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Gene Dmel\Dyb

General Information
Symbol	Dmel\Dyb	Species	D. melanogaster
Name	Dystrobrevin-like	Annotation symbol	CG8529
Feature type	protein_coding_gene	FlyBase ID	FBgn0033739
Gene Model Status	Current	Stock availability	8 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	49A6-49A6	Sequence location	2R:8,324,850..8,340,421 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Dystrobrevin-like is referred to in FlyBase by the symbol Dmel\Dyb (CG8529, FBgn0033739). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: structural constituent of muscle; cytoskeletal protein binding. The biological processes in which it is involved are not known. 9 alleles are reported. No phenotypic data is available. It has 7 annotated transcripts and 7 annotated polypeptides. Protein features are: Distrobrevin; EF-hand domain, type 1; EF-hand domain, type 2; EF-hand-like domain; Zinc finger, ZZ-type. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-06 and 12-24 hour embryonic stages, during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult hindgut, larval Malpighian tubules, adult salivary gland, larval trachea, inseminated spermatheca, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1630118_s_at completely aligns to an exonic region of only a subset of 5 of the 6 FlyBase-annotated transcript isoforms of Dyb. Gene sequence location is 2R:8324850..8340421.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02	Controlled Vocabulary Terms calcium ion binding
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 49A6-49A6   Limits computationally determined from genome sequence between P{lacW}l(2)k11404k11404 and P{lacW}fdlk17040
Experimentally Determined Cytological Location
Cytogenetic map Notes References 49A5-49A7     (Greener, 2000.6.14)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Dyb for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Alternative translation stop created by use of multiphasic reading frames within coding region. Gene model reviewed during 5.39 Low-frequency RNA-Seq exon junction(s) not annotated. Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters. Gene model reviewed during 5.49
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Dyb-RA FBtr0087929  NM_165904   3326   614 Dyb-RC FBtr0087930  NM_165905   2845   623 Dyb-RD FBtr0100298  NM_001032237   3370   646 Dyb-RF FBtr0113074  NM_001103817   3004   816 Dyb-RG FBtr0305076  NM_001259351   2761   735 Dyb-RH FBtr0305077  NM_078988   2889   655 Dyb-RI FBtr0308613  NM_001032236   3219   702
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Dyb-PA   FBpp0087040   68.2   614   8.80     NP_725171   AAF58507 Dyb-PC   FBpp0087041   69.2   623   8.80     NP_725172   AAM68688 Dyb-PD   FBpp0099693   72.2   646   8.48     NP_001027408   AAZ52815 Dyb-PF   FBpp0111987   90.5   816   6.41     NP_001097287   ABV53778 Dyb-PG   FBpp0293613   82.0   735   6.51     NP_001246280   AFH08034 Dyb-PH   FBpp0293614   73.1   655   8.48     NP_523712   AAM68687 Dyb-PI   FBpp0300837   78.0   702   7.72     NP_001027407   AAZ52816
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, ZZ-type (IPR000433) EF-hand domain, type 1 (IPR015153) EF-hand domain, type 2 (IPR015154) Distrobrevin (IPR017432) EF-hand-like domain (IPR011992)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA567718   AE013599 AAF58507   AE013599 AAM68687   AE013599 AAM68688   AE013599 AAZ52815   AE013599 AAZ52816   AE013599 ABV53778   AF277387 AAG17396   AE013599 AFH08034   AI135807   AI257265   AI293489   AI296096   AI534604   AW944506   AY060479 AAL25518   BG639425   BI165980   BI173963   BI214809   BI232165   BI238395   BI356057   BI362998   BI363891   BI482409   BI482424   BI482427   BI483404   BT011013   BT011443   BT125956   CK659727   CO185735   CO185998   CO263306   CO264548   CO272600   CO276477   CO279640   CO282264   CO284933   CO287035   CO296591   CO296599   CO305324   CO308110   CO311183   CO311308   CO314317   CO321655   CZ472797   CZ472798   EC057118   EC060758   EC062077   EC068755   EC069686   EC197912   EC200700   EC202941   EC208216   EC212808   EC213525   EC220395   EC220867   EC223047   EC223412   EC236234   EC236532   EC238132   EC244293   EC245287   EV587747   GH941565   GH943988   GH945634   GH946711   GH948867   GH950175   GH952243   GH952646   GH953949   GH954152   GH959163   GH959790   GH961988   GH964194   GH967987   GH969155   GH969220   GH970233   GH970399   GH971191   GH974435   GH979064   GH980483   GH982444   GH983526   GH984051
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	A1Z904 Q0E9B2 A1Z907 A1Z906 A8DYB7 Q9GT70 Q95SU4
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Wasbrough et al., 2010)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult hindgut, larval Malpighian tubules, adult salivary gland, larval trachea, inseminated spermatheca, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    190.45 Larval Midgut    48.5 Larval Hindgut    98.6 Larval Malpighian Tubules    142.8 Larval Fat Body    39.5 Larval Salivary Gland    69.5 Larval Trachea    139.225 Larval Carcass    104.075 Adult Head    146.9 Adult Eye    241.625 Adult Brain    411.4 Adult Thoracic-Abdominal Ganglion    320.8 Adult Crop    378.3 Adult Midgut    60 Adult Hindgut    285.6 Adult Malpighian Tubules    81.8 Adult Fat Body    65.8 Adult Salivary Gland    211.9 Adult Heart    94.35 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    125 Adult Ovary    58 Adult Testis    5.5 Adult Male Accessory Gland    59 Adult Carcass    52.2 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    190.45 Larval Midgut    48.5 Larval Hindgut    98.6 Larval Malpighian Tubules    142.8 Larval Fat Body    39.5 Larval Salivary Gland    69.5 Larval Trachea    139.225 Larval Carcass    104.075 Adult Head    146.9 Adult Eye    241.625 Adult Brain    411.4 Adult Thoracic-Abdominal Ganglion    320.8 Adult Crop    378.3 Adult Midgut    60 Adult Hindgut    285.6 Adult Malpighian Tubules    81.8 Adult Fat Body    65.8 Adult Salivary Gland    211.9 Adult Heart    94.35 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    125 Adult Ovary    58 Adult Testis    5.5 Adult Male Accessory Gland    59 Adult Carcass    52.2 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    190.45 Larval Midgut    48.5 Larval Hindgut    98.6 Larval Malpighian Tubules    142.8 Larval Fat Body    39.5 Larval Salivary Gland    69.5 Larval Trachea    139.225 Larval Carcass    104.075 Adult Head    146.9 Adult Eye    241.625 Adult Brain    411.4 Adult Thoracic-Abdominal Ganglion    320.8 Adult Crop    378.3 Adult Midgut    60 Adult Hindgut    285.6 Adult Malpighian Tubules    81.8 Adult Fat Body    65.8 Adult Salivary Gland    211.9 Adult Heart    94.35 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    125 Adult Ovary    58 Adult Testis    5.5 Adult Male Accessory Gland    59 Adult Carcass    52.2 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    190.45 Larval Midgut    48.5 Larval Hindgut    98.6 Larval Malpighian Tubules    142.8 Larval Fat Body    39.5 Larval Salivary Gland    69.5 Larval Trachea    139.225 Larval Carcass    104.075 Adult Head    146.9 Adult Eye    241.625 Adult Brain    411.4 Adult Thoracic-Abdominal Ganglion    320.8 Adult Crop    378.3 Adult Midgut    60 Adult Hindgut    285.6 Adult Malpighian Tubules    81.8 Adult Fat Body    65.8 Adult Salivary Gland    211.9 Adult Heart    94.35 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    125 Adult Ovary    58 Adult Testis    5.5 Adult Male Accessory Gland    59 Adult Carcass    52.2 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    190.45 Larval Midgut    48.5 Larval Hindgut    98.6 Larval Malpighian Tubules    142.8 Larval Fat Body    39.5 Larval Salivary Gland    69.5 Larval Trachea    139.225 Larval Carcass    104.075 Adult Head    146.9 Adult Eye    241.625 Adult Brain    411.4 Adult Thoracic-Abdominal Ganglion    320.8 Adult Crop    378.3 Adult Midgut    60 Adult Hindgut    285.6 Adult Malpighian Tubules    81.8 Adult Fat Body    65.8 Adult Salivary Gland    211.9 Adult Heart    94.35 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    125 Adult Ovary    58 Adult Testis    5.5 Adult Male Accessory Gland    59 Adult Carcass    52.2 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    190.45 Larval Midgut    48.5 Larval Hindgut    98.6 Larval Malpighian Tubules    142.8 Larval Fat Body    39.5 Larval Salivary Gland    69.5 Larval Trachea    139.225 Larval Carcass    104.075 Adult Head    146.9 Adult Eye    241.625 Adult Brain    411.4 Adult Thoracic-Abdominal Ganglion    320.8 Adult Crop    378.3 Adult Midgut    60 Adult Hindgut    285.6 Adult Malpighian Tubules    81.8 Adult Fat Body    65.8 Adult Salivary Gland    211.9 Adult Heart    94.35 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    125 Adult Ovary    58 Adult Testis    5.5 Adult Male Accessory Gland    59 Adult Carcass    52.2 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    190.45 Larval Midgut    48.5 Larval Hindgut    98.6 Larval Malpighian Tubules    142.8 Larval Fat Body    39.5 Larval Salivary Gland    69.5 Larval Trachea    139.225 Larval Carcass    104.075 Adult Head    146.9 Adult Eye    241.625 Adult Brain    411.4 Adult Thoracic-Abdominal Ganglion    320.8 Adult Crop    378.3 Adult Midgut    60 Adult Hindgut    285.6 Adult Malpighian Tubules    81.8 Adult Fat Body    65.8 Adult Salivary Gland    211.9 Adult Heart    94.35 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    125 Adult Ovary    58 Adult Testis    5.5 Adult Male Accessory Gland    59 Adult Carcass    52.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    190.45 Larval Midgut    48.5 Larval Hindgut    98.6 Larval Malpighian Tubules    142.8 Larval Fat Body    39.5 Larval Salivary Gland    69.5 Larval Trachea    139.225 Larval Carcass    104.075 Adult Head    146.9 Adult Eye    241.625 Adult Brain    411.4 Adult Thoracic-Abdominal Ganglion    320.8 Adult Crop    378.3 Adult Midgut    60 Adult Hindgut    285.6 Adult Malpighian Tubules    81.8 Adult Fat Body    65.8 Adult Salivary Gland    211.9 Adult Heart    94.35 Adult VirginFemale Spermatheca    74.4 Adult InseminatedFemale Spermatheca    125 Adult Ovary    58 Adult Testis    5.5 Adult Male Accessory Gland    59 Adult Carcass    52.2 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    146.9   NA  Eye    241.625   NA  Brain    411.4   190.45  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    320.8   NA  Crop    378.3   48.5  Midgut    60   98.6  Hindgut    285.6   142.8  Malpighian Tubules    81.8   39.5  Fat Body    65.8   69.5  Salivary Gland    211.9   NA  Heart    94.35   139.225  Trachea    NA   NA  VirginFemale Spermatheca    74.4   NA  InseminatedFemale Spermatheca    125   NA  Ovary    58   NA  Testis    5.5   NA  Male Accessory Gland    59   104.075  Carcass    52.2 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    17 central nervous system, pupae P8    51 head, virgin 1-day female    17 head, virgin 4-day female    18 head, virgin 20-day female    14 head, mated 1-day female    15 head, mated 4-day female    15 head, mated 20-day female    14 head, mated 1-day male    25 head, mated 4-day male    24 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    5 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    19 carcass, larvae L3 wandering    8 carcass, 1-day adult    6 carcass, 4-day adult    6 carcass, 20-day adult    6 ovary, virgin 4-day female    11 ovary, mated 4-day female    9 testis, mated 4-day male    0 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    17 central nervous system, pupae P8  (51) head, virgin 1-day female    17 head, virgin 4-day female    18 head, virgin 20-day female    14 head, mated 1-day female    15 head, mated 4-day female    15 head, mated 20-day female    14 head, mated 1-day male    25 head, mated 4-day male    24 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    5 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    19 carcass, larvae L3 wandering    8 carcass, 1-day adult    6 carcass, 4-day adult    6 carcass, 20-day adult    6 ovary, virgin 4-day female    11 ovary, mated 4-day female    9 testis, mated 4-day male    0 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    17 central nervous system, pupae P8    51 head, virgin 1-day female    17 head, virgin 4-day female    18 head, virgin 20-day female    14 head, mated 1-day female    15 head, mated 4-day female    15 head, mated 20-day female    14 head, mated 1-day male    25 head, mated 4-day male    24 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    5 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    19 carcass, larvae L3 wandering    8 carcass, 1-day adult    6 carcass, 4-day adult    6 carcass, 20-day adult    6 ovary, virgin 4-day female    11 ovary, mated 4-day female    9 testis, mated 4-day male    0 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    17 central nervous system, pupae P8    51 head, virgin 1-day female    17 head, virgin 4-day female    18 head, virgin 20-day female    14 head, mated 1-day female    15 head, mated 4-day female    15 head, mated 20-day female    14 head, mated 1-day male    25 head, mated 4-day male    24 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    5 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    19 carcass, larvae L3 wandering    8 carcass, 1-day adult    6 carcass, 4-day adult    6 carcass, 20-day adult    6 ovary, virgin 4-day female    11 ovary, mated 4-day female    9 testis, mated 4-day male    0 accessory gland, mated 4-day male    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    17 central nervous system, pupae P8    51 head, virgin 1-day female    17 head, virgin 4-day female    18 head, virgin 20-day female    14 head, mated 1-day female    15 head, mated 4-day female    15 head, mated 20-day female    14 head, mated 1-day male    25 head, mated 4-day male    24 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    5 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    19 carcass, larvae L3 wandering    8 carcass, 1-day adult    6 carcass, 4-day adult    6 carcass, 20-day adult    6 ovary, virgin 4-day female    11 ovary, mated 4-day female    9 testis, mated 4-day male    0 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    17 central nervous system, pupae P8  (51) head, virgin 1-day female    17 head, virgin 4-day female    18 head, virgin 20-day female    14 head, mated 1-day female    15 head, mated 4-day female    15 head, mated 20-day female    14 head, mated 1-day male    25 head, mated 4-day male    24 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    5 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    19 carcass, larvae L3 wandering    8 carcass, 1-day adult    6 carcass, 4-day adult    6 carcass, 20-day adult    6 ovary, virgin 4-day female    11 ovary, mated 4-day female    9 testis, mated 4-day male    0 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    17 central nervous system, pupae P8    51 head, virgin 1-day female    17 head, virgin 4-day female    18 head, virgin 20-day female    14 head, mated 1-day female    15 head, mated 4-day female    15 head, mated 20-day female    14 head, mated 1-day male    25 head, mated 4-day male    24 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    5 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    19 carcass, larvae L3 wandering    8 carcass, 1-day adult    6 carcass, 4-day adult    6 carcass, 20-day adult    6 ovary, virgin 4-day female    11 ovary, mated 4-day female    9 testis, mated 4-day male    0 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    17 central nervous system, pupae P8    51 head, virgin 1-day female    17 head, virgin 4-day female    18 head, virgin 20-day female    14 head, mated 1-day female    15 head, mated 4-day female    15 head, mated 20-day female    14 head, mated 1-day male    25 head, mated 4-day male    24 head, mated 20-day male    24 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    5 fat body, larvae L3 wandering    3 fat body, white prepupae    3 fat body, pupae P8    19 carcass, larvae L3 wandering    8 carcass, 1-day adult    6 carcass, 4-day adult    6 carcass, 20-day adult    6 ovary, virgin 4-day female    11 ovary, mated 4-day female    9 testis, mated 4-day male    0 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-06 and 12-24 hour embryonic stages, during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    14 embryo 02-04hr    12 embryo 04-06hr    23 embryo 06-08hr    17 embryo 08-10hr    15 embryo 10-12hr    17 embryo 12-14hr    16 embryo 14-16hr    25 embryo 16-18hr    23 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    19 larva L1    11 larva L2    6 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    8 white prepupae new    10 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    19 pupae 3d postWPP    18 pupae 4d postWPP    7 adult male 01day    9 adult male 05day    10 adult male 30day    10 adult female 01day    10 adult female 05day    12 adult female 30day    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    14 embryo 02-04hr    12 embryo 04-06hr    23 embryo 06-08hr    17 embryo 08-10hr    15 embryo 10-12hr    17 embryo 12-14hr    16 embryo 14-16hr    25 embryo 16-18hr    23 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    19 larva L1    11 larva L2    6 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    8 white prepupae new    10 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    19 pupae 3d postWPP    18 pupae 4d postWPP    7 adult male 01day    9 adult male 05day    10 adult male 30day    10 adult female 01day    10 adult female 05day    12 adult female 30day    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    14 embryo 02-04hr    12 embryo 04-06hr    23 embryo 06-08hr    17 embryo 08-10hr    15 embryo 10-12hr    17 embryo 12-14hr    16 embryo 14-16hr    25 embryo 16-18hr    23 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    19 larva L1    11 larva L2    6 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    8 white prepupae new    10 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    19 pupae 3d postWPP    18 pupae 4d postWPP    7 adult male 01day    9 adult male 05day    10 adult male 30day    10 adult female 01day    10 adult female 05day    12 adult female 30day    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    14 embryo 02-04hr    12 embryo 04-06hr    23 embryo 06-08hr    17 embryo 08-10hr    15 embryo 10-12hr    17 embryo 12-14hr    16 embryo 14-16hr    25 embryo 16-18hr    23 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    19 larva L1    11 larva L2    6 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    8 white prepupae new    10 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    19 pupae 3d postWPP    18 pupae 4d postWPP    7 adult male 01day    9 adult male 05day    10 adult male 30day    10 adult female 01day    10 adult female 05day    12 adult female 30day    12 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    14 embryo 02-04hr    12 embryo 04-06hr    23 embryo 06-08hr    17 embryo 08-10hr    15 embryo 10-12hr    17 embryo 12-14hr    16 embryo 14-16hr    25 embryo 16-18hr    23 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    19 larva L1    11 larva L2    6 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    8 white prepupae new    10 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    19 pupae 3d postWPP    18 pupae 4d postWPP    7 adult male 01day    9 adult male 05day    10 adult male 30day    10 adult female 01day    10 adult female 05day    12 adult female 30day    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    14 embryo 02-04hr    12 embryo 04-06hr    23 embryo 06-08hr    17 embryo 08-10hr    15 embryo 10-12hr    17 embryo 12-14hr    16 embryo 14-16hr    25 embryo 16-18hr    23 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    19 larva L1    11 larva L2    6 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    8 white prepupae new    10 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    19 pupae 3d postWPP    18 pupae 4d postWPP    7 adult male 01day    9 adult male 05day    10 adult male 30day    10 adult female 01day    10 adult female 05day    12 adult female 30day    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    14 embryo 02-04hr    12 embryo 04-06hr    23 embryo 06-08hr    17 embryo 08-10hr    15 embryo 10-12hr    17 embryo 12-14hr    16 embryo 14-16hr    25 embryo 16-18hr    23 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    19 larva L1    11 larva L2    6 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    8 white prepupae new    10 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    19 pupae 3d postWPP    18 pupae 4d postWPP    7 adult male 01day    9 adult male 05day    10 adult male 30day    10 adult female 01day    10 adult female 05day    12 adult female 30day    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    14 embryo 02-04hr    12 embryo 04-06hr    23 embryo 06-08hr    17 embryo 08-10hr    15 embryo 10-12hr    17 embryo 12-14hr    16 embryo 14-16hr    25 embryo 16-18hr    23 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    19 larva L1    11 larva L2    6 larva L3 12hr old    7 larva L3 puffstage 1-2    6 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    8 white prepupae new    10 white prepupae 12hr    18 white prepupae 24hr    21 pupae 2d postWPP    19 pupae 3d postWPP    18 pupae 4d postWPP    7 adult male 01day    9 adult male 05day    10 adult male 30day    10 adult female 01day    10 adult female 05day    12 adult female 30day    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    3 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    8 embryonic S1    4 embryonic S3    4 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    4 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    3 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    4 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    6 ovary fGS/OSS    17 ovary OSC    5 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    3 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    8 embryonic S1    4 embryonic S3    4 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    4 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    3 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    4 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    6 ovary fGS/OSS    17 ovary OSC    5 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    3 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    8 embryonic S1    4 embryonic S3    4 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    4 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    3 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    4 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    6 ovary fGS/OSS    17 ovary OSC    5 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    3 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    8 embryonic S1    4 embryonic S3    4 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    4 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    3 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    4 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    6 ovary fGS/OSS    17 ovary OSC    5 ovary OSS    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    3 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    8 embryonic S1    4 embryonic S3    4 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    4 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    3 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    4 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    6 ovary fGS/OSS    17 ovary OSC    5 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    3 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    8 embryonic S1    4 embryonic S3    4 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    4 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    3 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    4 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    6 ovary fGS/OSS    17 ovary OSC    5 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    3 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    8 embryonic S1    4 embryonic S3    4 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    4 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    3 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    4 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    6 ovary fGS/OSS    17 ovary OSC    5 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    3 embryonic 1182-4H    5 embryonic GM2    7 embryonic Kc167    8 embryonic S1    4 embryonic S3    4 leg disc CME L1    2 wing disc CME-W2    4 wing disc ML-DmD8    4 wing disc ML-DmD9    3 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    3 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    4 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    6 ovary fGS/OSS    17 ovary OSC    5 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    4 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    12 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    4 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    12 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    4 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    12 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    4 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    12 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    4 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    12 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    4 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    12 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    4 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    12 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    4 heat shock, 4-day adult    6 Cadmium 50 mM 6 hrs, larvae L3    5 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    12 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    16 Ethanol 2.5% 3 hrs, larvae L3    10 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    7 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    9 Paraquat 10 mM 48 hrs, 4-day adult    12 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_27 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033739 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8529-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 DybGD13953 Phenotype manifest in Allele
Classical Alleles ( 4 )
For All Classical Alleles Show
Allele of Dyb Class Mutagen Stocks Known lesion Dybd02413 P-element activity 1 -- Dybe02964 1 -- DybEY01099 P-element activity 1 -- DybG13355 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Dyb Class Mutagen Stocks Known lesion DybGD13953 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes DybHM05271 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes DybHMS00728 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes DybKK109268 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes DybNIG.8529R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)achi4 (Ayyar et al., 2003)
Not disrupted in	Df(2R)achi2 (Ayyar et al., 2003) Df(2R)achi3 (Ayyar et al., 2003)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD13953} NA P{KK109268} NA P{NIG.8529R} NA P{TRiP.HM05271} NA P{TRiP.HMS00728} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}DybG13355 NA P{EPgy2}DybEY01099 NA P{XP}Dybd02413 NA miscellaneous insertions PBac{RB}Dybe02964 NA
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 6 terms )
Molecular Function
CV term Evidence References
calcium ion binding inferred from electronic annotation with InterPro:IPR011992 (FlyBase Curators et al., 2004-) cytoskeletal protein binding inferred from sequence or structural similarity (Goldstein and Gunawardena, 2000) structural constituent of muscle inferred from sequence or structural similarity with human DTNA (Greener and Roberts, 2000) zinc ion binding inferred from electronic annotation with InterPro:IPR000433 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
dystrobrevin complex inferred from sequence or structural similarity (Goldstein and Gunawardena, 2000) non-traceable author statement (Greener, 2000.6.14) dystrophin-associated glycoprotein complex inferred from sequence or structural similarity with human DTNA AND inferred from sequence or structural similarity with human DTNB (Greener and Roberts, 2000)
Sequence Ontology: Class of Gene
	gene_with_edited_transcript (Graveley et al., 2011) nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Dyb allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 62139 DroID - A comprehensive database of gene and protein interactions. • FBgn0033739 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36362
Orthologs
OrthoDB Orthologs (45) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6RJGM2 Dipteran inclusive ortholog search EOG6MCX7G Insect inclusive ortholog search EOG6JM6JQ Arthropod inclusive ortholog search EOG6X3FGC Metazoa inclusive ortholog search EOG6VB6HV
Orthologs in Drosophila Species (EOG6RJGM2)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Dyb     Drosophila simulans   Dsim\GD10888 Y   Drosophila sechellia   Dsec\GM21392 Y   Drosophila erecta   Dere\GG20305 Y   Drosophila yakuba   Dyak\GE12465 Y   Drosophila ananassae   Dana\GF12513 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA21140 Y   Drosophila persimilis   Dper\GL17134 Y   Drosophila willistoni   Dwil\GK22187 Y   Drosophila virilis   Dvir\GJ15037 Y   Drosophila mojavensis   Dmoj\GI19671 Y   Drosophila grimshawi   Dgri\GH21967 Y
Orthologs in non-Drosophila Dipterans (EOG6MCX7G)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL005343   Anopheles gambiae Malaria mosquito  Agam\AGAP013170   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ002047
Orthologs in non-Dipteran Insects (EOG6JM6JQ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB52195   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG014819   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH17089   Atta cephalotes Leafcutter ant  Acep\ACEP24315   Camponotus floridanus Florida carpenter ant  Cflo\CFLO16887   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL21126   Linepithema humile Argentine ant  Lhum\LH15579   Pogonomyrmex barbatus Red harvester ant  Pbar\PB26504   Solenopsis invicta Red fire ant  Sinv\SINV14469   Acyrthosiphon pisum Pea aphid  Apim\ACYPI004240   Tribolium castaneum Red flour beetle  Tcas\TC013262
Orthologs in non-Insect Arthropods (EOG6X3FGC)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_319426   Ixodes scapularis Deer tick  Isca\ISCW003640   Ixodes scapularis Deer tick  Isca\ISCW008000   Ixodes scapularis Deer tick  Isca\ISCW003569
Orthologs in non-Arthropod Metazoa (EOG6VB6HV)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\dyb-1   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_016190gn   Danio rerio Zebrafish  Drer\dtnb   Danio rerio Zebrafish  Drer\ENSDARG00000077694   Danio rerio Zebrafish  Drer\ENSDARG00000037388   Danio rerio Zebrafish  Drer\dtna   Xenopus tropicalis Western clawed frog  Xtro\dtnb   Gallus gallus Domestic chicken  Ggal\DTNB   Gallus gallus Domestic chicken  Ggal\DTNA   Mus musculus House mouse  Mmus\ENSMUSG00000071454   Mus musculus House mouse  Mmus\Dtna   Rattus norvegicus Norway rat  Rnor\Dtnb   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000016671   Homo sapiens Human  Hsap\DTNB   Homo sapiens Human  Hsap\DTNA
Human Orthologs (2)
Gene OMIM HGNC Hsap\DTNB     Hsap\DTNA
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD10888 Drosophila sechellia Dsec\GM21392 Drosophila erecta Dere\GG20305 Drosophila yakuba Dyak\GE12465 Drosophila ananassae Dana\GF12513 Drosophila pseudoobscura pseudoobscura Dpse\GA21140 Drosophila persimilis Dper\GL17134 Drosophila willistoni Dwil\GK22187 Drosophila virilis Dvir\GJ15037 Drosophila mojavensis Dmoj\GI19671 Drosophila grimshawi Dgri\GH21967
Stocks & Reagents
Stocks Listed in FlyBase ( 8 )
Bloomington	28398 y1 w*; P{EP}DybG13355 15494 y1 w67c23; P{EPgy2}DybEY01099 36101 y1 sc* v1; P{TRiP.HM05271}attP2 32935 y1 sc* v1; P{TRiP.HMS00728}attP2
Harvard	- P{XP}Dybd02413 - PBac{RB}Dybe02964
VDRC	v104485 P{KK109268}VIE-260B v44360 w1118 P{GD13953}v44360
Genomic Clones ( 2 )
	BACR24H09 BACR37P06 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 86 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE48865 RE72451 SD07514 SD14515
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	HL01676 LP05577 LP06650 LP17687 RE05988 RE17119 RE20937 RE28183 RE34824 RE42086 RE47704 RE65101 RE65117 RE65120 RE66296
Other clones	8988 11561 28060 30448 42180 44623 56372 61154 64178 77069 80931 97951 100995 118198 152902 CK01.8C.B10 CK01.14C.D6 CK01.64A.H8 CK01.105B.G6 CK01.147C.F10 Dmel_neb_013882_0123_1176 EK011337 EK014936 EK064661 EK088045 EK107762 EK120953 EK135542 EK139551 EK160115 EK167618 EK186118 EK214257 EK214403 EK223712 EK224121 EK235743 EK248225 EK256649 GH13689 LP09909 RP004010503 RP004119458 RP004121579 RP004141173 RP004147351 RP004174546 RP004190351 RP004202515 RP004208164 RP004217185 RP004221301 RP004228282 RP004240845 RP004243881 RP004254915 RP004266123 RP004363008 RP004416050 RP004427888 RP004430303 RP004444310 RP004445193 RP004460637 RP004507240 RP004528927 RP004552560
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0033739 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36362
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Dyb CG8529 (FlyBase, 1996-)
Source for database merge of
Additional comments	Source for identity of Dyb CG8529 was sequence comparison (date:001003). (FlyBase, 1996-)
Other Comments
	dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology. (Kiger et al., 2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_078988 NM_165904 NM_165905 NM_001032236 NM_001032237 NM_001103817 NM_001259351 RefSeq (Proteins) • NP_523712 NP_725171 NP_725172 NP_001027407 NP_001027408 NP_001097287 NP_001246280 DDBJ / EMBL / GenBank • AAF58507 AAF58507.2 AAG17396 AAL25518 AAM68687 AAM68687.1 AAM68688 AAM68688.1 AAM68688.2 AAZ52815 AAZ52816 ABV53778 AF277387 AFH08034 AI534604 AW944506 AY060479 BI363891 CZ472797 CZ472798 Entrez Gene - A searchable database of RefSeq genes. • 36362 UniProtKB/TrEMBL • A1Z904 A1Z906 A1Z907 A8DYB7 Q0E9B2 Q9GT70 Q95SU4
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, ZZ-type (IPR000433) EF-hand domain, type 1 (IPR015153) EF-hand domain, type 2 (IPR015154) Distrobrevin (IPR017432) EF-hand-like domain (IPR011992)
Linkouts
	BioGRID - A database of protein and genetic interactions • 62139 DroID - A comprehensive database of gene and protein interactions. • FBgn0033739 DRSC - Results from RNAi screens. • FBgn0033739 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033739 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8529-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0033739 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36362 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36362 modMine - Data generated by the modENCODE project. • FBgn0033739
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	CG8529 (Ni et al., 2008, Dekkers et al., 2004, Goldstein and Gunawardena, 2000, Goldstein and Gunawardena, 2000, Keleman et al., 2009.8.5, Chen et al., 2008, Ni et al., 2010.12.1, Puri et al., 2008) DmDYB (Greener and Roberts, 2000) Dyb (Bakal et al., 2007, Ranade et al., 2008, Chen et al., 2008, Buffin and Gho, 2010, Wasbrough et al., 2010, Puri et al., 2008, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym	Dystrobrevin-like (Greener, 2000.6.14, Buffin and Gho, 2010)
Secondary FlyBase IDs
References ( 35 )
Generate a list of	All references relating to this gene ( 35 )
List References by type	Research paper  ( 8 ) Supplementary material  ( 10 ) Review  ( 2 ) Personal communication to FlyBase  ( 8 ) FlyBase analysis  ( 3 ) DNA/RNA sequence record  ( 1 ) Stock list  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...