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Gene Dmel\CG10936

General Information
Symbol	Dmel\CG10936	Species	D. melanogaster
Name		Annotation symbol	CG10936
Feature type	protein_coding_gene	FlyBase ID	FBgn0034253
Gene Model Status	Current	Stock availability	13 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	54D1-54D2	Sequence location	2R:13,492,456..13,526,639 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG10936 (FBgn0034253). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 15 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: SEA. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 12-18 embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval trachea. Comments on Affy2 ProbeSet: ProbeSet 1639703_s_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG10936. Gene sequence location is 2R:13492456..13526639.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01	Sequence features HFA05670 BKN24371 HFA06018 HFA05669
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 54D1-54D2   Limits computationally determined from genome sequence between P{PZ}l(2)1050510505 and P{lacW}l(2)k07509k07509&P{EP}CG10934EP538
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG10936 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG10936-RA FBtr0086895  NM_137395   5373   1524 CG10936-RB FBtr0086894  NM_166242   5370   1524
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG10936-PA   FBpp0086054   165.9   1524   4.89     NP_611239   AAM68482 CG10936-PB   FBpp0086053   165.9   1524   4.89     NP_725702   AAF57823
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • SEA (IPR000082)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE013599 AAF57823   AE013599 AAM68482   AI946177   AY113445 AAM29450   BI213504   BI231136   BI231805   BI234132   BI369619   BI613221   CL528193   CO187269   CO190255   CO263707   CO293368   CO293525   CO304962   CO305488   CO320310   CO328332   CO343886   CZ468213   CZ482446   CZ482520   CZ484539   CZ484963   CZ486140   CZ490224   EC078946   EC080437   EC197073   EC204764   EC222022   EC224240   EC224281   EC227577   EC229081   EC229648   EC237758   EC241330   EC259937   ES690858
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q7JWM6
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0034253    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0034253 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 12-18 embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0034253 expression level Developmental Stage   Expression Level embryo 00-02hr    142 embryo 02-04hr    93 embryo 04-06hr    33 embryo 06-08hr    89 embryo 08-10hr    157 embryo 10-12hr    368 embryo 12-14hr    912 embryo 14-16hr    3565 embryo 16-18hr    4072 embryo 18-20hr    2946 embryo 20-22hr    1185 embryo 22-24hr    1354 larva L1    849 larva L2    1497 larva L3 12hr old    1238 larva L3 puffstage 1-2    970 larva L3 puffstage 3-6    1151 larva L3 puffstage 7-9    994 white prepupae new    950 white prepupae 12hr    3335 white prepupae 24hr    1515 pupae 2d postWPP    2668 pupae 3d postWPP    2727 pupae 4d postWPP    613 adult male 01day    707 adult male 05day    139 adult male 30day    94 adult female 01day    535 adult female 05day    286 adult female 30day    238 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (142) embryo 02-04hr    93 embryo 04-06hr    33 embryo 06-08hr    89 embryo 08-10hr  (157) embryo 10-12hr  (368) embryo 12-14hr  (912) embryo 14-16hr  (3565) embryo 16-18hr  (4072) embryo 18-20hr  (2946) embryo 20-22hr  (1185) embryo 22-24hr  (1354) larva L1  (849) larva L2  (1497) larva L3 12hr old  (1238) larva L3 puffstage 1-2  (970) larva L3 puffstage 3-6  (1151) larva L3 puffstage 7-9  (994) white prepupae new  (950) white prepupae 12hr  (3335) white prepupae 24hr  (1515) pupae 2d postWPP  (2668) pupae 3d postWPP  (2727) pupae 4d postWPP  (613) adult male 01day  (707) adult male 05day  (139) adult male 30day    94 adult female 01day  (535) adult female 05day  (286) adult female 30day  (238) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    142 embryo 02-04hr    93 embryo 04-06hr    33 embryo 06-08hr    89 embryo 08-10hr    157 embryo 10-12hr    368 embryo 12-14hr    912 embryo 14-16hr  (3565) embryo 16-18hr  (4072) embryo 18-20hr  (2946) embryo 20-22hr    1185 embryo 22-24hr    1354 larva L1    849 larva L2  1497 larva L3 12hr old    1238 larva L3 puffstage 1-2    970 larva L3 puffstage 3-6    1151 larva L3 puffstage 7-9    994 white prepupae new    950 white prepupae 12hr  (3335) white prepupae 24hr  (1515) pupae 2d postWPP  (2668) pupae 3d postWPP  (2727) pupae 4d postWPP    613 adult male 01day    707 adult male 05day    139 adult male 30day    94 adult female 01day    535 adult female 05day    286 adult female 30day    238 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    142 embryo 02-04hr    93 embryo 04-06hr    33 embryo 06-08hr    89 embryo 08-10hr    157 embryo 10-12hr    368 embryo 12-14hr    912 embryo 14-16hr    3565 embryo 16-18hr    4072 embryo 18-20hr    2946 embryo 20-22hr    1185 embryo 22-24hr    1354 larva L1    849 larva L2    1497 larva L3 12hr old    1238 larva L3 puffstage 1-2    970 larva L3 puffstage 3-6    1151 larva L3 puffstage 7-9    994 white prepupae new    950 white prepupae 12hr    3335 white prepupae 24hr    1515 pupae 2d postWPP    2668 pupae 3d postWPP    2727 pupae 4d postWPP    613 adult male 01day    707 adult male 05day    139 adult male 30day    94 adult female 01day    535 adult female 05day    286 adult female 30day    238 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    142 embryo 02-04hr    93 embryo 04-06hr    33 embryo 06-08hr    89 embryo 08-10hr    157 embryo 10-12hr    368 embryo 12-14hr    912 embryo 14-16hr    3565 embryo 16-18hr    4072 embryo 18-20hr    2946 embryo 20-22hr    1185 embryo 22-24hr    1354 larva L1    849 larva L2    1497 larva L3 12hr old    1238 larva L3 puffstage 1-2    970 larva L3 puffstage 3-6    1151 larva L3 puffstage 7-9    994 white prepupae new    950 white prepupae 12hr    3335 white prepupae 24hr    1515 pupae 2d postWPP    2668 pupae 3d postWPP    2727 pupae 4d postWPP    613 adult male 01day    707 adult male 05day    139 adult male 30day    94 adult female 01day    535 adult female 05day    286 adult female 30day    238 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0034253 expression level Developmental Stage   Expression Level embryo 00-02hr    142 embryo 02-04hr    93 embryo 04-06hr    33 embryo 06-08hr    89 embryo 08-10hr    157 embryo 10-12hr    368 embryo 12-14hr    912 embryo 14-16hr    3565 embryo 16-18hr    4072 embryo 18-20hr    2946 embryo 20-22hr    1185 embryo 22-24hr    1354 larva L1    849 larva L2    1497 larva L3 12hr old    1238 larva L3 puffstage 1-2    970 larva L3 puffstage 3-6    1151 larva L3 puffstage 7-9    994 white prepupae new    950 white prepupae 12hr    3335 white prepupae 24hr    1515 pupae 2d postWPP    2668 pupae 3d postWPP    2727 pupae 4d postWPP    613 adult male 01day    707 adult male 05day    139 adult male 30day    94 adult female 01day    535 adult female 05day    286 adult female 30day    238 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  142 embryo 02-04hr    93 embryo 04-06hr    33 embryo 06-08hr    89 embryo 08-10hr  (157) embryo 10-12hr  (368) embryo 12-14hr  (912) embryo 14-16hr  (3565) embryo 16-18hr  (4072) embryo 18-20hr  (2946) embryo 20-22hr  (1185) embryo 22-24hr  (1354) larva L1  (849) larva L2  (1497) larva L3 12hr old  (1238) larva L3 puffstage 1-2  (970) larva L3 puffstage 3-6  (1151) larva L3 puffstage 7-9  (994) white prepupae new  (950) white prepupae 12hr  (3335) white prepupae 24hr  (1515) pupae 2d postWPP  (2668) pupae 3d postWPP  (2727) pupae 4d postWPP  (613) adult male 01day  (707) adult male 05day  139 adult male 30day    94 adult female 01day  (535) adult female 05day  (286) adult female 30day  (238) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    142 embryo 02-04hr    93 embryo 04-06hr    33 embryo 06-08hr    89 embryo 08-10hr    157 embryo 10-12hr    368 embryo 12-14hr    912 embryo 14-16hr  (3565) embryo 16-18hr  (4072) embryo 18-20hr  (2946) embryo 20-22hr    1185 embryo 22-24hr    1354 larva L1    849 larva L2  1497 larva L3 12hr old    1238 larva L3 puffstage 1-2    970 larva L3 puffstage 3-6    1151 larva L3 puffstage 7-9    994 white prepupae new    950 white prepupae 12hr  (3335) white prepupae 24hr  1515 pupae 2d postWPP  (2668) pupae 3d postWPP  (2727) pupae 4d postWPP    613 adult male 01day    707 adult male 05day    139 adult male 30day    94 adult female 01day    535 adult female 05day    286 adult female 30day    238 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    142 embryo 02-04hr    93 embryo 04-06hr    33 embryo 06-08hr    89 embryo 08-10hr    157 embryo 10-12hr    368 embryo 12-14hr    912 embryo 14-16hr    3565 embryo 16-18hr    4072 embryo 18-20hr    2946 embryo 20-22hr    1185 embryo 22-24hr    1354 larva L1    849 larva L2    1497 larva L3 12hr old    1238 larva L3 puffstage 1-2    970 larva L3 puffstage 3-6    1151 larva L3 puffstage 7-9    994 white prepupae new    950 white prepupae 12hr    3335 white prepupae 24hr    1515 pupae 2d postWPP    2668 pupae 3d postWPP    2727 pupae 4d postWPP    613 adult male 01day    707 adult male 05day    139 adult male 30day    94 adult female 01day    535 adult female 05day    286 adult female 30day    238 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    142 embryo 02-04hr    93 embryo 04-06hr    33 embryo 06-08hr    89 embryo 08-10hr    157 embryo 10-12hr    368 embryo 12-14hr    912 embryo 14-16hr    3565 embryo 16-18hr    4072 embryo 18-20hr    2946 embryo 20-22hr    1185 embryo 22-24hr    1354 larva L1    849 larva L2    1497 larva L3 12hr old    1238 larva L3 puffstage 1-2    970 larva L3 puffstage 3-6    1151 larva L3 puffstage 7-9    994 white prepupae new    950 white prepupae 12hr    3335 white prepupae 24hr    1515 pupae 2d postWPP    2668 pupae 3d postWPP    2727 pupae 4d postWPP    613 adult male 01day    707 adult male 05day    139 adult male 30day    94 adult female 01day    535 adult female 05day    286 adult female 30day    238 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0034253    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0034253 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval trachea. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0034253 expression level Tissue   Expression Level Larval Central Nervous System    10.6 Larval Midgut    25.2 Larval Hindgut    91.3 Larval Malpighian Tubules    5.9 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    308.1 Larval Carcass    506.575 Adult Head no informative data Adult Eye    18.125 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    5.2 Adult Crop no informative data Adult Midgut    5.9 Adult Hindgut no informative data Adult Malpighian Tubules    4.1 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    9.55 Adult VirginFemale Spermatheca    25.1 Adult InseminatedFemale Spermatheca no informative data Adult Ovary    21.2 Adult Testis    38.9 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    10.6 Larval Midgut    25.2 Larval Hindgut    91.3 Larval Malpighian Tubules    5.9 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    308.1 Larval Carcass  506.575 Adult Head no informative data Adult Eye    18.125 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    5.2 Adult Crop no informative data Adult Midgut    5.9 Adult Hindgut no informative data Adult Malpighian Tubules    4.1 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    9.55 Adult VirginFemale Spermatheca    25.1 Adult InseminatedFemale Spermatheca no informative data Adult Ovary    21.2 Adult Testis    38.9 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    10.6 Larval Midgut    25.2 Larval Hindgut    91.3 Larval Malpighian Tubules    5.9 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    308.1 Larval Carcass    506.575 Adult Head no informative data Adult Eye    18.125 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    5.2 Adult Crop no informative data Adult Midgut    5.9 Adult Hindgut no informative data Adult Malpighian Tubules    4.1 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    9.55 Adult VirginFemale Spermatheca    25.1 Adult InseminatedFemale Spermatheca no informative data Adult Ovary    21.2 Adult Testis    38.9 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    10.6 Larval Midgut    25.2 Larval Hindgut    91.3 Larval Malpighian Tubules    5.9 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    308.1 Larval Carcass    506.575 Adult Head no informative data Adult Eye    18.125 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    5.2 Adult Crop no informative data Adult Midgut    5.9 Adult Hindgut no informative data Adult Malpighian Tubules    4.1 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    9.55 Adult VirginFemale Spermatheca    25.1 Adult InseminatedFemale Spermatheca no informative data Adult Ovary    21.2 Adult Testis    38.9 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0034253 expression level Tissue   Expression Level Larval Central Nervous System    10.6 Larval Midgut    25.2 Larval Hindgut    91.3 Larval Malpighian Tubules    5.9 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    308.1 Larval Carcass    506.575 Adult Head no informative data Adult Eye    18.125 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    5.2 Adult Crop no informative data Adult Midgut    5.9 Adult Hindgut no informative data Adult Malpighian Tubules    4.1 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    9.55 Adult VirginFemale Spermatheca    25.1 Adult InseminatedFemale Spermatheca no informative data Adult Ovary    21.2 Adult Testis    38.9 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    10.6 Larval Midgut    25.2 Larval Hindgut    91.3 Larval Malpighian Tubules    5.9 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    308.1 Larval Carcass  506.575 Adult Head no informative data Adult Eye    18.125 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    5.2 Adult Crop no informative data Adult Midgut    5.9 Adult Hindgut no informative data Adult Malpighian Tubules    4.1 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    9.55 Adult VirginFemale Spermatheca    25.1 Adult InseminatedFemale Spermatheca no informative data Adult Ovary    21.2 Adult Testis    38.9 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    10.6 Larval Midgut    25.2 Larval Hindgut    91.3 Larval Malpighian Tubules    5.9 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    308.1 Larval Carcass    506.575 Adult Head no informative data Adult Eye    18.125 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    5.2 Adult Crop no informative data Adult Midgut    5.9 Adult Hindgut no informative data Adult Malpighian Tubules    4.1 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    9.55 Adult VirginFemale Spermatheca    25.1 Adult InseminatedFemale Spermatheca no informative data Adult Ovary    21.2 Adult Testis    38.9 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    10.6 Larval Midgut    25.2 Larval Hindgut    91.3 Larval Malpighian Tubules    5.9 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    308.1 Larval Carcass    506.575 Adult Head no informative data Adult Eye    18.125 Adult Brain    6.1 Adult Thoracic-Abdominal Ganglion    5.2 Adult Crop no informative data Adult Midgut    5.9 Adult Hindgut no informative data Adult Malpighian Tubules    4.1 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    9.55 Adult VirginFemale Spermatheca    25.1 Adult InseminatedFemale Spermatheca no informative data Adult Ovary    21.2 Adult Testis    38.9 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea     Larval Carcass     Adult Head no informative data Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop no informative data Adult Midgut     Adult Hindgut no informative data Adult Malpighian Tubules     Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca no informative data Adult Ovary     Adult Testis     Adult Male Accessory Gland no informative data Adult Carcass no informative data FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    no informative data   NA  Eye    18.125   NA  Brain    6.1   10.6  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    5.2   NA  Crop    no informative data   25.2  Midgut    5.9   91.3  Hindgut    no informative data   5.9  Malpighian Tubules    4.1   no informative data  Fat Body    no informative data   no informative data  Salivary Gland    no informative data   NA  Heart    9.55   308.1  Trachea    NA   NA  VirginFemale Spermatheca    25.1   NA  InseminatedFemale Spermatheca    no informative data   NA  Ovary    21.2   NA  Testis    38.9   NA  Male Accessory Gland    no informative data   506.575  Carcass    no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_29
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0034253 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG10936-RB FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG10936 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG10936e04671 CG10936EY09850 CG10936EY12999 viable, with Scer\GAL4pnr-MD237 CG10936GD2055 Sterility Allele fertile CG10936e04671 CG10936EY09850 CG10936EY12999 Phenotype manifest in Allele
Classical Alleles ( 13 )
For All Classical Alleles Show
Allele of CG10936 Class Mutagen Stocks Known lesion CG10936e04671 piggyBac transposase 2 -- CG10936c02794 piggyBac transposase 1 -- CG10936DG16411 P-element activity 1 -- CG10936EY09850 P-element activity 1 Yes CG10936EY12999 P-element activity 1 -- CG10936f00034 piggyBac transposase 1 -- CG10936f02043 piggyBac transposase 1 -- CG10936f03564 piggyBac transposase 1 -- CG10936G8227 P-element activity 1 -- CG10936MB11295 1 -- CG10936MI03056 1 -- CG10936f02448 piggyBac transposase 0 -- CG10936f07491 piggyBac transposase 0 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG10936 Class Mutagen Stocks Known lesion CG10936GD2055 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG10936KK105235 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel7149 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD2055} NA P{KK105235} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}rhiG8227 NA P{EPgy2}CG10936EY12999 NA P{EPgy2}rhiEY09850 NA miscellaneous insertions Mi{MIC}rhiMI03056 NA P{wHy}CG10936DG16411 NA PBac{PB}CG10936c02794 NA PBac{PB}rhic03973 NA PBac{RB}CG10936e04671 NA PBac{WH}CG10936f00034 NA PBac{WH}CG10936f02043 NA PBac{WH}CG10936f02448 NA PBac{WH}CG10936f03564 NA PBac{WH}CG10936f07491 NA PBac{WH}rhif00459 NA PBac{WH}rhif04208 NA insertion of enhancer trap binary system Mi{ET1}CG10936MB11295 No
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG10936 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0034253
Orthologs
Genome-wide drosophilid orthologs	Dana\GF13240 Dere\GG21036 Dgri\GH21810 Dmoj\GI20784 Dper\GL17685 Dpse\GA10653 Dsec\GM19963 Dsim\rhi Dvir\GJ20518 Dwil\GK10665 Dyak\rhi
Curated drosophilid orthologs	Dpse\GA10653
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL012794-PA Aedes aegypti (mosquito) AGAP003746-PA Anopheles gambiae (mosquito) XP_624430.2 Apis mellifera (honey bee) XP_001952621.1 Acyrthosiphon pisum (pea aphid) CPIJ011474 Culex pipens (mosquito) 163537 Lottia gigantea (owl limpet) XP_001607283.1 Nasonia vitripennis (wasp) PHUM008676-PA Pediculus humanus (human body louse) XP_968804.1 Tribolium castaneum (red flour beetle) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV11776 LH21209 ISCW014666 FBgn0083321 FBgn0212678 FBgn0207658 FBgn0064354 FBgn0174849 FBgn0070709 FBgn0155288 FBgn0143519 FBgn0129271 FBgn0113220 FBgn0090272 CPIJ011474 ACYPI009978 GB12213 AGAP003746 AAEL012794 PB25834 PHUM334420 GLEAN_11099
Stocks & Reagents
Stocks Listed in FlyBase ( 13 )
Bloomington	18283 w1118; PBac{RB}CG10936e04671 21538 y1 w67c23; P{wHy}CG10936DG16411 21086 y1 w67c23; P{EPgy2}CG10936EY12999 29910 w1118; Mi{ET1}CG10936MB11295 CG18186MB11295 29006 y1 w*; P{EP}rhiG8227 CG10936G8227/CyO 36184 y1 w*; Mi{MIC}rhiMI03056 CG10936MI03056
Harvard	- PBac{PB}CG10936c02794 - PBac{RB}CG10936e04671 - PBac{WH}CG10936f00034 - PBac{WH}CG10936f02043 - PBac{WH}CG10936f03564
VDRC	v4957 w1118; P{GD2055}v4957/TM3
	More stocks available...
Genomic Clones ( 1 )
	BACR12C23 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 19 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE29777
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	RE18918 RE19334 RE24338 RE55859
Other clones	178579 bs21g08 CK01.32A.C5 EK027611 EK047611 EK089338 EK202655 EK203232 EK246816 EK248801 EK283663 EP09016 EP18306 RH42331
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0034253 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37000
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_137395 NM_166242 RefSeq (Proteins) • NP_611239 NP_725702 DDBJ / EMBL / GenBank • AAF57823 AAM29450 AAM68482 AY113445 BI234132 BI613221 CL528193 CZ468213 CZ482446 CZ482520 CZ484539 CZ484963 CZ486140 CZ490224 Entrez Gene - A searchable database of RefSeq genes. • 37000 UniProtKB/TrEMBL • Q7JWM6
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • SEA (IPR000082)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0034253 DRSC - Results from RNAi screens. • FBgn0034253 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0034253 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG10936-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0034253 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37000 InParanoid A subset of ortholog calls from InParanoid. • AAEL012794-PA Aedes aegypti (mosquito) AGAP003746-PA Anopheles gambiae (mosquito) XP_624430.2 Apis mellifera (honey bee) XP_001952621.1 Acyrthosiphon pisum (pea aphid) CPIJ011474 Culex pipens (mosquito) 163537 Lottia gigantea (owl limpet) XP_001607283.1 Nasonia vitripennis (wasp) PHUM008676-PA Pediculus humanus (human body louse) XP_968804.1 Tribolium castaneum (red flour beetle) modMine - Data generated by the modENCODE project. • FBgn0034253 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV11776 LH21209 ISCW014666 FBgn0083321 FBgn0212678 FBgn0207658 FBgn0064354 FBgn0174849 FBgn0070709 FBgn0155288 FBgn0143519 FBgn0129271 FBgn0113220 FBgn0090272 CPIJ011474 ACYPI009978 GB12213 AGAP003746 AAEL012794 PB25834 PHUM334420 GLEAN_11099
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG10936 (Isogai et al., 2007, Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
References ( 18 )
Research paper	Isogai et al., 2007, EMBO J. 26(1): 79--89 Novel TRF1/BRF target genes revealed by genome-wide analysis of Drosophila Pol III transcription. [FBrf0193326] Mohr and Gelbart, 2002, Genetics 162(1): 165--176 Using the P{wHy} hybrid transposable element to disrupt genes in region 54D-55B in Drosophila melanogaster. [FBrf0152030]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Bellen, 2011.5.31, set938.xml set938.xml [FBrf0213719] Bellen, 2010.1.28, BDGP_2010_0122.GDP.xml BDGP_2010_0122.GDP.xml [FBrf0209824] Bellen, 2009.8.20, BDGP_2009_0825.GenExel.xml BDGP_2009_0825.GenExel.xml [FBrf0208536] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Gelbart, 2008.3.31, DG.xml DG.xml [FBrf0204101] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
FlyBase analysis	FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946] FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. Genomic mapping of Exelixis insertion collection. [FBrf0184340] Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]