Gene Dmel\CG6701

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General Information

Symbol

Dmel\CG6701

Species

D. melanogaster

Name

Annotation symbol

CG6701

Feature type

protein_coding_gene

FlyBase ID

FBgn0033889

Gene Model Status

Current

Stock availability

7 publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

50C22-50C23

Sequence location

2R:9,860,489..9,867,670 [-]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG6701 (FBgn0033889). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: zinc ion binding. The biological processes in which it is involved are not known. 11 alleles are reported. The phenotypes of these alleles are annotated with: eye; wing. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: Zinc finger, C2H2; Zinc finger, C2H2-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1635737_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG6701. Gene sequence location is 2R:9860489..9867670.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

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Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

50C22-50C23

Limits computationally determined from genome sequence between P{lacW}Cp1^k15819&P{EP}CG6701^EP2054 and P{lacW}mam^k05821

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG6701 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.50

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG6701-RB

FBtr0303989

NM_001201994

4934

1333

CG6701-RC

FBtr0303990

NM_001201995

5354

1333

CG6701-RD

FBtr0303991

NM_137076

4887

1333

CG6701-RE

FBtr0339957

5083

1333

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG6701-PB

FBpp0292958

151.1

1333

9.32

NP_001188923

AAF58307

CG6701-PC

FBpp0292959

151.1

1333

9.32

NP_001188924

ADV37170

CG6701-PD

FBpp0292960

151.1

1333

9.32

NP_610920

AAM68567

CG6701-PE

FBpp0308979

151.1

1333

9.32

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Zinc finger, C2H2 (IPR007087)

P-loop containing nucleoside triphosphate hydrolase (IPR027417)

Zinc finger, C2H2-like (IPR015880)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		67.925
Larval Midgut		228.1
Larval Hindgut		179.4
Larval Malpighian Tubules		279.8
Larval Fat Body		265.6
Larval Salivary Gland		166.4
Larval Trachea		229.275
Larval Carcass		189.45
Adult Head		131.1
Adult Eye		111.575
Adult Brain		55.6
Adult Thoracic-Abdominal Ganglion		83
Adult Crop		174.5
Adult Midgut		210.2
Adult Hindgut		166.8
Adult Malpighian Tubules		97
Adult Fat Body		175.5
Adult Salivary Gland		238.8
Adult Heart		148.5
Adult VirginFemale Spermatheca		296.7
Adult InseminatedFemale Spermatheca		242.2
Adult Ovary		352
Adult Testis		431.3
Adult Male Accessory Gland		178.4
Adult Carcass		141.9
Expression Level Scale		None Low Moderate

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		67.925
Larval Midgut		228.1
Larval Hindgut		179.4
Larval Malpighian Tubules		279.8
Larval Fat Body		265.6
Larval Salivary Gland		166.4
Larval Trachea		229.275
Larval Carcass		189.45
Adult Head		131.1
Adult Eye		111.575
Adult Brain		55.6
Adult Thoracic-Abdominal Ganglion		83
Adult Crop		174.5
Adult Midgut		210.2
Adult Hindgut		166.8
Adult Malpighian Tubules		97
Adult Fat Body		175.5
Adult Salivary Gland		238.8
Adult Heart		148.5
Adult VirginFemale Spermatheca		296.7
Adult InseminatedFemale Spermatheca		242.2
Adult Ovary		352
Adult Testis		431.3
Adult Male Accessory Gland		178.4
Adult Carcass		141.9
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		67.925
Larval Midgut		228.1
Larval Hindgut		179.4
Larval Malpighian Tubules		279.8
Larval Fat Body		265.6
Larval Salivary Gland		166.4
Larval Trachea		229.275
Larval Carcass		189.45
Adult Head		131.1
Adult Eye		111.575
Adult Brain		55.6
Adult Thoracic-Abdominal Ganglion		83
Adult Crop		174.5
Adult Midgut		210.2
Adult Hindgut		166.8
Adult Malpighian Tubules		97
Adult Fat Body		175.5
Adult Salivary Gland		238.8
Adult Heart		148.5
Adult VirginFemale Spermatheca		296.7
Adult InseminatedFemale Spermatheca		242.2
Adult Ovary		352
Adult Testis		431.3
Adult Male Accessory Gland		178.4
Adult Carcass		141.9
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		67.925
Larval Midgut		228.1
Larval Hindgut		179.4
Larval Malpighian Tubules		279.8
Larval Fat Body		265.6
Larval Salivary Gland		166.4
Larval Trachea		229.275
Larval Carcass		189.45
Adult Head		131.1
Adult Eye		111.575
Adult Brain		55.6
Adult Thoracic-Abdominal Ganglion		83
Adult Crop		174.5
Adult Midgut		210.2
Adult Hindgut		166.8
Adult Malpighian Tubules		97
Adult Fat Body		175.5
Adult Salivary Gland		238.8
Adult Heart		148.5
Adult VirginFemale Spermatheca		296.7
Adult InseminatedFemale Spermatheca		242.2
Adult Ovary		352
Adult Testis		431.3
Adult Male Accessory Gland		178.4
Adult Carcass		141.9
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		67.925
Larval Midgut		228.1
Larval Hindgut		179.4
Larval Malpighian Tubules		279.8
Larval Fat Body		265.6
Larval Salivary Gland		166.4
Larval Trachea		229.275
Larval Carcass		189.45
Adult Head		131.1
Adult Eye		111.575
Adult Brain		55.6
Adult Thoracic-Abdominal Ganglion		83
Adult Crop		174.5
Adult Midgut		210.2
Adult Hindgut		166.8
Adult Malpighian Tubules		97
Adult Fat Body		175.5
Adult Salivary Gland		238.8
Adult Heart		148.5
Adult VirginFemale Spermatheca		296.7
Adult InseminatedFemale Spermatheca		242.2
Adult Ovary		352
Adult Testis		431.3
Adult Male Accessory Gland		178.4
Adult Carcass		141.9
Expression Level Scale		None Low Moderate High

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		67.925
Larval Midgut		228.1
Larval Hindgut		179.4
Larval Malpighian Tubules		279.8
Larval Fat Body		265.6
Larval Salivary Gland		166.4
Larval Trachea		229.275
Larval Carcass		189.45
Adult Head		131.1
Adult Eye		111.575
Adult Brain		55.6
Adult Thoracic-Abdominal Ganglion		83
Adult Crop		174.5
Adult Midgut		210.2
Adult Hindgut		166.8
Adult Malpighian Tubules		97
Adult Fat Body		175.5
Adult Salivary Gland		238.8
Adult Heart		148.5
Adult VirginFemale Spermatheca		296.7
Adult InseminatedFemale Spermatheca		242.2
Adult Ovary		352
Adult Testis		431.3
Adult Male Accessory Gland		178.4
Adult Carcass		141.9
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		67.925
Larval Midgut		228.1
Larval Hindgut		179.4
Larval Malpighian Tubules		279.8
Larval Fat Body		265.6
Larval Salivary Gland		166.4
Larval Trachea		229.275
Larval Carcass		189.45
Adult Head		131.1
Adult Eye		111.575
Adult Brain		55.6
Adult Thoracic-Abdominal Ganglion		83
Adult Crop		174.5
Adult Midgut		210.2
Adult Hindgut		166.8
Adult Malpighian Tubules		97
Adult Fat Body		175.5
Adult Salivary Gland		238.8
Adult Heart		148.5
Adult VirginFemale Spermatheca		296.7
Adult InseminatedFemale Spermatheca		242.2
Adult Ovary		352
Adult Testis		431.3
Adult Male Accessory Gland		178.4
Adult Carcass		141.9
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		67.925
Larval Midgut		228.1
Larval Hindgut		179.4
Larval Malpighian Tubules		279.8
Larval Fat Body		265.6
Larval Salivary Gland		166.4
Larval Trachea		229.275
Larval Carcass		189.45
Adult Head		131.1
Adult Eye		111.575
Adult Brain		55.6
Adult Thoracic-Abdominal Ganglion		83
Adult Crop		174.5
Adult Midgut		210.2
Adult Hindgut		166.8
Adult Malpighian Tubules		97
Adult Fat Body		175.5
Adult Salivary Gland		238.8
Adult Heart		148.5
Adult VirginFemale Spermatheca		296.7
Adult InseminatedFemale Spermatheca		242.2
Adult Ovary		352
Adult Testis		431.3
Adult Male Accessory Gland		178.4
Adult Carcass		141.9
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	131.1
NA	Eye	111.575
NA	Brain	55.6
67.925	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	83
NA	Crop	174.5
228.1	Midgut	210.2
179.4	Hindgut	166.8
279.8	Malpighian Tubules	97
265.6	Fat Body	175.5
166.4	Salivary Gland	238.8
NA	Heart	148.5
229.275	Trachea	NA
NA	VirginFemale Spermatheca	296.7
NA	InseminatedFemale Spermatheca	242.2
NA	Ovary	352
NA	Testis	431.3
NA	Male Accessory Gland	178.4
189.45	Carcass	141.9

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		20
central nervous system, larvae L3		8
central nervous system, pupae P8		3
head, virgin 1-day female		9
head, virgin 4-day female		9
head, virgin 20-day female		11
head, mated 1-day female		7
head, mated 4-day female		7
head, mated 20-day female		9
head, mated 1-day male		10
head, mated 4-day male		11
head, mated 20-day male		16
salivary gland, larvae L3 wandering		8
salivary gland, white prepupae		44
digestive system, larvae L3 wandering		27
digestive system, 1-day adult		12
digestive system, 4-day adult		16
digestive system, 20-day adult		17
fat body, larvae L3 wandering		14
fat body, white prepupae		25
fat body, pupae P8		13
carcass, larvae L3 wandering		13
carcass, 1-day adult		9
carcass, 4-day adult		10
carcass, 20-day adult		13
ovary, virgin 4-day female		65
ovary, mated 4-day female		50
testis, mated 4-day male		38
accessory gland, mated 4-day male		13
Expression Level Scale		Very low Low Moderate Moderately high High

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		20
central nervous system, larvae L3		8
central nervous system, pupae P8		3
head, virgin 1-day female		9
head, virgin 4-day female		9
head, virgin 20-day female		11
head, mated 1-day female		7
head, mated 4-day female		7
head, mated 20-day female		9
head, mated 1-day male		10
head, mated 4-day male		11
head, mated 20-day male		16
salivary gland, larvae L3 wandering		8
salivary gland, white prepupae		(44)
digestive system, larvae L3 wandering		(27)
digestive system, 1-day adult		12
digestive system, 4-day adult		16
digestive system, 20-day adult		17
fat body, larvae L3 wandering		14
fat body, white prepupae		25
fat body, pupae P8		13
carcass, larvae L3 wandering		13
carcass, 1-day adult		9
carcass, 4-day adult		10
carcass, 20-day adult		13
ovary, virgin 4-day female		(65)
ovary, mated 4-day female		(50)
testis, mated 4-day male		(38)
accessory gland, mated 4-day male		13
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		20
central nervous system, larvae L3		8
central nervous system, pupae P8		3
head, virgin 1-day female		9
head, virgin 4-day female		9
head, virgin 20-day female		11
head, mated 1-day female		7
head, mated 4-day female		7
head, mated 20-day female		9
head, mated 1-day male		10
head, mated 4-day male		11
head, mated 20-day male		16
salivary gland, larvae L3 wandering		8
salivary gland, white prepupae		44
digestive system, larvae L3 wandering		27
digestive system, 1-day adult		12
digestive system, 4-day adult		16
digestive system, 20-day adult		17
fat body, larvae L3 wandering		14
fat body, white prepupae		25
fat body, pupae P8		13
carcass, larvae L3 wandering		13
carcass, 1-day adult		9
carcass, 4-day adult		10
carcass, 20-day adult		13
ovary, virgin 4-day female		65
ovary, mated 4-day female		50
testis, mated 4-day male		38
accessory gland, mated 4-day male		13
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		20
central nervous system, larvae L3		8
central nervous system, pupae P8		3
head, virgin 1-day female		9
head, virgin 4-day female		9
head, virgin 20-day female		11
head, mated 1-day female		7
head, mated 4-day female		7
head, mated 20-day female		9
head, mated 1-day male		10
head, mated 4-day male		11
head, mated 20-day male		16
salivary gland, larvae L3 wandering		8
salivary gland, white prepupae		44
digestive system, larvae L3 wandering		27
digestive system, 1-day adult		12
digestive system, 4-day adult		16
digestive system, 20-day adult		17
fat body, larvae L3 wandering		14
fat body, white prepupae		25
fat body, pupae P8		13
carcass, larvae L3 wandering		13
carcass, 1-day adult		9
carcass, 4-day adult		10
carcass, 20-day adult		13
ovary, virgin 4-day female		65
ovary, mated 4-day female		50
testis, mated 4-day male		38
accessory gland, mated 4-day male		13
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		20
central nervous system, larvae L3		8
central nervous system, pupae P8		3
head, virgin 1-day female		9
head, virgin 4-day female		9
head, virgin 20-day female		11
head, mated 1-day female		7
head, mated 4-day female		7
head, mated 20-day female		9
head, mated 1-day male		10
head, mated 4-day male		11
head, mated 20-day male		16
salivary gland, larvae L3 wandering		8
salivary gland, white prepupae		44
digestive system, larvae L3 wandering		27
digestive system, 1-day adult		12
digestive system, 4-day adult		16
digestive system, 20-day adult		17
fat body, larvae L3 wandering		14
fat body, white prepupae		25
fat body, pupae P8		13
carcass, larvae L3 wandering		13
carcass, 1-day adult		9
carcass, 4-day adult		10
carcass, 20-day adult		13
ovary, virgin 4-day female		65
ovary, mated 4-day female		50
testis, mated 4-day male		38
accessory gland, mated 4-day male		13
Expression Level Scale		Very low Low Moderate Moderately high High

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		20
central nervous system, larvae L3		8
central nervous system, pupae P8		3
head, virgin 1-day female		9
head, virgin 4-day female		9
head, virgin 20-day female		11
head, mated 1-day female		7
head, mated 4-day female		7
head, mated 20-day female		9
head, mated 1-day male		10
head, mated 4-day male		11
head, mated 20-day male		16
salivary gland, larvae L3 wandering		8
salivary gland, white prepupae		(44)
digestive system, larvae L3 wandering		27
digestive system, 1-day adult		12
digestive system, 4-day adult		16
digestive system, 20-day adult		17
fat body, larvae L3 wandering		14
fat body, white prepupae		25
fat body, pupae P8		13
carcass, larvae L3 wandering		13
carcass, 1-day adult		9
carcass, 4-day adult		10
carcass, 20-day adult		13
ovary, virgin 4-day female		(65)
ovary, mated 4-day female		(50)
testis, mated 4-day male		(38)
accessory gland, mated 4-day male		13
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		20
central nervous system, larvae L3		8
central nervous system, pupae P8		3
head, virgin 1-day female		9
head, virgin 4-day female		9
head, virgin 20-day female		11
head, mated 1-day female		7
head, mated 4-day female		7
head, mated 20-day female		9
head, mated 1-day male		10
head, mated 4-day male		11
head, mated 20-day male		16
salivary gland, larvae L3 wandering		8
salivary gland, white prepupae		44
digestive system, larvae L3 wandering		27
digestive system, 1-day adult		12
digestive system, 4-day adult		16
digestive system, 20-day adult		17
fat body, larvae L3 wandering		14
fat body, white prepupae		25
fat body, pupae P8		13
carcass, larvae L3 wandering		13
carcass, 1-day adult		9
carcass, 4-day adult		10
carcass, 20-day adult		13
ovary, virgin 4-day female		65
ovary, mated 4-day female		50
testis, mated 4-day male		38
accessory gland, mated 4-day male		13
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		20
central nervous system, larvae L3		8
central nervous system, pupae P8		3
head, virgin 1-day female		9
head, virgin 4-day female		9
head, virgin 20-day female		11
head, mated 1-day female		7
head, mated 4-day female		7
head, mated 20-day female		9
head, mated 1-day male		10
head, mated 4-day male		11
head, mated 20-day male		16
salivary gland, larvae L3 wandering		8
salivary gland, white prepupae		44
digestive system, larvae L3 wandering		27
digestive system, 1-day adult		12
digestive system, 4-day adult		16
digestive system, 20-day adult		17
fat body, larvae L3 wandering		14
fat body, white prepupae		25
fat body, pupae P8		13
carcass, larvae L3 wandering		13
carcass, 1-day adult		9
carcass, 4-day adult		10
carcass, 20-day adult		13
ovary, virgin 4-day female		65
ovary, mated 4-day female		50
testis, mated 4-day male		38
accessory gland, mated 4-day male		13
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		44
embryo 02-04hr		51
embryo 04-06hr		43
embryo 06-08hr		44
embryo 08-10hr		40
embryo 10-12hr		22
embryo 12-14hr		23
embryo 14-16hr		14
embryo 16-18hr		10
embryo 18-20hr		5
embryo 20-22hr		9
embryo 22-24hr		11
larva L1		3
larva L2		5
larva L3 12hr old		7
larva L3 puffstage 1-2		14
larva L3 puffstage 3-6		19
larva L3 puffstage 7-9		24
white prepupae new		26
white prepupae 12hr		45
white prepupae 24hr		41
pupae 2d postWPP		24
pupae 3d postWPP		14
pupae 4d postWPP		13
adult male 01day		22
adult male 05day		27
adult male 30day		25
adult female 01day		18
adult female 05day		37
adult female 30day		33
Expression Level Scale		Very low Low Moderate Moderately high High

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		(44)
embryo 02-04hr		(51)
embryo 04-06hr		(43)
embryo 06-08hr		(44)
embryo 08-10hr		(40)
embryo 10-12hr		22
embryo 12-14hr		23
embryo 14-16hr		14
embryo 16-18hr		10
embryo 18-20hr		5
embryo 20-22hr		9
embryo 22-24hr		11
larva L1		3
larva L2		5
larva L3 12hr old		7
larva L3 puffstage 1-2		14
larva L3 puffstage 3-6		19
larva L3 puffstage 7-9		24
white prepupae new		26
white prepupae 12hr		(45)
white prepupae 24hr		(41)
pupae 2d postWPP		24
pupae 3d postWPP		14
pupae 4d postWPP		13
adult male 01day		22
adult male 05day		(27)
adult male 30day		25
adult female 01day		18
adult female 05day		(37)
adult female 30day		(33)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		44
embryo 02-04hr		51
embryo 04-06hr		43
embryo 06-08hr		44
embryo 08-10hr		40
embryo 10-12hr		22
embryo 12-14hr		23
embryo 14-16hr		14
embryo 16-18hr		10
embryo 18-20hr		5
embryo 20-22hr		9
embryo 22-24hr		11
larva L1		3
larva L2		5
larva L3 12hr old		7
larva L3 puffstage 1-2		14
larva L3 puffstage 3-6		19
larva L3 puffstage 7-9		24
white prepupae new		26
white prepupae 12hr		45
white prepupae 24hr		41
pupae 2d postWPP		24
pupae 3d postWPP		14
pupae 4d postWPP		13
adult male 01day		22
adult male 05day		27
adult male 30day		25
adult female 01day		18
adult female 05day		37
adult female 30day		33
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		44
embryo 02-04hr		51
embryo 04-06hr		43
embryo 06-08hr		44
embryo 08-10hr		40
embryo 10-12hr		22
embryo 12-14hr		23
embryo 14-16hr		14
embryo 16-18hr		10
embryo 18-20hr		5
embryo 20-22hr		9
embryo 22-24hr		11
larva L1		3
larva L2		5
larva L3 12hr old		7
larva L3 puffstage 1-2		14
larva L3 puffstage 3-6		19
larva L3 puffstage 7-9		24
white prepupae new		26
white prepupae 12hr		45
white prepupae 24hr		41
pupae 2d postWPP		24
pupae 3d postWPP		14
pupae 4d postWPP		13
adult male 01day		22
adult male 05day		27
adult male 30day		25
adult female 01day		18
adult female 05day		37
adult female 30day		33
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		44
embryo 02-04hr		51
embryo 04-06hr		43
embryo 06-08hr		44
embryo 08-10hr		40
embryo 10-12hr		22
embryo 12-14hr		23
embryo 14-16hr		14
embryo 16-18hr		10
embryo 18-20hr		5
embryo 20-22hr		9
embryo 22-24hr		11
larva L1		3
larva L2		5
larva L3 12hr old		7
larva L3 puffstage 1-2		14
larva L3 puffstage 3-6		19
larva L3 puffstage 7-9		24
white prepupae new		26
white prepupae 12hr		45
white prepupae 24hr		41
pupae 2d postWPP		24
pupae 3d postWPP		14
pupae 4d postWPP		13
adult male 01day		22
adult male 05day		27
adult male 30day		25
adult female 01day		18
adult female 05day		37
adult female 30day		33
Expression Level Scale		Very low Low Moderate Moderately high High

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		(44)
embryo 02-04hr		(51)
embryo 04-06hr		(43)
embryo 06-08hr		(44)
embryo 08-10hr		(40)
embryo 10-12hr		22
embryo 12-14hr		23
embryo 14-16hr		14
embryo 16-18hr		10
embryo 18-20hr		5
embryo 20-22hr		9
embryo 22-24hr		11
larva L1		3
larva L2		5
larva L3 12hr old		7
larva L3 puffstage 1-2		14
larva L3 puffstage 3-6		19
larva L3 puffstage 7-9		24
white prepupae new		26
white prepupae 12hr		(45)
white prepupae 24hr		(41)
pupae 2d postWPP		24
pupae 3d postWPP		14
pupae 4d postWPP		13
adult male 01day		22
adult male 05day		27
adult male 30day		25
adult female 01day		18
adult female 05day		(37)
adult female 30day		(33)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		44
embryo 02-04hr		51
embryo 04-06hr		43
embryo 06-08hr		44
embryo 08-10hr		40
embryo 10-12hr		22
embryo 12-14hr		23
embryo 14-16hr		14
embryo 16-18hr		10
embryo 18-20hr		5
embryo 20-22hr		9
embryo 22-24hr		11
larva L1		3
larva L2		5
larva L3 12hr old		7
larva L3 puffstage 1-2		14
larva L3 puffstage 3-6		19
larva L3 puffstage 7-9		24
white prepupae new		26
white prepupae 12hr		45
white prepupae 24hr		41
pupae 2d postWPP		24
pupae 3d postWPP		14
pupae 4d postWPP		13
adult male 01day		22
adult male 05day		27
adult male 30day		25
adult female 01day		18
adult female 05day		37
adult female 30day		33
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		44
embryo 02-04hr		51
embryo 04-06hr		43
embryo 06-08hr		44
embryo 08-10hr		40
embryo 10-12hr		22
embryo 12-14hr		23
embryo 14-16hr		14
embryo 16-18hr		10
embryo 18-20hr		5
embryo 20-22hr		9
embryo 22-24hr		11
larva L1		3
larva L2		5
larva L3 12hr old		7
larva L3 puffstage 1-2		14
larva L3 puffstage 3-6		19
larva L3 puffstage 7-9		24
white prepupae new		26
white prepupae 12hr		45
white prepupae 24hr		41
pupae 2d postWPP		24
pupae 3d postWPP		14
pupae 4d postWPP		13
adult male 01day		22
adult male 05day		27
adult male 30day		25
adult female 01day		18
adult female 05day		37
adult female 30day		33
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		103
Schneider line 2 Sg4		28
embryonic 1182-4H		39
embryonic GM2		94
embryonic Kc167		39
embryonic S1		80
embryonic S3		43
leg disc CME L1		37
wing disc CME-W2		66
wing disc ML-DmD8		59
wing disc ML-DmD9		43
wing disc ML-DmD16-c3		44
wing disc ML-DmD21		15
wing disc ML-DmD32		33
haltere disc ML-DmD17-c3		26
eye-antennal disc ML-DmD11		55
antennal disc ML-DmD20-c5		33
mixed discs ML-DmD4-c1		34
CNS ML-DmBG1-c1		86
CNS ML-DmBG2-c2		111
tumorous blood cells mbn2		62
ovary fGS/OSS		81
ovary OSC		85
ovary OSS		46
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		(103)
Schneider line 2 Sg4		(28)
embryonic 1182-4H		(39)
embryonic GM2		(94)
embryonic Kc167		(39)
embryonic S1		(80)
embryonic S3		(43)
leg disc CME L1		(37)
wing disc CME-W2		(66)
wing disc ML-DmD8		(59)
wing disc ML-DmD9		(43)
wing disc ML-DmD16-c3		(44)
wing disc ML-DmD21		15
wing disc ML-DmD32		(33)
haltere disc ML-DmD17-c3		26
eye-antennal disc ML-DmD11		(55)
antennal disc ML-DmD20-c5		(33)
mixed discs ML-DmD4-c1		(34)
CNS ML-DmBG1-c1		(86)
CNS ML-DmBG2-c2		(111)
tumorous blood cells mbn2		(62)
ovary fGS/OSS		(81)
ovary OSC		(85)
ovary OSS		(46)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		103
Schneider line 2 Sg4		28
embryonic 1182-4H		39
embryonic GM2		94
embryonic Kc167		39
embryonic S1		80
embryonic S3		43
leg disc CME L1		37
wing disc CME-W2		66
wing disc ML-DmD8		59
wing disc ML-DmD9		43
wing disc ML-DmD16-c3		44
wing disc ML-DmD21		15
wing disc ML-DmD32		33
haltere disc ML-DmD17-c3		26
eye-antennal disc ML-DmD11		55
antennal disc ML-DmD20-c5		33
mixed discs ML-DmD4-c1		34
CNS ML-DmBG1-c1		86
CNS ML-DmBG2-c2		(111)
tumorous blood cells mbn2		62
ovary fGS/OSS		81
ovary OSC		85
ovary OSS		46
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		103
Schneider line 2 Sg4		28
embryonic 1182-4H		39
embryonic GM2		94
embryonic Kc167		39
embryonic S1		80
embryonic S3		43
leg disc CME L1		37
wing disc CME-W2		66
wing disc ML-DmD8		59
wing disc ML-DmD9		43
wing disc ML-DmD16-c3		44
wing disc ML-DmD21		15
wing disc ML-DmD32		33
haltere disc ML-DmD17-c3		26
eye-antennal disc ML-DmD11		55
antennal disc ML-DmD20-c5		33
mixed discs ML-DmD4-c1		34
CNS ML-DmBG1-c1		86
CNS ML-DmBG2-c2		111
tumorous blood cells mbn2		62
ovary fGS/OSS		81
ovary OSC		85
ovary OSS		46
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		103
Schneider line 2 Sg4		28
embryonic 1182-4H		39
embryonic GM2		94
embryonic Kc167		39
embryonic S1		80
embryonic S3		43
leg disc CME L1		37
wing disc CME-W2		66
wing disc ML-DmD8		59
wing disc ML-DmD9		43
wing disc ML-DmD16-c3		44
wing disc ML-DmD21		15
wing disc ML-DmD32		33
haltere disc ML-DmD17-c3		26
eye-antennal disc ML-DmD11		55
antennal disc ML-DmD20-c5		33
mixed discs ML-DmD4-c1		34
CNS ML-DmBG1-c1		86
CNS ML-DmBG2-c2		111
tumorous blood cells mbn2		62
ovary fGS/OSS		81
ovary OSC		85
ovary OSS		46
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		(103)
Schneider line 2 Sg4		28
embryonic 1182-4H		(39)
embryonic GM2		(94)
embryonic Kc167		(39)
embryonic S1		(80)
embryonic S3		(43)
leg disc CME L1		(37)
wing disc CME-W2		(66)
wing disc ML-DmD8		(59)
wing disc ML-DmD9		(43)
wing disc ML-DmD16-c3		(44)
wing disc ML-DmD21		15
wing disc ML-DmD32		(33)
haltere disc ML-DmD17-c3		26
eye-antennal disc ML-DmD11		(55)
antennal disc ML-DmD20-c5		(33)
mixed discs ML-DmD4-c1		(34)
CNS ML-DmBG1-c1		(86)
CNS ML-DmBG2-c2		(111)
tumorous blood cells mbn2		(62)
ovary fGS/OSS		(81)
ovary OSC		(85)
ovary OSS		(46)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		103
Schneider line 2 Sg4		28
embryonic 1182-4H		39
embryonic GM2		94
embryonic Kc167		39
embryonic S1		80
embryonic S3		43
leg disc CME L1		37
wing disc CME-W2		66
wing disc ML-DmD8		59
wing disc ML-DmD9		43
wing disc ML-DmD16-c3		44
wing disc ML-DmD21		15
wing disc ML-DmD32		33
haltere disc ML-DmD17-c3		26
eye-antennal disc ML-DmD11		55
antennal disc ML-DmD20-c5		33
mixed discs ML-DmD4-c1		34
CNS ML-DmBG1-c1		86
CNS ML-DmBG2-c2		111
tumorous blood cells mbn2		62
ovary fGS/OSS		81
ovary OSC		85
ovary OSS		46
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		103
Schneider line 2 Sg4		28
embryonic 1182-4H		39
embryonic GM2		94
embryonic Kc167		39
embryonic S1		80
embryonic S3		43
leg disc CME L1		37
wing disc CME-W2		66
wing disc ML-DmD8		59
wing disc ML-DmD9		43
wing disc ML-DmD16-c3		44
wing disc ML-DmD21		15
wing disc ML-DmD32		33
haltere disc ML-DmD17-c3		26
eye-antennal disc ML-DmD11		55
antennal disc ML-DmD20-c5		33
mixed discs ML-DmD4-c1		34
CNS ML-DmBG1-c1		86
CNS ML-DmBG2-c2		111
tumorous blood cells mbn2		62
ovary fGS/OSS		81
ovary OSC		85
ovary OSS		46
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		14
cold shock, 4-day adult		10
heat shock, 4-day adult		22
Cadmium 50 mM 6 hrs, larvae L3		9
Cadmium 50 mM 12 hrs, larvae L3		14
Cadmium 50 mM 48 hrs, 4-day adult		23
Cadmium 100 mM 48 hrs, 4-day adult		46
Copper 0.5 mM 12 hrs, larvae L3		6
Copper 15 mM 48 hrs, 4-day adult		34
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		23
Ethanol 2.5% 3 hrs, larvae L3		41
Ethanol 5% 3 hrs, larvae L3		13
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		12
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		40
Caffeine 25 mg/ml 48 hrs, 4-day adult		18
Paraquat 5 mM 48 hrs, 4-day adult		36
Paraquat 10 mM 48 hrs, 4-day adult		31
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		7
Expression Level Scale		Very low Low Moderate Moderately high High

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		14
cold shock, 4-day adult		10
heat shock, 4-day adult		22
Cadmium 50 mM 6 hrs, larvae L3		9
Cadmium 50 mM 12 hrs, larvae L3		14
Cadmium 50 mM 48 hrs, 4-day adult		23
Cadmium 100 mM 48 hrs, 4-day adult		(46)
Copper 0.5 mM 12 hrs, larvae L3		6
Copper 15 mM 48 hrs, 4-day adult		(34)
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		23
Ethanol 2.5% 3 hrs, larvae L3		(41)
Ethanol 5% 3 hrs, larvae L3		13
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		12
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		(40)
Caffeine 25 mg/ml 48 hrs, 4-day adult		18
Paraquat 5 mM 48 hrs, 4-day adult		(36)
Paraquat 10 mM 48 hrs, 4-day adult		(31)
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		7
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		14
cold shock, 4-day adult		10
heat shock, 4-day adult		22
Cadmium 50 mM 6 hrs, larvae L3		9
Cadmium 50 mM 12 hrs, larvae L3		14
Cadmium 50 mM 48 hrs, 4-day adult		23
Cadmium 100 mM 48 hrs, 4-day adult		46
Copper 0.5 mM 12 hrs, larvae L3		6
Copper 15 mM 48 hrs, 4-day adult		34
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		23
Ethanol 2.5% 3 hrs, larvae L3		41
Ethanol 5% 3 hrs, larvae L3		13
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		12
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		40
Caffeine 25 mg/ml 48 hrs, 4-day adult		18
Paraquat 5 mM 48 hrs, 4-day adult		36
Paraquat 10 mM 48 hrs, 4-day adult		31
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		7
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		14
cold shock, 4-day adult		10
heat shock, 4-day adult		22
Cadmium 50 mM 6 hrs, larvae L3		9
Cadmium 50 mM 12 hrs, larvae L3		14
Cadmium 50 mM 48 hrs, 4-day adult		23
Cadmium 100 mM 48 hrs, 4-day adult		46
Copper 0.5 mM 12 hrs, larvae L3		6
Copper 15 mM 48 hrs, 4-day adult		34
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		23
Ethanol 2.5% 3 hrs, larvae L3		41
Ethanol 5% 3 hrs, larvae L3		13
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		12
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		40
Caffeine 25 mg/ml 48 hrs, 4-day adult		18
Paraquat 5 mM 48 hrs, 4-day adult		36
Paraquat 10 mM 48 hrs, 4-day adult		31
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		7
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		14
cold shock, 4-day adult		10
heat shock, 4-day adult		22
Cadmium 50 mM 6 hrs, larvae L3		9
Cadmium 50 mM 12 hrs, larvae L3		14
Cadmium 50 mM 48 hrs, 4-day adult		23
Cadmium 100 mM 48 hrs, 4-day adult		46
Copper 0.5 mM 12 hrs, larvae L3		6
Copper 15 mM 48 hrs, 4-day adult		34
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		23
Ethanol 2.5% 3 hrs, larvae L3		41
Ethanol 5% 3 hrs, larvae L3		13
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		12
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		40
Caffeine 25 mg/ml 48 hrs, 4-day adult		18
Paraquat 5 mM 48 hrs, 4-day adult		36
Paraquat 10 mM 48 hrs, 4-day adult		31
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		7
Expression Level Scale		Very low Low Moderate Moderately high High

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		14
cold shock, 4-day adult		10
heat shock, 4-day adult		22
Cadmium 50 mM 6 hrs, larvae L3		9
Cadmium 50 mM 12 hrs, larvae L3		14
Cadmium 50 mM 48 hrs, 4-day adult		23
Cadmium 100 mM 48 hrs, 4-day adult		(46)
Copper 0.5 mM 12 hrs, larvae L3		6
Copper 15 mM 48 hrs, 4-day adult		(34)
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		23
Ethanol 2.5% 3 hrs, larvae L3		(41)
Ethanol 5% 3 hrs, larvae L3		13
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		12
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		(40)
Caffeine 25 mg/ml 48 hrs, 4-day adult		18
Paraquat 5 mM 48 hrs, 4-day adult		(36)
Paraquat 10 mM 48 hrs, 4-day adult		31
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		7
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		14
cold shock, 4-day adult		10
heat shock, 4-day adult		22
Cadmium 50 mM 6 hrs, larvae L3		9
Cadmium 50 mM 12 hrs, larvae L3		14
Cadmium 50 mM 48 hrs, 4-day adult		23
Cadmium 100 mM 48 hrs, 4-day adult		46
Copper 0.5 mM 12 hrs, larvae L3		6
Copper 15 mM 48 hrs, 4-day adult		34
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		23
Ethanol 2.5% 3 hrs, larvae L3		41
Ethanol 5% 3 hrs, larvae L3		13
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		12
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		40
Caffeine 25 mg/ml 48 hrs, 4-day adult		18
Paraquat 5 mM 48 hrs, 4-day adult		36
Paraquat 10 mM 48 hrs, 4-day adult		31
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		7
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		14
cold shock, 4-day adult		10
heat shock, 4-day adult		22
Cadmium 50 mM 6 hrs, larvae L3		9
Cadmium 50 mM 12 hrs, larvae L3		14
Cadmium 50 mM 48 hrs, 4-day adult		23
Cadmium 100 mM 48 hrs, 4-day adult		46
Copper 0.5 mM 12 hrs, larvae L3		6
Copper 15 mM 48 hrs, 4-day adult		34
Zinc 5 mM 12 hrs, larvae L3		5
Zinc 4.5 mM 48 hrs, 4-day adult		23
Ethanol 2.5% 3 hrs, larvae L3		41
Ethanol 5% 3 hrs, larvae L3		13
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		12
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		40
Caffeine 25 mg/ml 48 hrs, 4-day adult		18
Paraquat 5 mM 48 hrs, 4-day adult		36
Paraquat 10 mM 48 hrs, 4-day adult		31
Rotenone 2 μg 12 hrs, larvae L3		10
Rotenone 8 μg 12 hrs, larvae L3		7
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010, Graveley et al., 2011)

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0033889

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG6701-RA

Alleles & Phenotypes

Summary of Allele Phenotypes

Other Phenotypes

Allele

visible, with Scer\GAL4^en-e16E

CG6701^EP2054

visible, with Scer\GAL4^ey.PH

CG6701^EP2054

visible, with Scer\GAL4^hs.2sev

CG6701^EP2054

Phenotype manifest in

Allele

eye, with Scer\GAL4^ey.PH

CG6701^EP2054

eye, with Scer\GAL4^hs.2sev

CG6701^EP2054

wing, with Scer\GAL4^en-e16E

CG6701^EP2054

Classical Alleles ( 5 )

For All Classical Alleles Show

Allele of CG6701	Mutagen	Stocks	Known lesion
CG6701^GS2275		1	Yes
CG6701^KG00917	P-element activity	1	--
CG6701^MB00389		1	--
CG6701^NP0877		1	--
CG6701^EP2054	P-element activity	0	--

Alleles Carried on Transgenic Constructs ( 6 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG6701	Mutagen	Stocks	Known lesion
CG6701^GD14809	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG6701^JF01740	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG6701^JF02714	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG6701^dsRNA.cMa	in vitro construct - RNAi	0	--
CG6701^NIG.6701R	in vitro construct - RNAi in vitro construct - regulatory fusion	0	Yes
CG6701^Scer\UAS.cBa	in vitro construct - regulatory fusion	0	Yes