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Gene Dmel\Atg9

General Information
Symbol	Dmel\Atg9	Species	D. melanogaster
Name	Autophagy-specific gene 9	Annotation symbol	CG3615
Feature type	protein_coding_gene	FlyBase ID	FBgn0034110
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	53B1-53B2	Sequence location	2R:12,181,903..12,184,737 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Autophagy-specific gene 9 is referred to in FlyBase by the symbol Dmel\Atg9 (CG3615, FBgn0034110). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Autophagy-related protein 9. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during late larval stages. Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval Malpighian tubules. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, larval/adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1626033_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Atg9. Gene sequence location is 2R:12181903..12184737.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2012_01	Sequence features BKN20512 HFA06848
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 53B1-53B2   Limits computationally determined from genome sequence between P{lacW}Lis-1k11702&P{EP}CG8443EP969 and P{lacW}l(2)k07824k07824&P{lacW}vegk03402
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Atg9 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	DGC clone SD01812 appears problematic: incomplete CDS
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Atg9-RA FBtr0087141  NM_137270   2835   845
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Atg9-PA   FBpp0086285   95.4   845   6.66     NP_611114   AAF58018
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Autophagy-related protein 9 (IPR007241)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA440647   AA940884   AE013599 AAF58018   AI064217   AI107355   AI109835   AI114294   AI135843   AI260403   AI293166   AI293459   AI297508   AI513266   AI517693   AI530990   AI531165   AI531468   AI531472   AI532266   AI532289   AI532474   AW944205   AY050233 AAK84932   BG639563   BI163403   BI165606   BI171805   BI172069   BI232353   BI357195   BI364476   BI367036   BI370166   BI632864   BI638823   BI639884   BI640410   BQ102997   BT006028 AAO85562   CA805038   CA805080   CK445272   CK659752   CK661290   CK662091   CO153328   CO272576   CO301695   CO313866   CO343462   DQ138824 ABA86430   EC054632   EC060357   EC081193   EC089637   EC246171   EC258480   EC267269   GH291319   GH748927   GH749135   GH754707   GH754855   GH757240   GH757377   GH759259   GH759630   GH774589   GH775839   GH775868   GH776405   GH780754   GH782849   GH783714   GH785613   GH787169   GH787769   GH790326   GH790827   GH792429   GH792590   GH792707   GH793067   GH794189   GH795259   GH795449   GH796574   GH796811   GH797134   GH797975   GH802491   GH802947   GH804502   GH805620   GH806346   GH810452   GH811557   GH811824   GH813121   GH818589   GH818795   GH819851   GH819916   GH821098   GH822644   GH822706   GH823071   GH823573   GH824470   GH825711   GH826786   GH827918   GH830015   GH830116   GH831142   GH831179   GH834491   GH835898   GH836368   GH839182   GH840939   GH842577   GH843284   GH843424   GH843553   GH850972   GH851769   GH853599   GH853842   GH854348   GH855439   GH855441   GH858514   GH858894   GH860177   GH860617   GH862228   GH863790   GH864040   GH864601   GH865097   GH865864   GH870171   GH871158   GH871826   GH871986   GH874034   GH874217   GH874831   GH875659   GH877350   GH877689   GH878074   GH880542   GH881053   GH881522   GH882618   GH883986   GH885639   GH887763   GH888304   GH888566   GH890151   GH890598   GH891179   GH893059   GH893683   GH894139   GH894178   GH894449   GH898120   GH899830   GH899872   GH904227   GH905051   GH905372   GH905911   GH906675   GH907347   GH907985   GH908403   GH911874   GH914757   GH915343   GH919030   GH920694   GH920738   GH921230   GH922032   GH922096   GH922241   GH922973   GH923230   GH925099   GH925142   GH925275   GH925726   GH927423   GH928278   GH929206   GH931224   GH931485   GH935551   GH935707   GH937031   GH937170   GH938344
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q2XY38 Q961S5 Q7JQL5
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
northern blot Stage Tissue/Position (including subcellular localization) Reference pupal stage   salivary gland   (Lee et al., 2003)
Additional Descriptive Data
	The expression of this gene along with several others is induced in salivary glands in pupae at the time of head eversion. This stage is characterized by an increase in the ecdysone titer as well as large amounts of cell death in this tissue. (Lee et al., 2003)
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0034110    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0034110 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during late larval stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0034110 expression level Developmental Stage   Expression Level embryo 00-02hr    1805 embryo 02-04hr    2758 embryo 04-06hr    3295 embryo 06-08hr    2379 embryo 08-10hr    2324 embryo 10-12hr    2457 embryo 12-14hr    1766 embryo 14-16hr    1719 embryo 16-18hr    1813 embryo 18-20hr    3073 embryo 20-22hr    2192 embryo 22-24hr    2340 larva L1    1034 larva L2    737 larva L3 12hr old    1320 larva L3 puffstage 1-2    4870 larva L3 puffstage 3-6    5865 larva L3 puffstage 7-9    4585 white prepupae new    2773 white prepupae 12hr    2945 white prepupae 24hr    1419 pupae 2d postWPP    892 pupae 3d postWPP    736 pupae 4d postWPP    1818 adult male 01day    2079 adult male 05day    1811 adult male 30day    1605 adult female 01day    1905 adult female 05day    1583 adult female 30day    1605 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1805) embryo 02-04hr  (2758) embryo 04-06hr  (3295) embryo 06-08hr  (2379) embryo 08-10hr  (2324) embryo 10-12hr  (2457) embryo 12-14hr  (1766) embryo 14-16hr  (1719) embryo 16-18hr  (1813) embryo 18-20hr  (3073) embryo 20-22hr  (2192) embryo 22-24hr  (2340) larva L1  (1034) larva L2  (737) larva L3 12hr old  (1320) larva L3 puffstage 1-2  (4870) larva L3 puffstage 3-6  (5865) larva L3 puffstage 7-9  (4585) white prepupae new  (2773) white prepupae 12hr  (2945) white prepupae 24hr  (1419) pupae 2d postWPP  (892) pupae 3d postWPP  (736) pupae 4d postWPP  (1818) adult male 01day  (2079) adult male 05day  (1811) adult male 30day  (1605) adult female 01day  (1905) adult female 05day  (1583) adult female 30day  (1605) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1805) embryo 02-04hr  (2758) embryo 04-06hr  (3295) embryo 06-08hr  (2379) embryo 08-10hr  (2324) embryo 10-12hr  (2457) embryo 12-14hr  (1766) embryo 14-16hr  (1719) embryo 16-18hr  (1813) embryo 18-20hr  (3073) embryo 20-22hr  (2192) embryo 22-24hr  (2340) larva L1    1034 larva L2    737 larva L3 12hr old    1320 larva L3 puffstage 1-2  (4870) larva L3 puffstage 3-6  (5865) larva L3 puffstage 7-9  (4585) white prepupae new  (2773) white prepupae 12hr  (2945) white prepupae 24hr  1419 pupae 2d postWPP    892 pupae 3d postWPP    736 pupae 4d postWPP  (1818) adult male 01day  (2079) adult male 05day  (1811) adult male 30day  (1605) adult female 01day  (1905) adult female 05day  (1583) adult female 30day  (1605) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1805 embryo 02-04hr    2758 embryo 04-06hr    3295 embryo 06-08hr    2379 embryo 08-10hr    2324 embryo 10-12hr    2457 embryo 12-14hr    1766 embryo 14-16hr    1719 embryo 16-18hr    1813 embryo 18-20hr    3073 embryo 20-22hr    2192 embryo 22-24hr    2340 larva L1    1034 larva L2    737 larva L3 12hr old    1320 larva L3 puffstage 1-2    4870 larva L3 puffstage 3-6    5865 larva L3 puffstage 7-9    4585 white prepupae new    2773 white prepupae 12hr    2945 white prepupae 24hr    1419 pupae 2d postWPP    892 pupae 3d postWPP    736 pupae 4d postWPP    1818 adult male 01day    2079 adult male 05day    1811 adult male 30day    1605 adult female 01day    1905 adult female 05day    1583 adult female 30day    1605 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1805 embryo 02-04hr    2758 embryo 04-06hr    3295 embryo 06-08hr    2379 embryo 08-10hr    2324 embryo 10-12hr    2457 embryo 12-14hr    1766 embryo 14-16hr    1719 embryo 16-18hr    1813 embryo 18-20hr    3073 embryo 20-22hr    2192 embryo 22-24hr    2340 larva L1    1034 larva L2    737 larva L3 12hr old    1320 larva L3 puffstage 1-2    4870 larva L3 puffstage 3-6    5865 larva L3 puffstage 7-9    4585 white prepupae new    2773 white prepupae 12hr    2945 white prepupae 24hr    1419 pupae 2d postWPP    892 pupae 3d postWPP    736 pupae 4d postWPP    1818 adult male 01day    2079 adult male 05day    1811 adult male 30day    1605 adult female 01day    1905 adult female 05day    1583 adult female 30day    1605 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0034110 expression level Developmental Stage   Expression Level embryo 00-02hr    1805 embryo 02-04hr    2758 embryo 04-06hr    3295 embryo 06-08hr    2379 embryo 08-10hr    2324 embryo 10-12hr    2457 embryo 12-14hr    1766 embryo 14-16hr    1719 embryo 16-18hr    1813 embryo 18-20hr    3073 embryo 20-22hr    2192 embryo 22-24hr    2340 larva L1    1034 larva L2    737 larva L3 12hr old    1320 larva L3 puffstage 1-2    4870 larva L3 puffstage 3-6    5865 larva L3 puffstage 7-9    4585 white prepupae new    2773 white prepupae 12hr    2945 white prepupae 24hr    1419 pupae 2d postWPP    892 pupae 3d postWPP    736 pupae 4d postWPP    1818 adult male 01day    2079 adult male 05day    1811 adult male 30day    1605 adult female 01day    1905 adult female 05day    1583 adult female 30day    1605 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1805) embryo 02-04hr  (2758) embryo 04-06hr  (3295) embryo 06-08hr  (2379) embryo 08-10hr  (2324) embryo 10-12hr  (2457) embryo 12-14hr  (1766) embryo 14-16hr  (1719) embryo 16-18hr  (1813) embryo 18-20hr  (3073) embryo 20-22hr  (2192) embryo 22-24hr  (2340) larva L1  (1034) larva L2  (737) larva L3 12hr old  (1320) larva L3 puffstage 1-2  (4870) larva L3 puffstage 3-6  (5865) larva L3 puffstage 7-9  (4585) white prepupae new  (2773) white prepupae 12hr  (2945) white prepupae 24hr  (1419) pupae 2d postWPP  (892) pupae 3d postWPP  (736) pupae 4d postWPP  (1818) adult male 01day  (2079) adult male 05day  (1811) adult male 30day  (1605) adult female 01day  (1905) adult female 05day  (1583) adult female 30day  (1605) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  1805 embryo 02-04hr  (2758) embryo 04-06hr  (3295) embryo 06-08hr  2379 embryo 08-10hr  2324 embryo 10-12hr  2457 embryo 12-14hr  1766 embryo 14-16hr  1719 embryo 16-18hr  1813 embryo 18-20hr  (3073) embryo 20-22hr  2192 embryo 22-24hr  2340 larva L1    1034 larva L2    737 larva L3 12hr old    1320 larva L3 puffstage 1-2  (4870) larva L3 puffstage 3-6  (5865) larva L3 puffstage 7-9  (4585) white prepupae new  (2773) white prepupae 12hr  (2945) white prepupae 24hr  1419 pupae 2d postWPP    892 pupae 3d postWPP    736 pupae 4d postWPP  1818 adult male 01day  2079 adult male 05day  1811 adult male 30day  1605 adult female 01day  1905 adult female 05day  1583 adult female 30day  1605 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1805 embryo 02-04hr    2758 embryo 04-06hr    3295 embryo 06-08hr    2379 embryo 08-10hr    2324 embryo 10-12hr    2457 embryo 12-14hr    1766 embryo 14-16hr    1719 embryo 16-18hr    1813 embryo 18-20hr    3073 embryo 20-22hr    2192 embryo 22-24hr    2340 larva L1    1034 larva L2    737 larva L3 12hr old    1320 larva L3 puffstage 1-2    4870 larva L3 puffstage 3-6    5865 larva L3 puffstage 7-9    4585 white prepupae new    2773 white prepupae 12hr    2945 white prepupae 24hr    1419 pupae 2d postWPP    892 pupae 3d postWPP    736 pupae 4d postWPP    1818 adult male 01day    2079 adult male 05day    1811 adult male 30day    1605 adult female 01day    1905 adult female 05day    1583 adult female 30day    1605 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1805 embryo 02-04hr    2758 embryo 04-06hr    3295 embryo 06-08hr    2379 embryo 08-10hr    2324 embryo 10-12hr    2457 embryo 12-14hr    1766 embryo 14-16hr    1719 embryo 16-18hr    1813 embryo 18-20hr    3073 embryo 20-22hr    2192 embryo 22-24hr    2340 larva L1    1034 larva L2    737 larva L3 12hr old    1320 larva L3 puffstage 1-2    4870 larva L3 puffstage 3-6    5865 larva L3 puffstage 7-9    4585 white prepupae new    2773 white prepupae 12hr    2945 white prepupae 24hr    1419 pupae 2d postWPP    892 pupae 3d postWPP    736 pupae 4d postWPP    1818 adult male 01day    2079 adult male 05day    1811 adult male 30day    1605 adult female 01day    1905 adult female 05day    1583 adult female 30day    1605 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0034110    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0034110 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval Malpighian tubules. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, larval/adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0034110 expression level Tissue   Expression Level Larval Central Nervous System    73.175 Larval Midgut    377.9 Larval Hindgut    256.8 Larval Malpighian Tubules    504.6 Larval Fat Body    164.1 Larval Salivary Gland    94.6 Larval Trachea    139 Larval Carcass    494.625 Adult Head    122.1 Adult Eye    117.925 Adult Brain    83.6 Adult Thoracic-Abdominal Ganglion    94.1 Adult Crop    177.5 Adult Midgut    202.1 Adult Hindgut    192.1 Adult Malpighian Tubules    204.1 Adult Fat Body    259.5 Adult Salivary Gland    176 Adult Heart    174.05 Adult VirginFemale Spermatheca    300.6 Adult InseminatedFemale Spermatheca    210.8 Adult Ovary    107.8 Adult Testis    23.1 Adult Male Accessory Gland    172.8 Adult Carcass    210.8 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    73.175 Larval Midgut    377.9 Larval Hindgut    256.8 Larval Malpighian Tubules  504.6 Larval Fat Body    164.1 Larval Salivary Gland    94.6 Larval Trachea    139 Larval Carcass    494.625 Adult Head    122.1 Adult Eye    117.925 Adult Brain    83.6 Adult Thoracic-Abdominal Ganglion    94.1 Adult Crop    177.5 Adult Midgut    202.1 Adult Hindgut    192.1 Adult Malpighian Tubules    204.1 Adult Fat Body    259.5 Adult Salivary Gland    176 Adult Heart    174.05 Adult VirginFemale Spermatheca    300.6 Adult InseminatedFemale Spermatheca    210.8 Adult Ovary    107.8 Adult Testis    23.1 Adult Male Accessory Gland    172.8 Adult Carcass    210.8 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    73.175 Larval Midgut    377.9 Larval Hindgut    256.8 Larval Malpighian Tubules    504.6 Larval Fat Body    164.1 Larval Salivary Gland    94.6 Larval Trachea    139 Larval Carcass    494.625 Adult Head    122.1 Adult Eye    117.925 Adult Brain    83.6 Adult Thoracic-Abdominal Ganglion    94.1 Adult Crop    177.5 Adult Midgut    202.1 Adult Hindgut    192.1 Adult Malpighian Tubules    204.1 Adult Fat Body    259.5 Adult Salivary Gland    176 Adult Heart    174.05 Adult VirginFemale Spermatheca    300.6 Adult InseminatedFemale Spermatheca    210.8 Adult Ovary    107.8 Adult Testis    23.1 Adult Male Accessory Gland    172.8 Adult Carcass    210.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    73.175 Larval Midgut    377.9 Larval Hindgut    256.8 Larval Malpighian Tubules    504.6 Larval Fat Body    164.1 Larval Salivary Gland    94.6 Larval Trachea    139 Larval Carcass    494.625 Adult Head    122.1 Adult Eye    117.925 Adult Brain    83.6 Adult Thoracic-Abdominal Ganglion    94.1 Adult Crop    177.5 Adult Midgut    202.1 Adult Hindgut    192.1 Adult Malpighian Tubules    204.1 Adult Fat Body    259.5 Adult Salivary Gland    176 Adult Heart    174.05 Adult VirginFemale Spermatheca    300.6 Adult InseminatedFemale Spermatheca    210.8 Adult Ovary    107.8 Adult Testis    23.1 Adult Male Accessory Gland    172.8 Adult Carcass    210.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0034110 expression level Tissue   Expression Level Larval Central Nervous System    73.175 Larval Midgut    377.9 Larval Hindgut    256.8 Larval Malpighian Tubules    504.6 Larval Fat Body    164.1 Larval Salivary Gland    94.6 Larval Trachea    139 Larval Carcass    494.625 Adult Head    122.1 Adult Eye    117.925 Adult Brain    83.6 Adult Thoracic-Abdominal Ganglion    94.1 Adult Crop    177.5 Adult Midgut    202.1 Adult Hindgut    192.1 Adult Malpighian Tubules    204.1 Adult Fat Body    259.5 Adult Salivary Gland    176 Adult Heart    174.05 Adult VirginFemale Spermatheca    300.6 Adult InseminatedFemale Spermatheca    210.8 Adult Ovary    107.8 Adult Testis    23.1 Adult Male Accessory Gland    172.8 Adult Carcass    210.8 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    73.175 Larval Midgut    377.9 Larval Hindgut    256.8 Larval Malpighian Tubules  504.6 Larval Fat Body    164.1 Larval Salivary Gland    94.6 Larval Trachea    139 Larval Carcass    494.625 Adult Head    122.1 Adult Eye    117.925 Adult Brain    83.6 Adult Thoracic-Abdominal Ganglion    94.1 Adult Crop    177.5 Adult Midgut    202.1 Adult Hindgut    192.1 Adult Malpighian Tubules    204.1 Adult Fat Body    259.5 Adult Salivary Gland    176 Adult Heart    174.05 Adult VirginFemale Spermatheca    300.6 Adult InseminatedFemale Spermatheca    210.8 Adult Ovary    107.8 Adult Testis    23.1 Adult Male Accessory Gland    172.8 Adult Carcass    210.8 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    73.175 Larval Midgut    377.9 Larval Hindgut    256.8 Larval Malpighian Tubules    504.6 Larval Fat Body    164.1 Larval Salivary Gland    94.6 Larval Trachea    139 Larval Carcass    494.625 Adult Head    122.1 Adult Eye    117.925 Adult Brain    83.6 Adult Thoracic-Abdominal Ganglion    94.1 Adult Crop    177.5 Adult Midgut    202.1 Adult Hindgut    192.1 Adult Malpighian Tubules    204.1 Adult Fat Body    259.5 Adult Salivary Gland    176 Adult Heart    174.05 Adult VirginFemale Spermatheca    300.6 Adult InseminatedFemale Spermatheca    210.8 Adult Ovary    107.8 Adult Testis    23.1 Adult Male Accessory Gland    172.8 Adult Carcass    210.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    73.175 Larval Midgut    377.9 Larval Hindgut    256.8 Larval Malpighian Tubules    504.6 Larval Fat Body    164.1 Larval Salivary Gland    94.6 Larval Trachea    139 Larval Carcass    494.625 Adult Head    122.1 Adult Eye    117.925 Adult Brain    83.6 Adult Thoracic-Abdominal Ganglion    94.1 Adult Crop    177.5 Adult Midgut    202.1 Adult Hindgut    192.1 Adult Malpighian Tubules    204.1 Adult Fat Body    259.5 Adult Salivary Gland    176 Adult Heart    174.05 Adult VirginFemale Spermatheca    300.6 Adult InseminatedFemale Spermatheca    210.8 Adult Ovary    107.8 Adult Testis    23.1 Adult Male Accessory Gland    172.8 Adult Carcass    210.8 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    122.1   NA  Eye    117.925   NA  Brain    83.6   73.175  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    94.1   NA  Crop    177.5   377.9  Midgut    202.1   256.8  Hindgut    192.1   504.6  Malpighian Tubules    204.1   164.1  Fat Body    259.5   94.6  Salivary Gland    176   NA  Heart    174.05   139  Trachea    NA   NA  VirginFemale Spermatheca    300.6   NA  InseminatedFemale Spermatheca    210.8   NA  Ovary    107.8   NA  Testis    23.1   NA  Male Accessory Gland    172.8   494.625  Carcass    210.8 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_25
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0034110 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3615-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for Atg9 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 Atg9GD2029 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Atg9 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Atg9 Class Mutagen Stocks Known lesion Atg9GD2029 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Atg9HMS01246 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Atg9JF02891 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel6063 (Ryder, 2004.4.26) Df(2R)Exel7142 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD2029} NA P{TRiP.HMS01246} NA P{TRiP.JF02891} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Atg9 allele Gene References
External Data
Linkouts	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0034110 DroID - A comprehensive database of gene and protein interactions. • FBgn0034110 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36821
Orthologs
Genome-wide drosophilid orthologs	Dana\Atg9 Dere\Atg9 Dgri\GH19901 Dmoj\GI19856 Dper\GL10727 Dpse\Atg9 Dsec\Atg9 Dsim\Atg9 Dvir\GJ18883 Dwil\GK20903 Dyak\Atg9
Curated drosophilid orthologs	Dana\Atg9 (Oriol, 2005.9.12) Dere\Atg9 (Oriol, 2005.9.12) Dere\CG3615 (Comeron and Guthrie, 2005.7.21) Dpse\Atg9 (Oriol, 2005.9.12) Dsec\Atg9 (Oriol, 2005.9.12) Dsim\Atg9 (Oriol, 2005.9.12) Dsim\CG3615 (Comeron and Guthrie, 2005.7.21) Dyak\Atg9 (Oriol, 2005.9.12) Dyak\CG3615 (Comeron and Guthrie, 2005.7.21)
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL009105-PA Aedes aegypti (mosquito) AGAP001762-PA Anopheles gambiae (mosquito) XP_395581.3 Apis mellifera (honey bee) XP_001944038.1 Acyrthosiphon pisum (pea aphid) At2g31260.1 Arabidopsis thaliana (wall cress) 18386 Batrachochytrium dendrobatidis (chytrid fungus) 154487 Branchiostoma floridae (lancelet) XP_001895401.1 Brugia malayi (roundworm nematode) BGIBMGA012307-PA Bombyx mori (silk worm) ENSBTAP00000027461 Bos taurus (bovine) CAL0003426 Candida albicans (a form of yeast) CN01183 Caenorhabditis brenneri (small nematode) CBP31940 Caenorhabditis briggsae (nematode) CE20100 Caenorhabditis elegans (worm) ENSCAFP00000022223 Canis familiaris (dog) CAGL0I03652g Candida glabrata (haploid yeast) ENSCINP00000010090 Ciona intestinalis (sea squirt) JA11639 Caenorhabditis japonica (nematode) cn04078 Cryptococcus neoformans (yeast-like fungus) CPIJ012964 Culex pipens (mosquito) ENSCPOP00000019291 Cavia porcellus (guinea pig) RP01198 Caenorhabditis remanei (nematode) ENSCSAVP00000003171 Ciona savignyi (sedentary tunicate) 136790 Capitella spl (polychaete worm) DDB0191423 Dictyostelium discoideum (amoeba) DEHA2B14168g Debaryomyces Hansenii (yeast) 41567 Daphnia pulex (daphnia) ENSDARP00000065410 Danio rerio (zebra fish) ENSDARP00000072100 Danio rerio (zebra fish) ENSECAP00000006179 Equus caballus (horse) ENSGACP00000023758 Gymnopilus aculeatus (mushroom) ENSGALP00000019015 Gallus gallus (chicken) 95975 Hypsipyla robusta (cedar shoot borer) ENSP00000355173 Homo sapiens (human) KLLA0C16357g Kluyveromyces lactis (yeast) 137839 Lottia gigantea (owl limpet) ENSMODP00000019110 Monodelphis domestica (gray opossum) ENSMMUP00000025769 Macaca mulatta (rhesus monkey) ENSMUSP00000047449 Mus musculus (house mouse) 99635 Nematostella vectensis (starlet anemone) XP_001603039.1 Nasonia vitripennis (wasp) ENSOANP00000010980 Ornithorynchus anatinus (platypus) ENSORLP00000021956 Oryzias latipes (japanese killifish) LOC_Os10g07994.1 Oryza sativa (asian rice) 17298 Ostreococcus tauri (green alga) PHUM002904-PA Pediculus humanus (human body louse) 146462 Physcomitrella patens (moss) ENSPPYP00000014748 Pongo pygmaeus (orangutan) 77915 Phytophthora ramorum (sudden oak death pathogen) 139418 Phytophthora sojae (root rot pathogen) 559679 Populus trichocarpa (black cottonwood) ENSPTRP00000058775 Pan troglodytes (chimpanzee) ENSRNOP00000025710 Rattus norvegicus (norway rat) 4997206 Sorghum bicolor (sorghum) YDL149W Saccharomyces cerevisiae (budding yeast) Smp_149960 Schistosoma mansoni (trematode parasite) SPBC15D4.07c Schizosaccharomyces pombe (fission yeast) 22278 Trichoplax adhaerens (metazoa) XP_968896.1 Tribolium castaneum (red flour beetle) ENSTNIP00000011330 Tetraodon nigroviridis (green spotted pufferfish) 21712 Thalassiosira pseudonana (marine diatom) ENSTRUP00000005297 Takifugu rubripes (pufferfish Takifugu) 95068.m00248 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000026208 Xenopus tropicalis (frog) YALI0F08349g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB16439 NV18238 NV18220 LH22982 FBgn0083332 FBgn0222896 FBgn0206029 FBgn0083470 FBgn0083480 JGI_V11_41567 FBgn0243562 FBgn0148337 FBgn0142593 FBgn0127365 FBgn0083776 FBgn0083875 CPIJ012964 BGIBMGA012307 ACYPI007900 ACYPI000660 GB12127 AGAP001762 AAEL009105 PHUM577780 GLEAN_13228
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	28055 y1 v1; P{TRiP.JF02891}attP2 34901 y1 sc* v1; P{TRiP.HMS01246}attP2
VDRC	v10045 w1118; P{GD2029}v10045
Genomic Clones ( 1 )
	BACR25I17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 202 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE14003 SD01812
Other clones	DPiM_RE14003
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH04164 GH04525 GH09214 GH11092 GH16274 GH28741 LD15495 LD23204 LP04235 LP06612 LP11820 LP14150 LP17726 LP20678 LP22055 RE02785 RE05534 RE13658 RE28407 RE43609 RE49595 RE52708 RE56584 SD02089 SD02513 SD02525 SD02529 SD03702 SD03746 SD04010 SD21214 SD22586 SD23255 SD26754
Other clones	8683 58921 165568 214339.75 522294 CK01.73D.G6 DMG5-chr2R.22.013.pred.a EC054632 EK107659 EK181923 EK234209 EN01742 EP16823 ESG0116b.B21_B08 ESG0116b.B21_G12 GH13742 RP003003982 RP003011998 RP003017656 RP003021670 RP003023804 RP003047322 RP003049741 RP003050098 RP003051433 RP003060456 RP003073984 RP003078448 RP003079688 RP003093464 RP003094465 RP003098362 RP003109220 RP003110032 RP003113235 RP003116166 RP003117007 RP003119342 RP003119791 RP003129049 RP003130968 RP003135755 RP003140607 RP003142195 RP003155056 RP003159500 RP003165146 RP003171710 RP003180602 RP003180842 RP003189189 RP003190442 RP003194697 RP003196420 RP003197749 RP003200725 RP003202305 RP003203500 RP003212342 RP003222925 RP003223275 RP003227614 RP003228674 RP003232479 RP003250810 RP003262295 RP003265495 RP003266718 RP003267992 RP003270218 RP003277038 RP003277110 RP003277564 RP003279074 RP003283225 RP003287761 RP003288759 RP003289502 RP003296737 RP003303952 RP003308537 RP003312078 RP003315264 RP003316115 RP003320810 RP003321850 RP003322496 RP003323755 RP003334289 RP003334994 RP003335765 RP003337073 RP003337490 RP003337763 RP003337784 RP003352669 RP003358111 RP003366626 RP003366915 RP003367192 RP003369692 RP003370983 RP003376585 RP003377330 RP003383777 RP003386151 RP003408381 RP003416018 RP003421036 RP003422983 RP003426108 RP003432281 RP003435625 RP003438044 RP003441290 RP003443903 RP003447911 RP003449658 RP003462038 RP003467608 RP003468845 RP003469054 RP003481453 RP003492286 RP003501539 RP003513696 RP003514085 RP003520702 RP003526758 RP003528616 RP003533385 RP003538909 RP003539371 RP003540485 RP003541067 RP003543333 RP003543880 RP003547054 RP003558083 RP003562472 RP003565081 RP003567122 RP003567304 RP003568178 RP003569769 RP003570127 RP003572627 RP003577275 RP003577450 RP003578227 RP003578408 RP003579139 RP003592112 RP003594497 RP003615610 RP003619334 RP003620873 RP003623545 RP003626058 RP003634682 RP003636367 RP003670657 RP003671566 RP003672208 UUGC0391
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0034110 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36821
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Atg9 CG3615 (Scott et al., 2004)
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_137270 RefSeq (Proteins) • NP_611114 DDBJ / EMBL / GenBank • AAF58018 AAK84932 AAO85562 ABA86430 AI530990 AW944205 AY050233 BI172069 BT006028 DQ138824 Entrez Gene - A searchable database of RefSeq genes. • 36821 UniProtKB/TrEMBL • Q2XY38 Q7JQL5 Q961S5
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Autophagy-related protein 9 (IPR007241)
Linkouts
	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0034110 DroID - A comprehensive database of gene and protein interactions. • FBgn0034110 DRSC - Results from RNAi screens. • FBgn0034110 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0034110 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3615-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0034110 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36821 InParanoid A subset of ortholog calls from InParanoid. • AAEL009105-PA Aedes aegypti (mosquito) AGAP001762-PA Anopheles gambiae (mosquito) XP_395581.3 Apis mellifera (honey bee) XP_001944038.1 Acyrthosiphon pisum (pea aphid) At2g31260.1 Arabidopsis thaliana (wall cress) 18386 Batrachochytrium dendrobatidis (chytrid fungus) 154487 Branchiostoma floridae (lancelet) XP_001895401.1 Brugia malayi (roundworm nematode) BGIBMGA012307-PA Bombyx mori (silk worm) ENSBTAP00000027461 Bos taurus (bovine) CAL0003426 Candida albicans (a form of yeast) CN01183 Caenorhabditis brenneri (small nematode) CBP31940 Caenorhabditis briggsae (nematode) CE20100 Caenorhabditis elegans (worm) ENSCAFP00000022223 Canis familiaris (dog) CAGL0I03652g Candida glabrata (haploid yeast) ENSCINP00000010090 Ciona intestinalis (sea squirt) JA11639 Caenorhabditis japonica (nematode) cn04078 Cryptococcus neoformans (yeast-like fungus) CPIJ012964 Culex pipens (mosquito) ENSCPOP00000019291 Cavia porcellus (guinea pig) RP01198 Caenorhabditis remanei (nematode) ENSCSAVP00000003171 Ciona savignyi (sedentary tunicate) 136790 Capitella spl (polychaete worm) DDB0191423 Dictyostelium discoideum (amoeba) DEHA2B14168g Debaryomyces Hansenii (yeast) 41567 Daphnia pulex (daphnia) ENSDARP00000065410 Danio rerio (zebra fish) ENSDARP00000072100 Danio rerio (zebra fish) ENSECAP00000006179 Equus caballus (horse) ENSGACP00000023758 Gymnopilus aculeatus (mushroom) ENSGALP00000019015 Gallus gallus (chicken) 95975 Hypsipyla robusta (cedar shoot borer) ENSP00000355173 Homo sapiens (human) KLLA0C16357g Kluyveromyces lactis (yeast) 137839 Lottia gigantea (owl limpet) ENSMODP00000019110 Monodelphis domestica (gray opossum) ENSMMUP00000025769 Macaca mulatta (rhesus monkey) ENSMUSP00000047449 Mus musculus (house mouse) 99635 Nematostella vectensis (starlet anemone) XP_001603039.1 Nasonia vitripennis (wasp) ENSOANP00000010980 Ornithorynchus anatinus (platypus) ENSORLP00000021956 Oryzias latipes (japanese killifish) LOC_Os10g07994.1 Oryza sativa (asian rice) 17298 Ostreococcus tauri (green alga) PHUM002904-PA Pediculus humanus (human body louse) 146462 Physcomitrella patens (moss) ENSPPYP00000014748 Pongo pygmaeus (orangutan) 77915 Phytophthora ramorum (sudden oak death pathogen) 139418 Phytophthora sojae (root rot pathogen) 559679 Populus trichocarpa (black cottonwood) ENSPTRP00000058775 Pan troglodytes (chimpanzee) ENSRNOP00000025710 Rattus norvegicus (norway rat) 4997206 Sorghum bicolor (sorghum) YDL149W Saccharomyces cerevisiae (budding yeast) Smp_149960 Schistosoma mansoni (trematode parasite) SPBC15D4.07c Schizosaccharomyces pombe (fission yeast) 22278 Trichoplax adhaerens (metazoa) XP_968896.1 Tribolium castaneum (red flour beetle) ENSTNIP00000011330 Tetraodon nigroviridis (green spotted pufferfish) 21712 Thalassiosira pseudonana (marine diatom) ENSTRUP00000005297 Takifugu rubripes (pufferfish Takifugu) 95068.m00248 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000026208 Xenopus tropicalis (frog) YALI0F08349g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36821 modMine - Data generated by the modENCODE project. • FBgn0034110 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB16439 NV18238 NV18220 LH22982 FBgn0083332 FBgn0222896 FBgn0206029 FBgn0083470 FBgn0083480 JGI_V11_41567 FBgn0243562 FBgn0148337 FBgn0142593 FBgn0127365 FBgn0083776 FBgn0083875 CPIJ012964 BGIBMGA012307 ACYPI007900 ACYPI000660 GB12127 AGAP001762 AAEL009105 PHUM577780 GLEAN_13228
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	Atg9 (Kadandale et al., 2010, Martin et al., 2007, Liu and Lehmann, 2008) atg9 (Shelly et al., 2009) CG3615 (Dostert et al., 2005, Boutros et al., 2002, Lee et al., 2003, Perkins et al., 2009, Ni et al., 2011.7.19)
Name Synonym	Autophagy-specific gene 9 (Scott et al., 2004)
Secondary FlyBase IDs
References ( 26 )
Generate a list of	All references relating to this gene ( 26 )
List References by type	Research paper  ( 8 ) Supplementary material  ( 3 ) Personal communication to FlyBase  ( 4 ) Computer file  ( 1 ) DNA/RNA sequence record  ( 9 )
Recent research papers ( 2 )
	Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812] Kadandale et al., 2010, Proc. Natl. Acad. Sci. U.S.A. 107(23): 10502--10507 Conserved role for autophagy in Rho1-mediated cortical remodeling and blood cell recruitment. [FBrf0210996] Show all research papers ...