolutionary conserved VAMP family sharing a novel SNARE domain. [FBrf0182780]
Personal communication to FlyBase	Bellen, 2009.8.20, BDGP_2009_0825.GenExel.xml BDGP_2009_0825.GenExel.xml [FBrf0208536] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Bock, 2000.10.26, FlyBase error report for CG1599 on Thu Oct 26 01:05:17 2000. FlyBase error report for CG1599 on Thu Oct 26 01:05:17 2000. [FBrf0131193] Verstreken and Bellen, 2000.9.4, New genes and synaptic vesicle cycle proteins. New genes and synaptic vesicle cycle proteins. [FBrf0131218]
FlyBase analysis	FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]
Curated genome annotation	Ketchum, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126677]