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Gene Dmel\Obp47a

General Information
Symbol	Dmel\Obp47a	Species	D. melanogaster
Name	Odorant-binding protein 47a	Annotation symbol	CG12944
Feature type	protein_coding_gene	FlyBase ID	FBgn0033573
Gene Model Status	Current	Stock availability	3 publicly available
Also Known As	47a
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	47C6-47C6	Sequence location	2R:6,797,428..6,797,990 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Odorant-binding protein 47a is referred to in FlyBase by the symbol Dmel\Obp47a (CG12944, FBgn0033573). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: odorant binding. Based on sequence similarity, it is predicted to be involved in the biological process: sensory perception of chemical stimulus. 2 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Insect pheromone/odorant binding protein PhBP; Pheromone/general odorant binding protein, PBP/GOBP; Pheromone/general odorant binding protein, PBP/GOBP, domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of low expression to a trough of no expression detected. Peak expression observed at stages throughout the larval period, during late pupal stages. Summary of FlyAtlas Anatomical Expression Data: No expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1632938_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of Obp47a. Gene sequence location is 2R:6797428..6797990.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10	References Vieira and Rozas, 2011, Genome Biol. Evol. 3:
FB2012_01	Sequence features BKN31646 HFA06255
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 47C6-47C6   Limits computationally determined from genome sequence between P{lacW}l(2)k15826k15826&P{EP}EP471 and P{EP}shnEP2359&P{EP}shnEP644
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Obp47a for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Obp47a-RA FBtr0088199  NM_136788   498   165 Obp47a-RB FBtr0088200  NM_206088   483   160
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Obp47a-PA   FBpp0087295   18.9   165   4.86     NP_610632   AAF58726 Obp47a-PB   FBpp0089400   18.3   160   4.61     NP_995810   AAS64866
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Pheromone/general odorant binding protein, PBP/GOBP (IPR006170) Insect pheromone/odorant binding protein PhBP (IPR006625) Pheromone/general odorant binding protein, PBP/GOBP, domain (IPR023316)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE013599 AAF58726   AE013599 AAS64866   BT125040
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	A1Z8E4 A1Z8E3
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0033573    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0033573 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of low expression to a trough of no expression detected. Peak expression observed at stages throughout the larval period, during late pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0033573 expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    2 embryo 16-18hr    10 embryo 18-20hr    22 embryo 20-22hr    82 embryo 22-24hr    73 larva L1    206 larva L2    319 larva L3 12hr old    266 larva L3 puffstage 1-2    182 larva L3 puffstage 3-6    116 larva L3 puffstage 7-9    126 white prepupae new    24 white prepupae 12hr    2 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    123 pupae 4d postWPP    2 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    2 embryo 16-18hr    10 embryo 18-20hr    22 embryo 20-22hr    82 embryo 22-24hr    73 larva L1  (206) larva L2  (319) larva L3 12hr old  (266) larva L3 puffstage 1-2  (182) larva L3 puffstage 3-6  (116) larva L3 puffstage 7-9  (126) white prepupae new    24 white prepupae 12hr    2 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP  (123) pupae 4d postWPP    2 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    2 embryo 16-18hr    10 embryo 18-20hr    22 embryo 20-22hr    82 embryo 22-24hr    73 larva L1    206 larva L2    319 larva L3 12hr old    266 larva L3 puffstage 1-2    182 larva L3 puffstage 3-6    116 larva L3 puffstage 7-9    126 white prepupae new    24 white prepupae 12hr    2 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    123 pupae 4d postWPP    2 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    2 embryo 16-18hr    10 embryo 18-20hr    22 embryo 20-22hr    82 embryo 22-24hr    73 larva L1    206 larva L2    319 larva L3 12hr old    266 larva L3 puffstage 1-2    182 larva L3 puffstage 3-6    116 larva L3 puffstage 7-9    126 white prepupae new    24 white prepupae 12hr    2 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    123 pupae 4d postWPP    2 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    2 embryo 16-18hr    10 embryo 18-20hr    22 embryo 20-22hr    82 embryo 22-24hr    73 larva L1    206 larva L2    319 larva L3 12hr old    266 larva L3 puffstage 1-2    182 larva L3 puffstage 3-6    116 larva L3 puffstage 7-9    126 white prepupae new    24 white prepupae 12hr    2 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    123 pupae 4d postWPP    2 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0033573 expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    2 embryo 16-18hr    10 embryo 18-20hr    22 embryo 20-22hr    82 embryo 22-24hr    73 larva L1    206 larva L2    319 larva L3 12hr old    266 larva L3 puffstage 1-2    182 larva L3 puffstage 3-6    116 larva L3 puffstage 7-9    126 white prepupae new    24 white prepupae 12hr    2 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    123 pupae 4d postWPP    2 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    2 embryo 16-18hr    10 embryo 18-20hr    22 embryo 20-22hr    82 embryo 22-24hr    73 larva L1  (206) larva L2  (319) larva L3 12hr old  (266) larva L3 puffstage 1-2  (182) larva L3 puffstage 3-6  116 larva L3 puffstage 7-9  126 white prepupae new    24 white prepupae 12hr    2 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP  123 pupae 4d postWPP    2 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    2 embryo 16-18hr    10 embryo 18-20hr    22 embryo 20-22hr    82 embryo 22-24hr    73 larva L1    206 larva L2    319 larva L3 12hr old    266 larva L3 puffstage 1-2    182 larva L3 puffstage 3-6    116 larva L3 puffstage 7-9    126 white prepupae new    24 white prepupae 12hr    2 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    123 pupae 4d postWPP    2 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    2 embryo 16-18hr    10 embryo 18-20hr    22 embryo 20-22hr    82 embryo 22-24hr    73 larva L1    206 larva L2    319 larva L3 12hr old    266 larva L3 puffstage 1-2    182 larva L3 puffstage 3-6    116 larva L3 puffstage 7-9    126 white prepupae new    24 white prepupae 12hr    2 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    123 pupae 4d postWPP    2 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    2 embryo 16-18hr    10 embryo 18-20hr    22 embryo 20-22hr    82 embryo 22-24hr    73 larva L1    206 larva L2    319 larva L3 12hr old    266 larva L3 puffstage 1-2    182 larva L3 puffstage 3-6    116 larva L3 puffstage 7-9    126 white prepupae new    24 white prepupae 12hr    2 white prepupae 24hr    0 pupae 2d postWPP    1 pupae 3d postWPP    123 pupae 4d postWPP    2 adult male 01day    0 adult male 05day    0 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0033573    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0033573 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: No expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0033573 expression level Tissue   Expression Level Larval Central Nervous System    2.875 Larval Midgut    1.5 Larval Hindgut    2.7 Larval Malpighian Tubules    3.1 Larval Fat Body    2.6 Larval Salivary Gland no informative data Larval Trachea    2.975 Larval Carcass    1.5 Adult Head    2.9 Adult Eye    1 Adult Brain    0.9 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    5.8 Adult Midgut    2.2 Adult Hindgut    3.5 Adult Malpighian Tubules    6.1 Adult Fat Body    3.8 Adult Salivary Gland    4.4 Adult Heart    4.275 Adult VirginFemale Spermatheca    5.2 Adult InseminatedFemale Spermatheca    8.2 Adult Ovary    2 Adult Testis    2.6 Adult Male Accessory Gland    2.5 Adult Carcass    6.7 Expression Level Scale  None   Low  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    2.875 Larval Midgut    1.5 Larval Hindgut    2.7 Larval Malpighian Tubules    3.1 Larval Fat Body    2.6 Larval Salivary Gland no informative data Larval Trachea    2.975 Larval Carcass    1.5 Adult Head    2.9 Adult Eye    1 Adult Brain    0.9 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    5.8 Adult Midgut    2.2 Adult Hindgut    3.5 Adult Malpighian Tubules    6.1 Adult Fat Body    3.8 Adult Salivary Gland    4.4 Adult Heart    4.275 Adult VirginFemale Spermatheca    5.2 Adult InseminatedFemale Spermatheca    8.2 Adult Ovary    2 Adult Testis    2.6 Adult Male Accessory Gland    2.5 Adult Carcass    6.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    2.875 Larval Midgut    1.5 Larval Hindgut    2.7 Larval Malpighian Tubules    3.1 Larval Fat Body    2.6 Larval Salivary Gland no informative data Larval Trachea    2.975 Larval Carcass    1.5 Adult Head    2.9 Adult Eye    1 Adult Brain    0.9 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    5.8 Adult Midgut    2.2 Adult Hindgut    3.5 Adult Malpighian Tubules    6.1 Adult Fat Body    3.8 Adult Salivary Gland    4.4 Adult Heart    4.275 Adult VirginFemale Spermatheca    5.2 Adult InseminatedFemale Spermatheca    8.2 Adult Ovary    2 Adult Testis    2.6 Adult Male Accessory Gland    2.5 Adult Carcass    6.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2.875 Larval Midgut    1.5 Larval Hindgut    2.7 Larval Malpighian Tubules    3.1 Larval Fat Body    2.6 Larval Salivary Gland no informative data Larval Trachea    2.975 Larval Carcass    1.5 Adult Head    2.9 Adult Eye    1 Adult Brain    0.9 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    5.8 Adult Midgut    2.2 Adult Hindgut    3.5 Adult Malpighian Tubules    6.1 Adult Fat Body    3.8 Adult Salivary Gland    4.4 Adult Heart    4.275 Adult VirginFemale Spermatheca    5.2 Adult InseminatedFemale Spermatheca    8.2 Adult Ovary    2 Adult Testis    2.6 Adult Male Accessory Gland    2.5 Adult Carcass    6.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0033573 expression level Tissue   Expression Level Larval Central Nervous System    2.875 Larval Midgut    1.5 Larval Hindgut    2.7 Larval Malpighian Tubules    3.1 Larval Fat Body    2.6 Larval Salivary Gland no informative data Larval Trachea    2.975 Larval Carcass    1.5 Adult Head    2.9 Adult Eye    1 Adult Brain    0.9 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    5.8 Adult Midgut    2.2 Adult Hindgut    3.5 Adult Malpighian Tubules    6.1 Adult Fat Body    3.8 Adult Salivary Gland    4.4 Adult Heart    4.275 Adult VirginFemale Spermatheca    5.2 Adult InseminatedFemale Spermatheca    8.2 Adult Ovary    2 Adult Testis    2.6 Adult Male Accessory Gland    2.5 Adult Carcass    6.7 Expression Level Scale  None   Low  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    2.875 Larval Midgut    1.5 Larval Hindgut    2.7 Larval Malpighian Tubules    3.1 Larval Fat Body    2.6 Larval Salivary Gland no informative data Larval Trachea    2.975 Larval Carcass    1.5 Adult Head    2.9 Adult Eye    1 Adult Brain    0.9 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    5.8 Adult Midgut    2.2 Adult Hindgut    3.5 Adult Malpighian Tubules    6.1 Adult Fat Body    3.8 Adult Salivary Gland    4.4 Adult Heart    4.275 Adult VirginFemale Spermatheca    5.2 Adult InseminatedFemale Spermatheca    8.2 Adult Ovary    2 Adult Testis    2.6 Adult Male Accessory Gland    2.5 Adult Carcass    6.7 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    2.875 Larval Midgut    1.5 Larval Hindgut    2.7 Larval Malpighian Tubules    3.1 Larval Fat Body    2.6 Larval Salivary Gland no informative data Larval Trachea    2.975 Larval Carcass    1.5 Adult Head    2.9 Adult Eye    1 Adult Brain    0.9 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    5.8 Adult Midgut    2.2 Adult Hindgut    3.5 Adult Malpighian Tubules    6.1 Adult Fat Body    3.8 Adult Salivary Gland    4.4 Adult Heart    4.275 Adult VirginFemale Spermatheca    5.2 Adult InseminatedFemale Spermatheca    8.2 Adult Ovary    2 Adult Testis    2.6 Adult Male Accessory Gland    2.5 Adult Carcass    6.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2.875 Larval Midgut    1.5 Larval Hindgut    2.7 Larval Malpighian Tubules    3.1 Larval Fat Body    2.6 Larval Salivary Gland no informative data Larval Trachea    2.975 Larval Carcass    1.5 Adult Head    2.9 Adult Eye    1 Adult Brain    0.9 Adult Thoracic-Abdominal Ganglion    3 Adult Crop    5.8 Adult Midgut    2.2 Adult Hindgut    3.5 Adult Malpighian Tubules    6.1 Adult Fat Body    3.8 Adult Salivary Gland    4.4 Adult Heart    4.275 Adult VirginFemale Spermatheca    5.2 Adult InseminatedFemale Spermatheca    8.2 Adult Ovary    2 Adult Testis    2.6 Adult Male Accessory Gland    2.5 Adult Carcass    6.7 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland no informative data Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    2.9   NA  Eye    1   NA  Brain    0.9   2.875  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    3   NA  Crop    5.8   1.5  Midgut    2.2   2.7  Hindgut    3.5   3.1  Malpighian Tubules    6.1   2.6  Fat Body    3.8   no informative data  Salivary Gland    4.4   NA  Heart    4.275   2.975  Trachea    NA   NA  VirginFemale Spermatheca    5.2   NA  InseminatedFemale Spermatheca    8.2   NA  Ovary    2   NA  Testis    2.6   NA  Male Accessory Gland    2.5   1.5  Carcass    6.7 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033573 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG12944-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 Obp47aGD5441 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Obp47a Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Obp47a Class Mutagen Stocks Known lesion Obp47aGD5441 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes Obp47aKK111646 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel6059 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD5441} NA P{KK111646} NA reporter construct P{Obp47a-lacZ.G} No
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
	There is no information supporting a cellular component term for this gene. (Based on a review of available data before: 2006)
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
odorant binding inferred from sequence alignment with UniProtKB:P34174 (Hekmat-Scafe et al., 2002) inferred from sequence or structural similarity with UniProtKB:P34174 (Galindo and Smith, 2001)
Biological Process
CV term Evidence References
sensory perception of chemical stimulus inferred from sequence alignment with UniProtKB:P34174 (Hekmat-Scafe et al., 2002) inferred from sequence or structural similarity with UniProtKB:P34174 (Galindo and Smith, 2001)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Obp47a allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0033573
Orthologs
Genome-wide drosophilid orthologs	Dana\Obp47a Dere\Obp47a Dmoj\Obp47a Dper\Obp47a Dpse\Obp47a Dsec\Obp47a Dsim\Obp47a Dwil\Obp47a Dyak\Obp47a
Curated drosophilid orthologs	Dpse\Obp47a
Linkouts	OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0230570 FBgn0222939 FBgn0182529 FBgn0176131 FBgn0071976 FBgn0157505 FBgn0142491 FBgn0112355 FBgn0089558
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
VDRC	v102431 P{KK111646}VIE-260B v12505 w1118; P{GD5441}v12505 v12503 w1118; P{GD5441}v12503/TM3
Genomic Clones ( 1 )
	BACR13J10 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 1 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones	RT07037
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0033573 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36162
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_136788 NM_206088 RefSeq (Proteins) • NP_610632 NP_995810 DDBJ / EMBL / GenBank • AAF58726 AAS64866 Entrez Gene - A searchable database of RefSeq genes. • 36162 UniProtKB/TrEMBL • A1Z8E3 A1Z8E4
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Pheromone/general odorant binding protein, PBP/GOBP (IPR006170) Insect pheromone/odorant binding protein PhBP (IPR006625) Pheromone/general odorant binding protein, PBP/GOBP, domain (IPR023316)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0033573 DRSC - Results from RNAi screens. • FBgn0033573 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033573 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG12944-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0033573 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36162 modMine - Data generated by the modENCODE project. • FBgn0033573 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0230570 FBgn0222939 FBgn0182529 FBgn0176131 FBgn0071976 FBgn0157505 FBgn0142491 FBgn0112355 FBgn0089558
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	47a (Graham and Davies, 2002, Smith, 2002.1.14, Galindo and Smith, 2001) CG12944 (Graham, 2002.6.18, Vogt et al., 2002, Robertson, 2000.8.16, Keleman et al., 2009.8.5) DmelObp47a (Vieira and Rozas, 2011) Obp47a (Vieira et al., 2007, Zhou et al., 2009, Sousa-Neves and Rosas, 2010)
Name Synonym	Odorant-binding protein 47a (Galindo and Smith, 2001)
Secondary FlyBase IDs
References ( 20 )
Research paper	Vieira and Rozas, 2011, Genome Biol. Evol. 3: 476--490 Comparative Genomics of the Odorant-Binding and Chemosensory Protein Gene Families across the Arthropoda: Origin and Evolutionary History of the Chemosensory System. [FBrf0214323] Sousa-Neves and Rosas, 2010, PLoS ONE 5(5): e10485 An analysis of genetic changes during the divergence of Drosophila species. [FBrf0210766] Zhou et al., 2009, PLoS Genet. 5(10): e1000681 Plasticity of the chemoreceptor repertoire in Drosophila melanogaster. [FBrf0209112] Vieira et al., 2007, Genome Biol. 8(11): R235 Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution. [FBrf0205523] Graham and Davies, 2002, Gene 292(1-2): 43--55 The odorant-binding proteins of Drosophila melanogaster: annotation and characterization of a divergent gene family. [FBrf0151320] Hekmat-Scafe et al., 2002, Genome Res. 12(9): 1357--1369 Genome-wide analysis of the odorant-binding protein gene family in Drosophila melanogaster. [FBrf0151704] Vogt et al., 2002, J. exp. Biol. 205(6): 719--744 A comparative study of odorant binding protein genes: differential expression of the PBP1-GOBP2 gene cluster in Manduca sexta (Lepidoptera) and the organization of OBP genes in Drosophila melanogaster (Diptera). [FBrf0147124] Galindo and Smith, 2001, Genetics 159(3): 1059--1072 A large family of divergent Drosophila odorant-binding proteins expressed in gustatory and olfactory sensilla. [FBrf0141547]
Supplementary material	Vieira and Rozas, 2011, Genome Biol. Evol. 3: Supplementary Data 1. OBP protein sequences in FASTA format. [FBrf0216366] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Graham, 2002.6.18, Drosophila odorant binding protein annotations. Drosophila odorant binding protein annotations. [FBrf0149614] Hekmat-Scafe, 2002.3.5, OBP gene family. OBP gene family. [FBrf0151651] Smith, 2002.1.14, FASTA sequences of Obp. FASTA sequences of Obp. [FBrf0149565] Robertson, 2000.8.16, FlyBase error report for CG12944 on Wed Aug 16 14:47:32 2000. FlyBase error report for CG12944 on Wed Aug 16 14:47:32 2000. [FBrf0131077]
FlyBase analysis	FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398]