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Gene Dmel\row

General Information
Symbol	Dmel\row	Species	D. melanogaster
Name	relative of woc	Annotation symbol	CG8092
Feature type	protein_coding_gene	FlyBase ID	FBgn0033998
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	51E5-51E7	Sequence location	2R:11,094,032..11,101,139 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene relative of woc is referred to in FlyBase by the symbol Dmel\row (CG8092, FBgn0033998). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding; chromatin binding. There is experimental evidence that it is involved in the biological process: regulation of transcription, DNA-dependent; regulation of transcription from RNA polymerase II promoter. 7 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: AT hook, DNA-binding motif; Zinc finger, C2H2; Zinc finger, C2H2-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval carcass. Gene sequence location is 2R:11094032..11101139.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 51E5-51E7   Limits computationally determined from genome sequence between P{PZ}chn02064 and P{PZ}scb01288
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\row for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	gene_with_stop_codon_read_through ; SO:0000697 Stop-codon suppression (UGA) postulated; FBrf0216884 Gene model reviewed during 5.44 Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) row-RA FBtr0087402  NM_137175   4414   1281 row-RB FBtr0087403  NM_166081   2281   602 row-RC FBtr0329939  NM_001274063   4414   1301
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein row-PA   FBpp0086533   143.7   1281   7.97     NP_611019   AAF58164 row-PB   FBpp0086534   67.0   602   10.02     NP_725441   AAM68525 row-PC   FBpp0302971   146.2   1301   8.13     NP_001260992   AGB93524
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, C2H2 (IPR007087) AT hook, DNA-binding motif (IPR017956) Zinc finger, C2H2-like (IPR015880)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA263326   AA391164   AA391643   AA391960   AA440002   AA539581   AA695725   AA696961   AA735603   AA802245   AA802940   AA816762   AA820795   AA949874   AA951648   AA990688   AE013599 AAF58164   AE013599 AAM68525   AE013599 AGB93524   AI135067   AI455789   AI455953   AI456013   AI456254   AI456454   AI514398   AI514534   AI518113   AI518759   AI519187   AI520643   AI532493   AI546423   AW942596   AW943548   AX094070   AY051927 AAK93351   AY061301 AAL28849   BE976053   BG635414   BH615032   BI162710   BI162711   BI239626   BI355033   BI371778   BI371785   BP548325   BP551556   BT016036   CK657181   CO179484   CO266761   CO269401   CO271707   CO273794   CO278999   CO285638   CO297513   CO300692   CO301027   CO304192   CO308980   CO309012   CO315319   CO317541   CO321155   EC053698   EC056238   EC057256   EC059728   EC062520   EC071298   EC071627   EC077766   EC081356   EC089231   EC203843   EC210136   EC210462   EC213869   EC215465   EC234612   EC237047   EC243908   EC245830   EV594319   EV597406   EV598893   EV599748   GH947518   GH948005   GH950110   GH950551   GH952630   GH953962   GH954454   GH956406   GH957581   GH961561   GH961786   GH962080   GH964998   GH965649   GH967279   GH967609   GH970572   GH970620   GH970782   GH973642   GH978265   GH978796   GH978907   GH979191
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q95RL2 Q5U156 Q960P7
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism | ubiquitous   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   anlage in statu nascendi   (Fisher et al., 2012) mesoderm anlage   (Fisher et al., 2012) Comment:anlage in statu nascendi organism | ubiquitous   (Fisher et al., 2012) ventral ectoderm anlage   (Fisher et al., 2012) Comment:anlage in statu nascendi embryonic stage 7 -- 8   antennal anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage central brain anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage dorsal head epidermis anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage visual anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage anterior endoderm anlage   (Fisher et al., 2012) foregut anlage   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) hindgut anlage   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) ventral ectoderm   (Fisher et al., 2012) ventral nerve cord primordium   (Fisher et al., 2012) Comment:reported as ventral nerve cord anlage embryonic stage 9 -- 10   antennal primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium central brain primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium visual primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium dorsal head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium lateral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium ventral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium anterior endoderm   (Fisher et al., 2012) foregut primordium   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) inclusive hindgut primordium   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) ventral ectoderm   (Fisher et al., 2012) ventral nerve cord primordium   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) central brain primordium   (Fisher et al., 2012) dorsal pharyngeal muscle primordium   (Fisher et al., 2012) foregut primordium   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) hindgut proper primordium   (Fisher et al., 2012) lateral cord neuron   (Fisher et al., 2012) longitudinal visceral muscle primordium   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) somatic muscle primordium   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) ventral nerve cord primordium   (Fisher et al., 2012) visceral muscle primordium   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic anal pad   (Fisher et al., 2012) embryonic brain   (Fisher et al., 2012) embryonic hindgut   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval nervous system   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) ventral nerve cord   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
colocalizes_with euchromatin inferred from direct assay (Font-Burgada et al., 2008) nucleus inferred from direct assay (Font-Burgada et al., 2008) protein complex inferred from direct assay (Abel et al., 2009)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    41 central nervous system, larvae L3    42 central nervous system, pupae P8    17 head, virgin 1-day female    7 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    5 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    8 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    8 fat body, pupae P8    7 carcass, larvae L3 wandering    28 carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female    37 ovary, mated 4-day female    32 testis, mated 4-day male    3 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (41) central nervous system, larvae L3  (42) central nervous system, pupae P8    17 head, virgin 1-day female    7 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    5 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    8 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    8 fat body, pupae P8    7 carcass, larvae L3 wandering  (28) carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female  (37) ovary, mated 4-day female  (32) testis, mated 4-day male    3 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    41 central nervous system, larvae L3    42 central nervous system, pupae P8    17 head, virgin 1-day female    7 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    5 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    8 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    8 fat body, pupae P8    7 carcass, larvae L3 wandering    28 carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female    37 ovary, mated 4-day female    32 testis, mated 4-day male    3 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    41 central nervous system, larvae L3    42 central nervous system, pupae P8    17 head, virgin 1-day female    7 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    5 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    8 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    8 fat body, pupae P8    7 carcass, larvae L3 wandering    28 carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female    37 ovary, mated 4-day female    32 testis, mated 4-day male    3 accessory gland, mated 4-day male    7 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    41 central nervous system, larvae L3    42 central nervous system, pupae P8    17 head, virgin 1-day female    7 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    5 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    8 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    8 fat body, pupae P8    7 carcass, larvae L3 wandering    28 carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female    37 ovary, mated 4-day female    32 testis, mated 4-day male    3 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (41) central nervous system, larvae L3  (42) central nervous system, pupae P8    17 head, virgin 1-day female    7 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    5 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    8 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    8 fat body, pupae P8    7 carcass, larvae L3 wandering  28 carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female  (37) ovary, mated 4-day female  32 testis, mated 4-day male    3 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    41 central nervous system, larvae L3    42 central nervous system, pupae P8    17 head, virgin 1-day female    7 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    5 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    8 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    8 fat body, pupae P8    7 carcass, larvae L3 wandering    28 carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female    37 ovary, mated 4-day female    32 testis, mated 4-day male    3 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    41 central nervous system, larvae L3    42 central nervous system, pupae P8    17 head, virgin 1-day female    7 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    6 head, mated 4-day female    5 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    8 digestive system, 1-day adult    5 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    3 fat body, white prepupae    8 fat body, pupae P8    7 carcass, larvae L3 wandering    28 carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    5 ovary, virgin 4-day female    37 ovary, mated 4-day female    32 testis, mated 4-day male    3 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    63 embryo 04-06hr    67 embryo 06-08hr    67 embryo 08-10hr    53 embryo 10-12hr    34 embryo 12-14hr    36 embryo 14-16hr    25 embryo 16-18hr    20 embryo 18-20hr    13 embryo 20-22hr    20 embryo 22-24hr    18 larva L1    13 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    20 larva L3 puffstage 7-9    23 white prepupae new    23 white prepupae 12hr    22 white prepupae 24hr    32 pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    7 adult male 30day    8 adult female 01day    17 adult female 05day    27 adult female 30day    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (40) embryo 02-04hr  (63) embryo 04-06hr  (67) embryo 06-08hr  (67) embryo 08-10hr  (53) embryo 10-12hr  (34) embryo 12-14hr  (36) embryo 14-16hr    25 embryo 16-18hr    20 embryo 18-20hr    13 embryo 20-22hr    20 embryo 22-24hr    18 larva L1    13 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    20 larva L3 puffstage 7-9    23 white prepupae new    23 white prepupae 12hr    22 white prepupae 24hr  (32) pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    7 adult male 30day    8 adult female 01day    17 adult female 05day  (27) adult female 30day  (29) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    63 embryo 04-06hr    67 embryo 06-08hr    67 embryo 08-10hr    53 embryo 10-12hr    34 embryo 12-14hr    36 embryo 14-16hr    25 embryo 16-18hr    20 embryo 18-20hr    13 embryo 20-22hr    20 embryo 22-24hr    18 larva L1    13 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    20 larva L3 puffstage 7-9    23 white prepupae new    23 white prepupae 12hr    22 white prepupae 24hr    32 pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    7 adult male 30day    8 adult female 01day    17 adult female 05day    27 adult female 30day    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    63 embryo 04-06hr    67 embryo 06-08hr    67 embryo 08-10hr    53 embryo 10-12hr    34 embryo 12-14hr    36 embryo 14-16hr    25 embryo 16-18hr    20 embryo 18-20hr    13 embryo 20-22hr    20 embryo 22-24hr    18 larva L1    13 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    20 larva L3 puffstage 7-9    23 white prepupae new    23 white prepupae 12hr    22 white prepupae 24hr    32 pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    7 adult male 30day    8 adult female 01day    17 adult female 05day    27 adult female 30day    29 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    63 embryo 04-06hr    67 embryo 06-08hr    67 embryo 08-10hr    53 embryo 10-12hr    34 embryo 12-14hr    36 embryo 14-16hr    25 embryo 16-18hr    20 embryo 18-20hr    13 embryo 20-22hr    20 embryo 22-24hr    18 larva L1    13 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    20 larva L3 puffstage 7-9    23 white prepupae new    23 white prepupae 12hr    22 white prepupae 24hr    32 pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    7 adult male 30day    8 adult female 01day    17 adult female 05day    27 adult female 30day    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (40) embryo 02-04hr  (63) embryo 04-06hr  (67) embryo 06-08hr  (67) embryo 08-10hr  (53) embryo 10-12hr  (34) embryo 12-14hr  (36) embryo 14-16hr    25 embryo 16-18hr    20 embryo 18-20hr    13 embryo 20-22hr    20 embryo 22-24hr    18 larva L1    13 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    20 larva L3 puffstage 7-9    23 white prepupae new    23 white prepupae 12hr    22 white prepupae 24hr  32 pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    7 adult male 30day    8 adult female 01day    17 adult female 05day  27 adult female 30day  29 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    63 embryo 04-06hr    67 embryo 06-08hr    67 embryo 08-10hr    53 embryo 10-12hr    34 embryo 12-14hr    36 embryo 14-16hr    25 embryo 16-18hr    20 embryo 18-20hr    13 embryo 20-22hr    20 embryo 22-24hr    18 larva L1    13 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    20 larva L3 puffstage 7-9    23 white prepupae new    23 white prepupae 12hr    22 white prepupae 24hr    32 pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    7 adult male 30day    8 adult female 01day    17 adult female 05day    27 adult female 30day    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    40 embryo 02-04hr    63 embryo 04-06hr    67 embryo 06-08hr    67 embryo 08-10hr    53 embryo 10-12hr    34 embryo 12-14hr    36 embryo 14-16hr    25 embryo 16-18hr    20 embryo 18-20hr    13 embryo 20-22hr    20 embryo 22-24hr    18 larva L1    13 larva L2    13 larva L3 12hr old    9 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    20 larva L3 puffstage 7-9    23 white prepupae new    23 white prepupae 12hr    22 white prepupae 24hr    32 pupae 2d postWPP    16 pupae 3d postWPP    9 pupae 4d postWPP    5 adult male 01day    6 adult male 05day    7 adult male 30day    8 adult female 01day    17 adult female 05day    27 adult female 30day    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    37 Schneider line 2 Sg4    22 embryonic 1182-4H    36 embryonic GM2    30 embryonic Kc167    19 embryonic S1    31 embryonic S3    28 leg disc CME L1    31 wing disc CME-W2    21 wing disc ML-DmD8    35 wing disc ML-DmD9    31 wing disc ML-DmD16-c3    34 wing disc ML-DmD21    19 wing disc ML-DmD32    21 haltere disc ML-DmD17-c3    38 eye-antennal disc ML-DmD11    25 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1    26 CNS ML-DmBG1-c1    36 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    28 ovary fGS/OSS    32 ovary OSC    26 ovary OSS    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (37) Schneider line 2 Sg4    22 embryonic 1182-4H  (36) embryonic GM2  (30) embryonic Kc167    19 embryonic S1  (31) embryonic S3  (28) leg disc CME L1  (31) wing disc CME-W2    21 wing disc ML-DmD8  (35) wing disc ML-DmD9  (31) wing disc ML-DmD16-c3  (34) wing disc ML-DmD21    19 wing disc ML-DmD32    21 haltere disc ML-DmD17-c3  (38) eye-antennal disc ML-DmD11    25 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1  26 CNS ML-DmBG1-c1  (36) CNS ML-DmBG2-c2    20 tumorous blood cells mbn2  (28) ovary fGS/OSS  (32) ovary OSC  26 ovary OSS    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    37 Schneider line 2 Sg4    22 embryonic 1182-4H    36 embryonic GM2    30 embryonic Kc167    19 embryonic S1    31 embryonic S3    28 leg disc CME L1    31 wing disc CME-W2    21 wing disc ML-DmD8    35 wing disc ML-DmD9    31 wing disc ML-DmD16-c3    34 wing disc ML-DmD21    19 wing disc ML-DmD32    21 haltere disc ML-DmD17-c3    38 eye-antennal disc ML-DmD11    25 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1    26 CNS ML-DmBG1-c1    36 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    28 ovary fGS/OSS    32 ovary OSC    26 ovary OSS    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    37 Schneider line 2 Sg4    22 embryonic 1182-4H    36 embryonic GM2    30 embryonic Kc167    19 embryonic S1    31 embryonic S3    28 leg disc CME L1    31 wing disc CME-W2    21 wing disc ML-DmD8    35 wing disc ML-DmD9    31 wing disc ML-DmD16-c3    34 wing disc ML-DmD21    19 wing disc ML-DmD32    21 haltere disc ML-DmD17-c3    38 eye-antennal disc ML-DmD11    25 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1    26 CNS ML-DmBG1-c1    36 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    28 ovary fGS/OSS    32 ovary OSC    26 ovary OSS    16 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    37 Schneider line 2 Sg4    22 embryonic 1182-4H    36 embryonic GM2    30 embryonic Kc167    19 embryonic S1    31 embryonic S3    28 leg disc CME L1    31 wing disc CME-W2    21 wing disc ML-DmD8    35 wing disc ML-DmD9    31 wing disc ML-DmD16-c3    34 wing disc ML-DmD21    19 wing disc ML-DmD32    21 haltere disc ML-DmD17-c3    38 eye-antennal disc ML-DmD11    25 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1    26 CNS ML-DmBG1-c1    36 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    28 ovary fGS/OSS    32 ovary OSC    26 ovary OSS    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (37) Schneider line 2 Sg4    22 embryonic 1182-4H  (36) embryonic GM2  30 embryonic Kc167    19 embryonic S1  31 embryonic S3  28 leg disc CME L1  31 wing disc CME-W2    21 wing disc ML-DmD8  (35) wing disc ML-DmD9  31 wing disc ML-DmD16-c3  (34) wing disc ML-DmD21    19 wing disc ML-DmD32    21 haltere disc ML-DmD17-c3  (38) eye-antennal disc ML-DmD11    25 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1  26 CNS ML-DmBG1-c1  (36) CNS ML-DmBG2-c2    20 tumorous blood cells mbn2  28 ovary fGS/OSS  32 ovary OSC  26 ovary OSS    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    37 Schneider line 2 Sg4    22 embryonic 1182-4H    36 embryonic GM2    30 embryonic Kc167    19 embryonic S1    31 embryonic S3    28 leg disc CME L1    31 wing disc CME-W2    21 wing disc ML-DmD8    35 wing disc ML-DmD9    31 wing disc ML-DmD16-c3    34 wing disc ML-DmD21    19 wing disc ML-DmD32    21 haltere disc ML-DmD17-c3    38 eye-antennal disc ML-DmD11    25 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1    26 CNS ML-DmBG1-c1    36 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    28 ovary fGS/OSS    32 ovary OSC    26 ovary OSS    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    37 Schneider line 2 Sg4    22 embryonic 1182-4H    36 embryonic GM2    30 embryonic Kc167    19 embryonic S1    31 embryonic S3    28 leg disc CME L1    31 wing disc CME-W2    21 wing disc ML-DmD8    35 wing disc ML-DmD9    31 wing disc ML-DmD16-c3    34 wing disc ML-DmD21    19 wing disc ML-DmD32    21 haltere disc ML-DmD17-c3    38 eye-antennal disc ML-DmD11    25 antennal disc ML-DmD20-c5    16 mixed discs ML-DmD4-c1    26 CNS ML-DmBG1-c1    36 CNS ML-DmBG2-c2    20 tumorous blood cells mbn2    28 ovary fGS/OSS    32 ovary OSC    26 ovary OSS    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    25 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    25 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    25 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    25 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    25 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    25 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    25 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    9 cold shock, 4-day adult    6 heat shock, 4-day adult    12 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    14 Cadmium 100 mM 48 hrs, 4-day adult    24 Copper 0.5 mM 12 hrs, larvae L3    5 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    8 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    25 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    10 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    19 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_17 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • LD21608 LD41072 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033998 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8092-RB;CG8092-RB;CG8092-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for row Stages(s) 1-3 Stages(s) 4-6 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal rowCB05336 lethal | pupal stage, with Scer\GAL4Act5C.PU rowGD12377 viable rowc00387 viable, with Scer\GAL4pnr-MD237 rowGD12377 Sterility Allele fertile rowc00387 Other Phenotypes Allele planar polarity defective, with Scer\GAL4pnr-MD237 rowGD12377 Phenotype manifest in Allele
Classical Alleles ( 4 )
For All Classical Alleles Show
Allele of row Class Mutagen Stocks Known lesion rowc00387 piggyBac transposase 2 -- row5-SZ-3158 1 -- rowBG02781 P-element activity 1 -- rowCB05336 P-element activity 0 Yes
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of row Class Mutagen Stocks Known lesion rowGD12377 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes rowJF01993 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes rowNIG.8092R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel7135 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{NIG.8092R} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{GT1}rowBG02781 NA P{PTT-GB}rowCB05336 NA P{RS5}row5-SZ-3158 NA PBac{PB}rowc00387 NA insertion of enhancer trap P{lacW}l(2)SH2172SH2172 No
Gene Ontology: Function, Process & Cellular Component ( 9 unique terms )
Terms Based on Experimental Evidence ( 7 terms )
Molecular Function
CV term Evidence References
contributes_to chromatin binding inferred from physical interaction with woc (Font-Burgada et al., 2008) protein binding inferred from physical interaction with HP1c (Abel et al., 2009, Font-Burgada et al., 2008) inferred from physical interaction with woc (Font-Burgada et al., 2008)
Biological Process
CV term Evidence References
regulation of transcription, DNA-dependent inferred from mutant phenotype (Abel et al., 2009) regulation of transcription from RNA polymerase II promoter inferred from mutant phenotype (Font-Burgada et al., 2008)
Cellular Component
CV term Evidence References
colocalizes_with euchromatin inferred from direct assay (Font-Burgada et al., 2008) nucleus inferred from direct assay (Font-Burgada et al., 2008) protein complex inferred from direct assay (Abel et al., 2009)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
DNA binding inferred from electronic annotation with InterPro:IPR017956 (FlyBase Curators et al., 2004-) zinc ion binding inferred from electronic annotation with InterPro:IPR007087, InterPro:IPR015880 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	gene_with_stop_codon_read_through (Jungreis et al., 2011) nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
row - BEAF-32 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - CG10158 experimental knowledge based (Guruharsha et al., 2011) row - CG1603 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - CG17494 experimental knowledge based (Guruharsha et al., 2011) row - CG3995 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - CG5190 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - CG5565 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - CG6652 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - CG6689 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - Cen experimental knowledge based (Guruharsha et al., 2011) row - HP1c experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Font-Burgada et al., 2008) row - Hakai anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - Kr-h1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - RagC-D anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - RluA-2 experimental knowledge based (Guruharsha et al., 2011) row - Rs1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - Tsp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - Ubqn experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) row - cmet experimental knowledge based (Guruharsha et al., 2011) row - coil anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - ctp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - geminin experimental knowledge based (Guruharsha et al., 2011) row - grau anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - l(3)02640 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - lack anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - ldbr anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - mub anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) row - nxf2 experimental knowledge based (Guruharsha et al., 2011) row - pzg experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) row - woc anti tag coimmunoprecipitation, peptide massfingerprinting, anti bait coimmunoprecipitation, western blot, experimental knowledge based (Mintseris et al., 2009.11.23, Font-Burgada et al., 2008, Guruharsha et al., 2011)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions row allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 62424 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0033998 DroID - A comprehensive database of gene and protein interactions. • FBgn0033998 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36685
Orthologs
OrthoDB Orthologs (30) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6575S0 Dipteran inclusive ortholog search EOG62V8Q7 Insect inclusive ortholog search EOG637Q8T Arthropod inclusive ortholog search EOG67WM3K, EOG6SQVDG Metazoa inclusive ortholog search EOG6GN6PQ
Orthologs in Drosophila Species (EOG6575S0)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\row     Drosophila simulans   Dsim\GD25633 Y   Drosophila sechellia   Dsec\GM20154 Y   Drosophila sechellia   Dsec\GM20155     Drosophila erecta   Dere\GG22370 Y   Drosophila yakuba   Dyak\GE12258 Y   Drosophila ananassae   Dana\GF12625 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA20818 Y   Drosophila persimilis   Dper\GL11474 Y   Drosophila willistoni   Dwil\GK19444 Y   Drosophila virilis   Dvir\GJ20615 Y   Drosophila mojavensis   Dmoj\GI20880 Y   Drosophila grimshawi   Dgri\GH20795 Y
Orthologs in non-Drosophila Dipterans (EOG62V8Q7)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL009674   Aedes aegypti Yellow fever mosquito  Aaeg\AAEL009672   Anopheles gambiae Malaria mosquito  Agam\AGAP001141
Orthologs in non-Dipteran Insects (EOG637Q8T)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB54751   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG001700   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH17322   Atta cephalotes Leafcutter ant  Acep\ACEP12996   Camponotus floridanus Florida carpenter ant  Cflo\CFLO19768   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL16849   Linepithema humile Argentine ant  Lhum\LH18327   Pogonomyrmex barbatus Red harvester ant  Pbar\PB15665   Solenopsis invicta Red fire ant  Sinv\SINV16156   Bombyx mori Silkmoth  Bmor\BGIBMGA003069   Pediculus humanus Human body louse  Phum\PHUM052890   Tribolium castaneum Red flour beetle  Tcas\TC014398
Orthologs in non-Insect Arthropods (EOG67WM3K, EOG6SQVDG)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_308197
Orthologs in non-Arthropod Metazoa (EOG6GN6PQ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Danio rerio Zebrafish  Drer\pogza
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD25633 Drosophila sechellia Dsec\GM20154 Drosophila erecta Dere\GG22370 Drosophila yakuba Dyak\GE12258 Drosophila ananassae Dana\GF12625 Drosophila pseudoobscura pseudoobscura Dpse\GA20818 Drosophila persimilis Dper\GL11474 Drosophila willistoni Dwil\GK19444 Drosophila virilis Dvir\GJ20615 Drosophila mojavensis Dmoj\GI20880 Drosophila grimshawi Dgri\GH20795
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	13910 w1118; P{GT1}rowBG02781 25971 y1 v1; P{TRiP.JF01993}attP2 10046 w1118; PBac{PB}rowc00387 Ir51bc00387
Harvard	- PBac{PB}rowc00387
Kyoto	125925 w1118; P{RS5}row5-SZ-3158
VDRC	v28196 w1118; P{GD12377}v28196
Genomic Clones ( 2 )
	BACR30C07 BACR33K06 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 102 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD21608 LD41072 RE01954
Other clones	DPiM_LD21608
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GM04075 GM04377 GM06596 GM08806 GM29278 LD06516 LD09240 LD10095 LD10663 LD10894 LD15066 LD17777 LD24682 LD29923 LD32287 LD34510 LD35478 LD35691 LD35825 LD36143 LD36478 LD37536 LD38469 LD38693 LD40885 LD47991 LP23275 RE36170 RE58758 RE58770 SD04030 SD12821
Other clones	11804 19870 36717 54190 54686 57099 105377 156961 157093 158062 163872 bs46f11 CK01.13B.G12 CK01.76A.F11 CK01.124B.E11 CK01.128B.E9 CK01.170B.C7 Dmel_neb_005629_0825_1265 Dmel_neb_009722_0907_0621 Dmel_neb_010249_0640_2657 Dmel_neb_011339_0836_3568 EC053698 EC056238 EK059522 EK094420 EK104412 EK112164 EK132746 EK147443 EK169733 EK170002 EK179141 EK179925 EK244061 EK259829 EK259917 EK261035 EK268450 EK290417 FGH126D12 FGM213E08 GH12685 RP004055292 RP004079162 RP004114042 RP004121845 RP004141378 RP004174657 RP004177090 RP004202712 RP004209208 RP004254993 RP004255789 RP004255899 RP004262237 RP004378574 RP004422237 RP004424543 RP004425016 RP004464907 RP004469380 RP004488633 RP004496903 RP004529268 RP004533058 RP004533190
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0033998 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36685
Antibody Information
	polyclonal (Font-Burgada et al., 2008)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: row CG8092 (Font-Burgada et al., 2008)
Source for database merge of	Source for merge of: CG8092 anon-WO0118547.194 (FlyBase, 1996-)
Additional comments	Source for merge of CG8092 anon-WO0118547.194 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
	RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells. (Boutros et al., 2004) Area matching Drosophila EST AA951648. This EST forms a 1340bp contig with ESTs AA539581, AA802940 and AA263326. (Davies, 2001.3.15)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_137175 NM_166081 NM_001274063 RefSeq (Proteins) • NP_611019 NP_725441 NP_001260992 DDBJ / EMBL / GenBank • AA735603 AA951648 AAF58164 AAK93351 AAL28849 AAM68525 AGB93524 AI514534 AW942596 AW943548 AX094070 AY051927 AY061301 BH615032 BI162710 BI162711 Entrez Gene - A searchable database of RefSeq genes. • 36685 UniProtKB/TrEMBL • Q5U156 Q95RL2 Q960P7
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, C2H2 (IPR007087) AT hook, DNA-binding motif (IPR017956) Zinc finger, C2H2-like (IPR015880) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD21608 LD41072
Linkouts
	BioGRID - A database of protein and genetic interactions • 62424 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0033998 DroID - A comprehensive database of gene and protein interactions. • FBgn0033998 DRSC - Results from RNAi screens. • FBgn0033998 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0033998 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8092-RB;CG8092-RB;CG8092-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0033998 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36685 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36685 modMine - Data generated by the modENCODE project. • FBgn0033998
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	anon-WO0118547.194   CG8092 (Jungreis et al., 2011, Waldholm et al., 2011, Buszczak et al., 2007, Stark et al., 2007, Perkins et al., 1.15.2009, Font-Burgada et al., 2008, Abel et al., 2009, Rehwinkel et al., 2005, Japanese National Institute of Genetics, 2012.5.21) row (Font-Burgada et al., 2008, Antao et al., 2012) Row (Abel et al., 2009)
Name Synonym	CG8092   Relative-of-WOC (Font-Burgada et al., 2008) relative of woc
Secondary FlyBase IDs
	FBgn0062179
References ( 33 )
Generate a list of	All references relating to this gene ( 33 )
List References by type	Research paper  ( 8 ) Supplementary material  ( 8 ) Personal communication to FlyBase  ( 8 ) FlyBase analysis  ( 3 ) Stock list  ( 1 ) Patent  ( 1 ) DNA/RNA sequence record  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 2 )
	Antao et al., 2012, Mol. Cell. Biol. 32(12): 2170--2182 Protein Landscape at Drosophila melanogaster Telomere-Associated Sequence Repeats. [FBrf0218429] Waldholm et al., 2011, BMC Mol. Biol. 12: 46 SWI/SNF regulates the alternative processing of a specific subset of pre-mRNAs in Drosophila melanogaster. [FBrf0216757] Show all research papers ...