FlyBase Gene Report: Dmel\bdg

General Information

Symbol

Dmel\bdg

Species

D. melanogaster

Name

bedraggled

Annotation Symbol

CG8291

Feature Type

protein_coding_gene

FlyBase ID

FBgn0034049

Gene Model Status

Current

Stock Availability

8 publicly available

Gene Summary

bedraggled (bdg) encodes a putative transporter involved in the fate commitment of the R3/R4 pair of photoreceptor cells. [Date last reviewed: 2019-09-12] (FlyBase Gene Snapshot)

All Summaries

Gene Snapshot
Alliance
Auto summary
Gene Group
UniProtKB
Interactive Fly

Key Links

Genomic Location

Cytogenetic map

52D2-52D2

Sequence location

2R:15,923,040..15,931,935 [-]

Recombination map

2-76

RefSeq locus

NT_033778 REGION:15923040..15931935

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

GO Summary Ribbons

enzyme

regulator

receptor

receptor binding

transporter

structural molecule

cytoskeletal binding

DNA binding

RNA binding

transcription factor

small molecule binding

metal ion binding

lipid binding

carbohydrate binding

other molecular_function

molecular function

cell cycle/proliferation

cell organization/biogenesis

transport/localization

development

reproduction

immune system

nervous system process

behavior

response to stimulus

signaling

gene expression

protein metabolism

DNA metabolism

small molecule metabolism

other biological_process

biological process

extracellular region

cytosol

cytoskeleton

mitochondrion

nucleus

chromosome

membrane

cell periphery

cell junction

cell projection

endomembrane system

synapse

macromolecular complex

other cellular_component

cellular component

Gene Ontology (GO) Annotations (10 terms)

Molecular Function (4 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (4 terms)

CV Term

Evidence

References

enables amino acid:sodium symporter activity

inferred from biological aspect of ancestor with PANTHER:PTN000907238

(GO Reference Genome Project, 2011-)

enables L-amino acid transmembrane transporter activity

inferred from biological aspect of ancestor with PANTHER:PTN002267127

(GO Reference Genome Project, 2011-)

enables neurotransmitter transmembrane transporter activity

inferred from sequence or structural similarity with FLYBASE:DAT; FB:FBgn0034136

(Romero-Calderon et al., 2007)

enables neurotransmitter:sodium symporter activity

inferred from sequence model

(Thimgan et al., 2006)

Biological Process (4 terms)

Terms Based on Experimental Evidence (1 term)

CV Term

Evidence

References

involved_in R3/R4 cell fate commitment

inferred from mutant phenotype

(Rawls et al., 2007)

inferred from genetic interaction with FLYBASE:dsh; FB:FBgn0000499

(Rawls et al., 2007)

inferred from genetic interaction with FLYBASE:Vang; FB:FBgn0015838

(Rawls et al., 2007)

inferred from genetic interaction with FLYBASE:stan; FB:FBgn0024836

(Rawls et al., 2007)

inferred from genetic interaction with FLYBASE:dgo; FB:FBgn0086898

(Rawls et al., 2007)

Terms Based on Predictions or Assertions (3 terms)

CV Term

Evidence

References

involved_in glycine import across plasma membrane

inferred from biological aspect of ancestor with PANTHER:PTN000907238

(GO Reference Genome Project, 2011-)

involved_in neurotransmitter transport

inferred from sequence or structural similarity with FLYBASE:DAT; FB:FBgn0034136

(Romero-Calderon et al., 2007)

inferred from sequence model

(Thimgan et al., 2006)

involved_in sodium ion transmembrane transport

inferred from biological aspect of ancestor with PANTHER:PTN000177662

(GO Reference Genome Project, 2011-)

Cellular Component (2 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

located_in membrane

inferred from electronic annotation with InterPro:IPR000175

(InterPro Project Members, 2004-)

inferred from sequence model

(Thimgan et al., 2006)

is_active_in plasma membrane

inferred from biological aspect of ancestor with PANTHER:PTN000177662

(GO Reference Genome Project, 2011-)

Gene Group (FlyBase)

SLC6 FAMILY OF SODIUM/CHLORIDE-DEPENDENT NEUROTRANSMITTER TRANSPORTERS

Protein Family (UniProt)

Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (Q0E961)

Protein Signatures (InterPro)

Summaries

Gene Model and Products

Expression Data

Gene ToolKit

The gene 'ToolKit' contains a set of key genetic reagents that can be used to study a gene. A single reagent for each category is chosen based on frequency of usage, and stock availability. Click "See all" to view all the reagents for the category.

Category	Common alleles (# stocks)
Classical and Insertion Alleles
Loss of function allele
Amorphic allele
Fluorescently-tagged allele
Transgenic Constructs
UAS RNAi
UAS wild-type cDNA
Untagged genomic rescue
Fluorescently-tagged genomic rescue
Aberrations
Deficiency
Duplication

Alleles, Insertions, Transgenic Constructs, and Aberrations

Variants

Phenotypes

Orthologs

Paralogs

Human Disease Associations

Functional Complementation Data

Interactions

Pathways

Class of Gene

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

2-76

Cytogenetic map

52D2-52D2

Sequence location

2R:15,923,040..15,931,935 [-]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

52D2-52D2

Limits computationally determined from genome sequence between P{lacW}l(2)k02205^k02205&P{PZ}sli⁰⁵²⁴⁸ and P{lacW}ATPCL^k09217

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

2-76

(FlyBase, 2016)

2-80.0

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Other Comments

Relationship to Other Genes

Nomenclature History

Synonyms and Secondary IDs (3)

Datasets (0)

External Crossreferences and Linkouts ( 44 )

References (37)

The following external sites may use different assemblies or annotations than FlyBase.

GO Summary Ribbons

Expression Summary Ribbons

3.73

Gene ToolKit

Disease Model Summary Ribbon

Report Sections