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Gene Dmel\CG15100

General Information
Symbol	Dmel\CG15100	Species	D. melanogaster
Name		Annotation symbol	CG15100
Feature type	protein_coding_gene	FlyBase ID	FBgn0034401
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	55F7-55F7	Sequence location	2R:14,734,363..14,738,104 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG15100 (FBgn0034401). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: methionine-tRNA ligase activity. There is experimental evidence that it is involved in the biological process: neurogenesis. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; Aminoacyl-tRNA synthetase, class I, conserved site; Glutathione S-transferase, C-terminal; Glutathione S-transferase, C-terminal-like; Glutathione S-transferase/chloride channel, C-terminal; Methionine-tRNA ligase, type 1; Methionyl-tRNA synthetase; Methionyl/Leucyl tRNA synthetase; Rossmann-like alpha/beta/alpha sandwich fold; S15/NS1, RNA-binding; WHEP-TRS. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, larval salivary gland, adult female reproductive system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, larval trachea, virgin spermatheca, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1630677_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG15100. Gene sequence location is 2R:14734363..14738104.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 55F7-55F7   Limits computationally determined from genome sequence between P{PZ}l(2)0370903709 and P{lacW}prodk08810
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG15100 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.44 Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG15100-RA FBtr0086627  NM_137538   3403   1022
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG15100-PA   FBpp0085809   112.5   1022   8.74     NP_611382   AAF57625
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • WHEP-TRS (IPR000738) Aminoacyl-tRNA synthetase, class I, conserved site (IPR001412) Glutathione S-transferase, C-terminal (IPR004046) S15/NS1, RNA-binding (IPR009068) Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (IPR009080) Glutathione S-transferase, C-terminal-like (IPR010987) Methionine-tRNA ligase, type 1 (IPR023458) Rossmann-like alpha/beta/alpha sandwich fold (IPR014729) Methionyl-tRNA synthetase (IPR014758) Methionyl/Leucyl tRNA synthetase (IPR015413) Glutathione S-transferase/chloride channel, C-terminal (IPR017933)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA538626   AA804106   AE013599 AAF57625   AI124302   AI260053   AI295070   AI518453   AI532304   AI532305   AI534593   AI534874   AI543249   AI546701   AY119445 AAM50099   BF486770   BF488091   BF488298   BF490371   BF499311   BF501091   BF502848   BF503888   BF504441   BG634135   BG636107   BG638854   BI239551   BI632367   CK604548   CO155162   CO155700   CO325273   CO332657   EC090667   EC217783   EC224726   EC246831   ES694352   ES694353   EY198985
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	A1ZBE9 Q8MRS4
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
microtubule associated complex inferred from direct assay (Hughes et al., 2008)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, larval salivary gland, adult female reproductive system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, larval trachea, virgin spermatheca, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    606.1 Larval Midgut    183.3 Larval Hindgut    268.5 Larval Malpighian Tubules    219.6 Larval Fat Body    247.3 Larval Salivary Gland    727 Larval Trachea    320.2 Larval Carcass    432.7 Adult Head    143.6 Adult Eye    192.15 Adult Brain    224.6 Adult Thoracic-Abdominal Ganglion    331.5 Adult Crop    243.1 Adult Midgut    163.5 Adult Hindgut    171.8 Adult Malpighian Tubules    192.6 Adult Fat Body    150.4 Adult Salivary Gland    267.2 Adult Heart    144.2 Adult VirginFemale Spermatheca    353.3 Adult InseminatedFemale Spermatheca    533.4 Adult Ovary    531.4 Adult Testis    465.4 Adult Male Accessory Gland    389.1 Adult Carcass    116 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (606.1) Larval Midgut    183.3 Larval Hindgut    268.5 Larval Malpighian Tubules    219.6 Larval Fat Body    247.3 Larval Salivary Gland  (727) Larval Trachea    320.2 Larval Carcass    432.7 Adult Head    143.6 Adult Eye    192.15 Adult Brain    224.6 Adult Thoracic-Abdominal Ganglion    331.5 Adult Crop    243.1 Adult Midgut    163.5 Adult Hindgut    171.8 Adult Malpighian Tubules    192.6 Adult Fat Body    150.4 Adult Salivary Gland    267.2 Adult Heart    144.2 Adult VirginFemale Spermatheca    353.3 Adult InseminatedFemale Spermatheca  533.4 Adult Ovary  531.4 Adult Testis    465.4 Adult Male Accessory Gland    389.1 Adult Carcass    116 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    606.1 Larval Midgut    183.3 Larval Hindgut    268.5 Larval Malpighian Tubules    219.6 Larval Fat Body    247.3 Larval Salivary Gland    727 Larval Trachea    320.2 Larval Carcass    432.7 Adult Head    143.6 Adult Eye    192.15 Adult Brain    224.6 Adult Thoracic-Abdominal Ganglion    331.5 Adult Crop    243.1 Adult Midgut    163.5 Adult Hindgut    171.8 Adult Malpighian Tubules    192.6 Adult Fat Body    150.4 Adult Salivary Gland    267.2 Adult Heart    144.2 Adult VirginFemale Spermatheca    353.3 Adult InseminatedFemale Spermatheca    533.4 Adult Ovary    531.4 Adult Testis    465.4 Adult Male Accessory Gland    389.1 Adult Carcass    116 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    606.1 Larval Midgut    183.3 Larval Hindgut    268.5 Larval Malpighian Tubules    219.6 Larval Fat Body    247.3 Larval Salivary Gland    727 Larval Trachea    320.2 Larval Carcass    432.7 Adult Head    143.6 Adult Eye    192.15 Adult Brain    224.6 Adult Thoracic-Abdominal Ganglion    331.5 Adult Crop    243.1 Adult Midgut    163.5 Adult Hindgut    171.8 Adult Malpighian Tubules    192.6 Adult Fat Body    150.4 Adult Salivary Gland    267.2 Adult Heart    144.2 Adult VirginFemale Spermatheca    353.3 Adult InseminatedFemale Spermatheca    533.4 Adult Ovary    531.4 Adult Testis    465.4 Adult Male Accessory Gland    389.1 Adult Carcass    116 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    606.1 Larval Midgut    183.3 Larval Hindgut    268.5 Larval Malpighian Tubules    219.6 Larval Fat Body    247.3 Larval Salivary Gland    727 Larval Trachea    320.2 Larval Carcass    432.7 Adult Head    143.6 Adult Eye    192.15 Adult Brain    224.6 Adult Thoracic-Abdominal Ganglion    331.5 Adult Crop    243.1 Adult Midgut    163.5 Adult Hindgut    171.8 Adult Malpighian Tubules    192.6 Adult Fat Body    150.4 Adult Salivary Gland    267.2 Adult Heart    144.2 Adult VirginFemale Spermatheca    353.3 Adult InseminatedFemale Spermatheca    533.4 Adult Ovary    531.4 Adult Testis    465.4 Adult Male Accessory Gland    389.1 Adult Carcass    116 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  606.1 Larval Midgut    183.3 Larval Hindgut    268.5 Larval Malpighian Tubules    219.6 Larval Fat Body    247.3 Larval Salivary Gland  727 Larval Trachea    320.2 Larval Carcass    432.7 Adult Head    143.6 Adult Eye    192.15 Adult Brain    224.6 Adult Thoracic-Abdominal Ganglion    331.5 Adult Crop    243.1 Adult Midgut    163.5 Adult Hindgut    171.8 Adult Malpighian Tubules    192.6 Adult Fat Body    150.4 Adult Salivary Gland    267.2 Adult Heart    144.2 Adult VirginFemale Spermatheca    353.3 Adult InseminatedFemale Spermatheca  533.4 Adult Ovary  531.4 Adult Testis    465.4 Adult Male Accessory Gland    389.1 Adult Carcass    116 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    606.1 Larval Midgut    183.3 Larval Hindgut    268.5 Larval Malpighian Tubules    219.6 Larval Fat Body    247.3 Larval Salivary Gland    727 Larval Trachea    320.2 Larval Carcass    432.7 Adult Head    143.6 Adult Eye    192.15 Adult Brain    224.6 Adult Thoracic-Abdominal Ganglion    331.5 Adult Crop    243.1 Adult Midgut    163.5 Adult Hindgut    171.8 Adult Malpighian Tubules    192.6 Adult Fat Body    150.4 Adult Salivary Gland    267.2 Adult Heart    144.2 Adult VirginFemale Spermatheca    353.3 Adult InseminatedFemale Spermatheca    533.4 Adult Ovary    531.4 Adult Testis    465.4 Adult Male Accessory Gland    389.1 Adult Carcass    116 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    606.1 Larval Midgut    183.3 Larval Hindgut    268.5 Larval Malpighian Tubules    219.6 Larval Fat Body    247.3 Larval Salivary Gland    727 Larval Trachea    320.2 Larval Carcass    432.7 Adult Head    143.6 Adult Eye    192.15 Adult Brain    224.6 Adult Thoracic-Abdominal Ganglion    331.5 Adult Crop    243.1 Adult Midgut    163.5 Adult Hindgut    171.8 Adult Malpighian Tubules    192.6 Adult Fat Body    150.4 Adult Salivary Gland    267.2 Adult Heart    144.2 Adult VirginFemale Spermatheca    353.3 Adult InseminatedFemale Spermatheca    533.4 Adult Ovary    531.4 Adult Testis    465.4 Adult Male Accessory Gland    389.1 Adult Carcass    116 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    143.6   NA  Eye    192.15   NA  Brain    224.6   606.1  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    331.5   NA  Crop    243.1   183.3  Midgut    163.5   268.5  Hindgut    171.8   219.6  Malpighian Tubules    192.6   247.3  Fat Body    150.4   727  Salivary Gland    267.2   NA  Heart    144.2   320.2  Trachea    NA   NA  VirginFemale Spermatheca    353.3   NA  InseminatedFemale Spermatheca    533.4   NA  Ovary    531.4   NA  Testis    465.4   NA  Male Accessory Gland    389.1   432.7  Carcass    116 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    44 central nervous system, larvae L3    20 central nervous system, pupae P8    10 head, virgin 1-day female    4 head, virgin 4-day female    5 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    5 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    2 fat body, white prepupae    8 fat body, pupae P8    5 carcass, larvae L3 wandering    15 carcass, 1-day adult    3 carcass, 4-day adult    6 carcass, 20-day adult    5 ovary, virgin 4-day female    38 ovary, mated 4-day female    30 testis, mated 4-day male    41 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (44) central nervous system, larvae L3    20 central nervous system, pupae P8    10 head, virgin 1-day female    4 head, virgin 4-day female    5 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    5 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    2 fat body, white prepupae    8 fat body, pupae P8    5 carcass, larvae L3 wandering    15 carcass, 1-day adult    3 carcass, 4-day adult    6 carcass, 20-day adult    5 ovary, virgin 4-day female  (38) ovary, mated 4-day female  (30) testis, mated 4-day male  (41) accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    44 central nervous system, larvae L3    20 central nervous system, pupae P8    10 head, virgin 1-day female    4 head, virgin 4-day female    5 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    5 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    2 fat body, white prepupae    8 fat body, pupae P8    5 carcass, larvae L3 wandering    15 carcass, 1-day adult    3 carcass, 4-day adult    6 carcass, 20-day adult    5 ovary, virgin 4-day female    38 ovary, mated 4-day female    30 testis, mated 4-day male    41 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    44 central nervous system, larvae L3    20 central nervous system, pupae P8    10 head, virgin 1-day female    4 head, virgin 4-day female    5 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    5 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    2 fat body, white prepupae    8 fat body, pupae P8    5 carcass, larvae L3 wandering    15 carcass, 1-day adult    3 carcass, 4-day adult    6 carcass, 20-day adult    5 ovary, virgin 4-day female    38 ovary, mated 4-day female    30 testis, mated 4-day male    41 accessory gland, mated 4-day male    10 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    44 central nervous system, larvae L3    20 central nervous system, pupae P8    10 head, virgin 1-day female    4 head, virgin 4-day female    5 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    5 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    2 fat body, white prepupae    8 fat body, pupae P8    5 carcass, larvae L3 wandering    15 carcass, 1-day adult    3 carcass, 4-day adult    6 carcass, 20-day adult    5 ovary, virgin 4-day female    38 ovary, mated 4-day female    30 testis, mated 4-day male    41 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (44) central nervous system, larvae L3    20 central nervous system, pupae P8    10 head, virgin 1-day female    4 head, virgin 4-day female    5 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    5 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    2 fat body, white prepupae    8 fat body, pupae P8    5 carcass, larvae L3 wandering    15 carcass, 1-day adult    3 carcass, 4-day adult    6 carcass, 20-day adult    5 ovary, virgin 4-day female  (38) ovary, mated 4-day female  30 testis, mated 4-day male  (41) accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    44 central nervous system, larvae L3    20 central nervous system, pupae P8    10 head, virgin 1-day female    4 head, virgin 4-day female    5 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    5 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    2 fat body, white prepupae    8 fat body, pupae P8    5 carcass, larvae L3 wandering    15 carcass, 1-day adult    3 carcass, 4-day adult    6 carcass, 20-day adult    5 ovary, virgin 4-day female    38 ovary, mated 4-day female    30 testis, mated 4-day male    41 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    44 central nervous system, larvae L3    20 central nervous system, pupae P8    10 head, virgin 1-day female    4 head, virgin 4-day female    5 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    5 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    7 head, mated 20-day male    7 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    5 digestive system, 4-day adult    7 digestive system, 20-day adult    7 fat body, larvae L3 wandering    2 fat body, white prepupae    8 fat body, pupae P8    5 carcass, larvae L3 wandering    15 carcass, 1-day adult    3 carcass, 4-day adult    6 carcass, 20-day adult    5 ovary, virgin 4-day female    38 ovary, mated 4-day female    30 testis, mated 4-day male    41 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    48 embryo 02-04hr    4 embryo 04-06hr    4 embryo 06-08hr    12 embryo 08-10hr    19 embryo 10-12hr    31 embryo 12-14hr    31 embryo 14-16hr    28 embryo 16-18hr    18 embryo 18-20hr    13 embryo 20-22hr    14 embryo 22-24hr    14 larva L1    34 larva L2    42 larva L3 12hr old    30 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    23 white prepupae new    25 white prepupae 12hr    26 white prepupae 24hr    33 pupae 2d postWPP    33 pupae 3d postWPP    19 pupae 4d postWPP    13 adult male 01day    21 adult male 05day    31 adult male 30day    28 adult female 01day    25 adult female 05day    44 adult female 30day    42 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (48) embryo 02-04hr    4 embryo 04-06hr    4 embryo 06-08hr    12 embryo 08-10hr    19 embryo 10-12hr  (31) embryo 12-14hr  (31) embryo 14-16hr  (28) embryo 16-18hr    18 embryo 18-20hr    13 embryo 20-22hr    14 embryo 22-24hr    14 larva L1  (34) larva L2  (42) larva L3 12hr old  (30) larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    23 white prepupae new    25 white prepupae 12hr  26 white prepupae 24hr  (33) pupae 2d postWPP  (33) pupae 3d postWPP    19 pupae 4d postWPP    13 adult male 01day    21 adult male 05day  (31) adult male 30day  (28) adult female 01day    25 adult female 05day  (44) adult female 30day  (42) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    48 embryo 02-04hr    4 embryo 04-06hr    4 embryo 06-08hr    12 embryo 08-10hr    19 embryo 10-12hr    31 embryo 12-14hr    31 embryo 14-16hr    28 embryo 16-18hr    18 embryo 18-20hr    13 embryo 20-22hr    14 embryo 22-24hr    14 larva L1    34 larva L2    42 larva L3 12hr old    30 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    23 white prepupae new    25 white prepupae 12hr    26 white prepupae 24hr    33 pupae 2d postWPP    33 pupae 3d postWPP    19 pupae 4d postWPP    13 adult male 01day    21 adult male 05day    31 adult male 30day    28 adult female 01day    25 adult female 05day    44 adult female 30day    42 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    48 embryo 02-04hr    4 embryo 04-06hr    4 embryo 06-08hr    12 embryo 08-10hr    19 embryo 10-12hr    31 embryo 12-14hr    31 embryo 14-16hr    28 embryo 16-18hr    18 embryo 18-20hr    13 embryo 20-22hr    14 embryo 22-24hr    14 larva L1    34 larva L2    42 larva L3 12hr old    30 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    23 white prepupae new    25 white prepupae 12hr    26 white prepupae 24hr    33 pupae 2d postWPP    33 pupae 3d postWPP    19 pupae 4d postWPP    13 adult male 01day    21 adult male 05day    31 adult male 30day    28 adult female 01day    25 adult female 05day    44 adult female 30day    42 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    48 embryo 02-04hr    4 embryo 04-06hr    4 embryo 06-08hr    12 embryo 08-10hr    19 embryo 10-12hr    31 embryo 12-14hr    31 embryo 14-16hr    28 embryo 16-18hr    18 embryo 18-20hr    13 embryo 20-22hr    14 embryo 22-24hr    14 larva L1    34 larva L2    42 larva L3 12hr old    30 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    23 white prepupae new    25 white prepupae 12hr    26 white prepupae 24hr    33 pupae 2d postWPP    33 pupae 3d postWPP    19 pupae 4d postWPP    13 adult male 01day    21 adult male 05day    31 adult male 30day    28 adult female 01day    25 adult female 05day    44 adult female 30day    42 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (48) embryo 02-04hr    4 embryo 04-06hr    4 embryo 06-08hr    12 embryo 08-10hr    19 embryo 10-12hr  31 embryo 12-14hr  31 embryo 14-16hr  28 embryo 16-18hr    18 embryo 18-20hr    13 embryo 20-22hr    14 embryo 22-24hr    14 larva L1  (34) larva L2  (42) larva L3 12hr old  30 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    23 white prepupae new    25 white prepupae 12hr  26 white prepupae 24hr  (33) pupae 2d postWPP  (33) pupae 3d postWPP    19 pupae 4d postWPP    13 adult male 01day    21 adult male 05day  31 adult male 30day  28 adult female 01day    25 adult female 05day  (44) adult female 30day  (42) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    48 embryo 02-04hr    4 embryo 04-06hr    4 embryo 06-08hr    12 embryo 08-10hr    19 embryo 10-12hr    31 embryo 12-14hr    31 embryo 14-16hr    28 embryo 16-18hr    18 embryo 18-20hr    13 embryo 20-22hr    14 embryo 22-24hr    14 larva L1    34 larva L2    42 larva L3 12hr old    30 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    23 white prepupae new    25 white prepupae 12hr    26 white prepupae 24hr    33 pupae 2d postWPP    33 pupae 3d postWPP    19 pupae 4d postWPP    13 adult male 01day    21 adult male 05day    31 adult male 30day    28 adult female 01day    25 adult female 05day    44 adult female 30day    42 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    48 embryo 02-04hr    4 embryo 04-06hr    4 embryo 06-08hr    12 embryo 08-10hr    19 embryo 10-12hr    31 embryo 12-14hr    31 embryo 14-16hr    28 embryo 16-18hr    18 embryo 18-20hr    13 embryo 20-22hr    14 embryo 22-24hr    14 larva L1    34 larva L2    42 larva L3 12hr old    30 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    21 larva L3 puffstage 7-9    23 white prepupae new    25 white prepupae 12hr    26 white prepupae 24hr    33 pupae 2d postWPP    33 pupae 3d postWPP    19 pupae 4d postWPP    13 adult male 01day    21 adult male 05day    31 adult male 30day    28 adult female 01day    25 adult female 05day    44 adult female 30day    42 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    42 Schneider line 2 Sg4    37 embryonic 1182-4H    26 embryonic GM2    31 embryonic Kc167    21 embryonic S1    29 embryonic S3    36 leg disc CME L1    34 wing disc CME-W2    39 wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    18 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3    28 eye-antennal disc ML-DmD11    22 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    31 CNS ML-DmBG2-c2    57 tumorous blood cells mbn2    31 ovary fGS/OSS    13 ovary OSC    16 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (42) Schneider line 2 Sg4  (37) embryonic 1182-4H  26 embryonic GM2  (31) embryonic Kc167    21 embryonic S1  (29) embryonic S3  (36) leg disc CME L1  (34) wing disc CME-W2  (39) wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    18 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3  (28) eye-antennal disc ML-DmD11    22 antennal disc ML-DmD20-c5  (30) mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1  (31) CNS ML-DmBG2-c2  (57) tumorous blood cells mbn2  (31) ovary fGS/OSS    13 ovary OSC    16 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    42 Schneider line 2 Sg4    37 embryonic 1182-4H    26 embryonic GM2    31 embryonic Kc167    21 embryonic S1    29 embryonic S3    36 leg disc CME L1    34 wing disc CME-W2    39 wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    18 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3    28 eye-antennal disc ML-DmD11    22 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    31 CNS ML-DmBG2-c2    57 tumorous blood cells mbn2    31 ovary fGS/OSS    13 ovary OSC    16 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    42 Schneider line 2 Sg4    37 embryonic 1182-4H    26 embryonic GM2    31 embryonic Kc167    21 embryonic S1    29 embryonic S3    36 leg disc CME L1    34 wing disc CME-W2    39 wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    18 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3    28 eye-antennal disc ML-DmD11    22 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    31 CNS ML-DmBG2-c2    57 tumorous blood cells mbn2    31 ovary fGS/OSS    13 ovary OSC    16 ovary OSS    8 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    42 Schneider line 2 Sg4    37 embryonic 1182-4H    26 embryonic GM2    31 embryonic Kc167    21 embryonic S1    29 embryonic S3    36 leg disc CME L1    34 wing disc CME-W2    39 wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    18 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3    28 eye-antennal disc ML-DmD11    22 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    31 CNS ML-DmBG2-c2    57 tumorous blood cells mbn2    31 ovary fGS/OSS    13 ovary OSC    16 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (42) Schneider line 2 Sg4  (37) embryonic 1182-4H  26 embryonic GM2  31 embryonic Kc167    21 embryonic S1  29 embryonic S3  (36) leg disc CME L1  (34) wing disc CME-W2  (39) wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    18 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3  28 eye-antennal disc ML-DmD11    22 antennal disc ML-DmD20-c5  30 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1  31 CNS ML-DmBG2-c2  (57) tumorous blood cells mbn2  31 ovary fGS/OSS    13 ovary OSC    16 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    42 Schneider line 2 Sg4    37 embryonic 1182-4H    26 embryonic GM2    31 embryonic Kc167    21 embryonic S1    29 embryonic S3    36 leg disc CME L1    34 wing disc CME-W2    39 wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    18 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3    28 eye-antennal disc ML-DmD11    22 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    31 CNS ML-DmBG2-c2    57 tumorous blood cells mbn2    31 ovary fGS/OSS    13 ovary OSC    16 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    42 Schneider line 2 Sg4    37 embryonic 1182-4H    26 embryonic GM2    31 embryonic Kc167    21 embryonic S1    29 embryonic S3    36 leg disc CME L1    34 wing disc CME-W2    39 wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    18 wing disc ML-DmD32    18 haltere disc ML-DmD17-c3    28 eye-antennal disc ML-DmD11    22 antennal disc ML-DmD20-c5    30 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    31 CNS ML-DmBG2-c2    57 tumorous blood cells mbn2    31 ovary fGS/OSS    13 ovary OSC    16 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    10 cold shock, 4-day adult    6 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    11 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    26 Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    10 cold shock, 4-day adult    6 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3  (31) Ethanol 5% 3 hrs, larvae L3    11 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult  26 Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    10 cold shock, 4-day adult    6 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    11 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    26 Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    10 cold shock, 4-day adult    6 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    11 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    26 Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    10 cold shock, 4-day adult    6 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    11 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    26 Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    10 cold shock, 4-day adult    6 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3  31 Ethanol 5% 3 hrs, larvae L3    11 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult  26 Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    10 cold shock, 4-day adult    6 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    11 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    26 Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    10 cold shock, 4-day adult    6 heat shock, 4-day adult    18 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    23 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    11 Ethanol 10% 3 hrs, larvae L3    13 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    18 Caffeine 25 mg/ml 48 hrs, 4-day adult    8 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    26 Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_26 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0034401 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG15100-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal CG15100GD8907 lethal, with Scer\GAL4pnr-MD237 CG15100GD8907 lethal | pupal stage, with Scer\GAL4pnr-MD237 CG15100GD8907 Other Phenotypes Allele neuroanatomy defective | larval stage CG15100GD8907 Phenotype manifest in Allele embryonic/larval neuroblast | larval stage CG15100GD8907 ganglion mother cell | larval stage CG15100GD8907
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of CG15100 Class Mutagen Stocks Known lesion CG15100BG02730 1 -- CG15100CB-6649-3 1 -- CG15100EY23256 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG15100 Class Mutagen Stocks Known lesion CG15100GD8907 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG15100KK105745 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8907} NA P{KK105745} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap P{lacW}l(2)SH0516SH0516 No miscellaneous insertions P{GT1}CG15100BG02730 NA P{RS3}CG15100CB-6649-3 NA insertion of mobile activating element P{EPgy2}CG15100EY23256 NA
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
neurogenesis inferred from mutant phenotype (Neumüller et al., 2011)
Cellular Component
CV term Evidence References
microtubule associated complex inferred from direct assay (Hughes et al., 2008)
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
ATP binding inferred from electronic annotation with InterPro:IPR000738, InterPro:IPR001412, InterPro:IPR009080, InterPro:IPR014758, InterPro:IPR015413 (FlyBase Curators et al., 2004-) methionine-tRNA ligase activity inferred from sequence or structural similarity (Liang and Biggin, 1998) inferred from sequence or structural similarity with Saccharomyces MES1 (FlyBase, 1992-)
Biological Process
CV term Evidence References
methionyl-tRNA aminoacylation inferred from electronic annotation with InterPro:IPR014758 (FlyBase Curators et al., 2004-) inferred from sequence or structural similarity (Liang and Biggin, 1998)
Cellular Component
CV term Evidence References
cytoplasm inferred from electronic annotation with InterPro:IPR001412, InterPro:IPR009080, InterPro:IPR014758, InterPro:IPR015413 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG15100 - Aats-arg experimental knowledge based (Guruharsha et al., 2011) CG15100 - Aats-asn anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG15100 - Aats-asp experimental knowledge based (Guruharsha et al., 2011) CG15100 - Aats-gln anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) CG15100 - Aats-glupro experimental knowledge based (Guruharsha et al., 2011) CG15100 - Aats-ile anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) CG15100 - Aats-lys anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG15100 - CG1091 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG15100 - CG12304 experimental knowledge based (Guruharsha et al., 2011) CG15100 - CG30185 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) CG15100 - CG5027 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG15100 - CG7881 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG15100 - CG8235 experimental knowledge based (Guruharsha et al., 2011) CG15100 - Gmd anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG15100 - frc anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG15100 - lack anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG15100 - lectin-46Ca anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG15100 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0034401 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37177
Orthologs
OrthoDB Orthologs (38) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG62JP9S Dipteran inclusive ortholog search EOG68KRK9 Insect inclusive ortholog search EOG6280WP Arthropod inclusive ortholog search EOG6P8D04 Metazoa inclusive ortholog search EOG6FRCJG
Orthologs in Drosophila Species (EOG62JP9S)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG15100     Drosophila simulans   Dsim\GD25352 Y   Drosophila sechellia   Dsec\GM19865 Y   Drosophila erecta   Dere\GG20938 Y   Drosophila yakuba   Dyak\GE13875 Y   Drosophila ananassae   Dana\GF13746 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA13491 Y   Drosophila persimilis   Dper\GL10845 Y   Drosophila willistoni   Dwil\GK20695 Y   Drosophila virilis   Dvir\GJ22433 Y   Drosophila mojavensis   Dmoj\GI20156 Y   Drosophila grimshawi   Dgri\GH19733 Y
Orthologs in non-Drosophila Dipterans (EOG68KRK9)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL014494   Aedes aegypti Yellow fever mosquito  Aaeg\AAEL014709   Anopheles gambiae Malaria mosquito  Agam\AGAP007891   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ802185
Orthologs in non-Dipteran Insects (EOG6280WP)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC413796   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG009769   Acromyrmex echinatior Panamanian leafcutter ant  Aech\metG   Atta cephalotes Leafcutter ant  Acep\ACEP16808   Camponotus floridanus Florida carpenter ant  Cflo\metG   Harpegnathos saltator Jerdons jumping ant  Hsal\metG   Linepithema humile Argentine ant  Lhum\LH24208   Pogonomyrmex barbatus Red harvester ant  Pbar\PB11842   Solenopsis invicta Red fire ant  Sinv\SINV17334   Acyrthosiphon pisum Pea aphid  Apim\ACYPI008352   Bombyx mori Silkmoth  Bmor\BGIBMGA003259   Pediculus humanus Human body louse  Phum\PHUM118730   Tribolium castaneum Red flour beetle  Tcas\TC009707
Orthologs in non-Insect Arthropods (EOG6P8D04)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\metG   Ixodes scapularis Deer tick  Isca\ISCW017452
Orthologs in non-Arthropod Metazoa (EOG6FRCJG)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\mrs-1   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_010323gn   Danio rerio Zebrafish  Drer\mars   Xenopus tropicalis Western clawed frog  Xtro\mars   Mus musculus House mouse  Mmus\Mars   Rattus norvegicus Norway rat  Rnor\Mars   Homo sapiens Human  Hsap\MARS
Human Orthologs (1)
Gene OMIM HGNC Hsap\MARS
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD25352 Drosophila sechellia Dsec\GM19865 Drosophila erecta Dere\GG20938 Drosophila yakuba Dyak\GE13875 Drosophila ananassae Dana\GF13746 Drosophila pseudoobscura pseudoobscura Dpse\GA13491 Drosophila persimilis Dper\GL10845 Drosophila willistoni Dwil\GK20695 Drosophila virilis Dvir\GJ22433 Drosophila mojavensis Dmoj\GI20156 Drosophila grimshawi Dgri\GH19733
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	13123 w1118; P{GT1}CG15100BG02730/CyO 22616 y1 w67c23; P{EPgy2}CG15100EY23256
Kyoto	124158 w1118; P{RS3}CG15100CB-6649-3
VDRC	v25191 w1118; P{GD8907}v25191 v25193 w1118; P{GD8907}v25193
Genomic Clones ( 1 )
	BACR27C21 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 34 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT05114
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT05804 AT13842 AT16311 AT18683 AT21292 AT23176 AT23536 AT26825 AT30215 GM12847 LD18202 LP03730 LP08591 RE36072 SD01139 SD03767 SD03768 SD07503 SD09952 SD10449 SD13703 SD26132 UT01272
Other clones	67397 79890 277251 AI124302 CK01.27A.H12 EK196010 EK304150 EN05503 EN06603 LD37969
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0034401 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37177
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG15100 anon-EST:Liang-2.15 (Ashburner, 2004.6.30)
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_137538 RefSeq (Proteins) • NP_611382 DDBJ / EMBL / GenBank • AAF57625 AAM50099 AI124302 AY119445 BF503888 Entrez Gene - A searchable database of RefSeq genes. • 37177 UniProtKB/TrEMBL • A1ZBE9 Q8MRS4
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • WHEP-TRS (IPR000738) Aminoacyl-tRNA synthetase, class I, conserved site (IPR001412) Glutathione S-transferase, C-terminal (IPR004046) S15/NS1, RNA-binding (IPR009068) Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (IPR009080) Glutathione S-transferase, C-terminal-like (IPR010987) Methionine-tRNA ligase, type 1 (IPR023458) Rossmann-like alpha/beta/alpha sandwich fold (IPR014729) Methionyl-tRNA synthetase (IPR014758) Methionyl/Leucyl tRNA synthetase (IPR015413) Glutathione S-transferase/chloride channel, C-terminal (IPR017933)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0034401 DRSC - Results from RNAi screens. • FBgn0034401 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0034401 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG15100-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0034401 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37177 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37177 modMine - Data generated by the modENCODE project. • FBgn0034401
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	anon-EST:Liang-2.15   CG15100 (Keleman et al., 2009.8.5, Hughes et al., 2008) clone 2.15 (Liang and Biggin, 1998) MRS (Smith et al., 2004) p120 (Smith et al., 2004)
Name Synonym
Secondary FlyBase IDs
	FBgn0025966
References ( 27 )
Generate a list of	All references relating to this gene ( 27 )
List References by type	Research paper  ( 6 ) Supplementary material  ( 6 ) Personal communication to FlyBase  ( 10 ) FlyBase analysis  ( 2 ) Curated genome annotation  ( 2 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...