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Gene Dmel\CAP

General Information
Symbol	Dmel\CAP	Species	D. melanogaster
Name	CAP	Annotation symbol	CG18408
Feature type	protein_coding_gene	FlyBase ID	FBgn0033504
Gene Model Status	Current	Stock availability	20 publicly available
Also Known As	DCAP, Rexin
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	46F9-47A1	Sequence location	2R:6,156,528..6,194,529 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene CAP is referred to in FlyBase by the symbol Dmel\CAP (CG18408, FBgn0033504). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: vinculin binding. The biological processes in which it is involved are not known. 27 alleles are reported. No phenotypic data is available. It has 21 annotated transcripts and 21 annotated polypeptides. Protein features are: Neutrophil cytosol factor 2 p67phox; Sorbin-like; Src homology-3 domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, larval/adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, inseminated spermatheca, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, larval Malpighian tubules, larval salivary gland, larval trachea, adult female reproductive system, adult testis. Comments on Affy2 ProbeSet: ProbeSet 1633353_s_at completely aligns to an exonic region of only a subset of 16 of the 17 FlyBase-annotated transcript isoforms of CAP. Gene sequence location is 2R:6156528..6194529.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10	Controlled Vocabulary Terms day 42 of adulthood day 41 of adulthood day 30 of adulthood day 49 of adulthood day 17 of adulthood day 45 of adulthood day 6 of adulthood day 5 of adulthood day 8 of adulthood day 26 of adulthood day 21 of adulthood day 13 of adulthood day 25 of adulthood day 22 of adulthood day 20 of adulthood day 39 of adulthood day 7 of adulthood day 36 of adulthood day 11 of adulthood day 37 of adulthood day 27 of adulthood day 18 of adulthood day 19 of adulthood day 28 of adulthood day 9 of adulthood day 29 of adulthood adult heart day 40 of adulthood day 16 of adulthood day 24 of adulthood day 15 of adulthood day 33 of adulthood day 43 of adulthood day 47 of adulthood day 38 of adulthood day 32 of adulthood day 48 of adulthood day 35 of adulthood day 23 of adulthood day 12 of adulthood day 10 of adulthood day 31 of adulthood spermatozoon day 34 of adulthood day 44 of adulthood day 14 of adulthood male day 46 of adulthood Alleles CAP[MI03547] CAP[MI03930] References Bellen, 2011.10.10, MISet953.xml Bellen, 2011.9.26, MI948.xml Insertions Mi{MIC}CAP[MI03547] Mi{MIC}CAP[MI03930]
FB2012_01	Sequence features BKN45387 HFA06846 HFA06743 HFA06744 HFA05215 BKN27936 HFA06745
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 46F9-47A1   Limits computationally determined from genome sequence between P{lacW}Hr46k10308 and P{PZ}lola00349&P{EP}lolaEP952
Experimentally Determined Cytological Location
Cytogenetic map Notes References 46F9-47A1     (Yamazaki and Nusse, 2002)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CAP for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CAP-RA FBtr0088341  NM_136727   8437   2376 CAP-RB FBtr0088344  NM_165760   6189   1734 CAP-RC FBtr0088343  NM_165757   3321   824 CAP-RD FBtr0088345  NM_165761   2376   527 CAP-RE FBtr0088346  NM_165762   1765   313 CAP-RF FBtr0088342  NM_165758   3510   811 CAP-RG FBtr0088340  NM_165759   3002   500 CAP-RH FBtr0088339  NM_136728   2545   500 CAP-RI FBtr0088338  NM_136726   2656   639 CAP-RJ FBtr0088347  NM_206073   2669   565 CAP-RK FBtr0299825  NM_001144164   3283   630 CAP-RL FBtr0299826  NM_001144165   8404   2365 CAP-RN FBtr0299828  NM_001144167   3157   313 CAP-RO FBtr0299829  NM_001144168   2806   630 CAP-RP FBtr0299830  NM_001144169   6521   1883 CAP-RQ FBtr0301131  NM_001144166   8545   2412 CAP-RR FBtr0301965  NM_001169639   5809   1743 CAP-RS FBtr0306688     2636   554 CAP-RT FBtr0306689     9022   2571 CAP-RU FBtr0306690     2871   674 CAP-RV FBtr0306691     8683   2458
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CAP-PA   FBpp0087430   267.7   2376   5.42     NP_610571   AAF58816 CAP-PB   FBpp0087433   196.9   1734   10.23     NP_724913   AAM68780 CAP-PC   FBpp0087432   92.6   824   9.12     NP_724910   AAM68778 CAP-PD   FBpp0087434   60.5   527   8.86     NP_724914   AAM68781 CAP-PE   FBpp0087435   35.5   313   8.42     NP_724915   AAM68782 CAP-PF   FBpp0087431   91.3   811   9.20     NP_724911   AAF58815 CAP-PG   FBpp0087429   56.5   500   7.34     NP_724912   AAM68779 CAP-PH   FBpp0087428   56.5   500   7.34     NP_610572   AAF58814 CAP-PI   FBpp0087427   72.0   639   9.02     NP_610570   AAF58813 CAP-PJ   FBpp0087436   63.9   565   8.35     NP_995795   AAS64879 CAP-PK   FBpp0289103   71.7   630   8.64     NP_001137636   ACL83090 CAP-PL   FBpp0289104   266.3   2365   5.49     NP_001137637   ACL83091 CAP-PN   FBpp0289106   35.5   313   8.42     NP_001137639   ACL83093 CAP-PO   FBpp0289107   71.7   630   8.64     NP_001137640   ACL83094 CAP-PP   FBpp0289108   212.0   1883   5.11     NP_001137641   ACL83095 CAP-PQ   FBpp0290354   272.1   2412   5.60     NP_001137638   ACL83092 CAP-PR   FBpp0291177   198.0   1743   10.20     NP_001163110   ACZ94385 CAP-PS   FBpp0297627   62.5   554   8.95       CAP-PT   FBpp0297628   288.9   2571   5.71       CAP-PU   FBpp0297629   76.9   674   9.03       CAP-PV   FBpp0297630   277.5   2458   5.65
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Neutrophil cytosol factor 2 p67phox (IPR000108) Src homology-3 domain (IPR001452) Sorbin-like (IPR003127)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA979480   AE013599 AAF58813   AE013599 AAF58814   AE013599 AAF58815   AE013599 AAF58816   AE013599 AAM68778   AE013599 AAM68779   AE013599 AAM68780   AE013599 AAM68781   AE013599 AAM68782   AE013599 AAS64879   AB053478 BAB62017   AB053479 BAB62018   AB053480 BAB62019   AB053481 BAB62020   AB053482 BAB62021   AE013599 ACL83090   AE013599 ACL83091   AE013599 ACL83092   AE013599 ACL83093   AE013599 ACL83094   AE013599 ACL83095   AE013599 ACZ94385   AI260907   AI297346   AI403448   AI519241   AI532298   AI533344   AI542309   AI542877   AW944151   AW944326   AY061565 AAL29113   BG638924   BG639916   BH011472   BH759203   BH840393   BI142063   BI164275   BI164332   BI164494   BI164754   BI166170   BI168848   BI169627   BI170240   BI212212   BI214936   BI230372   BI231338   BI231554   BI356647   BI368027   BI370161   BI371458   BI485515   BI565422   BI577591   BI605030   BI614819   BI617813   BI619468   BI620404   BI621843   BI624873   BI629329   BI630264   BP546812   BP546895   BQ103034   BT001690 AAN71445   BT001858 AAN71620   BT003217 AAO24972   BT003435 AAO39438   BT029611   BT029638   BT031113   BT120189   CK133330   CK659628   CL610202   CO178552   CO186488   CO186631   CO187834   CO262501   CO263833   CO270894   CO272972   CO273917   CO275237   CO280781   CO281870   CO283194   CO283662   CO284574   CO285365   CO286212   CO288827   CO289364   CO291395   CO291970   CO292140   CO292926   CO295033   CO303076   CO310044   CO310193   CO311018   CO313186   CO320927   CO322278   CO322326   CO324234   CO328335   CO328382   CO328847   CO330728   CO330856   CO339800   CO340091   CO341249   CO343871   CZ477917   CZ480353   CZ481743   CZ483961   CZ484600   CZ484601   EC058793   EC060531   EC063101   EC070450   EC075154   EC075981   EC076136   EC077001   EC079573   EC080255   EC081143   EC081602   EC086233   EC088045   EC209296   EC216331   EC221002   EC229235   EC234309   EC236967   EC237431   EC239291   EC242872   EC242873   EC246981   EC247137   EC248245   EC251629   EC252506   EC256625   EC257015   EC258256   EC258705   EC264544   EL875232   EL875360   EL884206   EL886437   EL886557   EL886774   ES693386   ES696193   ES696194   ES696195   ES696197   ES696199   ES696200   ES696201   ES696202   ES696203   ES696204   ES696205   ES696206   ES696208   ES696209   ES696210   ES696211   ES696212   EV588993   GH947493
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q86P80 Q8IGB7 Q8IGN4 Q966U7 Q966U8 Q966U9 Q966V0 Q966V1 Q7K1M7 A1Z870 A1Z869 Q7JR75 A1Z867 A1Z872 A1Z871 A1Z866 B7YZD9 B7YZD8 B7YZE0
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Wasbrough et al., 2010) day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0033504    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0033504 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0033504 expression level Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    26 embryo 04-06hr    27 embryo 06-08hr    124 embryo 08-10hr    177 embryo 10-12hr    306 embryo 12-14hr    756 embryo 14-16hr    1864 embryo 16-18hr    2616 embryo 18-20hr    4219 embryo 20-22hr    3308 embryo 22-24hr    3136 larva L1    2042 larva L2    1322 larva L3 12hr old    1739 larva L3 puffstage 1-2    814 larva L3 puffstage 3-6    889 larva L3 puffstage 7-9    589 white prepupae new    442 white prepupae 12hr    351 white prepupae 24hr    309 pupae 2d postWPP    1814 pupae 3d postWPP    1468 pupae 4d postWPP    1147 adult male 01day    1545 adult male 05day    1755 adult male 30day    1670 adult female 01day    919 adult female 05day    336 adult female 30day    345 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    26 embryo 04-06hr    27 embryo 06-08hr  (124) embryo 08-10hr  (177) embryo 10-12hr  (306) embryo 12-14hr  (756) embryo 14-16hr  (1864) embryo 16-18hr  (2616) embryo 18-20hr  (4219) embryo 20-22hr  (3308) embryo 22-24hr  (3136) larva L1  (2042) larva L2  (1322) larva L3 12hr old  (1739) larva L3 puffstage 1-2  (814) larva L3 puffstage 3-6  (889) larva L3 puffstage 7-9  (589) white prepupae new  (442) white prepupae 12hr  (351) white prepupae 24hr  (309) pupae 2d postWPP  (1814) pupae 3d postWPP  (1468) pupae 4d postWPP  (1147) adult male 01day  (1545) adult male 05day  (1755) adult male 30day  (1670) adult female 01day  (919) adult female 05day  (336) adult female 30day  (345) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    26 embryo 04-06hr    27 embryo 06-08hr    124 embryo 08-10hr    177 embryo 10-12hr    306 embryo 12-14hr    756 embryo 14-16hr  (1864) embryo 16-18hr  (2616) embryo 18-20hr  (4219) embryo 20-22hr  (3308) embryo 22-24hr  (3136) larva L1  (2042) larva L2    1322 larva L3 12hr old  (1739) larva L3 puffstage 1-2    814 larva L3 puffstage 3-6    889 larva L3 puffstage 7-9    589 white prepupae new    442 white prepupae 12hr    351 white prepupae 24hr    309 pupae 2d postWPP  (1814) pupae 3d postWPP  1468 pupae 4d postWPP    1147 adult male 01day  (1545) adult male 05day  (1755) adult male 30day  (1670) adult female 01day    919 adult female 05day    336 adult female 30day    345 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    26 embryo 04-06hr    27 embryo 06-08hr    124 embryo 08-10hr    177 embryo 10-12hr    306 embryo 12-14hr    756 embryo 14-16hr    1864 embryo 16-18hr    2616 embryo 18-20hr    4219 embryo 20-22hr    3308 embryo 22-24hr    3136 larva L1    2042 larva L2    1322 larva L3 12hr old    1739 larva L3 puffstage 1-2    814 larva L3 puffstage 3-6    889 larva L3 puffstage 7-9    589 white prepupae new    442 white prepupae 12hr    351 white prepupae 24hr    309 pupae 2d postWPP    1814 pupae 3d postWPP    1468 pupae 4d postWPP    1147 adult male 01day    1545 adult male 05day    1755 adult male 30day    1670 adult female 01day    919 adult female 05day    336 adult female 30day    345 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    26 embryo 04-06hr    27 embryo 06-08hr    124 embryo 08-10hr    177 embryo 10-12hr    306 embryo 12-14hr    756 embryo 14-16hr    1864 embryo 16-18hr    2616 embryo 18-20hr    4219 embryo 20-22hr    3308 embryo 22-24hr    3136 larva L1    2042 larva L2    1322 larva L3 12hr old    1739 larva L3 puffstage 1-2    814 larva L3 puffstage 3-6    889 larva L3 puffstage 7-9    589 white prepupae new    442 white prepupae 12hr    351 white prepupae 24hr    309 pupae 2d postWPP    1814 pupae 3d postWPP    1468 pupae 4d postWPP    1147 adult male 01day    1545 adult male 05day    1755 adult male 30day    1670 adult female 01day    919 adult female 05day    336 adult female 30day    345 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0033504 expression level Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    26 embryo 04-06hr    27 embryo 06-08hr    124 embryo 08-10hr    177 embryo 10-12hr    306 embryo 12-14hr    756 embryo 14-16hr    1864 embryo 16-18hr    2616 embryo 18-20hr    4219 embryo 20-22hr    3308 embryo 22-24hr    3136 larva L1    2042 larva L2    1322 larva L3 12hr old    1739 larva L3 puffstage 1-2    814 larva L3 puffstage 3-6    889 larva L3 puffstage 7-9    589 white prepupae new    442 white prepupae 12hr    351 white prepupae 24hr    309 pupae 2d postWPP    1814 pupae 3d postWPP    1468 pupae 4d postWPP    1147 adult male 01day    1545 adult male 05day    1755 adult male 30day    1670 adult female 01day    919 adult female 05day    336 adult female 30day    345 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    26 embryo 04-06hr    27 embryo 06-08hr  124 embryo 08-10hr  (177) embryo 10-12hr  (306) embryo 12-14hr  (756) embryo 14-16hr  (1864) embryo 16-18hr  (2616) embryo 18-20hr  (4219) embryo 20-22hr  (3308) embryo 22-24hr  (3136) larva L1  (2042) larva L2  (1322) larva L3 12hr old  (1739) larva L3 puffstage 1-2  (814) larva L3 puffstage 3-6  (889) larva L3 puffstage 7-9  (589) white prepupae new  (442) white prepupae 12hr  (351) white prepupae 24hr  (309) pupae 2d postWPP  (1814) pupae 3d postWPP  (1468) pupae 4d postWPP  (1147) adult male 01day  (1545) adult male 05day  (1755) adult male 30day  (1670) adult female 01day  (919) adult female 05day  (336) adult female 30day  (345) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    26 embryo 04-06hr    27 embryo 06-08hr    124 embryo 08-10hr    177 embryo 10-12hr    306 embryo 12-14hr    756 embryo 14-16hr  1864 embryo 16-18hr  (2616) embryo 18-20hr  (4219) embryo 20-22hr  (3308) embryo 22-24hr  (3136) larva L1  2042 larva L2    1322 larva L3 12hr old  1739 larva L3 puffstage 1-2    814 larva L3 puffstage 3-6    889 larva L3 puffstage 7-9    589 white prepupae new    442 white prepupae 12hr    351 white prepupae 24hr    309 pupae 2d postWPP  1814 pupae 3d postWPP  1468 pupae 4d postWPP    1147 adult male 01day  1545 adult male 05day  1755 adult male 30day  1670 adult female 01day    919 adult female 05day    336 adult female 30day    345 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    26 embryo 04-06hr    27 embryo 06-08hr    124 embryo 08-10hr    177 embryo 10-12hr    306 embryo 12-14hr    756 embryo 14-16hr    1864 embryo 16-18hr    2616 embryo 18-20hr    4219 embryo 20-22hr    3308 embryo 22-24hr    3136 larva L1    2042 larva L2    1322 larva L3 12hr old    1739 larva L3 puffstage 1-2    814 larva L3 puffstage 3-6    889 larva L3 puffstage 7-9    589 white prepupae new    442 white prepupae 12hr    351 white prepupae 24hr    309 pupae 2d postWPP    1814 pupae 3d postWPP    1468 pupae 4d postWPP    1147 adult male 01day    1545 adult male 05day    1755 adult male 30day    1670 adult female 01day    919 adult female 05day    336 adult female 30day    345 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    26 embryo 04-06hr    27 embryo 06-08hr    124 embryo 08-10hr    177 embryo 10-12hr    306 embryo 12-14hr    756 embryo 14-16hr    1864 embryo 16-18hr    2616 embryo 18-20hr    4219 embryo 20-22hr    3308 embryo 22-24hr    3136 larva L1    2042 larva L2    1322 larva L3 12hr old    1739 larva L3 puffstage 1-2    814 larva L3 puffstage 3-6    889 larva L3 puffstage 7-9    589 white prepupae new    442 white prepupae 12hr    351 white prepupae 24hr    309 pupae 2d postWPP    1814 pupae 3d postWPP    1468 pupae 4d postWPP    1147 adult male 01day    1545 adult male 05day    1755 adult male 30day    1670 adult female 01day    919 adult female 05day    336 adult female 30day    345 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0033504    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0033504 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, larval/adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, inseminated spermatheca, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, larval Malpighian tubules, larval salivary gland, larval trachea, adult female reproductive system, adult testis. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0033504 expression level Tissue   Expression Level Larval Central Nervous System    395.1 Larval Midgut    760.8 Larval Hindgut    1294 Larval Malpighian Tubules    262.5 Larval Fat Body    688.8 Larval Salivary Gland    111.2 Larval Trachea    162.775 Larval Carcass    1435.525 Adult Head    766.9 Adult Eye    1256.575 Adult Brain    302.7 Adult Thoracic-Abdominal Ganglion    406.4 Adult Crop    2047.4 Adult Midgut    544.3 Adult Hindgut    1361.7 Adult Malpighian Tubules    685.1 Adult Fat Body    817.6 Adult Salivary Gland    3110 Adult Heart    918.75 Adult VirginFemale Spermatheca    402.9 Adult InseminatedFemale Spermatheca    575.2 Adult Ovary    135.2 Adult Testis    168.7 Adult Male Accessory Gland    905.3 Adult Carcass    915 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    395.1 Larval Midgut  (760.8) Larval Hindgut  (1294) Larval Malpighian Tubules    262.5 Larval Fat Body  (688.8) Larval Salivary Gland    111.2 Larval Trachea    162.775 Larval Carcass  (1435.525) Adult Head  (766.9) Adult Eye  (1256.575) Adult Brain    302.7 Adult Thoracic-Abdominal Ganglion    406.4 Adult Crop  (2047.4) Adult Midgut  (544.3) Adult Hindgut  (1361.7) Adult Malpighian Tubules  (685.1) Adult Fat Body  (817.6) Adult Salivary Gland  (3110) Adult Heart  (918.75) Adult VirginFemale Spermatheca    402.9 Adult InseminatedFemale Spermatheca  (575.2) Adult Ovary    135.2 Adult Testis    168.7 Adult Male Accessory Gland  (905.3) Adult Carcass  (915) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    395.1 Larval Midgut    760.8 Larval Hindgut  (1294) Larval Malpighian Tubules    262.5 Larval Fat Body    688.8 Larval Salivary Gland    111.2 Larval Trachea    162.775 Larval Carcass  (1435.525) Adult Head    766.9 Adult Eye  (1256.575) Adult Brain    302.7 Adult Thoracic-Abdominal Ganglion    406.4 Adult Crop  (2047.4) Adult Midgut    544.3 Adult Hindgut  (1361.7) Adult Malpighian Tubules    685.1 Adult Fat Body    817.6 Adult Salivary Gland  (3110) Adult Heart    918.75 Adult VirginFemale Spermatheca    402.9 Adult InseminatedFemale Spermatheca    575.2 Adult Ovary    135.2 Adult Testis    168.7 Adult Male Accessory Gland    905.3 Adult Carcass    915 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    395.1 Larval Midgut    760.8 Larval Hindgut    1294 Larval Malpighian Tubules    262.5 Larval Fat Body    688.8 Larval Salivary Gland    111.2 Larval Trachea    162.775 Larval Carcass    1435.525 Adult Head    766.9 Adult Eye    1256.575 Adult Brain    302.7 Adult Thoracic-Abdominal Ganglion    406.4 Adult Crop    2047.4 Adult Midgut    544.3 Adult Hindgut    1361.7 Adult Malpighian Tubules    685.1 Adult Fat Body    817.6 Adult Salivary Gland    3110 Adult Heart    918.75 Adult VirginFemale Spermatheca    402.9 Adult InseminatedFemale Spermatheca    575.2 Adult Ovary    135.2 Adult Testis    168.7 Adult Male Accessory Gland    905.3 Adult Carcass    915 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0033504 expression level Tissue   Expression Level Larval Central Nervous System    395.1 Larval Midgut    760.8 Larval Hindgut    1294 Larval Malpighian Tubules    262.5 Larval Fat Body    688.8 Larval Salivary Gland    111.2 Larval Trachea    162.775 Larval Carcass    1435.525 Adult Head    766.9 Adult Eye    1256.575 Adult Brain    302.7 Adult Thoracic-Abdominal Ganglion    406.4 Adult Crop    2047.4 Adult Midgut    544.3 Adult Hindgut    1361.7 Adult Malpighian Tubules    685.1 Adult Fat Body    817.6 Adult Salivary Gland    3110 Adult Heart    918.75 Adult VirginFemale Spermatheca    402.9 Adult InseminatedFemale Spermatheca    575.2 Adult Ovary    135.2 Adult Testis    168.7 Adult Male Accessory Gland    905.3 Adult Carcass    915 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    395.1 Larval Midgut  760.8 Larval Hindgut  (1294) Larval Malpighian Tubules    262.5 Larval Fat Body  688.8 Larval Salivary Gland    111.2 Larval Trachea    162.775 Larval Carcass  (1435.525) Adult Head  766.9 Adult Eye  (1256.575) Adult Brain    302.7 Adult Thoracic-Abdominal Ganglion    406.4 Adult Crop  (2047.4) Adult Midgut  544.3 Adult Hindgut  (1361.7) Adult Malpighian Tubules  685.1 Adult Fat Body  (817.6) Adult Salivary Gland  (3110) Adult Heart  (918.75) Adult VirginFemale Spermatheca    402.9 Adult InseminatedFemale Spermatheca  575.2 Adult Ovary    135.2 Adult Testis    168.7 Adult Male Accessory Gland  (905.3) Adult Carcass  (915) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    395.1 Larval Midgut    760.8 Larval Hindgut  1294 Larval Malpighian Tubules    262.5 Larval Fat Body    688.8 Larval Salivary Gland    111.2 Larval Trachea    162.775 Larval Carcass  1435.525 Adult Head    766.9 Adult Eye  1256.575 Adult Brain    302.7 Adult Thoracic-Abdominal Ganglion    406.4 Adult Crop  (2047.4) Adult Midgut    544.3 Adult Hindgut  1361.7 Adult Malpighian Tubules    685.1 Adult Fat Body    817.6 Adult Salivary Gland  (3110) Adult Heart    918.75 Adult VirginFemale Spermatheca    402.9 Adult InseminatedFemale Spermatheca    575.2 Adult Ovary    135.2 Adult Testis    168.7 Adult Male Accessory Gland    905.3 Adult Carcass    915 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    395.1 Larval Midgut    760.8 Larval Hindgut    1294 Larval Malpighian Tubules    262.5 Larval Fat Body    688.8 Larval Salivary Gland    111.2 Larval Trachea    162.775 Larval Carcass    1435.525 Adult Head    766.9 Adult Eye    1256.575 Adult Brain    302.7 Adult Thoracic-Abdominal Ganglion    406.4 Adult Crop    2047.4 Adult Midgut    544.3 Adult Hindgut    1361.7 Adult Malpighian Tubules    685.1 Adult Fat Body    817.6 Adult Salivary Gland    3110 Adult Heart    918.75 Adult VirginFemale Spermatheca    402.9 Adult InseminatedFemale Spermatheca    575.2 Adult Ovary    135.2 Adult Testis    168.7 Adult Male Accessory Gland    905.3 Adult Carcass    915 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    766.9   NA  Eye    1256.575   NA  Brain    302.7   395.1  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    406.4   NA  Crop    2047.4   760.8  Midgut    544.3   1294  Hindgut    1361.7   262.5  Malpighian Tubules    685.1   688.8  Fat Body    817.6   111.2  Salivary Gland    3110   NA  Heart    918.75   162.775  Trachea    NA   NA  VirginFemale Spermatheca    402.9   NA  InseminatedFemale Spermatheca    575.2   NA  Ovary    135.2   NA  Testis    168.7   NA  Male Accessory Gland    905.3   1435.525  Carcass    915 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_18
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033504 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG18408-RI FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CAP Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | embryonic stage | partially, with CAP77-284 CAPa.77-284 lethal | embryonic stage | partially, with CAPa.77-284 CAP77-284 viable CAPCA06924 CAPCA07185 CAPEY08073 CAPEY16176 viable, with Scer\GAL4pnr-MD237 CAPGD8545 Sterility Allele fertile CAPEY08073 CAPEY16176 Phenotype manifest in Allele
Classical Alleles ( 20 )
For All Classical Alleles Show
Allele of CAP Class Mutagen Stocks Known lesion CAP5-HA-1965 1 -- CAPBG02184 P-element activity 1 -- CAPe00006 piggyBac transposase 1 -- CAPe02572 piggyBac transposase 1 -- CAPe03984 piggyBac transposase 1 -- CAPEY08073 P-element activity 1 -- CAPEY16176 P-element activity 1 -- CAPEY21786 P-element activity 1 -- CAPf01489 piggyBac transposase 1 -- CAPKG00083 P-element activity 1 -- CAPKG00192 1 -- CAPKG00308 P-element activity 1 -- CAPMB04531 1 -- CAPMI02963 1 -- CAPMI03547 1 -- CAPMI03930 1 -- CAPNP7370 1 -- CAPCA06924 P-element activity 0 Yes CAPCA07185 P-element activity 0 Yes CAPf02098 piggyBac transposase 0 --
Alleles Carried on Transgenic Constructs ( 7 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CAP Class Mutagen Stocks Known lesion CAPGD8545 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CAPHM05250 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CAPKK107936 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CAP77-284 in vitro construct - RNAi 0 Yes CAPa.77-284 in vitro construct - RNAi 0 Yes CAPS.hs in vitro construct - regulatory fusion 0 Yes CAPS.Scer\UAS in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8545} NA P{KK107936} NA P{TRiP.HM05250} NA P{UAS-CAP.S} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}CAPMI02963 NA Mi{MIC}CAPMI03547 NA Mi{MIC}CAPMI03930 NA P{GT1}CAPBG02184 NA P{PTT-GA}CAPCA06924 NA P{PTT-GA}CAPCA07185 NA P{RS5}CAP5-HA-1965 NA P{SUPor-P}CAPKG00083 NA P{SUPor-P}CAPKG00308 NA P{SUPor-P}hebeKG00192 NA PBac{RB}CAPe00006 NA PBac{RB}CAPe02572 NA PBac{RB}CAPe03984 NA PBac{WH}CAPf01489 NA PBac{WH}CAPf02098 NA insertion of mobile activating element P{EPgy2}CAPEY08073 NA P{EPgy2}CAPEY16176 NA P{EPgy2}CAPEY21786 NA insertion of enhancer trap P{lacW}l(2)SH1724SH1724 No insertion of enhancer trap binary system Mi{ET1}CAPMB04531 No P{GawB}CAPNP7370 No
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
vinculin binding inferred from sequence or structural similarity with EMBL:AF064807 (FlyBase, 1992-)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
focal adhesion inferred from sequence or structural similarity with EMBL:AF064807 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CAP allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 61904 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0033504 DroID - A comprehensive database of gene and protein interactions. • FBgn0033504 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36084
Orthologs
Genome-wide drosophilid orthologs	Dgri\GH21781 Dvir\GJ22205 Dwil\GK17791
Curated drosophilid orthologs	Dsim\CG18408 (Metta et al., 2006)
Linkouts	OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0236698 FBgn0219788 FBgn0209316 FBgn0195471 FBgn0182493 FBgn0176086 FBgn0245771 FBgn0148067 FBgn0142063 FBgn0129239 BGIBMGA012465 AAEL012890 PB20263
Stocks & Reagents
Stocks Listed in FlyBase ( 20 )
Bloomington	12596 w1118; P{GT1}CAPBG02184 36389 y1 w*; Mi{MIC}CAPMI03930 20017 y1 w67c23; P{EPgy2}CAPEY08073 21195 y1 w67c23; P{EPgy2}CAPEY16176 22508 y1 w67c23; P{EPgy2}CAPEY21786
Harvard	- PBac{RB}CAPe00006 - PBac{RB}CAPe02572 - PBac{RB}CAPe03984 - PBac{WH}CAPf01489
Kyoto	125500 w1118; P{RS5}CAP5-HA-1965
VDRC	v106309 P{KK107936}VIE-260B v19054 w1118; P{GD8545}v19054
	More stocks available...
Genomic Clones ( 1 )
	BACR48F07 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 132 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	IP17077 IP17177 LP11629 RE10170 RE58362 RH64582 SD03761 SD16465
Other clones	DPiM_RE58362 DPiM_RH64582 IP16877
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH22885 LD34077 LP04911 LP17522 RE03923 RE03987 RE04187 RE04492 RE06212 RE09741 RE10858 RE11631 RE17258 RE20791 RE21091 RE42836 RE53928 RE56578 RE68861 RE71293 RH44293 RH48258 RH50509 RH51547 RH53263 RH58174 RH59269 RH63193 RH70543 SD05124 SD09382 SD16060
Other clones	9914 11723 14433 52621 62796 65624 71402 72624 73446 97595 100443 103160 104267 106262 117946 120307 184070 192685 214211.38 214275.7 214315.39 214379.32 214479.36 214505.28 522407 CK01.21D.A6 CK01.23D.C10 CK01.71D.A8 CK01.88A.E2 CK01.90A.F8 CK01.101C.D1 CK01.110C.F6 CK01.112A.B10 Dmel_neb_014873_0118_1766 EK020227 EK021641 EK033841 EK057025 EK062103 EK069449 EK070856 EK078613 EK085610 EK100942 EK109025 EK112627 EK116838 EK136602 EK154840 EK158957 EK162458 EK164026 EK166327 EK168837 EK187810 EK187907 EK193032 EK198905 EK199317 EK201232 EK208405 EK220321 EK220702 EK223153 EK231831 EK239847 EK288821 EK291523 EK296037 EK296321 EP09022 EP09115 EP09430 EP10014 EP12119 EP18251 FGH110D04 FGH111C05 IP15247 IP15347 IP15547 IP17684 IP17784 IP17984 LD38758 RE22433 RP004207657 SD08586 UUGC0430
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0033504 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36084
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: rexin CG18408 (FlyBase, 1996-)
Source for database merge of
Additional comments	Source for identity of rexin CG18408 was sequence comparison (date:010707). (FlyBase, 1996-)
Other Comments
	dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology. (Kiger et al., 2003) CAP was isolated in a yeast two-hybrid screen, using Axn as a bait. (Yamazaki and Nusse, 2002) Annotations CG18408, CG18409, CG3451 merged as CG18408 in release 3 of the genome annotation, April 2002.
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_136726 NM_136727 NM_136728 NM_165757 NM_165758 NM_165759 NM_165760 NM_165761 NM_165762 NM_206073 NM_001144164 NM_001144165 NM_001144166 NM_001144167 NM_001144168 NM_001144169 NM_001169639 RefSeq (Proteins) • NP_610570 NP_610571 NP_610572 NP_724910 NP_724911 NP_724912 NP_724913 NP_724914 NP_724915 NP_995795 NP_001137636 NP_001137637 NP_001137638 NP_001137639 NP_001137640 NP_001137641 NP_001163110 DDBJ / EMBL / GenBank • AAF58813 AAF58814 AAF58815 AAF58816 AAL29113 AAM68778 AAM68779 AAM68780 AAM68781 AAM68782 AAN71445 AAN71620 AAO24972 AAO39438 AAS64879 AB053478 AB053479 AB053480 AB053481 AB053482 ACL83090 ACL83091 ACL83092 ACL83093 ACL83094 ACL83095 ACZ94385 AI297346 AI532298 AW944151 AW944326 AY061565 BAB62017 BAB62018 BAB62019 BAB62020 BAB62021 BH011472 BH759203 BH840393 BI230372 BI231554 BI371458 BI624873 BT001690 BT001858 BT003217 BT003435 CL610202 CZ477917 CZ480353 CZ481743 CZ483961 CZ484600 CZ484601 Entrez Gene - A searchable database of RefSeq genes. • 36084 UniProtKB/TrEMBL • A1Z866 A1Z867 A1Z869 A1Z870 A1Z871 A1Z872 B7YZD8 B7YZD9 B7YZE0 Q7JR75 Q7K1M7 Q8IGB7 Q8IGN4 Q86P80 Q966U7 Q966U8 Q966U9 Q966V0 Q966V1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Neutrophil cytosol factor 2 p67phox (IPR000108) Src homology-3 domain (IPR001452) Sorbin-like (IPR003127)
Linkouts
	BioGRID - A database of protein and genetic interactions • 61904 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0033504 DroID - A comprehensive database of gene and protein interactions. • FBgn0033504 DRSC - Results from RNAi screens. • FBgn0033504 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033504 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG18408-RI FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0033504 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36084 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36084 modMine - Data generated by the modENCODE project. • FBgn0033504 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0236698 FBgn0219788 FBgn0209316 FBgn0195471 FBgn0182493 FBgn0176086 FBgn0245771 FBgn0148067 FBgn0142063 FBgn0129239 BGIBMGA012465 AAEL012890 PB20263
Synonyms & Secondary IDs ( 10 )
Reported As
Symbol Synonym	CAP (Buszczak et al., 2007, Nelson et al., 2005, Kaltenbach et al., 2007, Strub et al., 2008, Firth and Baker, 2007, Serio et al., 2010, Wasbrough et al., 2010) cap (Zinzen et al., 2009) CAP/Vinexin (Avery et al., 2004) CG3451   CG18408 (Metta et al., 2006, Perkins et al., 2009, Keleman et al., 2009.8.5, Strub et al., 2008, Cammarato et al., 2011) CG18409 (Borras, 2003, ) DCAP (Yamazaki and Yanagawa, 2003, Yamazaki and Nusse, 2002) Rexin (Knust and Bossinger, 2002) rexin (Giot et al., 2003, )
Name Synonym	CAP (Nelson et al., 2005, Kaltenbach et al., 2007, Cammarato et al., 2011) cap (Zinzen et al., 2009) Rexin/CAP (Girard et al., 2006)
Secondary FlyBase IDs
	FBgn0033503 FBgn0033505
References ( 39 )
Generate a list of	All references relating to this gene ( 39 )
List References by type	Research paper  ( 12 ) Supplementary material  ( 7 ) Review  ( 1 ) Personal communication to FlyBase  ( 8 ) Abstract  ( 2 ) FlyBase analysis  ( 3 ) Computer file  ( 3 ) Automatic genome annotation  ( 1 ) Curated genome annotation  ( 1 ) DNA/RNA sequence record  ( 1 )
Recent research papers ( 1 )
	Serio et al., 2010, Cell Host Microbe 7(5): 388--398 Defining a Core Set of Actin Cytoskeletal Proteins Critical for Actin-Based Motility of Rickettsia. [FBrf0210774] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2010 Show reviews ...