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Gene Dmel\RpS23

General Information
Symbol	Dmel\RpS23	Species	D. melanogaster
Name	Ribosomal protein S23	Annotation symbol	CG8415
Feature type	protein_coding_gene	FlyBase ID	FBgn0033912
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	50E4-50E4	Sequence location	2R:10,102,601..10,104,132 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Ribosomal protein S23 is referred to in FlyBase by the symbol Dmel\RpS23 (CG8415, FBgn0033912). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: structural constituent of ribosome. There is experimental evidence that it is involved in the biological process: centrosome organization; centrosome duplication. 5 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Nucleic acid-binding, OB-fold; Ribosomal protein S12/S23; Ribosomal protein S23, eukaryotic/archaeal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1638832_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of RpS23. Gene sequence location is 2R:10102601..10104132.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 50E4-50E4   Limits computationally determined from genome sequence between P{lacW}mamk05821 and P{lacW}l(2)s3475s3475&P{lacW}Hsc70-5k04907
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\RpS23 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Low-frequency RNA-Seq exon junction(s) not annotated. Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) RpS23-RA FBtr0087575  NM_137095   865   143 RpS23-RB FBtr0339970     553   143
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein RpS23-PA   FBpp0086701   16.0   143   11.29     NP_610939   AAF58277 RpS23-PB   FBpp0308991   16.0   143   11.29
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein S23, eukaryotic/archaeal (IPR005680) Ribosomal protein S12/S23 (IPR006032) Nucleic acid-binding, OB-fold (IPR012340)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA203070   AA263223   AA567241   AA736140   AA803568   AA803905   AA804056   AA821113   AA950796   AE013599 AAF58277   AF083281   AF083288   AI062060   AI064109   AI107967   AI110183   AI114373   AI135582   AI256914   AI257492   AI260886   AI260932   AI293394   AI387216   AI403703   AI405556   AI516091   AI531935   AI532942   AI533161   AI946864   AQ026461   AW941395   AY089523 AAL90261   AY231818   AY232245   AY432020   AY439477   AY826140   AY829789   BG632633   BG636419   BG637106   BG638621   BG639633   BG641283   BH854646   BH854647   BI163022   BI164777   BI165474   BI166486   BI167231   BI167490   BI167625   BI167884   BI167951   BI168009   BI168806   BI168997   BI169078   BI170717   BI170718   BI172181   BI172706   BI212878   BI213606   BI213686   BI215713   BI216343   BI216566   BI227939   BI228041   BI230240   BI230252   BI230877   BI231809   BI232137   BI233176   BI234274   BI234362   BI234493   BI234968   BI235411   BI236055   BI236098   BI236279   BI236791   BI238350   BI238591   BI240374   BI242396   BI242777   BI243245   BI243783   BI351765   BI352223   BI352440   BI352829   BI352847   BI352906   BI353041   BI353518   BI353684   BI353862   BI353869   BI353958   BI354704   BI354747   BI355042   BI355295   BI355444   BI355484   BI355579   BI355664   BI356099   BI356263   BI356782   BI356823   BI357485   BI358101   BI361537   BI361538   BI361737   BI362157   BI362743   BI363825   BI364100   BI364581   BI364672   BI365389   BI367323   BI367578   BI369411   BI370730   BI371524   BI374700   BI374782   BI375212   BI375330   BI481930   BI482401   BI483123   BI483435   BI483597   BI485263   BI486196   BI486519   BI563488   BI563649   BI563969   BI564015   BI564049   BI564754   BI565381   BI565475   BI565538   BI565937   BI566728   BI567204   BI567618   BI567656   BI567725   BI568063   BI568188   BI568379   BI568439   BI569078   BI569112   BI569279   BI569280   BI569302   BI569395   BI569396   BI569549   BI570227   BI570423   BI571139   BI571212   BI571248   BI571624   BI571647   BI571757   BI571846   BI572745   BI573021   BI573042   BI573212   BI573627   BI573789   BI574218   BI574310   BI574703   BI574798   BI574832   BI574962   BI575004   BI575314   BI575330   BI575388   BI575402   BI575583   BI575654   BI575661   BI575681   BI575757   BI575953   BI576083   BI576106   BI576588   BI576956   BI577176   BI577359   BI577930   BI578088   BI578675   BI579036   BI579904   BI581034   BI581445   BI581529   BI581537   BI581544   BI581789   BI581877   BI582007   BI582051   BI582104   BI582123   BI582365   BI582447   BI582960   BI584414   BI584565   BI584567   BI584839   BI585044   BI585192   BI585958   BI585983   BI586155   BI586206   BI586398   BI586788   BI586844   BI586889   BI587059   BI587755   BI588245   BI588411   BI588486   BI588621   BI588709   BI588955   BI589302   BI589807   BI590570   BI591101   BI591137   BI591219   BI591250   BI591460   BI591659   BI591691   BI592284   BI592807   BI593172   BI593271   BI593483   BI604648   BI605083   BI605102   BI605492   BI605641   BI606125   BI606188   BI606601   BI606626   BI606979   BI607158   BI607399   BI607879   BI608030   BI608120   BI608543   BI608777   BI608804   BI608816   BI609284   BI609568   BI609679   BI609742   BI610188   BI610287   BI610301   BI610421   BI610599   BI610631   BI610693   BI610956   BI611329   BI611782   BI612191   BI612236   BI612926   BI613116   BI613239   BI613492   BI613760   BI613885   BI613973   BI613982   BI614265   BI614782   BI615023   BI615078   BI615118   BI615142   BI615230   BI616622   BI617025   BI617466   BI617533   BI617752   BI617810   BI617914   BI617981   BI618826   BI618972   BI619035   BI619074   BI619348   BI619670   BI619903   BI620567   BI620707   BI620738   BI621276   BI621677   BI622994   BI623019   BI623046   BI623401   BI624534   BI624562   BI624929   BI624941   BI625097   BI625451   BI625515   BI625964   BI626121   BI626377   BI626404   BI626689   BI626879   BI627692   BI627920   BI628202   BI628279   BI628874   BI629128   BI629164   BI629209   BI630089   BI630198   BI630997   BI631029   BI631047   BI631193   BI631372   BI631575   BI631918   BI636365   BI636388   BI637725   BI640748   BI641003   BP541822   BP542861   BP543241   BP543325   BP544851   BP545129   BP545978   BP545992   BP546658   BP548180   BP550070   BP553230   BP553599   BP554315   BP557071   BP559177   BP560357   BQ103057   BX007138   BX008509   BX015968   BX017536   BX020337   BX029249   BX030470   BX031820   BX038128   BX062458   BX071570   BX072116   CA805360   CA805688   CA805755   CK131758   CK657894   CK662488   CO152834   CO153568   CO153607   CO153719   CO154767   CO154786   CO155042   CO155918   CO155976   CO180026   CO181499   CO181893   CO182160   CO182249   CO183764   CO183814   CO184311   CO184600   CO184705   CO184934   CO191269   CO191490   CO191497   CO192192   CO192363   CO193734   CO194027   CO194109   CO195142   CO195557   CO265400   CO268407   CO283636   CO322275   CO322488   CO335353   CO335402   CO335418   CO335693   CO335960   CO336015   CO336166   CO336209   CO336301   CO336393   CO336761   CO337369   CO337468   CO337469   CO337575   CO337963   CO338755   CR937111   CR937154   DQ440069   DQ673403   EC058156   EC072806   EC075257   EC077671   EC219915   EC223506   EC225664   EC228011   EC260798   EC261215   EC261942   EC262444   EC263247   EC263676   EC263926   EC264078   EC264167   EC264430   EC264673   EC265197   EC265734   EC265875   EC265996   EC266109   EC266370   EC266816   EC266821   EC266837   EC267016   EC267451   EC267564   EC267699   EC267978   EF070519   EL877208   EL887170   EV574976   EV575676   EV575886   EV576273   EV576545   EV577683   EV577742   EV577911   EV578246   EV578287   EV578303   EV578617   EV578690   EV578748   EV578770   EV578978   EV579145   EV579220   EV579223   EV579320   EV579894   EV580221   EV580263   EV580381   EV580472   EV580554   EV580945   EV581398   EV581448   EV581480   EV582805   EV582921   EV583086   EV583333   EV583506   EV583641   EV583735   EV583929   EV584054   EV584149   EV584194   EV584296   EV584760   EV585247   EV585622   EV585718   EV586061   EV586089   EV586157   EV586407   EV587612   EV587793   EV588545   EV589820   EV590819   EV590950   EV591096   EV592266   EV592829   EV592914   EV593743   EV594353   EV594570   EV594626   EV596931   EV597062   EV597191   EV597305   EV597629   EV599352   EV599456   EV599533   EV599993
UniProtKB/Swiss-Prot	Q8T3U2
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
ribosome inferred from direct assay (Alonso and Santaren, 2006)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2786.925 Larval Midgut    4459 Larval Hindgut    4577.5 Larval Malpighian Tubules    5685.6 Larval Fat Body    7999 Larval Salivary Gland    7899.3 Larval Trachea    6369.275 Larval Carcass    4785.95 Adult Head    4764.6 Adult Eye    7300.625 Adult Brain    2871.1 Adult Thoracic-Abdominal Ganglion    3801.9 Adult Crop    6313.6 Adult Midgut    5226.6 Adult Hindgut    5323.4 Adult Malpighian Tubules    4905.1 Adult Fat Body    5907.8 Adult Salivary Gland    13436.5 Adult Heart    7174.975 Adult VirginFemale Spermatheca    5111.9 Adult InseminatedFemale Spermatheca    5331.6 Adult Ovary    3578.5 Adult Testis    1437.1 Adult Male Accessory Gland    9010.3 Adult Carcass    6232 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2786.925) Larval Midgut  (4459) Larval Hindgut  (4577.5) Larval Malpighian Tubules  (5685.6) Larval Fat Body  (7999) Larval Salivary Gland  (7899.3) Larval Trachea  (6369.275) Larval Carcass  (4785.95) Adult Head  (4764.6) Adult Eye  (7300.625) Adult Brain  (2871.1) Adult Thoracic-Abdominal Ganglion  (3801.9) Adult Crop  (6313.6) Adult Midgut  (5226.6) Adult Hindgut  (5323.4) Adult Malpighian Tubules  (4905.1) Adult Fat Body  (5907.8) Adult Salivary Gland  (13436.5) Adult Heart  (7174.975) Adult VirginFemale Spermatheca  (5111.9) Adult InseminatedFemale Spermatheca  (5331.6) Adult Ovary  (3578.5) Adult Testis  (1437.1) Adult Male Accessory Gland  (9010.3) Adult Carcass  (6232) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2786.925) Larval Midgut  (4459) Larval Hindgut  (4577.5) Larval Malpighian Tubules  (5685.6) Larval Fat Body  (7999) Larval Salivary Gland  (7899.3) Larval Trachea  (6369.275) Larval Carcass  (4785.95) Adult Head  (4764.6) Adult Eye  (7300.625) Adult Brain  (2871.1) Adult Thoracic-Abdominal Ganglion  (3801.9) Adult Crop  (6313.6) Adult Midgut  (5226.6) Adult Hindgut  (5323.4) Adult Malpighian Tubules  (4905.1) Adult Fat Body  (5907.8) Adult Salivary Gland  (13436.5) Adult Heart  (7174.975) Adult VirginFemale Spermatheca  (5111.9) Adult InseminatedFemale Spermatheca  (5331.6) Adult Ovary  (3578.5) Adult Testis  (1437.1) Adult Male Accessory Gland  (9010.3) Adult Carcass  (6232) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2786.925 Larval Midgut    4459 Larval Hindgut    4577.5 Larval Malpighian Tubules    5685.6 Larval Fat Body    7999 Larval Salivary Gland    7899.3 Larval Trachea    6369.275 Larval Carcass    4785.95 Adult Head    4764.6 Adult Eye    7300.625 Adult Brain    2871.1 Adult Thoracic-Abdominal Ganglion    3801.9 Adult Crop    6313.6 Adult Midgut    5226.6 Adult Hindgut    5323.4 Adult Malpighian Tubules    4905.1 Adult Fat Body    5907.8 Adult Salivary Gland    13436.5 Adult Heart    7174.975 Adult VirginFemale Spermatheca    5111.9 Adult InseminatedFemale Spermatheca    5331.6 Adult Ovary    3578.5 Adult Testis    1437.1 Adult Male Accessory Gland    9010.3 Adult Carcass    6232 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2786.925 Larval Midgut    4459 Larval Hindgut    4577.5 Larval Malpighian Tubules    5685.6 Larval Fat Body    7999 Larval Salivary Gland    7899.3 Larval Trachea    6369.275 Larval Carcass    4785.95 Adult Head    4764.6 Adult Eye    7300.625 Adult Brain    2871.1 Adult Thoracic-Abdominal Ganglion    3801.9 Adult Crop    6313.6 Adult Midgut    5226.6 Adult Hindgut    5323.4 Adult Malpighian Tubules    4905.1 Adult Fat Body    5907.8 Adult Salivary Gland    13436.5 Adult Heart    7174.975 Adult VirginFemale Spermatheca    5111.9 Adult InseminatedFemale Spermatheca    5331.6 Adult Ovary    3578.5 Adult Testis    1437.1 Adult Male Accessory Gland    9010.3 Adult Carcass    6232 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2786.925) Larval Midgut  (4459) Larval Hindgut  (4577.5) Larval Malpighian Tubules  (5685.6) Larval Fat Body  (7999) Larval Salivary Gland  (7899.3) Larval Trachea  (6369.275) Larval Carcass  (4785.95) Adult Head  (4764.6) Adult Eye  (7300.625) Adult Brain  (2871.1) Adult Thoracic-Abdominal Ganglion  (3801.9) Adult Crop  (6313.6) Adult Midgut  (5226.6) Adult Hindgut  (5323.4) Adult Malpighian Tubules  (4905.1) Adult Fat Body  (5907.8) Adult Salivary Gland  (13436.5) Adult Heart  (7174.975) Adult VirginFemale Spermatheca  (5111.9) Adult InseminatedFemale Spermatheca  (5331.6) Adult Ovary  (3578.5) Adult Testis  (1437.1) Adult Male Accessory Gland  (9010.3) Adult Carcass  (6232) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2786.925) Larval Midgut  (4459) Larval Hindgut  (4577.5) Larval Malpighian Tubules  (5685.6) Larval Fat Body  (7999) Larval Salivary Gland  (7899.3) Larval Trachea  (6369.275) Larval Carcass  (4785.95) Adult Head  (4764.6) Adult Eye  (7300.625) Adult Brain  (2871.1) Adult Thoracic-Abdominal Ganglion  (3801.9) Adult Crop  (6313.6) Adult Midgut  (5226.6) Adult Hindgut  (5323.4) Adult Malpighian Tubules  (4905.1) Adult Fat Body  (5907.8) Adult Salivary Gland  (13436.5) Adult Heart  (7174.975) Adult VirginFemale Spermatheca  (5111.9) Adult InseminatedFemale Spermatheca  (5331.6) Adult Ovary  (3578.5) Adult Testis  1437.1 Adult Male Accessory Gland  (9010.3) Adult Carcass  (6232) Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2786.925 Larval Midgut    4459 Larval Hindgut    4577.5 Larval Malpighian Tubules    5685.6 Larval Fat Body    7999 Larval Salivary Gland    7899.3 Larval Trachea    6369.275 Larval Carcass    4785.95 Adult Head    4764.6 Adult Eye    7300.625 Adult Brain    2871.1 Adult Thoracic-Abdominal Ganglion    3801.9 Adult Crop    6313.6 Adult Midgut    5226.6 Adult Hindgut    5323.4 Adult Malpighian Tubules    4905.1 Adult Fat Body    5907.8 Adult Salivary Gland    13436.5 Adult Heart    7174.975 Adult VirginFemale Spermatheca    5111.9 Adult InseminatedFemale Spermatheca    5331.6 Adult Ovary    3578.5 Adult Testis    1437.1 Adult Male Accessory Gland    9010.3 Adult Carcass    6232 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    4764.6   NA  Eye    7300.625   NA  Brain    2871.1   2786.925  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    3801.9   NA  Crop    6313.6   4459  Midgut    5226.6   4577.5  Hindgut    5323.4   5685.6  Malpighian Tubules    4905.1   7999  Fat Body    5907.8   7899.3  Salivary Gland    13436.5   NA  Heart    7174.975   6369.275  Trachea    NA   NA  VirginFemale Spermatheca    5111.9   NA  InseminatedFemale Spermatheca    5331.6   NA  Ovary    3578.5   NA  Testis    1437.1   NA  Male Accessory Gland    9010.3   4785.95  Carcass    6232 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    548 central nervous system, larvae L3    335 central nervous system, pupae P8    160 head, virgin 1-day female    196 head, virgin 4-day female    306 head, virgin 20-day female    426 head, mated 1-day female    174 head, mated 4-day female    336 head, mated 20-day female    296 head, mated 1-day male    163 head, mated 4-day male    215 head, mated 20-day male    343 salivary gland, larvae L3 wandering    331 salivary gland, white prepupae    707 digestive system, larvae L3 wandering    327 digestive system, 1-day adult    415 digestive system, 4-day adult    347 digestive system, 20-day adult    400 fat body, larvae L3 wandering    173 fat body, white prepupae    180 fat body, pupae P8    261 carcass, larvae L3 wandering    364 carcass, 1-day adult    186 carcass, 4-day adult    232 carcass, 20-day adult    286 ovary, virgin 4-day female    507 ovary, mated 4-day female    387 testis, mated 4-day male    230 accessory gland, mated 4-day male    359 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (548) central nervous system, larvae L3  (335) central nervous system, pupae P8  (160) head, virgin 1-day female  (196) head, virgin 4-day female  (306) head, virgin 20-day female  (426) head, mated 1-day female  (174) head, mated 4-day female  (336) head, mated 20-day female  (296) head, mated 1-day male  (163) head, mated 4-day male  (215) head, mated 20-day male  (343) salivary gland, larvae L3 wandering  (331) salivary gland, white prepupae  (707) digestive system, larvae L3 wandering  (327) digestive system, 1-day adult  (415) digestive system, 4-day adult  (347) digestive system, 20-day adult  (400) fat body, larvae L3 wandering  (173) fat body, white prepupae  (180) fat body, pupae P8  (261) carcass, larvae L3 wandering  (364) carcass, 1-day adult  (186) carcass, 4-day adult  (232) carcass, 20-day adult  (286) ovary, virgin 4-day female  (507) ovary, mated 4-day female  (387) testis, mated 4-day male  (230) accessory gland, mated 4-day male  (359) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (548) central nervous system, larvae L3  (335) central nervous system, pupae P8  (160) head, virgin 1-day female  (196) head, virgin 4-day female  (306) head, virgin 20-day female  (426) head, mated 1-day female  (174) head, mated 4-day female  (336) head, mated 20-day female  (296) head, mated 1-day male  (163) head, mated 4-day male  (215) head, mated 20-day male  (343) salivary gland, larvae L3 wandering  (331) salivary gland, white prepupae  (707) digestive system, larvae L3 wandering  (327) digestive system, 1-day adult  (415) digestive system, 4-day adult  (347) digestive system, 20-day adult  (400) fat body, larvae L3 wandering  (173) fat body, white prepupae  (180) fat body, pupae P8  (261) carcass, larvae L3 wandering  (364) carcass, 1-day adult  (186) carcass, 4-day adult  (232) carcass, 20-day adult  (286) ovary, virgin 4-day female  (507) ovary, mated 4-day female  (387) testis, mated 4-day male  (230) accessory gland, mated 4-day male  (359) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    548 central nervous system, larvae L3    335 central nervous system, pupae P8    160 head, virgin 1-day female    196 head, virgin 4-day female    306 head, virgin 20-day female    426 head, mated 1-day female    174 head, mated 4-day female    336 head, mated 20-day female    296 head, mated 1-day male    163 head, mated 4-day male    215 head, mated 20-day male    343 salivary gland, larvae L3 wandering    331 salivary gland, white prepupae    707 digestive system, larvae L3 wandering    327 digestive system, 1-day adult    415 digestive system, 4-day adult    347 digestive system, 20-day adult    400 fat body, larvae L3 wandering    173 fat body, white prepupae    180 fat body, pupae P8    261 carcass, larvae L3 wandering    364 carcass, 1-day adult    186 carcass, 4-day adult    232 carcass, 20-day adult    286 ovary, virgin 4-day female    507 ovary, mated 4-day female    387 testis, mated 4-day male    230 accessory gland, mated 4-day male    359 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    548 central nervous system, larvae L3    335 central nervous system, pupae P8    160 head, virgin 1-day female    196 head, virgin 4-day female    306 head, virgin 20-day female    426 head, mated 1-day female    174 head, mated 4-day female    336 head, mated 20-day female    296 head, mated 1-day male    163 head, mated 4-day male    215 head, mated 20-day male    343 salivary gland, larvae L3 wandering    331 salivary gland, white prepupae    707 digestive system, larvae L3 wandering    327 digestive system, 1-day adult    415 digestive system, 4-day adult    347 digestive system, 20-day adult    400 fat body, larvae L3 wandering    173 fat body, white prepupae    180 fat body, pupae P8    261 carcass, larvae L3 wandering    364 carcass, 1-day adult    186 carcass, 4-day adult    232 carcass, 20-day adult    286 ovary, virgin 4-day female    507 ovary, mated 4-day female    387 testis, mated 4-day male    230 accessory gland, mated 4-day male    359 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (548) central nervous system, larvae L3  (335) central nervous system, pupae P8  (160) head, virgin 1-day female  (196) head, virgin 4-day female  (306) head, virgin 20-day female  (426) head, mated 1-day female  (174) head, mated 4-day female  (336) head, mated 20-day female  (296) head, mated 1-day male  (163) head, mated 4-day male  (215) head, mated 20-day male  (343) salivary gland, larvae L3 wandering  (331) salivary gland, white prepupae  (707) digestive system, larvae L3 wandering  (327) digestive system, 1-day adult  (415) digestive system, 4-day adult  (347) digestive system, 20-day adult  (400) fat body, larvae L3 wandering  (173) fat body, white prepupae  (180) fat body, pupae P8  (261) carcass, larvae L3 wandering  (364) carcass, 1-day adult  (186) carcass, 4-day adult  (232) carcass, 20-day adult  (286) ovary, virgin 4-day female  (507) ovary, mated 4-day female  (387) testis, mated 4-day male  (230) accessory gland, mated 4-day male  (359) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (548) central nervous system, larvae L3  (335) central nervous system, pupae P8  (160) head, virgin 1-day female  (196) head, virgin 4-day female  (306) head, virgin 20-day female  (426) head, mated 1-day female  (174) head, mated 4-day female  (336) head, mated 20-day female  (296) head, mated 1-day male  (163) head, mated 4-day male  (215) head, mated 20-day male  (343) salivary gland, larvae L3 wandering  (331) salivary gland, white prepupae  (707) digestive system, larvae L3 wandering  (327) digestive system, 1-day adult  (415) digestive system, 4-day adult  (347) digestive system, 20-day adult  (400) fat body, larvae L3 wandering  (173) fat body, white prepupae  (180) fat body, pupae P8  (261) carcass, larvae L3 wandering  (364) carcass, 1-day adult  (186) carcass, 4-day adult  (232) carcass, 20-day adult  (286) ovary, virgin 4-day female  (507) ovary, mated 4-day female  (387) testis, mated 4-day male  (230) accessory gland, mated 4-day male  (359) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    548 central nervous system, larvae L3    335 central nervous system, pupae P8    160 head, virgin 1-day female    196 head, virgin 4-day female    306 head, virgin 20-day female    426 head, mated 1-day female    174 head, mated 4-day female    336 head, mated 20-day female    296 head, mated 1-day male    163 head, mated 4-day male    215 head, mated 20-day male    343 salivary gland, larvae L3 wandering    331 salivary gland, white prepupae    707 digestive system, larvae L3 wandering    327 digestive system, 1-day adult    415 digestive system, 4-day adult    347 digestive system, 20-day adult    400 fat body, larvae L3 wandering    173 fat body, white prepupae    180 fat body, pupae P8    261 carcass, larvae L3 wandering    364 carcass, 1-day adult    186 carcass, 4-day adult    232 carcass, 20-day adult    286 ovary, virgin 4-day female    507 ovary, mated 4-day female    387 testis, mated 4-day male    230 accessory gland, mated 4-day male    359 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1661 embryo 02-04hr    2383 embryo 04-06hr    2763 embryo 06-08hr    2650 embryo 08-10hr    3087 embryo 10-12hr    3663 embryo 12-14hr    2227 embryo 14-16hr    2541 embryo 16-18hr    2071 embryo 18-20hr    1918 embryo 20-22hr    1992 embryo 22-24hr    1979 larva L1    2790 larva L2    2393 larva L3 12hr old    1707 larva L3 puffstage 1-2    1505 larva L3 puffstage 3-6    1387 larva L3 puffstage 7-9    1526 white prepupae new    1491 white prepupae 12hr    1394 white prepupae 24hr    1379 pupae 2d postWPP    1142 pupae 3d postWPP    922 pupae 4d postWPP    972 adult male 01day    732 adult male 05day    697 adult male 30day    888 adult female 01day    1935 adult female 05day    1737 adult female 30day    1743 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1661) embryo 02-04hr  (2383) embryo 04-06hr  (2763) embryo 06-08hr  (2650) embryo 08-10hr  (3087) embryo 10-12hr  (3663) embryo 12-14hr  (2227) embryo 14-16hr  (2541) embryo 16-18hr  (2071) embryo 18-20hr  (1918) embryo 20-22hr  (1992) embryo 22-24hr  (1979) larva L1  (2790) larva L2  (2393) larva L3 12hr old  (1707) larva L3 puffstage 1-2  (1505) larva L3 puffstage 3-6  (1387) larva L3 puffstage 7-9  (1526) white prepupae new  (1491) white prepupae 12hr  (1394) white prepupae 24hr  (1379) pupae 2d postWPP  (1142) pupae 3d postWPP  (922) pupae 4d postWPP  (972) adult male 01day  (732) adult male 05day  (697) adult male 30day  (888) adult female 01day  (1935) adult female 05day  (1737) adult female 30day  (1743) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (1661) embryo 02-04hr  (2383) embryo 04-06hr  (2763) embryo 06-08hr  (2650) embryo 08-10hr  (3087) embryo 10-12hr  (3663) embryo 12-14hr  (2227) embryo 14-16hr  (2541) embryo 16-18hr  (2071) embryo 18-20hr  (1918) embryo 20-22hr  (1992) embryo 22-24hr  (1979) larva L1  (2790) larva L2  (2393) larva L3 12hr old  (1707) larva L3 puffstage 1-2  (1505) larva L3 puffstage 3-6  (1387) larva L3 puffstage 7-9  (1526) white prepupae new  (1491) white prepupae 12hr  (1394) white prepupae 24hr  (1379) pupae 2d postWPP  (1142) pupae 3d postWPP  (922) pupae 4d postWPP  (972) adult male 01day  (732) adult male 05day  (697) adult male 30day  (888) adult female 01day  (1935) adult female 05day  (1737) adult female 30day  (1743) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1661 embryo 02-04hr    2383 embryo 04-06hr    2763 embryo 06-08hr    2650 embryo 08-10hr    3087 embryo 10-12hr    3663 embryo 12-14hr    2227 embryo 14-16hr    2541 embryo 16-18hr    2071 embryo 18-20hr    1918 embryo 20-22hr    1992 embryo 22-24hr    1979 larva L1    2790 larva L2    2393 larva L3 12hr old    1707 larva L3 puffstage 1-2    1505 larva L3 puffstage 3-6    1387 larva L3 puffstage 7-9    1526 white prepupae new    1491 white prepupae 12hr    1394 white prepupae 24hr    1379 pupae 2d postWPP    1142 pupae 3d postWPP    922 pupae 4d postWPP    972 adult male 01day    732 adult male 05day    697 adult male 30day    888 adult female 01day    1935 adult female 05day    1737 adult female 30day    1743 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1661 embryo 02-04hr    2383 embryo 04-06hr    2763 embryo 06-08hr    2650 embryo 08-10hr    3087 embryo 10-12hr    3663 embryo 12-14hr    2227 embryo 14-16hr    2541 embryo 16-18hr    2071 embryo 18-20hr    1918 embryo 20-22hr    1992 embryo 22-24hr    1979 larva L1    2790 larva L2    2393 larva L3 12hr old    1707 larva L3 puffstage 1-2    1505 larva L3 puffstage 3-6    1387 larva L3 puffstage 7-9    1526 white prepupae new    1491 white prepupae 12hr    1394 white prepupae 24hr    1379 pupae 2d postWPP    1142 pupae 3d postWPP    922 pupae 4d postWPP    972 adult male 01day    732 adult male 05day    697 adult male 30day    888 adult female 01day    1935 adult female 05day    1737 adult female 30day    1743 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1661) embryo 02-04hr  (2383) embryo 04-06hr  (2763) embryo 06-08hr  (2650) embryo 08-10hr  (3087) embryo 10-12hr  (3663) embryo 12-14hr  (2227) embryo 14-16hr  (2541) embryo 16-18hr  (2071) embryo 18-20hr  (1918) embryo 20-22hr  (1992) embryo 22-24hr  (1979) larva L1  (2790) larva L2  (2393) larva L3 12hr old  (1707) larva L3 puffstage 1-2  (1505) larva L3 puffstage 3-6  (1387) larva L3 puffstage 7-9  (1526) white prepupae new  (1491) white prepupae 12hr  (1394) white prepupae 24hr  (1379) pupae 2d postWPP  (1142) pupae 3d postWPP  (922) pupae 4d postWPP  (972) adult male 01day  (732) adult male 05day  (697) adult male 30day  (888) adult female 01day  (1935) adult female 05day  (1737) adult female 30day  (1743) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (1661) embryo 02-04hr  (2383) embryo 04-06hr  (2763) embryo 06-08hr  (2650) embryo 08-10hr  (3087) embryo 10-12hr  (3663) embryo 12-14hr  (2227) embryo 14-16hr  (2541) embryo 16-18hr  (2071) embryo 18-20hr  (1918) embryo 20-22hr  (1992) embryo 22-24hr  (1979) larva L1  (2790) larva L2  (2393) larva L3 12hr old  (1707) larva L3 puffstage 1-2  (1505) larva L3 puffstage 3-6  (1387) larva L3 puffstage 7-9  (1526) white prepupae new  (1491) white prepupae 12hr  (1394) white prepupae 24hr  (1379) pupae 2d postWPP  (1142) pupae 3d postWPP  (922) pupae 4d postWPP  (972) adult male 01day  (732) adult male 05day  (697) adult male 30day  (888) adult female 01day  (1935) adult female 05day  (1737) adult female 30day  (1743) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1661 embryo 02-04hr    2383 embryo 04-06hr    2763 embryo 06-08hr    2650 embryo 08-10hr    3087 embryo 10-12hr    3663 embryo 12-14hr    2227 embryo 14-16hr    2541 embryo 16-18hr    2071 embryo 18-20hr    1918 embryo 20-22hr    1992 embryo 22-24hr    1979 larva L1    2790 larva L2    2393 larva L3 12hr old    1707 larva L3 puffstage 1-2    1505 larva L3 puffstage 3-6    1387 larva L3 puffstage 7-9    1526 white prepupae new    1491 white prepupae 12hr    1394 white prepupae 24hr    1379 pupae 2d postWPP    1142 pupae 3d postWPP    922 pupae 4d postWPP    972 adult male 01day    732 adult male 05day    697 adult male 30day    888 adult female 01day    1935 adult female 05day    1737 adult female 30day    1743 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    1855 Schneider line 2 Sg4    1232 embryonic 1182-4H    1047 embryonic GM2    631 embryonic Kc167    841 embryonic S1    813 embryonic S3    890 leg disc CME L1    1311 wing disc CME-W2    782 wing disc ML-DmD8    1474 wing disc ML-DmD9    1038 wing disc ML-DmD16-c3    904 wing disc ML-DmD21    1739 wing disc ML-DmD32    757 haltere disc ML-DmD17-c3    666 eye-antennal disc ML-DmD11    1216 antennal disc ML-DmD20-c5    1376 mixed discs ML-DmD4-c1    1217 CNS ML-DmBG1-c1    1302 CNS ML-DmBG2-c2    1538 tumorous blood cells mbn2    911 ovary fGS/OSS    591 ovary OSC    366 ovary OSS    239 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (1855) Schneider line 2 Sg4  (1232) embryonic 1182-4H  (1047) embryonic GM2  (631) embryonic Kc167  (841) embryonic S1  (813) embryonic S3  (890) leg disc CME L1  (1311) wing disc CME-W2  (782) wing disc ML-DmD8  (1474) wing disc ML-DmD9  (1038) wing disc ML-DmD16-c3  (904) wing disc ML-DmD21  (1739) wing disc ML-DmD32  (757) haltere disc ML-DmD17-c3  (666) eye-antennal disc ML-DmD11  (1216) antennal disc ML-DmD20-c5  (1376) mixed discs ML-DmD4-c1  (1217) CNS ML-DmBG1-c1  (1302) CNS ML-DmBG2-c2  (1538) tumorous blood cells mbn2  (911) ovary fGS/OSS  (591) ovary OSC  (366) ovary OSS  (239) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (1855) Schneider line 2 Sg4  (1232) embryonic 1182-4H  (1047) embryonic GM2  (631) embryonic Kc167  (841) embryonic S1  (813) embryonic S3  (890) leg disc CME L1  (1311) wing disc CME-W2  (782) wing disc ML-DmD8  (1474) wing disc ML-DmD9  (1038) wing disc ML-DmD16-c3  (904) wing disc ML-DmD21  (1739) wing disc ML-DmD32  (757) haltere disc ML-DmD17-c3  (666) eye-antennal disc ML-DmD11  (1216) antennal disc ML-DmD20-c5  (1376) mixed discs ML-DmD4-c1  (1217) CNS ML-DmBG1-c1  (1302) CNS ML-DmBG2-c2  (1538) tumorous blood cells mbn2  (911) ovary fGS/OSS  (591) ovary OSC  (366) ovary OSS  (239) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    1855 Schneider line 2 Sg4    1232 embryonic 1182-4H    1047 embryonic GM2    631 embryonic Kc167    841 embryonic S1    813 embryonic S3    890 leg disc CME L1    1311 wing disc CME-W2    782 wing disc ML-DmD8    1474 wing disc ML-DmD9    1038 wing disc ML-DmD16-c3    904 wing disc ML-DmD21    1739 wing disc ML-DmD32    757 haltere disc ML-DmD17-c3    666 eye-antennal disc ML-DmD11    1216 antennal disc ML-DmD20-c5    1376 mixed discs ML-DmD4-c1    1217 CNS ML-DmBG1-c1    1302 CNS ML-DmBG2-c2    1538 tumorous blood cells mbn2    911 ovary fGS/OSS    591 ovary OSC    366 ovary OSS    239 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    1855 Schneider line 2 Sg4    1232 embryonic 1182-4H    1047 embryonic GM2    631 embryonic Kc167    841 embryonic S1    813 embryonic S3    890 leg disc CME L1    1311 wing disc CME-W2    782 wing disc ML-DmD8    1474 wing disc ML-DmD9    1038 wing disc ML-DmD16-c3    904 wing disc ML-DmD21    1739 wing disc ML-DmD32    757 haltere disc ML-DmD17-c3    666 eye-antennal disc ML-DmD11    1216 antennal disc ML-DmD20-c5    1376 mixed discs ML-DmD4-c1    1217 CNS ML-DmBG1-c1    1302 CNS ML-DmBG2-c2    1538 tumorous blood cells mbn2    911 ovary fGS/OSS    591 ovary OSC    366 ovary OSS    239 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (1855) Schneider line 2 Sg4  (1232) embryonic 1182-4H  (1047) embryonic GM2  (631) embryonic Kc167  (841) embryonic S1  (813) embryonic S3  (890) leg disc CME L1  (1311) wing disc CME-W2  (782) wing disc ML-DmD8  (1474) wing disc ML-DmD9  (1038) wing disc ML-DmD16-c3  (904) wing disc ML-DmD21  (1739) wing disc ML-DmD32  (757) haltere disc ML-DmD17-c3  (666) eye-antennal disc ML-DmD11  (1216) antennal disc ML-DmD20-c5  (1376) mixed discs ML-DmD4-c1  (1217) CNS ML-DmBG1-c1  (1302) CNS ML-DmBG2-c2  (1538) tumorous blood cells mbn2  (911) ovary fGS/OSS  (591) ovary OSC  (366) ovary OSS  (239) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (1855) Schneider line 2 Sg4  (1232) embryonic 1182-4H  (1047) embryonic GM2  (631) embryonic Kc167  (841) embryonic S1  (813) embryonic S3  (890) leg disc CME L1  (1311) wing disc CME-W2  (782) wing disc ML-DmD8  (1474) wing disc ML-DmD9  (1038) wing disc ML-DmD16-c3  (904) wing disc ML-DmD21  (1739) wing disc ML-DmD32  (757) haltere disc ML-DmD17-c3  (666) eye-antennal disc ML-DmD11  (1216) antennal disc ML-DmD20-c5  (1376) mixed discs ML-DmD4-c1  (1217) CNS ML-DmBG1-c1  (1302) CNS ML-DmBG2-c2  (1538) tumorous blood cells mbn2  (911) ovary fGS/OSS  (591) ovary OSC  (366) ovary OSS  (239) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    1855 Schneider line 2 Sg4    1232 embryonic 1182-4H    1047 embryonic GM2    631 embryonic Kc167    841 embryonic S1    813 embryonic S3    890 leg disc CME L1    1311 wing disc CME-W2    782 wing disc ML-DmD8    1474 wing disc ML-DmD9    1038 wing disc ML-DmD16-c3    904 wing disc ML-DmD21    1739 wing disc ML-DmD32    757 haltere disc ML-DmD17-c3    666 eye-antennal disc ML-DmD11    1216 antennal disc ML-DmD20-c5    1376 mixed discs ML-DmD4-c1    1217 CNS ML-DmBG1-c1    1302 CNS ML-DmBG2-c2    1538 tumorous blood cells mbn2    911 ovary fGS/OSS    591 ovary OSC    366 ovary OSS    239 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    343 cold shock, 4-day adult    253 heat shock, 4-day adult    609 Cadmium 50 mM 6 hrs, larvae L3    666 Cadmium 50 mM 12 hrs, larvae L3    616 Cadmium 50 mM 48 hrs, 4-day adult    436 Cadmium 100 mM 48 hrs, 4-day adult    361 Copper 0.5 mM 12 hrs, larvae L3    427 Copper 15 mM 48 hrs, 4-day adult    118 Zinc 5 mM 12 hrs, larvae L3    261 Zinc 4.5 mM 48 hrs, 4-day adult    162 Ethanol 2.5% 3 hrs, larvae L3    658 Ethanol 5% 3 hrs, larvae L3    572 Ethanol 10% 3 hrs, larvae L3    612 Caffeine 1.5 mg/ml 4 hrs, larvae L3    570 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    407 Caffeine 25 mg/ml 48 hrs, 4-day adult    227 Paraquat 5 mM 48 hrs, 4-day adult    457 Paraquat 10 mM 48 hrs, 4-day adult    609 Rotenone 2 μg 12 hrs, larvae L3    634 Rotenone 8 μg 12 hrs, larvae L3    793 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (343) cold shock, 4-day adult  (253) heat shock, 4-day adult  (609) Cadmium 50 mM 6 hrs, larvae L3  (666) Cadmium 50 mM 12 hrs, larvae L3  (616) Cadmium 50 mM 48 hrs, 4-day adult  (436) Cadmium 100 mM 48 hrs, 4-day adult  (361) Copper 0.5 mM 12 hrs, larvae L3  (427) Copper 15 mM 48 hrs, 4-day adult  (118) Zinc 5 mM 12 hrs, larvae L3  (261) Zinc 4.5 mM 48 hrs, 4-day adult  (162) Ethanol 2.5% 3 hrs, larvae L3  (658) Ethanol 5% 3 hrs, larvae L3  (572) Ethanol 10% 3 hrs, larvae L3  (612) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (570) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (407) Caffeine 25 mg/ml 48 hrs, 4-day adult  (227) Paraquat 5 mM 48 hrs, 4-day adult  (457) Paraquat 10 mM 48 hrs, 4-day adult  (609) Rotenone 2 μg 12 hrs, larvae L3  (634) Rotenone 8 μg 12 hrs, larvae L3  (793) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (343) cold shock, 4-day adult  (253) heat shock, 4-day adult  (609) Cadmium 50 mM 6 hrs, larvae L3  (666) Cadmium 50 mM 12 hrs, larvae L3  (616) Cadmium 50 mM 48 hrs, 4-day adult  (436) Cadmium 100 mM 48 hrs, 4-day adult  (361) Copper 0.5 mM 12 hrs, larvae L3  (427) Copper 15 mM 48 hrs, 4-day adult  (118) Zinc 5 mM 12 hrs, larvae L3  (261) Zinc 4.5 mM 48 hrs, 4-day adult  (162) Ethanol 2.5% 3 hrs, larvae L3  (658) Ethanol 5% 3 hrs, larvae L3  (572) Ethanol 10% 3 hrs, larvae L3  (612) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (570) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (407) Caffeine 25 mg/ml 48 hrs, 4-day adult  (227) Paraquat 5 mM 48 hrs, 4-day adult  (457) Paraquat 10 mM 48 hrs, 4-day adult  (609) Rotenone 2 μg 12 hrs, larvae L3  (634) Rotenone 8 μg 12 hrs, larvae L3  (793) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    343 cold shock, 4-day adult    253 heat shock, 4-day adult    609 Cadmium 50 mM 6 hrs, larvae L3    666 Cadmium 50 mM 12 hrs, larvae L3    616 Cadmium 50 mM 48 hrs, 4-day adult    436 Cadmium 100 mM 48 hrs, 4-day adult    361 Copper 0.5 mM 12 hrs, larvae L3    427 Copper 15 mM 48 hrs, 4-day adult    118 Zinc 5 mM 12 hrs, larvae L3    261 Zinc 4.5 mM 48 hrs, 4-day adult    162 Ethanol 2.5% 3 hrs, larvae L3    658 Ethanol 5% 3 hrs, larvae L3    572 Ethanol 10% 3 hrs, larvae L3    612 Caffeine 1.5 mg/ml 4 hrs, larvae L3    570 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    407 Caffeine 25 mg/ml 48 hrs, 4-day adult    227 Paraquat 5 mM 48 hrs, 4-day adult    457 Paraquat 10 mM 48 hrs, 4-day adult    609 Rotenone 2 μg 12 hrs, larvae L3    634 Rotenone 8 μg 12 hrs, larvae L3    793 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    343 cold shock, 4-day adult    253 heat shock, 4-day adult    609 Cadmium 50 mM 6 hrs, larvae L3    666 Cadmium 50 mM 12 hrs, larvae L3    616 Cadmium 50 mM 48 hrs, 4-day adult    436 Cadmium 100 mM 48 hrs, 4-day adult    361 Copper 0.5 mM 12 hrs, larvae L3    427 Copper 15 mM 48 hrs, 4-day adult    118 Zinc 5 mM 12 hrs, larvae L3    261 Zinc 4.5 mM 48 hrs, 4-day adult    162 Ethanol 2.5% 3 hrs, larvae L3    658 Ethanol 5% 3 hrs, larvae L3    572 Ethanol 10% 3 hrs, larvae L3    612 Caffeine 1.5 mg/ml 4 hrs, larvae L3    570 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    407 Caffeine 25 mg/ml 48 hrs, 4-day adult    227 Paraquat 5 mM 48 hrs, 4-day adult    457 Paraquat 10 mM 48 hrs, 4-day adult    609 Rotenone 2 μg 12 hrs, larvae L3    634 Rotenone 8 μg 12 hrs, larvae L3    793 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (343) cold shock, 4-day adult  (253) heat shock, 4-day adult  (609) Cadmium 50 mM 6 hrs, larvae L3  (666) Cadmium 50 mM 12 hrs, larvae L3  (616) Cadmium 50 mM 48 hrs, 4-day adult  (436) Cadmium 100 mM 48 hrs, 4-day adult  (361) Copper 0.5 mM 12 hrs, larvae L3  (427) Copper 15 mM 48 hrs, 4-day adult  (118) Zinc 5 mM 12 hrs, larvae L3  (261) Zinc 4.5 mM 48 hrs, 4-day adult  (162) Ethanol 2.5% 3 hrs, larvae L3  (658) Ethanol 5% 3 hrs, larvae L3  (572) Ethanol 10% 3 hrs, larvae L3  (612) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (570) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (407) Caffeine 25 mg/ml 48 hrs, 4-day adult  (227) Paraquat 5 mM 48 hrs, 4-day adult  (457) Paraquat 10 mM 48 hrs, 4-day adult  (609) Rotenone 2 μg 12 hrs, larvae L3  (634) Rotenone 8 μg 12 hrs, larvae L3  (793) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (343) cold shock, 4-day adult  (253) heat shock, 4-day adult  (609) Cadmium 50 mM 6 hrs, larvae L3  (666) Cadmium 50 mM 12 hrs, larvae L3  (616) Cadmium 50 mM 48 hrs, 4-day adult  (436) Cadmium 100 mM 48 hrs, 4-day adult  (361) Copper 0.5 mM 12 hrs, larvae L3  (427) Copper 15 mM 48 hrs, 4-day adult  118 Zinc 5 mM 12 hrs, larvae L3  (261) Zinc 4.5 mM 48 hrs, 4-day adult  (162) Ethanol 2.5% 3 hrs, larvae L3  (658) Ethanol 5% 3 hrs, larvae L3  (572) Ethanol 10% 3 hrs, larvae L3  (612) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (570) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (407) Caffeine 25 mg/ml 48 hrs, 4-day adult  (227) Paraquat 5 mM 48 hrs, 4-day adult  (457) Paraquat 10 mM 48 hrs, 4-day adult  (609) Rotenone 2 μg 12 hrs, larvae L3  (634) Rotenone 8 μg 12 hrs, larvae L3  (793) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    343 cold shock, 4-day adult    253 heat shock, 4-day adult    609 Cadmium 50 mM 6 hrs, larvae L3    666 Cadmium 50 mM 12 hrs, larvae L3    616 Cadmium 50 mM 48 hrs, 4-day adult    436 Cadmium 100 mM 48 hrs, 4-day adult    361 Copper 0.5 mM 12 hrs, larvae L3    427 Copper 15 mM 48 hrs, 4-day adult    118 Zinc 5 mM 12 hrs, larvae L3    261 Zinc 4.5 mM 48 hrs, 4-day adult    162 Ethanol 2.5% 3 hrs, larvae L3    658 Ethanol 5% 3 hrs, larvae L3    572 Ethanol 10% 3 hrs, larvae L3    612 Caffeine 1.5 mg/ml 4 hrs, larvae L3    570 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    407 Caffeine 25 mg/ml 48 hrs, 4-day adult    227 Paraquat 5 mM 48 hrs, 4-day adult    457 Paraquat 10 mM 48 hrs, 4-day adult    609 Rotenone 2 μg 12 hrs, larvae L3    634 Rotenone 8 μg 12 hrs, larvae L3    793 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_22 mE1_20_mRNA_expression_cluster_01
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033912 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8415-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL4pnr-MD237 RpS23GD12525 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of RpS23 Class Mutagen Stocks Known lesion RpS23EP638 P-element activity 1 Yes RpS23KG07144 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of RpS23 Class Mutagen Stocks Known lesion RpS23GD12525 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes RpS23GD17535 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes RpS23dsRNA.cLa in vitro construct - RNAi 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)BSC134 (Christensen and Cook, 2006.3.8)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD12525} NA P{GD17535} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{SUPor-P}RpS23KG07144 NA insertion of mobile activating element P{EP}RpS23EP638 NA
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 4 terms )
Molecular Function
CV term Evidence References
structural constituent of ribosome inferred from direct assay (Alonso and Santaren, 2006)
Biological Process
CV term Evidence References
centrosome duplication inferred from mutant phenotype (Müller et al., 2010) centrosome organization inferred from mutant phenotype (Müller et al., 2010)
Cellular Component
CV term Evidence References
ribosome inferred from direct assay (Alonso and Santaren, 2006)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
structural constituent of ribosome inferred from sequence or structural similarity with UniProtKB:P90707 (FlyBase, 1992-)
Biological Process
CV term Evidence References
translation inferred from sequence or structural similarity with UniProtKB:P90707 (FlyBase, 1992-)
Cellular Component
CV term Evidence References
cytosolic small ribosomal subunit inferred from sequence or structural similarity with UniProtKB:P90707 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions RpS23 allele Gene References RpS23EP638 Syx1A (van Swinderen and Greenspan, 2005) unspecified aop (van Swinderen and Greenspan, 2005) EP454 (van Swinderen and Greenspan, 2005) EP1244 (van Swinderen and Greenspan, 2005) kis (van Swinderen and Greenspan, 2005) Pdk (van Swinderen and Greenspan, 2005)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 62326 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0033912 DroID - A comprehensive database of gene and protein interactions. • FBgn0033912 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36576
Orthologs
OrthoDB Orthologs (47) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6BG9GM Dipteran inclusive ortholog search EOG6B2T6J Insect inclusive ortholog search EOG6VHJ3Z Arthropod inclusive ortholog search EOG6NP5M1 Metazoa inclusive ortholog search EOG6K13HH
Orthologs in Drosophila Species (EOG6BG9GM)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\RpS23     Drosophila simulans   Dsim\GD25696 Y   Drosophila sechellia   Dsec\GM20223 Y   Drosophila erecta   Dere\GG22436 Y   Drosophila yakuba   Dyak\GE12328 Y   Drosophila ananassae   Dana\GF12897 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA21060 Y   Drosophila persimilis   Dper\GL17287 Y   Drosophila willistoni   Dwil\GK21747 Y   Drosophila virilis   Dvir\GJ22302 Y   Drosophila mojavensis   Dmoj\GI20452 Y   Drosophila grimshawi   Dgri\GH20043 Y
Orthologs in non-Drosophila Dipterans (EOG6B2T6J)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL012686   Anopheles gambiae Malaria mosquito  Agam\AGAP012990   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ001218
Orthologs in non-Dipteran Insects (EOG6VHJ3Z)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC552272   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG008045   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH16149   Atta cephalotes Leafcutter ant  Acep\ACEP18365   Camponotus floridanus Florida carpenter ant  Cflo\CFLO16602   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12410   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12414   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12411   Linepithema humile Argentine ant  Lhum\LH11401   Linepithema humile Argentine ant  Lhum\LH23359   Pogonomyrmex barbatus Red harvester ant  Pbar\PB21395   Solenopsis invicta Red fire ant  Sinv\SINV18012   Acyrthosiphon pisum Pea aphid  Apim\ACYPI000819   Bombyx mori Silkmoth  Bmor\BGIBMGA007645   Pediculus humanus Human body louse  Phum\PHUM613150   Pediculus humanus Human body louse  Phum\PHUM613130   Tribolium castaneum Red flour beetle  Tcas\TC004462
Orthologs in non-Insect Arthropods (EOG6NP5M1)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\GLB1   Ixodes scapularis Deer tick  Isca\ISCW012634
Orthologs in non-Arthropod Metazoa (EOG6K13HH)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\rps-23   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_026541gn   Danio rerio Zebrafish  Drer\rps23   Xenopus tropicalis Western clawed frog  Xtro\rps23   Gallus gallus Domestic chicken  Ggal\RPS23   Mus musculus House mouse  Mmus\Rps23   Mus musculus House mouse  Mmus\Gm9372   Mus musculus House mouse  Mmus\Gm8618   Rattus norvegicus Norway rat  Rnor\Rps23   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000024169   Rattus norvegicus Norway rat  Rnor\RGD1563570   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000031483   Homo sapiens Human  Hsap\RPS23
Human Orthologs (1)
Gene OMIM HGNC Hsap\RPS23
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD25696 Drosophila sechellia Dsec\GM20223 Drosophila erecta Dere\GG22436 Drosophila yakuba Dyak\GE12328 Drosophila ananassae Dana\GF12897 Drosophila pseudoobscura pseudoobscura Dpse\GA21060 Drosophila persimilis Dper\GL17287 Drosophila willistoni Dwil\GK21747 Drosophila virilis Dvir\GJ22302 Drosophila mojavensis Dmoj\GI20452 Drosophila grimshawi Dgri\GH20043
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	14519 y1 w67c23; P{SUPor-P}RpS23KG07144
Kyoto	122024 w1118; P{EP}RpS23EP638
VDRC	v35421 w1118; P{GD12525}v35421 v35422 w1118; P{GD12525}v35422 v50526 w1118; P{GD17535}v50526
Genomic Clones ( 1 )
	BACR30O03 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 547 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM14585
Other clones	yak-ad_CG8415 yak-em_CG8415
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH01109 GH04372 GH05877 GH09696 GH11203 GH11557 GH13391 GH17673 GH23201 GH25588 GM02210 GM12234 GM12678 GM13518 GM14609 GM16043 GM18382 GM19282 GM20971 GM21040 GM21248 GM21961 GM24007 GM24727 GM25404 GM25431 GM25711 GM27967 GM28129 GM29315 GM30307 GM30806 GM31012 GM31433 GM31809 LD03556 LD41845 LP03651 LP04879 LP04968 LP04973 LP05878 LP12755 RE07872 RE09690 RE32101 RE48776 RE50676 RE62455 RE66334 RH03296 RH07042 RH07149 RH13112 RH13472 RH13507 RH13519 RH14046 RH14367 RH15189 RH15407 RH15908 RH16115 RH16164 RH16283 RH16992 RH18186 RH24129 RH25694 RH32063 RH34930 RH40652 RH41932 RH42194 RH42350 RH42654 RH42991 RH43144 RH43255 RH43602 RH44604 RH44655 RH44685 RH47226 RH47813 RH47901 RH48254 RH48480 RH49926 RH49993 RH50368 RH51738 RH51907 RH51942 RH55641 RH56543 RH56643 RH57637 RH57943 RH57986 RH59054 RH59187 RH60392 RH60451 RH60722 RH61603 RH64108 RH64681 RH65875 RH65960 RH66478 RH66669 RH67969 RH69067 RH69402 RH71116 RH71478 RH72324 RH72407 RH73203 RH73232 RH73948 RH74462 SD03248 SD03690 SD04596 SD04895 SD12595 SD14128 SD14966 SD18018 SD18049 SD19787 SD23739 SD24062
Other clones	32048 62435 74138 107242 153973 194665 473700 522563 522599 524052 524101 524372 525698 525709 527018 527879 533843 533926 534041 542898 556902 557068 557110 557715 557810 569025 569135 569136 569253 569821 572936 bs32a12 CK01.66A.B8 CK01.119C.F12 Dmel_dig_000596_0704_3693 Dmel_dig_001307_0644_1842 Dmel_dig_001906_0664_0475 Dmel_dig_002086_0701_2152 Dmel_dig_002549_0637_3611 Dmel_dig_002738_0688_0306 Dmel_dig_002987_0681_0448 Dmel_dig_003305_0712_1773 Dmel_dig_003412_0649_1952 Dmel_dig_003471_0632_3451 Dmel_dig_003651_0699_2048 Dmel_dig_003759_0641_1451 Dmel_dig_003797_0654_1870 Dmel_dig_005025_0717_0962 Dmel_dig_005066_0664_2483 Dmel_dig_005386_0695_1945 Dmel_dig_005740_0589_1564 Dmel_dig_006216_0675_0871 Dmel_dig_006251_0712_2606 Dmel_dig_006808_0682_0426 Dmel_dig_007668_0614_0536 Dmel_dig_008512_0635_0660 Dmel_dig_008600_0705_2211 Dmel_dig_008744_0659_2364 Dmel_dig_009020_0638_3102 Dmel_dig_009075_0694_1055 Dmel_dig_009420_0695_2860 Dmel_dig_009679_0676_1348 Dmel_dig_009876_0709_0658 Dmel_dig_009918_0616_2685 Dmel_dig_009951_0590_3199 Dmel_dig_010763_0611_0936 Dmel_dig_010764_0678_0993 Dmel_dig_011101_0592_3024 Dmel_dig_013169_0713_2055 Dmel_dig_013389_0678_3209 Dmel_dig_013543_0615_2804 Dmel_dig_013973_0637_2959 Dmel_dig_014217_0655_2557 Dmel_dig_014333_0659_3225 Dmel_dig_014579_0624_2754 Dmel_dig_015101_0672_1852 Dmel_dig_016240_0665_0647 Dmel_dig_017805_0666_3288 Dmel_dig_018141_0580_2493 Dmel_dig_018635_0702_1499 Dmel_dig_020038_0584_2855 Dmel_dig_020522_0618_1723 Dmel_dig_020934_0582_1585 Dmel_neb_001484_0421_0375 Dmel_neb_007592_0678_0831 Dmel_neb_010036_0837_3395 Dmel_neb_010066_0865_2306 Dmel_neb_010855_0841_0611 Dmel_neb_011375_0134_1344 Dmel_neb_011650_0393_0578 Dmel_neb_011878_0571_1849 Dmel_neb_012745_0830_1992 Dmel_neb_013571_0688_2132 Dmel_neb_013674_0583_1826 Dmel_neb_013770_0327_1697 Dmel_neb_013811_0092_2901 Dmel_neb_013845_0862_3156 Dmel_neb_014466_0391_2270 Dmel_neb_014654_0859_1091 Dmel_neb_014778_0155_2719 Dmel_neb_014862_0883_2356 Dmel_neb_014863_0626_1663 Dmel_neb_014969_0681_2867 Dmel_neb_015119_0587_0869 Dmel_neb_015131_0092_0762 Dmel_neb_015447_0915_1078 Dmel_neb_016384_0858_2261 EC00790 EC14432 EC15188 EC22188 EC22326 EC26287 EC26456 EC27873 EC28309 EC28439 EC28823 EC30608 EC31170 EC31183 EC33327 EC33581 EC36708 EC37287 EC37456 EC39764 EC40564 EK091254 EK142552 EK163918 EK187806 EK188234 EN00547 EN02350 EN02429 EN02648 EN04750 EN04808 EN05249 EN06962 EN07134 EN10131 EN10252 EN10307 EN11009 EN11551 EN11645 EN11957 EN12051 EN12245 EN12438 EN13201 EN14361 EN14618 EN14619 EN14833 EN15660 EN17539 ESG0117d.B21_E03 ESG0119b.B21_B04 ESG0119c.B21_D07 FGC005G06 FGC017D03 FGC019D08 FGC019H04 FGC028B04 FGC029F05 FGH101E09 FGH101F11 FGH108G04 FGH124H03 FGM105B04 FGM223C11 FGM225C07 FGM229B11 FGM307B07 FGM319D05 FGX001C08 IP07147 IP18350 LD06329 LD30928 LP22745 RE02315 RE04521 RE05382 RE06625 RE07567 RE08047 RE08374 RE08471 RE08539 RE08909 RE08927 RE09944 RE10053 RE12267 RE12268 RE14466 RE15358 RE16137 RE18133 RE19041 RE19142 RE22308 RE23447 RE23746 RE24342 RE25331 RE25457 RE28155 RE29129 RE29465 RE29953 RE30053 RE30201 RE30749 RE31252 RE32045 RE32319 RE32910 RE34758 RE35084 RE37209 RE39710 RE40196 RE40824 RE41514 RE42145 RE42357 RE43001 RE43054 RE43988 RE44772 RE45793 RE45794 RE46077 RE46646 RE47393 RE49145 RE49737 RE49839 RE53065 RE53372 RE55585 RE57461 RE58435 RE62361 RE62961 RE63110 RE64553 RE65088 RE65964 RE66514 RE68563 RE69586 RE69958 RE70826 RE71025 RE71704 RE71888 RE72572 RE73007 RE74010 RH01056 RH01279 RH01301 RH01401 RH01415 RH01475 RH01644 RH02514 RH02746 RH04210 RH04815 RH04857 RH04952 RH04986 RH05239 RH05962 RH06047 RH06085 RH06521 RH06550 RH06883 RH06911 RH08370 RH08711 RH08732 RH08927 RH09192 RH09303 RH09931 RH10584 RH11123 RH11262 RH11556 RH11854 RH12158 RH12287 RH14490 RH14563 RH15429 RH17525 RH18881 RH19023 RH19034 RH19044 RH19601 RH19692 RH19869 RH19930 RH20021 RH20045 RH20406 RH20533 RH21385 RH22961 RH23076 RH23609 RH23808 RH23810 RH24507 RH24684 RH25664 RH26005 RH26061 RH26341 RH26526 RH26887 RH26955 RH27034 RH27073 RH27108 RH27327 RH27517 RH27561 RH28620 RH29387 RH29618 RH29827 RH30006 RH30114 RH30451 RH30595 RH30640 RH31008 RH31038 RH31314 RH31415 RH31427 RH31459 RH31703 RH32377 RH32564 RH32608 RH33178 RH33653 RH34130 RH34322 RH34770 RH34983 RH35727 RH36461 RH37070 RH38152 RH38202 RH38284 RH39411 RH39576 RH39814 RH39887 RH40591 RH43245 RH44249 RH44539 RH44812 RH46653 RH48179 RH48389 RH49749 RH50043 RH50751 RH51040 RH52591 RH53064 RH55048 RH55075 RH55112 RH58042 RH60432 RH60926 RH61172 RH62256 RH63145 RH63252 RH63326 RH64143 RH64705 RH64941 RH67092 RH67333 RH67696 RH70081 RH70605 RH70629 RH74163 UUGC0453
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0033912 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36576
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG8415 anon-EST:Posey158 anon-EST:Posey63 (Bayraktaroglu, 2000.11.2)
Additional comments	"RpS23" likely corresponds to "M(2)50E". (Marygold et al., 2007)
Other Comments
	Likely Minute gene. (Marygold et al., 2007) Deletions removing RpS23 but no other cytoplasmic ribosomal protein-encoding genes show Minute phenotypes. (Marygold et al., 2007)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_137095 RefSeq (Proteins) • NP_610939 DDBJ / EMBL / GenBank • AA803905 AAF58277 AAL90261 AF083281 AF083288 AI387216 AI946864 AQ026461 AW941395 AY089523 BH854646 BH854647 Entrez Gene - A searchable database of RefSeq genes. • 36576 UniProtKB/Swiss-Prot • Q8T3U2
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein S23, eukaryotic/archaeal (IPR005680) Ribosomal protein S12/S23 (IPR006032) Nucleic acid-binding, OB-fold (IPR012340)
Linkouts
	BioGRID - A database of protein and genetic interactions • 62326 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0033912 DroID - A comprehensive database of gene and protein interactions. • FBgn0033912 DRSC - Results from RNAi screens. • FBgn0033912 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033912 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8415-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0033912 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36576 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36576 modMine - Data generated by the modENCODE project. • FBgn0033912
Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym	anon-EST:Posey63   anon-EST:Posey158   CG8415 (van Swinderen and Greenspan, 2005, Levis, 2001.2.6, Levis, 2001.2.1, Robertson, 2000.12.3, Marygold et al., 2007, Cammarato et al., 2011) CT24703 (Lum et al., 2003) RpS23 (Daneshvar et al., 2013, Knowles-Barley et al., 2010, Kallappagoudar et al., 2010, Nie et al., 2009, Marygold et al., 2007, Dichtel-Danjoy et al., 2009, Zsindely et al., 2009, Reis et al., 2010, Cook et al., 2012) Rp S23 (Alonso and Santaren, 2006)
Name Synonym	Ribosomal protein S23 (Ashburner and Marygold, 2004.7.2, Cammarato et al., 2011) ribosomal protein S23 (Zsindely et al., 2009)
Secondary FlyBase IDs
	FBgn0026271 FBgn0026280
References ( 35 )
Generate a list of	All references relating to this gene ( 35 )
List References by type	Research paper  ( 15 ) Supplementary material  ( 5 ) Personal communication to FlyBase  ( 11 ) FlyBase analysis  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 3 )
	Daneshvar et al., 2013, Biol. Open 2(1): 1--9 MicroRNA miR-308 regulates dMyc through a negative feedback loop in Drosophila. [FBrf0220584] Cook et al., 2012, Genome Biol. 13(3): R21 The generation of chromosomal deletions to provide extensive coverage and subdivision of the Drosophila melanogaster genome. [FBrf0219066] Booker et al., 2011, BMC Genomics 12: 50 False negative rates in Drosophila cell-based RNAi screens: a case study. [FBrf0212969] Show all research papers ...